dpe_512

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATCCATACAAGCGGCATCACAATCTTTGGACGCATCGAAAGCTACTCCTGGTATGTACCCGCAACAATTAAGATAAACATTACTTACATATACATATGTCTATTCAGCAAAATGGTTGCAGCAGACAAGGCTTTATACAAGCGGTTTACGGCTGAGACCCATGGGCACGATCTTCAGGCTCTATCGCCTCCACAAACACTAGCCGACTTCTCACCTAATTTTTGTCGCAACAACAGCCACTCGGGCGATGA **********************************************************************************************************.....((((.((((.......((((.....))))........)))).)))).........*********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	M042 female body
.................................................................................................................................................TTACGGCTGAGACCCATGGGCAC...................................................................................	23	0	1	4.00	4	4	0
.................................................................................................................................................................................................................................CGCAACAACAGCCACTCGGGC.....	21	0	1	3.00	3	3	0
...............ATCACAATCTTTGGACGCATCGA.....................................................................................................................................................................................................................	23	0	1	3.00	3	3	0
...............ATCACAATCTTTGGACGC..........................................................................................................................................................................................................................	18	0	1	3.00	3	3	0
....................................................................................................................................................................................................................................AACAACAGCCACTCGGGC.....	18	0	1	2.00	2	2	0
....................................................................................................................................TTATACAAGCGGTTTACGGC...................................................................................................	20	0	1	2.00	2	2	0
.................................................................................................................................................TTACGGCTGAGACCCATGGGCACGCT................................................................................	26	1	1	1.00	1	1	0
............................................................................................................AAAATGGTTGCAGCAGAC.............................................................................................................................	18	0	1	1.00	1	1	0
.........................................................................................................................................................GAGACCCATGGGCACGATC...............................................................................	19	0	1	1.00	1	0	1
......ACAAGCGGCATCACAATCTTTGGACG...........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0
...............................................................................................................................................GTTTACGGCTGAGACCCATG........................................................................................	20	0	1	1.00	1	0	1
...........................................................................................................................................................GACCCATGGGCACGATCTTCAGGCT.......................................................................	25	0	1	1.00	1	1	0
........................................................................................................................................................................................................................AATTTTTGTCGCAACAACAGCCACTC.........	26	0	1	1.00	1	1	0
...............................................................................................................................................................................................................TTCTCACCTAATTTTTGTCGCAACA...................	25	0	1	1.00	1	0	1

TAGGTATGTTCGCCGTAGTGTTAGAAACCTGCGTAGCTTTCGATGAGGACCATACATGGGCGTTGTTAATTCTATTTGTAATGAATGTATATGTATACAGATAAGTCGTTTTACCAACGTCGTCTGTTCCGAAATATGTTCGCCAAATGCCGACTCTGGGTACCCGTGCTAGAAGTCCGAGATAGCGGAGGTGTTTGTGATCGGCTGAAGAGTGGATTAAAAACAGCGTTGTTGTCGGTGAGCCCGCTACT *********************************************************************************.....((((.((((.......((((.....))))........)))).)))).........**********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V050 head
........................................................................................................................CGTCTGTTCCGAGATATGTTC..............................................................................................................	21	1	1	1.00	1	1	0
..............................................................................................................................................................................GTCGGCGATAGCGGGGGTGTT........................................................	21	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:1206072-1206322 -	dpe_512	ATCCATACAAGCGGCATCACAATCTTTGGACGCATCGAAAGCTACTCCTGGTATGTACCCGCAACAA----------------TT----A-------------AGATAAACATTA-CTTACATATACA---------T---ATGTCTATTCAGCAAAATGGTTGCAGCAGACAAGGCTTTATACAAGCGGTTTACGGCTGAGACCCATGGGCACGATCTTCAGGCTCTATCGCCTCCACAAACACTAGCCGACTTCTCACCTAATTTTTGTCGCAACAACAGCCACTCGGGCGATGA
droWil2	scf2_1100000004968:1829642-1829911 -		ATACAAACTGGCGGAATCAATATATTTGGGCGAATAGAAAGCTATTCGTGGTATGTATTGAAGAATC--------GGTTACTGTATTCATAAATATGAATGTATA-----------------TATAA--ATTCCGTTTATTTGGATTTTTCAGTAAAATGGTTGCCGCTGAGAAGATTTTGTATAAACGCTTTACGGCAGAAACACAAGGCCATGATCTACAAGCGTTGTCACCCCCACAAACTCTAGCCGATTTTTCACCAAACTTTCACCGCAACAATAGTCAGTCAGGAGATGA
droVir3	scaffold_12963:14125918-14126070 -		------------------------------------------------------------------------------------------------------------------------------------------------TCTATTTAGCAAAATGGTTGCAGCCGAGAAGGTGTTATACAAACGATTTACAGCTGAGACCCACGGTCATGACTTGCAAGCGTTATCACCTCCTCAAACTCTGTCGGATCTTTCACCAAACTTTCATCGCAATAACAGTCAATCCGGCGATGA
droMoj3	scaffold_6500:29718556-29718740 -		ATGA-------------------------------------------------------------------------------------CTTA----------TATGAAAT--------------ATGTATGTGTA-T--TTTTTATTTCAAGCAAAATGGTTGCAGCTGAGAAGGTATTATACAAACGATTTACAGCTGAGACGCACGGGCATGATTTGCAAGCGCTGTCGCCTCCGCAAACTTTGTCGGATCTTTCACCAAACTTTCATCGCAATAACAGTCAATCGGGTGATGA
droGri2	scaffold_15126:1740559-1740810 +		ATTCAAACTGGAGGCATCACCATTTTTGGACGCATCGAAAGCTATTCGTGGTAAATTTGCCTTGTTCCCTTTCTT--------------------A-------T-TATATATATT-GATTTATT-------------T--G-TTTTTGTTTAGCAAAATGGTTGCAGCGGAGAAGGTGTTGTACAAGCGCTTTACGGCAGAGACACACGGACATGATCTGCAAGCGTTGTCGCCACCGCAAACTCTGTCGGATCTGTCGCCCAATTTTCATCGGAACAACAGTCAGTCCGGCGATGA
droAna3	scaffold_13339:701832-702022 -		CAACAAAG---------------------------------------------------------------------------------CAAA----------TATGAAATTA----TTACATT--------AGAT-T--TTTTTTTTTTAAGCAAAATGGTAGCAGCTGAAAAAGTTTTATATAAGAGATTTACTGCTGAATCGCATGGACACGATCTTCAGGCATTGTCTCCACCGCAAACTCTGGTCGACTTTTCACCAAACTTTCGACGAAACAATAGCCAGTCTGGAGATGA
droBip1	scf7180000395582:5994-6182 -		ACTAAAAAAAA---------------------------------------------------------------------------------------------------ATTTA-TTTGTATATAA--TTT-----TA-TTTTTATTCTAAGCAAAATGGTAGCAGCTGAGAAGGTTTTATACAAAAGATTTACTGCTGAGACGCATGGACATGATCTTCAGGCATTGTCACCACCACAAACACTGGTTGACTTTTCACCAAACTTTCGTCGAAACAATAGCCAGTCTGGAGATGA
droKik1	scf7180000301730:13476-13632 -		T--------------------------------------------------------------------------------------------------------------------------------------------ATTTATTTTTAGTAAAATGGTTGCAGCTGAAAAAGTTTTGTATAAGCGATTTACGGCTGAAACTCATGGGCATGACCTTCAGGCACTATCGCCTCCTCAAACGTTGACCGACTTTTCACCTAACTTTCGTCGGACCAACAGCCAATCAGGAGATGA
droFic1	scf7180000454035:27639-27882 +		ATACAAACAAGTGGAATCACAATCTTTGGTCGCATAGAAAGTTACTCGTGGTAGGTGTTGCAAATTA------------------------------------CATTTAACGATT-TTAAAGTT-------------T--G-TTTTATTTTAGCAAAATGGTTGCAGCTGAGAAAGTATTGTATAAACGATTTACGGCAGATACTCATGGCCATGACCTTCAAGCGTTATCACCACCCCAAACTTTGGCAGACTTTTCGCCTAACTTTCGTCAAAACAACAGTCAATCCGGGGATGA
droEle1	scf7180000489566:6180-6423 -		ATACAAACAAGTGGTATCACAATCTTCGGTCGTATAGAAAGTTACTCATGGTAAGTTCCTTAAAACA------------------------------------CATAAAAC-ATT-TTTAAATT-------------T--GTATTTATTTCAGCAAAATGGTTGCAGCCGAGAAAGTGTTGTATAAACGATTTACAGTAGACACTCATGGGCATGACCTTCAGGCGCTATCACCCCCCCAAACTTTGACTGACTTTTCGCCCAACTTTCGCCGGCACAACAGTCAATCTGGAGATGA
droRho1	scf7180000774492:11681-11924 -		ATACAAACAAGCGGTATCACTATCTTCGGGCGCATAGAAAGTTACTCATGGTAAGTTTCCTAAAATA------------------------------------CATCTAACT-TT-TTTTAAGT-------------G--TTATTTATTATAGCAAAATGGTGGCAGCTGAGAAAGTATTGTATAAACGATTCACAGCAGATACTCATGGACACGACCTTCAGGCGCTATCACCACCCCAAACCTTGACTGACTTTTCCCCTAACTTTCGCCGAAACAACAGCCAGTCTGGAGATGA
droBia1	scf7180000302074:21240-21486 -		ATACAAACAAGTGGAATAACGATCTTTGGTCGCATAGAAAGTTATTCATGGTATGTCCCTAAAATTA------------------------------------TTTAAAAAATGATTCAAAACT--A----------A--TTAATTTTTTTAGCAAAATGGTTGCAGCTGAAAAAGTACTGTATAAACGATTTACAGCAGATACTCATGGGCATGACCTTCAGGCGTTATCACCACCCCAAACTTTGTCTGACTTTTCGCCTAACTTTCGGCAAAACAACAGTCAGTCTGGAGATGA
droTak1	scf7180000414428:6019-6271 -		ATACAAACAAGTGGAATTACAATTTTTGGTCGCATAGAAAGTTATTCATGGTATGTTCTTTATATTA----------------------------ACAATGTATATCAAACTTTT-TTTAAACT-------------A--GTATTTGTTTTAGCAAAATGGTCGCAGCTGAAAAAGTTTTATATAAACGGTTTACAGCAGATACACATGGGCATGACCTTCAGGCGCTATCACCTCCTCAAACATTGTCTGATTTTTCGCCAAACTTTCGCCGAAACAACAGTCAGTCCGGTGATGA
droEug1	scf7180000409282:31843-32087 +		ATAAAAACAAGTGGAATCACGATCTTTGGCCGCATAGAAAGTTACTCATGGTATGTTGCGTATGTTA------------------------------------CGTTTAAAGTTT-TTTAAATT-------------T--GAATTTATTTTAGCAAAATGGTTGCAGCTGAAAAAGTATTGTATAAACGTTTTACAGCAGATATGCATGGGCATGATCTTCAAGCGCTGTCACCACCCCAAACTTTGACAGACTTTTCGCCTAACTTTGGCCGAAATAACAGTCAATCTGGAGATGA
dm3	chrU:3449081-3449325 +		ATACAAACAAGTGGCATCACGATTTTTGGACGGATAGAAAGTTACTCATGGTATGTTTTTTTAGTTA------------------------------------CATAGAAATATT-TTTTAATT-------------C--ATCTTCATTATAGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCTGACTTTTCACCAAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA
droSim2	3l:23855936-23856180 -		ATTCAAACAAGTGGCATCACGATTTTTGGAAGGATAGAAAGTTACTCATGGTATGTTTATTTAGTTA------------------------------------CATAAAAATATT-TTTTAATT-------------T--ATCTTCATTATAGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACGTTGACTGACTTTTCACCCAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA
droSec2	scaffold_88:68011-68255 +		ATTCAAACAAGTGGCATCACGATTTTTGGAAGGATAGAAAGTTACTCATGGTATGTTTATTTAGTTA------------------------------------CATAAAAATATT-TTTTAATT-------------T--ATCTTCATTATAGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACGTTGACTGACTTTTCACCCAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA
droYak3	v2_chr2h_random_005:479211-479455 -		ATACAAACAAGTGGCATCACGATTTTTGGACGTATAGAAAGTTACTCATGGTATGTTTATTTAGTTA------------------------------------TATAAAACAATA-TATTAAAT-------------G--GTCTTTATTATAGCAAAATGGTTGCAGCTGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCTGACTTTTCGCCCAACTTTCGGCGAAACAACAGTCAATCTGGAGATGA
droEre2	scaffold_4929:22881422-22881666 -		ATACAAACAAGTGGCATTACTATTTTTGGACGGATAGAAAGTTATTCATGGTATGTTTATTTAGTTA------------------------------------CACAAAACTATT-TTTTAAAT-------------G--GTCTTCATTATAGCAAAATGGTTGCAGCCGAGAAAGTATTGTATAAGCGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCGGACTTTTCGCCCAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ATCCATACAAGCGGCATCACAATCTTTGGACGCATCGAAAGCTACTCCTGGTATGTACCCGCAACAA----------------TT----A-------------AGATAAACATTA-CTTACATATACA---------T---ATGTCTATTCAGCAAAATGGTTGCAGCAGACAAGGCTTTATACAAGCGGTTTACGGCTGAGACCCATGGGCACGATCTTCAGGCTCTATCGCCTCCACAAACACTAGCCGACTTCTCACCTAATTTTTGTCGCAACAACAGCCACTCGGGCGATGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................TTACGGCTGAGACCCATGGGCAC...................................................................................	23	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CGCAACAACAGCCACTCGGGC.....	21	1	3.00	3	3	0	0	0	0	0
...............ATCACAATCTTTGGACGCATCGA...................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
...............ATCACAATCTTTGGACGC........................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AACAACAGCCACTCGGGC.....	18	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................TTATACAAGCGGTTTACGGC...................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCAGAC.............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................GAGACCCATGGGCACGATC...............................................................................	19	1	1.00	1	0	1	0	0	0	0
......ACAAGCGGCATCACAATCTTTGGACG.........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................GTTTACGGCTGAGACCCATG........................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................GACCCATGGGCACGATCTTCAGGCT.......................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................AATTTTTGTCGCAACAACAGCCACTC.........	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTCTCACCTAATTTTTGTCGCAACA...................	25	1	1.00	1	0	1	0	0	0	0

droWil2

ATACAAACTGGCGGAATCAATATATTTGGGCGAATAGAAAGCTATTCGTGGTATGTATTGAAGAATC--------GGTTACTGTATTCATAAATATGAATGTATA-----------------TATAA--ATTCCGTTTATTTGGATTTTTCAGTAAAATGGTTGCCGCTGAGAAGATTTTGTATAAACGCTTTACGGCAGAAACACAAGGCCATGATCTACAAGCGTTGTCACCCCCACAAACTCTAGCCGATTTTTCACCAAACTTTCACCGCAACAATAGTCAGTCAGGAGATGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................AACACAAGGCCATGATCTACAAGC........................................................................	24	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................CACAAGGCCATGATCTACAAGCGTTG....................................................................	26	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................GGTTGCCGCTGAGAAGATTTTGT...................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................ACAAGGCCATGATCTACAAGCGTTGT...................................................................	26	1	1.00	1	0	0	1	0	0
...............ATCAATATATTTGGGCGA........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................GCCATGATCTACAAGCGTT.....................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................TTCACCAAACTTTCACCGCAACAAT.................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................GCCATGATCTACAAGCGTTGT...................................................................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................AGAAACACAAGGCCATGATCTACA...........................................................................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................TAAAATGGTTGCCGCTGAGAAGATTT......................................................................................................................	26	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................TCTACAAGCGTTGTCACCCCCACA.........................................................	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................TACAAGCGTTGTCACCCCCACAAACTC....................................................	27	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................GATCTACAAGCGTTGTCACCCCCACAAA.......................................................	28	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................CACAAACTCTAGCCGATTTTTCACC....................................	25	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................TGGTTGCCGCTGAGAAGATT.......................................................................................................................	20	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................CAAGCGTTGTCACCCCCACAAACT.....................................................	24	1	1.00	1	0	0	0	1	0
.................................ATAGAAAGCTATTCGTGTA.....................................................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	2	0

droVir3

------------------------------------------------------------------------------------------------------------------------------------------------TCTATTTAGCAAAATGGTTGCAGCCGAGAAGGTGTTATACAAACGATTTACAGCTGAGACCCACGGTCATGACTTGCAAGCGTTATCACCTCCTCAAACTCTGTCGGATCTTTCACCAAACTTTCATCGCAATAACAGTCAATCCGGCGATGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................CGCAATAACAGTCAATCCGGCGAT..	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACAAACGATTTACAGCTGAGACCCA..........................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACGATTTACAGCTGAGACCCACGGTCA....................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACGATTTACAGCTGAGACCCACG........................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TACAGCTGAGACCCACGGTCATGACT...............................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GACCCACGGTCATGACTTGC............................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GATTTACAGCTGAGACCCACGGTC.....................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACAAACGATTTACAGCTGAGACC............................................................................................	26	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GAGACCCACGGTCATGACTTGCAAGC........................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACAAACGATTTACAGCTG.................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AACTCTGTCGGATCTTTCACCA...................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ACGATTTACAGCTGAGACCCACG........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGCTGAGACCCACGGTCATGACT...............................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCCGAGAAGGTGTT.....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TAACAGTCAATCCGGCGATG.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GACTTGCAAGCGTTATCACCTCCTCAAA.......................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CAAAATGGTTGCAGCCGAGAAGGTGTT.....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................TTTACAGCTGAGACCCACG........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ACGATTTACAGCTGAGACC............................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GATTTACAGCTGAGACCCAC.........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................TCACCTCCTCAAACTCTGTCGGATCT..........................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AAACTTTCATCGCAATAACAGTCA............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCCTCAAACTCTGTCGGATCTTTCA......................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ACTCTGTCGGATCTTTCACCAAACTTTCAT..........................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................GACCCACGGTCATGACTTGCAAGC........................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CAAACGATTTACAGCTGAGACC............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACAAACGATTTACAGCTGAGAC.............................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AAGCGTTATCACCTCCTCAAAC......................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................ATACAAACGATTTACAGCT..................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GGTTGCAGCCGAGAAGGT........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GCAATAACAGTCAATCCGGCGAT..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTACAGCTGAGACCCACGGT......................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................ACCCACGGTCATGACTTGCA...........................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTACAGCTGAGACCCAC.........................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GATTTACAGCTGAGACCCACGGT......................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................AAATGGTTGCAGCCGAGAAGGTGTT.....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................AATGGTTGCAGCCGAGAAGGTGTT.....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCCGAGAAGGT........................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................CAAGCGTTATCACCTCCTCA.........................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CATGACTTGCAAGCGTTAT...................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGATTTACAGCTGAGACCCACG........................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GTTATACAAACGATTTACAGCTGA................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AATAACAGTCAATCCGGCGAT..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CACCAAACTTTCATCGCAATAACAGTC.............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GATTTACAGCTGAGACCCACGGTCAT...................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACGATTTACAGCTGAGACCC...........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAACGATTTACAGCTGAGACCCACG........................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CACCTCCTCAAACTCTGTCGGATCTTTCA......................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TCATGACTTGCAAGCGTTATCACC...............................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACTTGCAAGCGTTATCACCTCCTCA.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CTTGCAAGCGTTATCACCTCCTCA.........................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATGA-------------------------------------------------------------------------------------CTTA----------TATGAAAT--------------ATGTATGTGTA-T--TTTTTATTTCAAGCAAAATGGTTGCAGCTGAGAAGGTATTATACAAACGATTTACAGCTGAGACGCACGGGCATGATTTGCAAGCGCTGTCGCCTCCGCAAACTTTGTCGGATCTTTCACCAAACTTTCATCGCAATAACAGTCAATCGGGTGATGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................TTTCACCAAACTTTCATCGCAATAAC.................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................ACAGCTGAGACGCACGGGCA....................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AACAGTCAATCGGGTGATGA	20	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................AATGGTTGCAGCTGAGAAGGT........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................CGCCTCCGCAAACTTTGTCGGATCTT.........................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................CGATTTACAGCTGAGACGCACGGGCAT...................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TCGCAATAACAGTCAATCGGGT.....	22	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................AAGCGCTGTCGCCTCCGCA.........................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................TTACAGCTGAGACGCACGGGCATGATT...............................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................TTGTCGGATCTTTCACCAAAC................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATCGCAATAACAGTCAATCGGGT.....	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................CACCAAACTTTCATCGCAATAACAG...............	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATCGCAATAACAGTCAATCGGGTG....	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAA...........................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAAGGTATT.....................................................................................................................	26	1	1.00	1	0	0	0	0	0	1

droGri2

ATTCAAACTGGAGGCATCACCATTTTTGGACGCATCGAAAGCTATTCGTGGTAAATTTGCCTTGTTCCCTTTCTT--------------------A-------T-TATATATATT-GATTTATT-------------T--G-TTTTTGTTTAGCAAAATGGTTGCAGCGGAGAAGGTGTTGTACAAGCGCTTTACGGCAGAGACACACGGACATGATCTGCAAGCGTTGTCGCCACCGCAAACTCTGTCGGATCTGTCGCCCAATTTTCATCGGAACAACAGTCAGTCCGGCGATGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................GGACGCATCGAAAGCTATTCGT........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
.................................................................................................................................................................................................................GACATGATCTGCAAGCGTT.....................................................................	19	1	1.00	1	0	1
............................................................................................................................................................................................................ACACGGACATGATCTGCAAGCGTTGTC..................................................................	27	1	1.00	1	0	1

droAna3

CAACAAAG---------------------------------------------------------------------------------CAAA----------TATGAAATTA----TTACATT--------AGAT-T--TTTTTTTTTTAAGCAAAATGGTAGCAGCTGAAAAAGTTTTATATAAGAGATTTACTGCTGAATCGCATGGACACGATCTTCAGGCATTGTCTCCACCGCAAACTCTGGTCGACTTTTCACCAAACTTTCGACGAAACAATAGCCAGTCTGGAGATGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................TGGACACGATCTTCAGGCATT.....................................................................	21	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................ACTCTGGTCGACTTTTCACCAAACTTT.............................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................GCATTGTCTCCACCGCAAACTCT...................................................	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................GACACGATCTTCAGGCATTGTCTC................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................AGGCATTGTCTCCACCGCAAACTCTG..................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................GATTTACTGCTGAATCGCATGGACAC...................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................AAAATGGTAGCAGCTGAAAAA..........................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................TTTCACCAAACTTTCGACGAAAC....................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................GTCTCCACCGCAAACTCTG..................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................ATAAGAGATTTACTGCTGAATCGCAT.........................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................TCTTCAGGCATTGTCTCCACCGC..........................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................ATGGACACGATCTTCAGGCATT.....................................................................	22	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................GGACACGATCTTCAGGCATT.....................................................................	20	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................GATCTTCAGGCATTGTCTCCACC............................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................AAGAGATTTACTGCTGAATCG............................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................CTTCAGGCATTGTCTCCACCGCAAACTCT...................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................AAATGGTAGCAGCTGAAAA...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................CTTCAGGCATTGTCTCCACCGC..........................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................TGAATCGCATGGACACGATCTTCAGGCA.......................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................GGACACGATCTTCAGGCATTGTCTCCACC............................................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................ATGGACACGATCTTCAGGCATTGTCTCC...............................................................	28	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................TCACCAAACTTTCGACGAAACAATAGCCA............	29	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................GCAAAATGGTAGCAGCTGA..............................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................AATGGTAGCAGCTGAAAAAGTTTTATA..................................................................................................................	27	1	1.00	1	0	0	0	0	1	0

droBip1

ACTAAAAAAAA---------------------------------------------------------------------------------------------------ATTTA-TTTGTATATAA--TTT-----TA-TTTTTATTCTAAGCAAAATGGTAGCAGCTGAGAAGGTTTTATACAAAAGATTTACTGCTGAGACGCATGGACATGATCTTCAGGCATTGTCACCACCACAAACACTGGTTGACTTTTCACCAAACTTTCGTCGAAACAATAGCCAGTCTGGAGATGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T--------------------------------------------------------------------------------------------------------------------------------------------ATTTATTTTTAGTAAAATGGTTGCAGCTGAAAAAGTTTTGTATAAGCGATTTACGGCTGAAACTCATGGGCATGACCTTCAGGCACTATCGCCTCCTCAAACGTTGACCGACTTTTCACCTAACTTTCGTCGGACCAACAGCCAATCAGGAGATGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATACAAACAAGTGGAATCACAATCTTTGGTCGCATAGAAAGTTACTCGTGGTAGGTGTTGCAAATTA------------------------------------CATTTAACGATT-TTAAAGTT-------------T--G-TTTTATTTTAGCAAAATGGTTGCAGCTGAGAAAGTATTGTATAAACGATTTACGGCAGATACTCATGGCCATGACCTTCAAGCGTTATCACCACCCCAAACTTTGGCAGACTTTTCGCCTAACTTTCGTCAAAACAACAGTCAATCCGGGGATGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATACAAACAAGTGGTATCACAATCTTCGGTCGTATAGAAAGTTACTCATGGTAAGTTCCTTAAAACA------------------------------------CATAAAAC-ATT-TTTAAATT-------------T--GTATTTATTTCAGCAAAATGGTTGCAGCCGAGAAAGTGTTGTATAAACGATTTACAGTAGACACTCATGGGCATGACCTTCAGGCGCTATCACCCCCCCAAACTTTGACTGACTTTTCGCCCAACTTTCGCCGGCACAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATACAAACAAGCGGTATCACTATCTTCGGGCGCATAGAAAGTTACTCATGGTAAGTTTCCTAAAATA------------------------------------CATCTAACT-TT-TTTTAAGT-------------G--TTATTTATTATAGCAAAATGGTGGCAGCTGAGAAAGTATTGTATAAACGATTCACAGCAGATACTCATGGACACGACCTTCAGGCGCTATCACCACCCCAAACCTTGACTGACTTTTCCCCTAACTTTCGCCGAAACAACAGCCAGTCTGGAGATGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATACAAACAAGTGGAATAACGATCTTTGGTCGCATAGAAAGTTATTCATGGTATGTCCCTAAAATTA------------------------------------TTTAAAAAATGATTCAAAACT--A----------A--TTAATTTTTTTAGCAAAATGGTTGCAGCTGAAAAAGTACTGTATAAACGATTTACAGCAGATACTCATGGGCATGACCTTCAGGCGTTATCACCACCCCAAACTTTGTCTGACTTTTCGCCTAACTTTCGGCAAAACAACAGTCAGTCTGGAGATGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATACAAACAAGTGGAATTACAATTTTTGGTCGCATAGAAAGTTATTCATGGTATGTTCTTTATATTA----------------------------ACAATGTATATCAAACTTTT-TTTAAACT-------------A--GTATTTGTTTTAGCAAAATGGTCGCAGCTGAAAAAGTTTTATATAAACGGTTTACAGCAGATACACATGGGCATGACCTTCAGGCGCTATCACCTCCTCAAACATTGTCTGATTTTTCGCCAAACTTTCGCCGAAACAACAGTCAGTCCGGTGATGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATAAAAACAAGTGGAATCACGATCTTTGGCCGCATAGAAAGTTACTCATGGTATGTTGCGTATGTTA------------------------------------CGTTTAAAGTTT-TTTAAATT-------------T--GAATTTATTTTAGCAAAATGGTTGCAGCTGAAAAAGTATTGTATAAACGTTTTACAGCAGATATGCATGGGCATGATCTTCAAGCGCTGTCACCACCCCAAACTTTGACAGACTTTTCGCCTAACTTTGGCCGAAATAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATACAAACAAGTGGCATCACGATTTTTGGACGGATAGAAAGTTACTCATGGTATGTTTTTTTAGTTA------------------------------------CATAGAAATATT-TTTTAATT-------------C--ATCTTCATTATAGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCTGACTTTTCACCAAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................TCACGATTTTTGGACGGATAGAAAGT...............................................................................................................................................................................................................................................................	26	2	24.50	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	1	9	0	4	1	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	4	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0
.........................................................................................................................................................................................................TTCTCATGGGCATGACCTTCAGGCGT......................................................................	26	2	22.00	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	0	9	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	12	0	0	0	0	0
..........................................................................................................................................................................................................TCTCATGGGCATGACCTTCAGGCGT......................................................................	25	2	16.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	3	0	0	3	5	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	7	0	0	0	0	0
.......................TTTTGGACGGATAGAAAGTTACTCA.........................................................................................................................................................................................................................................................	25	2	13.50	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	9	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................TATTGTATAAACGATTTACAGCAGA................................................................................................	25	2	12.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	4	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0
............................................................................................................................................................................................................TCATGGGCATGACCTTCAGGCGT......................................................................	23	2	11.50	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	7	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	0
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..............CATCACGATTTTTGGACGGA.......................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAGATTCTCATGGGCATGAC................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATTCAAACAAGTGGCATCACGATTTTTGGAAGGATAGAAAGTTACTCATGGTATGTTTATTTAGTTA------------------------------------CATAAAAATATT-TTTTAATT-------------T--ATCTTCATTATAGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACGTTGACTGACTTTTCACCCAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAAACAACAGTC.............	27	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAAAC....................	20	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TCACCCAACTTTCGTCGAAACAACA................	25	1	3.00	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTACAGCAGATTCTCATGGGCATGACC...............................................................................	28	1	3.00	3	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0
.......................TTTTGGAAGGATAGAAAGTTACTCA.........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
..............CATCACGATTTTTGGAAGGATAGAAA.................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCCACAAACGTTGACTGACTTTTCACCC...................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................TGGAAGGATAGAAAGTTACTCATGGTA....................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GACTTTTCACCCAACTTTCGTCGA.......................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCACGATTTTTGGAAGGATAGAAAGT...............................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTACAGCAGATTCTCATGGGCATGACCT..............................................................................	29	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GACTTTTCACCCAACTTTCGT..........................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TACAGCAGATTCTCATGGGCATGACCT..............................................................................	27	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................ACCTCCACAAACGTTGACTGACTTT.........................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGTATAAACGATTTACAGCAGATTCTCA..........................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................TATAAACGATTTACAGCA..................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................ACCCAACTTTCGTCGAAACAAC.................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATCACGATTTTTGGAAGGATAGAAAGT...............................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.........AGTGGCATCACGATTTTTGGAAGGA.......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ATAAACGATTTACAGCAG.................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAAACAACAGT..............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CCACAAACGTTGACTGACT...........................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TCACCCAACTTTCGTCGAAACAACAGT..............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTTTCACCCAACTTTCGTCGAA......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CGTCGAAACAACAGTCAATCTGG......	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCCACAAACGTTGACTGACTTTTCACC....................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CAGGCGTTATCACCTCCACAAACGTTGA.................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GGTTGCGGCCGAGAAAGTA.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACGATTTACAGCAGATTCTCATGGGCA....................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................TTACAGCAGATTCTCATGGGCATGACCT..............................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................TTTTTGGAAGGATAGAAAGTTACTCA.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........TGGCATCACGATTTTTGGAAGGATAGA...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............ATCACGATTTTTGGAAGGAT......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GTTGACTGACTTTTCACC....................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GACCTTCAGGCGTTATCA.................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GACTTTTCACCCAACTTTCGTCGAA......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATCACGATTTTTGGAAGG........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTTCACCCAACTTTCGTCGAAACAACA................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................CAGCAGATTCTCATGGGCATGAC................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................CCCAACTTTCGTCGAAACAACAGTCA............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGGCATCACGATTTTTGGAAGGATAG....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAAACAACA................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGAAGGATAGAAAGTTACT...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................TTTTTGGAAGGATAGAAAGTT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GACTGACTTTTCACCCAACTTTCGTCGAA......................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TTCGTCGAAACAACAGTCAATCTGGAGA...	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTTTCACCCAACTTTCGTCGAAACA...................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GAAAGTATTGTATAAACGATTTACAGC...................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGCGGCCGAGAAAGTATTGTATAAACGAT..........................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAA......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAAACGATTTACAGCAGATTCTCATGG.......................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................TATTGTATAAACGATTTACAGCAGA................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........GTGGCATCACGATTTTTGGAAGGAT......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CTCCACAAACGTTGACTGACTT..........................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTTTGGAAGGATAGAAAGTTACTCAT........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GACTTTTCACCCAACTTTCGTCGAAAC....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGACTTTTCACCCAACTTTCGTCGAAA.....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTTCGTCGAAACAACAGTCAATCTGG......	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CCAACTTTCGTCGAAACAACAGT..............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TTCACCCAACTTTCGTCGAAACAA..................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CAAACGTTGACTGACTTTTCACCCAAC................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTTTCACCCAACTTTCGTC.........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GGTTGCGGCCGAGAAAGTATT.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................CCACAAACGTTGACTGACTTT.........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................ACCCAACTTTCGTCGAAAC....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCTCATGGGCATGACCTTCAGGCGTT.....................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................TGCGGCCGAGAAAGTATTGTATAAACGA...........................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AACGTTGACTGACTTTTCACCC...................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CTCCACAAACGTTGACTGACTTTT........................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TCACCCAACTTTCGTCGAAAC....................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAACGATTTACAGCAGATTCTC...........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CGAGAAAGTATTGTA..................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ATTCAAACAAGTGGCATCACGATTTTTGGAAGGATAGAAAGTTACTCATGGTATGTTTATTTAGTTA------------------------------------CATAAAAATATT-TTTTAATT-------------T--ATCTTCATTATAGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACGTTGACTGACTTTTCACCCAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............ATCACGATTTTTGGAAGGATAGAAA.................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0
...............ATCACGATTTTTGGAAGGATAGAA..................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0
......................................................................................................................................................................................ATAAACGATTTACAGCAGATTCT............................................................................................	23	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................ATCACCTCCACAAACGTTGACTGACTTTT........................................	29	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................CATGGGCATGACCTTCAGGCGT......................................................................	22	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................TCCACAAACGTTGACTGACTTTTCA......................................	25	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................TTACAGCAGATTCTCATGGGCAT...................................................................................	23	1	1.00	1	0	0	1	0
..................ACGATTTTTGGAAGGATA.....................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.....................ATTTTTGGAAGGATAGAA..................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................AAATGGTTGCGGCCGAGAAA..........................................................................................................................	20	1	1.00	1	0	1	0	0
.........AGTGGCATCACGATTTTTGGA...........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................ACGATTTACAGCAGATTCTCA..........................................................................................	21	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................GATTCTCATGGGCATGAC................................................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................AAAATGGTTGCGGCCGAGAAAGTATTGT...................................................................................................................	28	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................GACTTTTCACCCAACTTTCGTCGAAACAAC.................	30	1	1.00	1	0	1	0	0
.........AGTGGCATCACGATTTTTGGAAGGAT......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
................................GATAGAAAGTTACTCATGC......................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
............GGCATCACGATTTTTGGAAGGATAGAA..................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.........AGTGGCATCACGATTTTTGGAAGGA.......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................ACCCAACTTTCGTCGAAACAACAGTC.............	26	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................CGTCGAAACAACAGTCAATCTGGA.....	24	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAAAC....................	20	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................CACCCAACTTTCGTCGAAACAACAGTC.............	27	1	1.00	1	1	0	0	0

droYak3

ATACAAACAAGTGGCATCACGATTTTTGGACGTATAGAAAGTTACTCATGGTATGTTTATTTAGTTA------------------------------------TATAAAACAATA-TATTAAAT-------------G--GTCTTTATTATAGCAAAATGGTTGCAGCTGAGAAAGTATTGTATAAACGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCTGACTTTTCGCCCAACTTTCGGCGAAACAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................CTTTCGGCGAAACAACAGTCAATCTGGAGAT..	31	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAAA..........................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................AGCAGATTCTCATGGGCAT...................................................................................	19	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
............GGCATCACGATTTTTGGACGT........................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................ATGGTTGCAGCTGAGAAAGTATTGTAT.................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAAAGTATTGT...................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................GCAAAATGGTTGCAGCTGAGAAAGT........................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GCAAAATGGTTGCAGCTGAG.............................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TCATGGGCATGACCTTCAGGCGT......................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TTGGCTGACTTTTCGCCCAACTTTCGGC.........................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CCACAAACTTTGGCTGACTTTTC.......................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................CGTATAGAAAGTTACTCAT........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GATTTACAGCAGATTCTCATGGGCAT...................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAAAGTATT.....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................ATAAACGATTTACAGCAGATT..............................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GACTTTTCGCCCAACTTTCGGCGAA......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTACAGCAGATTCTCATGGGCATGACC...............................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........AGTGGCATCACGATTTTTGGACGT........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGA............................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................CAAAATGGTTGCAGCTGAGAAAGT........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................CAAAATGGTTGCAGCTGAGAAA..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................CAAAATGGTTGCAGCTGAGAAC..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................GTTATCACCTCCACAAACTTTGGC................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAAAGTAT......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TGGCTGACTTTTCGCCCAACTTTCGGCG........................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GGCGAAACAACAGTCAATCTGGAGAT..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................AGATTCTCATGGGCATGACCTTCAGG.........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CTTCAGGCGTTATCACCTCC............................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCTGAGAAAGTATTGTA..................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ATACAAACAAGTGGCATTACTATTTTTGGACGGATAGAAAGTTATTCATGGTATGTTTATTTAGTTA------------------------------------CACAAAACTATT-TTTTAAAT-------------G--GTCTTCATTATAGCAAAATGGTTGCAGCCGAGAAAGTATTGTATAAGCGATTTACAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCGGACTTTTCGCCCAACTTTCGTCGAAACAACAGTCAATCTGGAGATGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................TTCTCATGGGCATGACCTTCAGGCGTTA....................................................................	28	1	25.00	25	1	0	0	0	0	0	24
.........................................................................................................................................................................................................TTCTCATGGGCATGACCTTCAGGCGTT.....................................................................	27	1	14.00	14	0	0	0	0	0	0	14
..........................................................................................................................................................................................................................................................................TTCGTCGAAACAACAGTCAATCTGGAGA...	28	1	6.00	6	0	0	0	0	0	0	6
............................................................................................................................................................................................................................................................................CGTCGAAACAACAGTCAATCTGGAGATG.	28	1	4.00	4	0	0	0	0	0	0	4
.................................................................................................................................................................................................................................GTTATCACCTCCACAAACTTTGGC................................................	24	1	2.00	2	0	1	0	0	0	1	0
..................................................................................................................................................................TGCAGCCGAGAAAGTATT.....................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................................................................TGCAGCCGAGAAAGTATTGT...................................................................................................................	20	1	2.00	2	0	0	0	0	1	1	0
...................................................................................................................................................................................................AGCAGATTCTCATGGGCAT...................................................................................	19	1	2.00	2	0	0	0	1	1	0	0
...........................................................................................................................................................AAATGGTTGCAGCCGAGAA...........................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................................TCTCATGGGCATGACCTTCAG..........................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................ATTCTCATGGGCATGACCTTCAGGCGT......................................................................	27	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................TACAGCAGATTCTCATGGGCATGACCT..............................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................AAAATGGTTGCAGCCGAGAAAGT........................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................ACAGCAGATTCTCATGGGCATGACC...............................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................CTTCAGGCGTTATCACCTCCACA.........................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................TCGTCGAAACAACAGTCAATCTGGAGA...	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................AAATGGTTGCAGCCGAGAAAGTATTGT...................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................TGGGCATGACCTTCAGGCGTTATCACC...............................................................	27	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................TACAGCAGATTCTCATGGGCATGAC................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................GGTTGCAGCCGAGAAAGTATTGT...................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................AACAACAGTCAATCTGGAGATG.	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TTCGCCCAACTTTCGTCGAAACAACAG...............	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCGTCGAAACAACAGTCAATCT........	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................TGCAGCCGAGAAAGTATTGTATAAGC.............................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...........................GGACGGATAGAAAGTTATTCATGGT.....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...............ATTACTATTTTTGGACGGA.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................ATGGGCATGACCTTCAGGCGT......................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............ATTACTATTTTTGGACGGAT......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................TTGGCGGACTTTTCGCCCAACT...............................	22	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GACTTTTCGCCCAACTTTCGTC.........................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................TGGGCATGACCTTCAGGCGTTATCAC................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................GTTATCACCTCCACAAACTTTGGCG...............................................	25	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................AGCGATTTACAGCAGATTCTCATGGGCA....................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................GTATAAGCGATTTACAGCA..................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................TATTGTATAAGCGATTTACAGCAGA................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTTTCGCCCAACTTTCGTCGAA......................	23	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................TTGCAGCCGAGAAAGTATTGT...................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................TTCTCATGGGCATGACCTTCAGGC........................................................................	24	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................TCTCATGGGCATGACCTTCAGGCGTTA....................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTTCGTCGAAACAACAGTCAATCTGGA.....	27	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................AAATGGTTGCAGCCGAGAAA..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................TTTTGGACGGATAGAAAGTT..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................TCCACAAACTTTGGCGGACTTTTC.......................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTTCGTCGAAACAACAGTCAATCTGGAA....	28	1	1.00	1	0	0	0	0	0	0	1

dpe_512

scaffold_1:1206122-1206272 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.3	-12.9	-12.7