dpe_509

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATAGTGCATCCTTTTTGTTATGAAGGGCTCCCTCGATGGTGGCTACTAGCGAATGCAGTATCGTTTCCACCGATTACCCTTTTGGTGTAAGCATACTGGTTTGTTGACATCAGTCCCCTACATAATTCCTGATGTGTAAATCCAGCAGTTTTTTCAAAGTTTTTAATTGAAATTTTTACCTTTCTTAATTTACTGTTTCAGCTATAAAAAACCAGTTGCTCTCCCGGCTCAAAAATATATTGAACACCTAA **********************************************************************************************.((((((...(((((((...............))))))).)))))).**********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body
................................................................................................TGGTTTGTTGACATCAGTCCC......................................................................................................................................	21	0	20	0.15	3	3
.............................................................................................................................................................................................TTACAGTTGCAGCTATAAAA..........................................	20	2	18	0.06	1	1
................................................................................................TGGTTTGTTGACATCAGTCA.......................................................................................................................................	20	1	20	0.05	1	1
............................................................................................................................ATTCCTGATGTGTAAATCC............................................................................................................	19	0	20	0.05	1	1

TATCACGTAGGAAAAACAATACTTCCCGAGGGAGCTACCACCGATGATCGCTTACGTCATAGCAAAGGTGGCTAATGGGAAAACCACATTCGTATGACCAAACAACTGTAGTCAGGGGATGTATTAAGGACTACACATTTAGGTCGTCAAAAAAGTTTCAAAAATTAACTTTAAAAATGGAAAGAATTAAATGACAAAGTCGATATTTTTTGGTCAACGAGAGGGCCGAGTTTTTATATAACTTGTGGATT **********************************************************************************************************.((((((...(((((((...............))))))).)))))).**********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body	V111 male body
.........................................................................................................CTGTAGTAAGGGGATGTCATAAG...........................................................................................................................	23	3	1	1.00	1	1	0	0
.................................................................AGGTGGCTTATGGGGAAA........................................................................................................................................................................	18	2	9	0.22	2	1	1	0
.....................................................................................ACATTCGTGTGATCCAACAA..................................................................................................................................................	20	3	9	0.11	1	1	0	0
....................................................................................................................................................................................................................GTCCACGAGAGGGTCGAG.....................	18	2	14	0.07	1	1	0	0
..........................................................................................................TGTCGTCAGGCGATGTAGT..............................................................................................................................	19	3	14	0.07	1	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:1035209-1035459 -	dpe_509	ATAGTGCATCCTTTTTGTTATGAAGGGCTCCCTCGATGGTGGCTACTAGCGAATGCAGTATCGTTTCCACCGATTACCCTTTTGGTGTAAGCATACTGGTTTGTTGACATCAGTC-CCCTACATAATTCCTGAT--GTG-TAAATCCAGC--------------------AGTTTTTTCAAAGTTTTTAATTGAAATTTTTACCTTTCTTAA---------TTTACTGTTTCAGCTATAAAAAACCAGTTGCTCTCCCGGCTCAAAAATATATTGAACACCTAA
dp5	Unknown_group_53:37081-37252 -		CCAAAGCATACTTTTTGTTGTGAAGGGCGCTCTCGATGGTGGCTACTAGCGAGTGTAGTGCCGTCTCCACTGATTTCCCC-TTGGTGTAGGCGTGTTGGTTTGTTGACATCAGTCCCCCTACCTC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAACAGCTTTTCTAGT--------GTTTTTAGTAG-AAA
droWil2	scf2_1100000004967:4173066-4173127 -		AATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATAGGTATAAGAAACCGACTGCACTCCCAGCCAAGAAATATATTGAACTTTTGA
droVir3	scaffold_12963:2020250-2020305 +		TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTACAAGAAACCCACTGCGCTTCCTGCACAGAAATATATTGAGCTTCTCA
droMoj3	scaffold_6500:27146431-27146511 +		AATTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAT---------TTGCAA---------TATTAAATTGTAGATACAAAAAACCCACTGCTCTGCCTGCACAAAAATATATTGAGTTGCTAA
droGri2	scaffold_15126:1022540-1022598 +		CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCAGATATAAGAAACCCACTGCGCTGCCTGCACAGAAATATATTGAGCTGCTCA
droAna3	scaffold_12916:14097793-14097885 +		AGCAGATATTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTTAA---CACAT---------ATTC------------ATCTTTTTTTAGATATAAAAAACCAACAGCTCTCTCAGCTCAAAAATATATAGAGCATCTAA
droBip1	scf7180000396572:2859361-2859416 -		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGATATAAAAAACCAACAGCTCTTTCAGCTCAGAAATATATAGAGCATTTAA
droKik1	scf7180000301574:3229-3401 +		CAAGTGCATACTCCTTATTGTTTAGGGCTCTCTCAATGGTGGCTACCAACGAATGTAGTGCCGTCTCCACTGATTTCCCC-TTCGTGTAGGCATGCTGGTTGGTCGACAGTTGTCTCCCTACATC------------------------------------------------------------------------------------------------------GTTCCTGATGTATAGCTCCAGCAGCTTTTCCAGA--------GTTTTAAGTAGAAAT
droFic1	scf7180000453838:496204-496268 +		AATTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTAGCTATAAAAAGCCAACCGCACTCTCAGCTCAGAAGTATATTGAGCATTTAA
droEle1	scf7180000490421:12622-12842 -		CTAGGGCATATTCCTTG-TGCAAAGTGCCTTCTCGATGGTAGCTACTAGCGAGTGTAGTGCCGTCTCCACCGATTCTCCT-TTGGTGTTTGCGTGCTGGTTGGTTGACATTAGTATCTCCACATCGATCCTGATCAGTGCTGCATTCGGATTTTAGTTGCTATTTATGGCAACTTTCCAAAAAA----TGTTGAGACTTTTAT------------------------------------------------TTTTTTAATT--------GCTGTTAGCCA-CAA
droRho1	scf7180000762898:51847-51909 +		TTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTCAGATACAAAAAGCCAACAGCCCTCTCCGCCCAGAAATATATTGAACATTTAA
droBia1	scf7180000302246:10561-10669 -		TT----------------------------------------------------------------CCTTAGATTTCTCT-TTGGTGTAGGGGTGCTGGTTGGAATACAGGTGTCTCCCTACATC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAGATCTAGCAGCTTTTCTA--------ATGTTTTGAGTATGAAA
droTak1	scf7180000413458:31182-31353 +		CAAGCGCATATTCTTTAATGTGTAGGGCTCTCTCAACGGTTGCTACTAGCGAGTGTAGTGCCGTTTCCACAGATTTTCCC-TTGGTGTAGGCGTGCTGGTTGGATGACATGAGCCTCCCTACATT------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAGATCCAGCAGCTTTTCCAGT--------GTCTTGAGTAT-AAA
droEug1	scf7180000409554:4656316-4656414 -		TAAATAAAGTTTATAAATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------TCCCAATTAAGTATATATATAATTTTAGATACAAAAAGCCAACCGCCCTCTCAGCACAGAAATATATTGAGCACCTAA
dm3	chr2L:10265996-10266056 +		TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCAGATACAAAAAGCCAACCGCCCTTTCAGCCCAAAAGTACATTGAGCATTTAA
droSim2	2l:9943844-9943904 +		TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCAGATACAAAAAGCCAACCGCCCTCTCAGCCCAAAAGTACATTGAGCATTTAA
droSec2	scaffold_3:5691145-5691205 +		TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCAGATACAAAAAGCCAACCGCCCTCTCAGCCCAAAAGTACATTGAGCATTTAA
droYak3	v2_chrUn_645:21781-21947 +		CGAGAGCATATTTTTGGTTATGCAGGGCTTTCTCAATGGTGACTACTAATGAGTGTAGTGCCGTCTCCACTGATTTACCT-TTCGTGTAAGCATGCTGGTTGGATGACAGTAGTCGTCCTGCATC------------------------------------------------------------------------------------------------------ATTTCTGATGTGTACGTCCAGCAGCTTTTCTAGC--------GTCTTTAGT------
droEre2	scaffold_4929:10872306-10872367 +		TTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTCAGATACAAGAAGCCTACCGCCCTTTCAGCGCAGAAATACATTGAGCATTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ATAGTGCATCCTTTTTGTTATGAAGGGCTCCCTCGATGGTGGCTACTAGCGAATGCAGTATCGTTTCCACCGATTACCCTTTTGGTGTAAGCATACTGGTTTGTTGACATCAGTC-CCCTACATAATTCCTGAT--GTG-TAAATCCAGC--------------------AGTTTTTTCAAAGTTTTTAATTGAAATTTTTACCTTTCTTAA---------TTTACTGTTTCAGCTATAAAAAACCAGTTGCTCTCCCGGCTCAAAAATATATTGAACACCTAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................TGGTTTGTTGACATCAGTC-CC......................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
................................................................................................TGGTTTGTTGACATCAGTC-A.......................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................ATTCCTGAT--GTG-TAAATCC.........................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

dp5

CCAAAGCATACTTTTTGTTGTGAAGGGCGCTCTCGATGGTGGCTACTAGCGAGTGTAGTGCCGTCTCCACTGATTTCCCC-TTGGTGTAGGCGTGTTGGTTTGTTGACATCAGTCCCCCTACCTC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAACAGCTTTTCTAGT--------GTTTTTAGTAG-AAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............TTTGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	23	18	41.83	753	0	713	7	1	3	0	5	18	5	1
.............TTTGTTGTGAAGGGCGCTCTCGATG......................................................................................................................................................................................................................................................	25	18	19.94	359	1	333	0	0	3	0	12	8	2	0
.............TTTGTTGTGAAGGGCGCTCTCG.........................................................................................................................................................................................................................................................	22	18	18.94	341	0	316	2	0	6	0	4	8	5	0
.............TTTGTTGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	24	18	15.56	280	1	256	5	0	3	0	4	10	1	0
...............TGTTGTGAAGGGCGCTCTCGATGG.....................................................................................................................................................................................................................................................	24	17	13.59	231	0	134	0	0	3	1	2	62	29	0
.............TTTGTTGTGAAGGGCGCTCTCGATGG.....................................................................................................................................................................................................................................................	26	17	9.94	169	0	160	1	0	1	0	2	3	2	0
...............TGTTGTGAAGGGCGCTCTCGATG......................................................................................................................................................................................................................................................	23	18	7.00	126	0	108	1	0	2	0	0	4	11	0
..............TTGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	22	18	3.39	61	0	61	0	0	0	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	21	18	3.17	57	0	27	0	0	0	0	2	16	12	0
.............TTTGTTGTGAAGGGCGCTCTC..........................................................................................................................................................................................................................................................	21	19	3.16	60	0	53	2	0	0	0	5	0	0	0
...............TGTTGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	22	18	2.28	41	0	25	1	0	2	0	1	7	5	0
..............TTGTTGTGAAGGGCGCTCTCGATG......................................................................................................................................................................................................................................................	24	18	2.17	39	0	38	0	0	0	0	0	1	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCCCTACC.................................................................................................................................................................	27	16	1.88	30	0	26	1	0	0	0	0	1	2	0
.............TTTGTTGTGAAGGGCGCTCT...........................................................................................................................................................................................................................................................	20	19	1.68	32	0	28	1	0	1	0	1	1	0	0
.............TTTGTTGTGAAGGGCGCTCTCGATA......................................................................................................................................................................................................................................................	25	18	1.61	29	0	28	1	0	0	0	0	0	0	0
....AGCATACTTTTTGTTGTGAAGGGC................................................................................................................................................................................................................................................................	24	17	1.29	22	0	14	0	0	6	0	1	1	0	0
............TTTTGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	24	18	1.28	23	0	18	0	0	0	0	0	4	1	0
..............TTGTTGTGAAGGGCGCTCTCGATGG.....................................................................................................................................................................................................................................................	25	17	1.18	20	0	16	1	0	0	0	0	0	3	0
...............TGTTGTGAAGGGCGCTCTCG.........................................................................................................................................................................................................................................................	20	18	1.17	21	0	16	0	0	1	0	1	1	2	0
..............TTGTTGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	23	18	1.11	20	0	19	0	0	0	0	0	1	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCCC.....................................................................................................................................................................	23	19	1.11	21	0	20	0	0	0	0	0	0	1	0
....AGCATACTTTTTGTTGTGAAGGG.................................................................................................................................................................................................................................................................	23	18	1.06	19	0	17	0	0	1	0	1	0	0	0
.............TTTGTTGTGAAGGGCGCTC............................................................................................................................................................................................................................................................	19	19	1.05	20	0	17	0	0	1	0	2	0	0	0
..............TTGTTGTGAAGGGCGCTCTCG.........................................................................................................................................................................................................................................................	21	18	1.00	18	0	18	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGAA.......................................................................................................................................................................................................................................................	24	18	0.89	16	0	16	0	0	0	0	0	0	0	0
..............................................TAGCGAGTGTAGTGCCGTCTCCA.......................................................................................................................................................................................................................	23	20	0.85	17	0	14	0	0	0	0	0	0	3	0
................................................................................................TGGTTTGTTGACATCAGTCCCCCTA...................................................................................................................................................................	25	18	0.83	15	0	15	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGATT......................................................................................................................................................................................................................................................	25	18	0.83	15	0	14	0	0	0	0	1	0	0	0
........TACTTTTTGTTGTGAAGGGCGCTC............................................................................................................................................................................................................................................................	24	17	0.82	14	0	13	0	0	0	0	0	1	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCCCTAC..................................................................................................................................................................	26	18	0.78	14	0	12	0	0	0	0	0	0	2	0
...............................................................TCTCCACTGATTTCCCC-TTGGTG.....................................................................................................................................................................................................	23	8	0.75	6	0	6	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGT........................................................................................................................................................................................................................................................	23	18	0.72	13	0	12	0	0	1	0	0	0	0	0
................GTTGTGAAGGGCGCTCTCGATGG.....................................................................................................................................................................................................................................................	23	17	0.71	12	0	12	0	0	0	0	0	0	0	0
.......................................TGGCTACTAGCGAGTGTAGTGC...............................................................................................................................................................................................................................	22	20	0.70	14	0	7	0	0	3	1	3	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGAAA......................................................................................................................................................................................................................................................	25	18	0.67	12	0	12	0	0	0	0	0	0	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCCCT....................................................................................................................................................................	24	18	0.67	12	0	12	0	0	0	0	0	0	0	0
..................TGTGAAGGGCGCTCTCGATGGTGGC.................................................................................................................................................................................................................................................	25	20	0.65	13	0	1	0	0	0	0	0	12	0	0
....................................TGGTGGCTACTAGCGAGTGTAGTG................................................................................................................................................................................................................................	24	17	0.59	10	0	9	0	0	1	0	0	0	0	0
...........TTTTTGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	25	18	0.56	10	0	6	0	0	1	0	0	2	1	0
..............................................TAGCGAGTGTAGTGCCGTCTCC........................................................................................................................................................................................................................	22	20	0.50	10	0	10	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTC..........................................................................................................................................................................................................................................................	20	19	0.47	9	0	8	0	0	0	0	0	1	0	0
................GTTGTGAAGGGCGCTCTCGATG......................................................................................................................................................................................................................................................	22	18	0.44	8	0	8	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGAC.......................................................................................................................................................................................................................................................	24	18	0.44	8	0	2	6	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	28	17	0.41	7	0	4	0	0	0	0	0	0	3	0
.......................................TGGCTACTAGCGAGTGTAGTG................................................................................................................................................................................................................................	21	20	0.40	8	0	5	0	0	1	0	2	0	0	0
............TTTTGTTGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	25	18	0.39	7	0	4	0	0	0	0	0	3	0	0
...........................................................................TCCCC-TTGGTGTAGGCGTGTTGGTT.......................................................................................................................................................................................	25	8	0.38	3	0	2	0	0	0	0	1	0	0	0
..........................................................TGCCGTCTCCACTGATTTCCCC-TTGG.......................................................................................................................................................................................................	26	8	0.38	3	0	3	0	0	0	0	0	0	0	0
......................................................................TGATTTCCCC-TTGGTGTAGGC................................................................................................................................................................................................	21	8	0.38	3	0	3	0	0	0	0	0	0	0	0
.......................................TGGCTACTAGCGAGTGTAGTGCCGTC...........................................................................................................................................................................................................................	26	19	0.37	7	0	5	1	1	0	0	0	0	0	0
....................................TGGTGGCTACTAGCGAGTGTAGT.................................................................................................................................................................................................................................	23	17	0.35	6	0	1	0	0	3	0	2	0	0	0
....................TGAAGGGCGCTCTCGATGGTG...................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	0	7	0	0
..................TGTGAAGGGCGCTCTCGATGG.....................................................................................................................................................................................................................................................	21	20	0.35	7	0	6	0	0	0	0	0	1	0	0
.....GCATACTTTTTGTTGTGAAGGG.................................................................................................................................................................................................................................................................	22	18	0.33	6	0	6	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGC................................................................................................................................................................................................................................................................	20	18	0.33	6	0	1	1	0	1	0	2	0	1	0
...............TGTTGTGAAGGGCGCTCTCGATC......................................................................................................................................................................................................................................................	23	18	0.33	6	0	0	0	0	0	0	0	0	6	0
...............TGTTGTGAAGGGCGCTCTC..........................................................................................................................................................................................................................................................	19	19	0.32	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................TTGGTTTGTTGACATCAGTCCCCC.....................................................................................................................................................................	24	19	0.32	6	0	5	0	0	0	0	0	0	1	0
...............TGTTGTGAAGGGCGCTCTCGATGGT....................................................................................................................................................................................................................................................	25	17	0.29	5	0	1	0	0	0	0	1	1	2	0
...............TGTTGTGAAGGGCGCTCTCGATA......................................................................................................................................................................................................................................................	23	18	0.28	5	0	4	0	0	1	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGT........................................................................................................................................................................................................................................................	21	18	0.28	5	0	5	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGATA......................................................................................................................................................................................................................................................	24	18	0.28	5	0	5	0	0	0	0	0	0	0	0
................GTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	20	18	0.28	5	0	5	0	0	0	0	0	0	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCC......................................................................................................................................................................	22	19	0.26	5	0	5	0	0	0	0	0	0	0	0
................................TCGATGGTGGCTACTAGCGAGTGTAG..................................................................................................................................................................................................................................	26	16	0.25	4	0	4	0	0	0	0	0	0	0	0
...........................................TACTAGCGAGTGTAGTGCCGTCTCCAC......................................................................................................................................................................................................................	27	20	0.25	5	0	3	0	0	0	0	0	0	2	0
.........................................................................TTTCCCC-TTGGTGTAGGCGTG.............................................................................................................................................................................................	21	8	0.25	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................TGTAGGCGTGTTGGTTTGTTGA.................................................................................................................................................................................	22	20	0.25	5	0	1	0	0	0	0	0	0	4	0
......................................................................TGATTTCCCC-TTGGTGTAGGCGTGT............................................................................................................................................................................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0
......................................................................TGATTTCCCC-TTGGTGTAGGCGTG.............................................................................................................................................................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...............................................................TCTCCACTGATTTCCCC-TTGGT......................................................................................................................................................................................................	22	8	0.25	2	0	2	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGCGCT.............................................................................................................................................................................................................................................................	23	17	0.24	4	0	4	0	0	0	0	0	0	0	0
....................................TGGTGGCTACTAGCGAGTGTAGTGC...............................................................................................................................................................................................................................	25	17	0.24	4	0	2	0	0	0	0	2	0	0	0
.................................................................................................GGTTTGTTGACATCAGTCCCCCTACC.................................................................................................................................................................	26	18	0.22	4	0	4	0	0	0	0	0	0	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCCCTACT.................................................................................................................................................................	27	18	0.22	4	0	4	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGATGA.....................................................................................................................................................................................................................................................	26	18	0.22	4	0	4	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTA..........................................................................................................................................................................................................................................................	21	19	0.21	4	0	4	0	0	0	0	0	0	0	0
.......................................TGGCTACTAGCGAGTGTAGTGCCG.............................................................................................................................................................................................................................	24	19	0.21	4	0	3	0	0	1	0	0	0	0	0
...........................................................................................CGTGTTGGTTTGTTGACATCAGTCCCCC.....................................................................................................................................................................	28	15	0.20	3	0	0	0	0	0	0	0	0	3	0
..............................................................................................GTTGGTTTGTTGACATCAGTCCCC......................................................................................................................................................................	24	17	0.18	3	0	3	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGCGCTCT...........................................................................................................................................................................................................................................................	25	17	0.18	3	0	2	0	0	0	0	0	0	1	0
.........ACTTTTTGTTGTGAAGGGCGCTC............................................................................................................................................................................................................................................................	23	17	0.18	3	0	3	0	0	0	0	0	0	0	0
....................................TGGTGGCTACTAGCGAGTGTAG..................................................................................................................................................................................................................................	22	17	0.18	3	0	1	0	0	2	0	0	0	0	0
............TTTTGTTGTGAAGGGCGCTCTCG.........................................................................................................................................................................................................................................................	23	18	0.17	3	0	1	0	0	0	0	1	0	1	0
.............TTTGTTGTGAAGGGCGCTCTCGAAAA.....................................................................................................................................................................................................................................................	26	18	0.17	3	0	3	0	0	0	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGAA.......................................................................................................................................................................................................................................................	22	18	0.17	3	0	0	0	0	0	0	0	0	3	0
....AGCATACTTTTTGTTGTGAAGG..................................................................................................................................................................................................................................................................	22	18	0.17	3	0	3	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGATAA.....................................................................................................................................................................................................................................................	26	18	0.17	3	0	3	0	0	0	0	0	0	0	0
..........................................CTACTAGCGAGTGTAGTGCCGTCTC.........................................................................................................................................................................................................................	25	18	0.17	3	0	2	0	0	1	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGAAA......................................................................................................................................................................................................................................................	23	18	0.17	3	0	2	0	0	0	0	0	1	0	0
.............TTTGTTGTGAAGGGCGCTCTT..........................................................................................................................................................................................................................................................	21	19	0.16	3	0	1	0	0	0	0	2	0	0	0
.......................................................................................TAGGCGTGTTGGTTTGTTGACATCAG...........................................................................................................................................................................	26	19	0.16	3	0	1	0	0	0	0	1	0	1	0
.....................................GGTGGCTACTAGCGAGTGTAG..................................................................................................................................................................................................................................	21	19	0.16	3	0	2	0	0	0	0	1	0	0	0
.............TTTGTTGTGAAGGGCGCTA............................................................................................................................................................................................................................................................	19	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.....................................GGTGGCTACTAGCGAGTGTAGTGC...............................................................................................................................................................................................................................	24	19	0.16	3	0	2	0	0	1	0	0	0	0	0
.......................................TGGCTACTAGCGAGTGTAGTGCC..............................................................................................................................................................................................................................	23	19	0.16	3	0	2	0	0	0	0	0	0	1	0
...........................................................................................................................TC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAACAG.................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0
...............................................AGCGAGTGTAGTGCCGTCTCCA.......................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................TGAAGGGCGCTCTCGATGGT....................................................................................................................................................................................................................................................	20	20	0.15	3	0	1	0	0	0	0	0	2	0	0
....................TGAAGGGCGCTCTCGATGGTGGC.................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.......................................................TAGTGCCGTCTCCACTGATTTCC..............................................................................................................................................................................................................	23	20	0.15	3	0	2	1	0	0	0	0	0	0	0
.......................................TGGCTACTAGCGAGTGTAG..................................................................................................................................................................................................................................	19	20	0.15	3	0	2	0	0	0	0	1	0	0	0
.................TTGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...........................................TACTAGCGAGTGTAGTGCCGTCT..........................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	2	1	0
....................TGAAGGGCGCTCTCGATGGTGG..................................................................................................................................................................................................................................................	22	20	0.15	3	0	1	0	0	0	0	0	2	0	0
.......................................................................................TAGGCGTGTTGGTTTGTTGACAT..............................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................TGTGAAGGGCGCTCTCGATGGTGG..................................................................................................................................................................................................................................................	24	20	0.15	3	0	1	0	0	0	0	0	2	0	0
.............................................................................................................TCAGTCCCCCTACCTC------------------------------------------------------------------------------------------------------ATTCCTGATG...............................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................TTGTGAAGGGCGCTCTCGATG......................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................AGCGAGTGTAGTGCCGTCTC.........................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................TCCCCCTACCTC------------------------------------------------------------------------------------------------------ATTCCTGATGTG.............................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................TAGTGCCGTCTCCACTGATTTCCCC-TTG........................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................TCCACTGATTTCCCC-TTGGTGTAGGCG...............................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAAC...................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.......................................................TAGTGCCGTCTCCACTGATTTCCCC-T..........................................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................TGATTTCCCC-TTGGTGTAGGCGTGTG...........................................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................................GATTTCCCC-TTGGTGTAGGCG...............................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................TCTCCACTGATTTCCCC-TTGG.......................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....AGCATACTTTTTGTTGTGAAGGGCGCTC............................................................................................................................................................................................................................................................	28	16	0.13	2	0	1	1	0	0	0	0	0	0	0
................................................................................................TGGTTTGTTGACATCAGTCCCCCTACCT................................................................................................................................................................	28	16	0.13	2	0	2	0	0	0	0	0	0	0	0
...........................................................................TCCCC-TTGGTGTAGGCGTGTTG..........................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................TTGGTTTGTTGACATCAGTCCCCCTACC.................................................................................................................................................................	28	16	0.13	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................TTGGTTTGTTGACATCAGTCCCCCTACCT................................................................................................................................................................	29	16	0.13	2	0	0	0	0	0	0	0	0	2	0
..........................................................................TTCCCC-TTGGTGTAGGCGTGTT...........................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............................................................CCGTCTCCACTGATTTCCCC-TTGG.......................................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TTCCCC-TTGGTGTAGGCGTGTTGG.........................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................................GATTTCCCC-TTGGTGTAGGCGT..............................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................................TTTCCCC-TTGGTGTAGGCGTGT............................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....GCATACTTTTTGTTGTGAAGGGC................................................................................................................................................................................................................................................................	23	17	0.12	2	0	1	0	0	1	0	0	0	0	0
....AGCATACTTTTTGTTGTGAAGGGCGC..............................................................................................................................................................................................................................................................	26	17	0.12	2	0	2	0	0	0	0	0	0	0	0
......CATACTTTTTGTTGTGAAGGGC................................................................................................................................................................................................................................................................	22	17	0.12	2	0	1	0	0	0	0	1	0	0	0
................................TCGATGGTGGCTACTAGCGAGTG.....................................................................................................................................................................................................................................	23	18	0.11	2	0	2	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGCGCTT............................................................................................................................................................................................................................................................	24	18	0.11	2	0	2	0	0	0	0	0	0	0	0
............TTTTGTTGTGAAGGGCGCTCTCGATG......................................................................................................................................................................................................................................................	26	18	0.11	2	0	1	0	0	0	0	0	1	0	0
...............................................................................................TTGGTTTGTTGACATCAGTCCCCCTA...................................................................................................................................................................	26	18	0.11	2	0	2	0	0	0	0	0	0	0	0
................GTTGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	21	18	0.11	2	0	2	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGCGC..............................................................................................................................................................................................................................................................	22	18	0.11	2	0	1	1	0	0	0	0	0	0	0
..........................................CTACTAGCGAGTGTAGTGCCGTCTCCA.......................................................................................................................................................................................................................	27	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...........TTTTTGTTGTGAAGGGCGCTC............................................................................................................................................................................................................................................................	21	18	0.11	2	1	0	0	1	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGATC......................................................................................................................................................................................................................................................	25	18	0.11	2	0	2	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGATT......................................................................................................................................................................................................................................................	24	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCTCTCGC........................................................................................................................................................................................................................................................	23	18	0.11	2	0	2	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGT........................................................................................................................................................................................................................................................	22	18	0.11	2	0	2	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCT...........................................................................................................................................................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.............TTTGTTGTGAAGGGCGCT.............................................................................................................................................................................................................................................................	18	19	0.11	2	1	1	0	0	0	0	0	0	0	0
.......................................TGGCTACTAGCGAGTGTAGTGCCGT............................................................................................................................................................................................................................	25	19	0.11	2	0	2	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGG.................................................................................................................................................................................................................................................................	19	19	0.11	2	0	1	0	0	0	0	0	0	1	0
..............TTGTTGTGAAGGGCGCTA............................................................................................................................................................................................................................................................	18	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.......................................................TAGTGCCGTCTCCACTGATTTCCC.............................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TGTAGGCGTGTTGGTTTGTTGAC................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	1	1	0	0
.............................................................................................TGTTGGTTTGTTGACATCAG...........................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
............................................................................................GTGTTGGTTTGTTGACATCAGTC.........................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TGTAGGCGTGTTGGTTTGTTGACA...............................................................................................................................................................................	24	20	0.10	2	0	1	0	0	0	0	0	1	0	0
...............................................................................................TTGGTTTGTTGACATCAGTCCC.......................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................TGTGAAGGGCGCTCTCGAT.......................................................................................................................................................................................................................................................	19	20	0.10	2	0	1	0	0	0	0	0	0	1	0
..............................................TAGCGAGTGTAGTGCCGTCTCCAC......................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	1	1	0
............................................ACTAGCGAGTGTAGTGCCGTCTCCAC......................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................CGTGTTGGTTTGTTGACATCAGTCCC.......................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................GCGAGTGTAGTGCCGTCTCCA.......................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................AGGGCGCTCTCGATGGTGGT.................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................TACTAGCGAGTGTAGTGCCGTC...........................................................................................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	0	0	0	1	0
..................TGTGAAGGGCGCTCTCGATGGTG...................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	0	0	0	0	0	1	0
........................................GGCTACTAGCGAGTGTAGTGC...............................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TGTAGGCGTGTTGGTTTGTTGAA................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................TAGGCGTGTTGGTTTGTTGACATC.............................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................TACTAGCGAGTGTAGTGCCGTCTC.........................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................TAGCGAGTGTAGTGCCGTCTCA........................................................................................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	0	1	0	0	0
.......................................................TAGTGCCGTCTCCACTGATTT................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................TGTAGGCGTGTTGGTTTGTTGACAT..............................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	1	1	0
..............................................TAGCGAGTGTAGTGCCGTCTCCACTGA...................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................GTGTTGGTTTGTTGACATCAGTCCC.......................................................................................................................................................................	25	20	0.10	2	0	1	0	1	0	0	0	0	0	0
.......................................................................................TAGGCGTGTTGGTTTGTTGA.................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................C-TTGGTGTAGGCGTGTTGGTTTGT....................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................................................................CC-TTGGTGTAGGCGTGTTGG.........................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................TC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAACAGC................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAACAGCT...............................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCCTGATGTGTAAATCCAACAGCT...............................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAAATCCAA....................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATTCCTGATGTGTAAATCCAAC...................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCCTGATGTGTAAATCCAACA..................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................GTGTTGGTTTGTTGACATCAGTCCCC......................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................GTGTTGGTTTGTTGACATCAGTCCCCC.....................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAATCCAACAGCTTTTCTAGT--------G..............	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGATGGTG...................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................TGGTGGCTACTAGCGAGTGTAGTGCCG.............................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0
......CATACTTTTTGTTGTGAAGGGCGCTC............................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGATGGTGG..................................................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	0	0	0	0	0	1	0
....AGCATACTTTTTGTTGTGAAGGGCGCT.............................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................TGGTGGCTACTAGCGAGTGTAGTT................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.....GCATACTTTTTGTTGTGAAGGGCG...............................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
....AGCATACTTTTTGTTGTGAAGGGCG...............................................................................................................................................................................................................................................................	25	17	0.06	1	0	0	1	0	0	0	0	0	0	0
..............................TCTCGATGGTGGCTACTAGCGAGTG.....................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................CTCGATGGTGGCTACTAGCGAGTGTA...................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	1	0	0	0
.........ACTTTTTGTTGTGAAGGGCGCTCTCG.........................................................................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TGTTGACATCAGTCCCCCTACCTC------------------------------------------------------------------------------------------------------.........................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.........ACTTTTTGTTGTGAAGGGCGCTCTCGA........................................................................................................................................................................................................................................................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TTGGTGTAGGCGTGTTGG.........................................................................................................................................................................................	18	17	0.06	1	0	0	0	0	1	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGATGGA....................................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0	0	0	0	0	0
CCAAAGCATACTTTTTGTTGTGAAGG..................................................................................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................TGGTGTAGGCGTGTTGGTTTGTTGACA...............................................................................................................................................................................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0
....AGCATACTTTTTGTTGTGAAGGC.................................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGAAC......................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................GTTGTGAAGGGCGCTCTCGATGA.....................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................GGTGTAGGCGTGTTGGTTTGTTG..................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................GTTGTGAAGGGCGCTCTCGT........................................................................................................................................................................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........TTTTTGTTGTGAAGGGCGCTA............................................................................................................................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0
........TACTTTTTGTTGTGAAGGGCGCTCTCA.........................................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................TCGATGGTGGCTACTAGCGAGTGT....................................................................................................................................................................................................................................	24	18	0.06	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................TGTAGGCGTGTTGGTTTGTTGACATCAG...........................................................................................................................................................................	28	18	0.06	1	0	0	0	0	0	0	1	0	0	0
...........TTTTTGTTGTGAAGGGCGCTCTCGAA.......................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	0	0	0	0	0	1	0	0
..................................................................................TGGTGTAGGCGTGTTGGTTTGTT...................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGATGA.....................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...............TGTTGTGAAGGGCGCTCTCGATT......................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGATAA.....................................................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGAAA......................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........TTTTTGTTGTGAAGGGCGCTCT...........................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.....GCATACTTTTTGTTGTGAAGG..................................................................................................................................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................GTTGTGAAGGGCGCTCTCG.........................................................................................................................................................................................................................................................	19	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................TGGTGTAGGCGTGTTGGTTTGT....................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................TTGGTTTGTTGACATCAGTCCCCCTAC..................................................................................................................................................................	27	18	0.06	1	0	0	0	0	0	0	0	0	1	0
................................TCGATGGTGGCTACTAGCGAGTGTA...................................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............TTGTTGTGAAGGGCGCTCTCGATC......................................................................................................................................................................................................................................................	24	18	0.06	1	0	0	0	0	0	0	0	0	1	0
.............TTTGTTGTGAAGGGCGCTCTCGATTC.....................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................TGGTGGCTACTAGCGAGTGTAGTGCAA.............................................................................................................................................................................................................................	27	18	0.06	1	0	0	0	0	1	0	0	0	0	0
.................................CGATGGTGGCTACTAGCGAGTGTA...................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0

droWil2

AATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATAGGTATAAGAAACCGACTGCACTCCCAGCCAAGAAATATATTGAACTTTTGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTACAAGAAACCCACTGCGCTTCCTGCACAGAAATATATTGAGCTTCTCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................CACAGAAATATATTGAGCTTC...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTACAAGAAACCCACT..................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAT---------TTGCAA---------TATTAAATTGTAGATACAAAAAACCCACTGCTCTGCCTGCACAAAAATATATTGAGTTGCTAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCAGATATAAGAAACCCACTGCGCTGCCTGCACAGAAATATATTGAGCTGCTCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

AGCAGATATTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTTAA---CACAT---------ATTC------------ATCTTTTTTTAGATATAAAAAACCAACAGCTCTCTCAGCTCAAAAATATATAGAGCATCTAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGATATAAAAAACCAACAGCTCTTTCAGCTCAGAAATATATAGAGCATTTAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAGTGCATACTCCTTATTGTTTAGGGCTCTCTCAATGGTGGCTACCAACGAATGTAGTGCCGTCTCCACTGATTTCCCC-TTCGTGTAGGCATGCTGGTTGGTCGACAGTTGTCTCCCTACATC------------------------------------------------------------------------------------------------------GTTCCTGATGTATAGCTCCAGCAGCTTTTCCAGA--------GTTTTAAGTAGAAAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AATTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTAGCTATAAAAAGCCAACCGCACTCTCAGCTCAGAAGTATATTGAGCATTTAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTAGGGCATATTCCTTG-TGCAAAGTGCCTTCTCGATGGTAGCTACTAGCGAGTGTAGTGCCGTCTCCACCGATTCTCCT-TTGGTGTTTGCGTGCTGGTTGGTTGACATTAGTATCTCCACATCGATCCTGATCAGTGCTGCATTCGGATTTTAGTTGCTATTTATGGCAACTTTCCAAAAAA----TGTTGAGACTTTTAT------------------------------------------------TTTTTTAATT--------GCTGTTAGCCA-CAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTCAGATACAAAAAGCCAACAGCCCTCTCCGCCCAGAAATATATTGAACATTTAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TT----------------------------------------------------------------CCTTAGATTTCTCT-TTGGTGTAGGGGTGCTGGTTGGAATACAGGTGTCTCCCTACATC------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAGATCTAGCAGCTTTTCTA--------ATGTTTTGAGTATGAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAGCGCATATTCTTTAATGTGTAGGGCTCTCTCAACGGTTGCTACTAGCGAGTGTAGTGCCGTTTCCACAGATTTTCCC-TTGGTGTAGGCGTGCTGGTTGGATGACATGAGCCTCCCTACATT------------------------------------------------------------------------------------------------------ATTCCTGATGTGTAGATCCAGCAGCTTTTCCAGT--------GTCTTGAGTAT-AAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAAATAAAGTTTATAAATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------TCCCAATTAAGTATATATATAATTTTAGATACAAAAAGCCAACCGCCCTCTCAGCACAGAAATATATTGAGCACCTAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCAGATACAAAAAGCCAACCGCCCTTTCAGCCCAAAAGTACATTGAGCATTTAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................CGCCCTTTCAGCCCAAAAGTACATT..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCAGATACAAAAAGCCAACCGCCCTCTCAGCCCAAAAGTACATTGAGCATTTAA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCAGATACAAAAAGCCAACCGCCCTCTCAGCCCAAAAGTACATTGAGCATTTAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................TCAGCCCAAAAGTACATTGAGC......	22	1	1.00	1	0	0	0	1

droYak3

CGAGAGCATATTTTTGGTTATGCAGGGCTTTCTCAATGGTGACTACTAATGAGTGTAGTGCCGTCTCCACTGATTTACCT-TTCGTGTAAGCATGCTGGTTGGATGACAGTAGTCGTCCTGCATC------------------------------------------------------------------------------------------------------ATTTCTGATGTGTACGTCCAGCAGCTTTTCTAGC--------GTCTTTAGT------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............TTGGTTATGCAGGGCTTTCTCAATGG.....................................................................................................................................................................................................................................................	26	20	2.35	47	0	41	0	0	0	0	6	0	0	0	0
.............TTGGTTATGCAGGGCTTTCTCAATG......................................................................................................................................................................................................................................................	25	20	1.35	27	0	25	1	1	0	0	0	0	0	0	0
.......................................................................................................................TGCATC------------------------------------------------------------------------------------------------------ATTTCTGATGTGTACGTCCAG....................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............TTGGTTATGCAGGGCTTTCTCAATGGT....................................................................................................................................................................................................................................................	27	20	0.35	7	0	4	0	0	0	0	1	0	0	0	2
...........................................TACTAATGAGTGTAGTGCCGTCTCCA.......................................................................................................................................................................................................................	26	9	0.33	3	0	3	0	0	0	0	0	0	0	0	0
...........................................TACTAATGAGTGTAGTGCCGTCTCCAC......................................................................................................................................................................................................................	27	9	0.33	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................TGATTTACCT-TTCGTGTAAGCATGC............................................................................................................................................................................................	25	9	0.33	3	0	3	0	0	0	0	0	0	0	0	0
..............................................TAATGAGTGTAGTGCCGTCTCCACT.....................................................................................................................................................................................................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0	0
...........................................TACTAATGAGTGTAGTGCCGTCTCC........................................................................................................................................................................................................................	25	9	0.22	2	0	1	1	0	0	0	0	0	0	0	0
......................................................................TGATTTACCT-TTCGTGTAAGCATGCTG..........................................................................................................................................................................................	27	9	0.22	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TACGTCCAGCAGCTTTTCTAGC--------GTCT...........	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.............TTGGTTATGCAGGGCTTTCTCAAT.......................................................................................................................................................................................................................................................	24	20	0.20	4	0	3	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................ACGTCCAGCAGCTTTTCTAGC--------GTCTT..........	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TCGTGTAAGCATGCTGGTTGGATGACA...............................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................TACCT-TTCGTGTAAGCATGCTGGTTG......................................................................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
............TTTGGTTATGCAGGGCTTTCTCAATGG.....................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
........TATTTTTGGTTATGCAGGGCTTTCTCAA........................................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................TAAGCATGCTGGTTGGATGACAGTAG...........................................................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...............................................AATGAGTGTAGTGCCGTCTCCACT.....................................................................................................................................................................................................................	24	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0
............................................ACTAATGAGTGTAGTGCCGTCTCCA.......................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TACTAATGAGTGTAGTGCCGTCTCCACAA....................................................................................................................................................................................................................	29	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...............................................AATGAGTGTAGTGCCGTCTCCAC......................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..............TGGTTATGCAGGGCTTTCTCAATG......................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................TACTAATGAGTGTAGTGCCGTCTC.........................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................TGCCGTCTCCACTGATTTACCT-TT.........................................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TGTAGTGCCGTCTCCACTGATTTACC.............................................................................................................................................................................................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
...............................................AATGAGTGTAGTGCCGTCA..........................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................TCCACTGATTTACCT-TTCGTGTAAGCA...............................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................TGATTTACCT-TTCGTGTAAGC................................................................................................................................................................................................	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.............TTGGTTATGCAGGGCTTTCTCA.........................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.............TTGGTTATGCAGGGCTTTCTCAATGT.....................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............TGGTTATGCAGGGCTTTCTCAATGG.....................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTCAGATACAAGAAGCCTACCGCCCTTTCAGCGCAGAAATACATTGAGCATTTAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_509

scaffold_1:1035259-1035409 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads