dpe_501

CDS [Dper\GL19111-cds]; exon [dper_GLEANR_21253:2]; exon [dper_GLEANR_21253:1]; CDS [Dper\GL19111-cds]; intron [Dper\GL19111-in]

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------################################################## ATGTCCACCAGAAATGGGTTTGATGCGGAAACATATATCGTTGGGGATCTGTAAGTGAATCAAAGATCCTGTTTAGACACTTCCTTGGATAAATATCTCAATATCTGGCTAGGCCTCTGGCTTGTGGCAGGAATCAAGCGAATCTCTGGCCTTCCAACACAAAAATCTGACCATCAATGTAGCGCCTATCCAGAGCCAGATCTTCTACAGGTACAGCCTGGACCCGGTGGCC ************************************************..................((..(((((.......(((((.................(((((((......(((((..........))))).....))))))).)))))........)))))..........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V042 embryo	V111 male body	M042 female body
........CAGAAATGGGTTTGATGCGGAAA.........................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0
.................................................................................TCTTTGGATAAATATATCAATA.................................................................................................................................	22	2	1	1.00	1	1	0	0
..................................................................................................................................................................................................................CTATAGCCTGGCCCCGGTGGC.	21	3	2	0.50	1	1	0	0
............AATGGGTTTGATGCGGGATCC.......................................................................................................................................................................................................	21	3	7	0.14	1	0	0	1

##################################################------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGTCCACCAGAAATGGGTTTGATGCGGAAACATATATCGTTGGGGATCTGTAAGTGAATCAAAGATCCTGTTTAGACACTTCCTTGGATAAATATCTCAATATCTGGCTAGGCCTCTGGCTTGTGGCAGGAATCAAGCGAATCTCTGGCCTTCCAACACAAAAATCTGACCATCAATGTAGCGCCTATCCAGAGCCAGATCTTCTACAGGTACAGCCTGGACCCGGTGGCC
**************************************************..................((..(((((.......(((((.................(((((((......(((((..........))))).....))))))).)))))........)))))..........))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V042
embryo

V111
male body

M042
female body

........CAGAAATGGGTTTGATGCGGAAA.........................................................................................................................................................................................................

1.00

.................................................................................TCTTTGGATAAATATATCAATA.................................................................................................................................

1.00

..................................................................................................................................................................................................................CTATAGCCTGGCCCCGGTGGC.

0.50

............AATGGGTTTGATGCGGGATCC.......................................................................................................................................................................................................

0.14

Anti-sense strand reads

TACAGGTGGTCTTTACCCAAACTACGCCTTTGTATATAGCAACCCCTAGACATTCACTTAGTTTCTAGGACAAATCTGTGAAGGAACCTATTTATAGAGTTATAGACCGATCCGGAGACCGAACACCGTCCTTAGTTCGCTTAGAGACCGGAAGGTTGTGTTTTTAGACTGGTAGTTACATCGCGGATAGGTCTCGGTCTAGAAGATGTCCATGTCGGACCTGGGCCACCGG ************************************************..................((..(((((.......(((((.................(((((((......(((((..........))))).....))))))).)))))........)))))..........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	V042 embryo
......................................................................................................................................GTTCGTTTAGAGATCAGAAGGT............................................................................	22	3	2	0.50	1	1	0
..........................................................................................................................................................................................ACAGGTCTCGGTCAAGAA............................	18	2	12	0.08	1	0	1

TACAGGTGGTCTTTACCCAAACTACGCCTTTGTATATAGCAACCCCTAGACATTCACTTAGTTTCTAGGACAAATCTGTGAAGGAACCTATTTATAGAGTTATAGACCGATCCGGAGACCGAACACCGTCCTTAGTTCGCTTAGAGACCGGAAGGTTGTGTTTTTAGACTGGTAGTTACATCGCGGATAGGTCTCGGTCTAGAAGATGTCCATGTCGGACCTGGGCCACCGG
**************************************************..................((..(((((.......(((((.................(((((((......(((((..........))))).....))))))).)))))........)))))..........))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V057
head

V042
embryo

......................................................................................................................................GTTCGTTTAGAGATCAGAAGGT............................................................................

0.50

0.08

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droPer2	scaffold_1:431547-431778 +	dpe_501	ATGTCCACCAGAAATGGGTTTGATGCGGAAACATATATCGTTGGGGATCTGTAAGTGAATCAAAGATCCTGTTTAGACACTTCCTTGGATAAATATCTCAATATCTGGCTAGGCCTCTGGCTTGTGGCAGGAATCAAGCGAATCTCTGGCCTTCCAACACAAAAATCTGACCATCAATGTAGCGCCTATCCAGAGCCAGATCTTCTACAGGTACAGCCTGGACCCGGTGGCC
dp5	4_group1:436676-436907 +		ATGTCCACCAGAAATGGGTTCGATGCGGAAACATATATCGTTGGGGATCTGTAAGTGAATCAAAGATCCTGTTTGGACACTTCCTTGGATAAATATCTTAATCTCTGGCTAGGCCTCTGGCTTGTGGCAGGGATCCAGCGAATCTCTGGCCTTCCAACTCAAAAATCTGACCATCAATGTAGCGCCTATCCAGAGCCAGATCTTCTACAGGTACAGCCTGGACCCGGTGGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ATGTCCACCAGAAATGGGTTTGATGCGGAAACATATATCGTTGGGGATCTGTAAGTGAATCAAAGATCCTGTTTAGACACTTCCTTGGATAAATATCTCAATATCTGGCTAGGCCTCTGGCTTGTGGCAGGAATCAAGCGAATCTCTGGCCTTCCAACACAAAAATCTGACCATCAATGTAGCGCCTATCCAGAGCCAGATCTTCTACAGGTACAGCCTGGACCCGGTGGCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........CAGAAATGGGTTTGATGCGGAAA.........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

dp5

ATGTCCACCAGAAATGGGTTCGATGCGGAAACATATATCGTTGGGGATCTGTAAGTGAATCAAAGATCCTGTTTGGACACTTCCTTGGATAAATATCTTAATCTCTGGCTAGGCCTCTGGCTTGTGGCAGGGATCCAGCGAATCTCTGGCCTTCCAACTCAAAAATCTGACCATCAATGTAGCGCCTATCCAGAGCCAGATCTTCTACAGGTACAGCCTGGACCCGGTGGCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................ATATATCGTTGGGGATCTGC....................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0

dpe_501

scaffold_1:431597-431728 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads