ID:

dpe_50

 Coordinate:

scaffold_143:54114-54183 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy11-I_Dpse-intLTRGypsy+
mature
star
  1. scaffold_143:42287-42312 +
  2. dpe_50  scaffold_143:54140-54165 +
  3. scaffold_4562:786-811 -

Sense Strand Reads

NNNNNNNNNNNNNNNNNNNNNNNNGTCTCAACGTCTCAGCGACTTACAAATAAACTGTAGGTGACCTTGGGCAGACTGATACTGTCCCCGGCCTAAGATCACTACTTTACAGATGGCGCCCGAGCAGGGACTGTTGAGACAATTCAAACGATAGTTTTCTGGGGGGATTT
***********************************...................((((((((((.(((((((.(((.......)))....))))))).)))))....))))).....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V111
male body		 V050
head
 V042
embryo
 V057
head
..................................................TAAACTGTAGGTGACCTTGGGC.................................................................................................. 22 0 1 43.00 43 25 13 5 0 0 0
..................................................TAAACTGTAGGTGACCTTGGGCAG................................................................................................ 24 0 1 5.00 5 2 2 1 0 0 0
..................................................TAAACTGTAGGTGACCTTGGG................................................................................................... 21 0 1 4.00 4 0 3 1 0 0 0
...................................................AAACTGTAGGTGACCTTGGGC.................................................................................................. 21 0 1 3.00 3 0 2 0 1 0 0
..................................................TAAACTGTAGGTGACCTTGGGCAGA............................................................................................... 25 0 1 2.00 2 0 1 1 0 0 0
...................................................AAACTGTAGGTGACCTTGGG................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0
..................................................TAAACTGTAGGTGACCTGGGC................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0
...................................................AAACTGTAGGTGACCTTGGGCAG................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
..................................................TAAACTGTAGGGGACCTTGGGCAG................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAACTGTTGGTGACCTTGGGCAG................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAACTGTAGGTGACCTTGGGCCG................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
....................................................AACTGTAGGTGACCTTGGGCA................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
...................................................AAACTGTAGGTGACCTTGGGCAGAC.............................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
..................................................TAAACTGTAGGTGACCTTGGGG.................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
................................................AATGAACTGTAGGTGACCTT...................................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
..................................................TAAACTGTAGGTGACCATGGGC.................................................................................................. 22 1 20 0.40 8 0 0 8 0 0 0
............................................................................TGATACTGTCCCCGGCCTAAGATCAC.................................................................... 26 0 3 0.33 1 0 1 0 0 0 0
.......................................................................................................................................................TTGTTTTCTGGGGGGATT. 18 1 6 0.17 1 0 0 0 0 1 0
...........................................................................................................TACAGATGGCGCCCGAGCAGGGACT...................................... 25 0 20 0.15 3 0 2 0 0 1 0
................................................................................................................................................CAAACGATAGTTTTCTGGGG...... 20 0 14 0.14 2 0 2 0 0 0 0
.......................................................................................................................................................TTGTTTTCTGGGGGGAGT. 18 2 20 0.10 2 0 2 0 0 0 0
.......................................................................................................................................GAGACAATTCAAACGAAA................. 18 1 13 0.08 1 0 1 0 0 0 0
...............................................................................................................................................TCAAACGATAGTTTTCTGGGGGG.... 23 0 13 0.08 1 0 1 0 0 0 0
.......................................................................................................................................GAGACAATTCAAACGATAGTTTTCTG......... 26 0 13 0.08 1 0 1 0 0 0 0
.....................................................................................................................................TTGAGACAATTCAAACGATAGTTT............. 24 0 13 0.08 1 0 1 0 0 0 0
...............................................................................................................................................TCAAACGATAGTTTTCTGGGG...... 21 0 14 0.07 1 0 1 0 0 0 0
..............................................................................................................................................TTCAAACGATAGTTTTCTGGGGG..... 23 0 14 0.07 1 0 1 0 0 0 0
.............................................................................................................................................ATTCAAACGATAGTTTTCTGGGGG..... 24 0 14 0.07 1 0 1 0 0 0 0
.................................................................................................................................................AAACGATAGTTTTCTGGGGG..... 20 0 14 0.07 1 0 1 0 0 0 0
.......................................................................................................................................................TTGTGTTCTGGGGGGATT. 18 2 14 0.07 1 0 0 0 0 0 1
..................................................TAAACTGTAGGTGACCATGG.................................................................................................... 20 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................TTACAGATGGCGCCCGAGCAGGGACT...................................... 26 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

NNNNNNNNNNNNNNNNNNNNNNNNCAGAGTTGCAGAGTCGCTGAATGTTTATTTGACATCCACTGGAACCCGTCTGACTATGACAGGGGCCGGATTCTAGTGATGAAATGTCTACCGCGGGCTCGTCCCTGACAACTCTGTTAAGTTTGCTATCAAAAGACCCCCCTAAA
*****************************************************...................((((((((((.(((((((.(((.......)))....))))))).)))))....))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V050
head
 M021
embryo
 V057
head
 V111
male body
....................................GTCGCTGAATGTTTATTTGACATC.............................................................................................................. 24 0 9 0.67 6 6 0 0 0 0
........................................................................................................................GCTCGTCCCTGACAACTCTGTTAAG......................... 25 0 10 0.50 5 5 0 0 0 0
.....................................TCGCTGAATGTTTATTTGACATC.............................................................................................................. 23 0 9 0.33 3 0 0 2 0 1
....................................................................................AGGGGCCGGATTCTAGTGATGAAAT............................................................. 25 0 3 0.33 1 1 0 0 0 0
.......................................................................................GGCCGGATTCTAGTGATGAAATGTCT......................................................... 26 0 3 0.33 1 1 0 0 0 0
...................................................................................CAGGGGCCGGATTCTAGTGAT.................................................................. 21 0 3 0.33 1 1 0 0 0 0
.................................................................................................................ACCGCGGGCTCGTCCCTGAC..................................... 20 0 10 0.30 3 0 3 0 0 0
..................................GAGTCGCTGAATGTTTATTTGACAT............................................................................................................... 25 0 9 0.22 2 2 0 0 0 0
......................................CGCTGAATGTTTATTTGACATC.............................................................................................................. 22 0 9 0.22 2 2 0 0 0 0
..............................................................................................................................CCCTGACAACTCTGTTAAGTTTGCTAT................. 27 0 10 0.20 2 2 0 0 0 0
........................................................................................................................GCTCGTCCCTGACAACTCTGTTAAGT........................ 26 0 10 0.20 2 2 0 0 0 0
..........................................................................................................AATGTCTACCGCGGGCTCGTCCCT........................................ 24 0 20 0.20 4 4 0 0 0 0
.............................................................................................................................................TAAGTTTGCTATCAAAAGACCCCCCT... 26 0 5 0.20 1 1 0 0 0 0
.......................................................................................................................GGCTCGTCCCTGACAACTCTGTTAAG......................... 26 0 10 0.20 2 2 0 0 0 0
...................................TGTCGCTGAATGTTTATTTGACATC.............................................................................................................. 25 1 9 0.11 1 1 0 0 0 0
..................................GAGTCGCTGAATGTTTCTTTGACAT............................................................................................................... 25 1 9 0.11 1 1 0 0 0 0
.................................AGAGTCGCTGAATGTTTATTTGACAT............................................................................................................... 26 0 9 0.11 1 1 0 0 0 0
...................................AGTCGCTGAATGTTTATTTGACATC.............................................................................................................. 25 0 9 0.11 1 1 0 0 0 0
........................CAGAGTTGCAGAGTCGCTGA.............................................................................................................................. 20 0 9 0.11 1 0 1 0 0 0
..................................GAGTCGCTGAATGTTTATTTGACATC.............................................................................................................. 26 0 9 0.11 1 1 0 0 0 0
....................................GTCGCTGAATGTTTATTTGACAT............................................................................................................... 23 0 9 0.11 1 1 0 0 0 0
....................................GTCGCTGAATGTTTAATTGACATC.............................................................................................................. 24 1 9 0.11 1 1 0 0 0 0
......................................CGCTGAATGTTTATTTGACAT............................................................................................................... 21 0 9 0.11 1 0 1 0 0 0
.........................................................................................................................CTCGTGCCAGACAACTCT............................... 18 2 10 0.10 1 0 0 1 0 0
.................................................................................................................ACCGCGGGCTCGTCCCTGA...................................... 19 0 20 0.10 2 0 2 0 0 0
..........................................................................................................................TCGTCCCTGACAACGCTGTTAAG......................... 23 1 10 0.10 1 1 0 0 0 0
.................................................................................................................ACCGCTGGCTCGTCCCGGAC..................................... 20 2 10 0.10 1 0 0 0 1 0
.................................................................................................................ACCGCGGGCTCGTCCCTGACT.................................... 21 1 20 0.10 2 0 2 0 0 0
...........................................................................................................................CGTCCCTGACAACTCTGTTA........................... 20 0 10 0.10 1 1 0 0 0 0
.................................................................................................................ACCGCGGGCTCGTCCCTCACCA................................... 22 2 20 0.10 2 0 0 2 0 0
...............................................................................................................................CCTGACAACTCTGTTAAGTTTGCTAT................. 26 0 10 0.10 1 1 0 0 0 0
.................................................................................................................ACCGCGGGCTCGTCCCGGAC..................................... 20 1 10 0.10 1 0 0 0 1 0
.........................................................................................................................CTCGTCCCTGACAACTATGTTAAGG........................ 25 2 11 0.09 1 1 0 0 0 0
................................................................................CGACAGTGGCCGGATTCGAG...................................................................... 20 3 11 0.09 1 0 0 0 1 0
.........................................................................................................................CTCGTCCCTGTCAACTCTGTTAAG......................... 24 1 12 0.08 1 1 0 0 0 0
.........................................................................................................................CTCGTCCCTGTCAACTCTGTTAAGT........................ 25 1 12 0.08 1 1 0 0 0 0
.................................................................................................................ACCGCGGGCTCGTCCCTGTCAACTCTGT............................. 28 1 12 0.08 1 1 0 0 0 0
.......................................................................................................................GGCTCGTCCCTGTCAACTCTGTTAAG......................... 26 1 12 0.08 1 1 0 0 0 0
........................................................................................................GAAATGTCTACCGCGGGCTCGTCC.......................................... 24 0 15 0.07 1 0 0 1 0 0
........................................................................................................GAAATGTCTACCGCGGGCCCGTCC.......................................... 24 1 15 0.07 1 0 0 1 0 0
........................................................................................................AAAATGTCTACCGCGGGCTCGTCCC......................................... 25 1 16 0.06 1 0 0 1 0 0
................................................................................................................TACCGCGGGCTCGTCCCTGA...................................... 20 0 20 0.05 1 0 0 0 1 0
................................................................................................................TACCGCGGGCTCGTCCCTG....................................... 19 0 20 0.05 1 1 0 0 0 0
.................................................................................................................ACCGCGGGCTCGTCCTGGACT.................................... 21 3 20 0.05 1 0 0 0 0 1
................................................................................................................TTCCGCGGGCTGGTCCCTGA...................................... 20 2 20 0.05 1 1 0 0 0 0
.................................................................................................................ACCGCGCGCTCGTCCCTGA...................................... 19 1 20 0.05 1 1 0 0 0 0
...............................................................................................................ATTCCGCGGGCTCGTCCCT........................................ 19 2 20 0.05 1 1 0 0 0 0
.................................................................................................................ACCGCGGGCTCGTCCCCGACT.................................... 21 2 20 0.05 1 1 0 0 0 0
.................................................................................................................ACCGCGAGCTCGTCCCTGA...................................... 19 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_143:54064-54233 + dpe_50 NNNNNNNNNNNNNNNNNNNNNNNNGTCTCAAC-GTCTCAGCGACTTACAAATAAA-CTGTAGGT-G-ACCTTG-G--GCAGACTGATAC--T-GTCCCCGGCCT--AAGAT-CACTACTTTACAGATGGCGCCCGAGCAGGGACTG-TTGAGACAATTCAAACGATAGTT---TTCTGG-G-GGGATTT
dp5 Unknown_group_92:8809-8953 - ------------------------GTCTCAAC-GTCTCAGCGACTTACAAATAAA-CTGTAGGT-G-ACCCTG-G--GCAGACTGATAC--T-GTCCCCGGCCT--AGGAT-CACTACTTTACAGATGGCGCCCGAGCAGGGACTG-TTGAGACAATTCAAACGATAGTT---TTCTGG---GGGATTT
droWil2 scf2_1100000002513:1441-1541 - ------------------------T---CGGG-GTCTCAAGATCAAATAAATGTT-CTGTAGACTGGACTCTG-G-----GACTGAGAATTG-TACCCCAGCCA---G----AGCTTCCTTACAGATGGCGCCCGAGCAGGGAC---------------------------------------------
droMoj3 scaffold_3494:4950-5089 - ------------------------GT---------CTCGGCAATTTACAAATATCCTTGTAAAT-G-AACCTGGG--GGAGACTGAGACTTG-TACCCCGGCCGTTGAAAT-CACTTCTTTACAAGTGGCGCCCGAGCAGGGACCT---GAGATTAATGA--GGATGGTTTCTTTC--T---GGGACTA
droKik1 scf7180000299253:1193-1317 - ------------------------CT--CAACTGTCTCAAAGATAAATAAATTTATCTGATGA---------G-G--GCGGACTGAGAC--GCGACCCCAGCA-----AAA-CGCATCCTTACAGATGGCGCCCGAGCAGGGACTAGTTGAGG-----------AAATT-------TAGGGGAAAATTC
droFic1 scf7180000453173:6463-6590 - ------------------------C----GGC-GTTTCGGTGAATTACAAATATTCTTGTAAAG-G-ACTCTG-GTACTCGACTGAGATCTG-TACCCCGGCCA---AGAA-AACATCCTTACAAGTGGCGCCCGAACAGGGACA--CCGAGACTAG-----------C-------T-T---GGGATTT
droEle1 scf7180000491177:18947-19045 + ------------------------GG-------------------------------------C-G-ACTTTG-T--CCGGACTGAGAC--A-TACCCCAGCCA---AGAA-AACTACTTTACAGATGGCGCCCGATCAGGGACTT-AC--GG--AATCA--AGATTAC-------TAA---AGAGTTG
droRho1 scf7180000779442:26485-26600 - ------------------------C-------------------TTATAAATTTT-CTGTAAGC-G-ACCCTG-G--CCAGACTGAGAC--A-TATCCCAGCCA---GCAT-AACTACTTTACAGATGGCGCCCGAGCAGGGACTT-A--GGG--AATCA--GGATAAT-------TAG---AGAATTC
droTak1 scf7180000414918:10088-10220 - ------------------------TTC-CAAA-GTCCC--CAACTTATAAATTTTTCTGTAAGC-G-ACCCTG-G--CCGGACTGAGCC--A-TATCCCAGCCA---GGA--AACTACGTTACAGATGGCGCCCGAGCAGGGACTA-ACAGGG--AATCA--GGATAAT-------TAG---AGGATTA
droEug1 scf7180000409171:46768-46884 + ------------------------GT---------CTTAGT-ACTTACAAATATTTCTGTAGAA-G-ACCCTG-G--GCTGACTGAAGCTTA-TATCCCGGCCC--GTGATTAGCATCCTTACAGATGGCGCCCGAGCAGGGACTA----------GGCA--GGATA------------------ATTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
NNNNNNNNNNNNNNNNNNNNNNNNGTCTCAAC-GTCTCAGCGACTTACAAATAAA-CTGTAGGT-G-ACCTTG-G--GCAGACTGATAC--T-GTCCCCGGCCT--AAGAT-CACTACTTTACAGATGGCGCCCGAGCAGGGACTG-TTGAGACAATTCAAACGATAGTT---TTCTGG-G-GGGATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................TAAA-CTGTAGGT-G-ACCTTG-G--GC..............................................................................................................22143.004325130005
...................................................TAAA-CTGTAGGT-G-ACCTTG-G--GCAG............................................................................................................2415.005220001
...................................................TAAA-CTGTAGGT-G-ACCTTG-G--G...............................................................................................................2114.004030001
....................................................AAA-CTGTAGGT-G-ACCTTG-G--GC..............................................................................................................2113.003020100
...................................................TAAA-CTGTAGGT-G-ACCTTG-G--GCAGA...........................................................................................................2512.002010001
....................................................AAA-CTGTAGGT-G-ACCTTG-G--G...............................................................................................................2012.002020000
....................................................AAA-CTGTAGGT-G-ACCTTG-G--GCAG............................................................................................................2311.001010000
.....................................................AA-CTGTAGGT-G-ACCTTG-G--GCA.............................................................................................................2111.001000001
....................................................AAA-CTGTAGGT-G-ACCTTG-G--GCAGAC..........................................................................................................2511.001010000
...................................................TAAA-CTGTAGGT-G-ACCTTG-G--GG..............................................................................................................2220.501010000
...................................................................................TGATAC--T-GTCCCCGGCCT--AAGAT-CAC..........................................................................2630.331010000
........................................................................................................................TACAGATGGCGCCCGAGCAGGGACT............................................25200.153021000
..............................................................................................................................................................CAAACGATAGTT---TTCTGG-G-G......20140.142020000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG-G-GGG....23130.081010000
.....................................................................................................................................................GAGACAATTCAAACGATAGTT---TTCTG...........26130.081010000
...................................................................................................................................................TTGAGACAATTCAAACGATAGTT---T...............24130.081010000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG-G-G......21140.071010000
............................................................................................................................................................TTCAAACGATAGTT---TTCTGG-G-GG.....23140.071010000
...........................................................................................................................................................ATTCAAACGATAGTT---TTCTGG-G-GG.....24140.071010000
...............................................................................................................................................................AAACGATAGTT---TTCTGG-G-GG.....20140.071010000
.......................................................................................................................TTACAGATGGCGCCCGAGCAGGGACT............................................26200.051010000
dp5
------------------------GTCTCAAC-GTCTCAGCGACTTACAAATAAA-CTGTAGGT-G-ACCCTG-G--GCAGACTGATAC--T-GTCCCCGGCCT--AGGAT-CACTACTTTACAGATGGCGCCCGAGCAGGGACTG-TTGAGACAATTCAAACGATAGTT---TTCTGG---GGGATTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGG....22206.35127095703012010
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGGA...2314.0040300000100
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---G......20203.557106600100400
........................................CGACTTACAAATAAA-CTGTAGGT-G-ACCC......................................................................................................................2813.0030120000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GG.....21202.905800800004820
...................................................................................TGATAC--T-GTCCCCGGCCT--AGGAT-CAC..........................................................................2612.0020200000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGGATT.2512.0020200000000
........................................................................................................................TACAGATGGCGCCCGAGCAGGGACTG-..........................................26181.061901700002000
...................................................................................................................TACTTTACAGATGGCGCCCGAGC...................................................23201.002002000000000
...................................................................................TGATAC--T-GTCCCCGGCCT--AGGAT-CAA..........................................................................2611.0010100000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGGAT..2411.0010100000000
..............................................................................................TCCCCGGCCT--AGGAT-CACTACTTTA...................................................................2511.0010100000000
.........................................GACTTACAAATAAA-CTGTAGGT-G-ACCC......................................................................................................................2711.0010100000000
........................................CGACTTACAAATAAA-CTGTAGGT-G-ACC.......................................................................................................................2711.0010010000000
...................................................TAAA-CTGTAGGT-G-ACCCTG-G--GCAC............................................................................................................24201.002001910000000
...................................................................................TGATAC--T-GTCCCCGGCCT--AGGAT-.............................................................................2311.0010100000000
...................................................................................TGATAC--T-GTCCCCGGCCT--AGGT...............................................................................2211.0010100000000
...................................................................................TGATAC--T-GTCCCCGGCCT--AGG................................................................................2111.0010100000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---.......19200.801601600000000
..............................................................................................................................................................CAAACGATAGTT---TTCTGG---GG.....20200.701401400000000
................................................................................................................CACTACTTTACAGATGGCGC.........................................................20190.631201010000010
.......................................................................................................T--AGGAT-CACTACTTTACAGATGGCGC.........................................................26180.56100501000130
..............................................................................................................................................................CAAACGATAGTT---TTCTGG---G......19200.551101100000000
................................................................................................................CACTACTTTACAGATGGCGCC........................................................21190.53100910000000
.......................................................................................................T--AGGAT-CACTACTTTACAGATGGCGCC........................................................27180.5090400000500
...................................................................................................................TACTTTACAGATGGCGCCCGAGCAGG................................................26190.4280700100000
..........................................................................................................................................AGGGACTG-TTGAGACAAT................................18180.3970300000400
...................................................TAAA-CTGTAGGT-G-ACCCTG-G--AA..............................................................................................................22200.3570700000000
.....................................................................................................................................................GAGACAATTCAAACGATAGTT---TTCTGG---.......27200.3570700000000
........................................................................................................................TACAGATGGCGCCCGAGCAGG................................................21200.3570700000000
.......................................................................................................T--AGGAT-CACTACTTTACAGATGGCG..........................................................25180.3360500000010
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGA....22200.3060500000100
...................................................................................................................TACTTTACAGATGGCGCCCGAGCAG.................................................25200.3060400000200
......................................................................................................................................................AGACAATTCAAACGATAGTT---TTCTGG---.......26200.3060400000200
.......................................................................................................T--AGGAT-CACTACTTTACAGATGGCGCCC.......................................................28180.2850410000000
........................................................................................................................................................ACAATTCAAACGATAGTT---TTCTG...........23200.2550000000500
....................................................................................................................ACTTTACAGATGGCGCCCGAGC...................................................22200.2550400100000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GA.....21200.2550010100300
........................................................................................................................TACAGATGGCGCCCGAGCAGGGAC.............................................24200.2550000000500
.....................................................................................................................................................GAGACAATTCAAACGATAGTT---TTCTGG---G......28200.2550500000000
.....................................................................................................................................................GAGACAATTCAAACGATAGTT---TTC.............24200.2550500000000
........................................................................................................................TACAGATGGCGCCCGAGCAGGGACTG-T.........................................27180.2240400000000
................................................................................................................CACTACTTTACAGATGGCGCCC.......................................................22190.2140310000000
..................................................................................................................CTACTTTACAGATGGCGCCCG......................................................21200.2040400000000
...........................................................................................................................................GGGACTG-TTGAGACAAT................................17180.1730000000300
......................................................................................................................................GAGCAGGGACTG-TTGAGACAA.................................21180.1730000000300
..............................................................................................................T-CACTACTTTACAGATGGCG..........................................................20190.1630300000000
................................................................................................................CACTACTTTACAGATGGCGCCCGAG....................................................25190.1630300000000
..................................................................................................................CTACTTTACAGATGGCGCCCGA.....................................................22200.1530200100000
.....................................................................................................................................................GAGACAATTCAAACGATAGTT---TTCTG...........26200.1530300000000
..................................................................................................................CTACTTTACAGATGGCGCCCGAGC...................................................24200.1530300000000
.....................................................................................................................CTTTACAGATGGCGCCCGAGC...................................................21200.1530300000000
...................................................................................................................TACTTTACAGATGGCGCCCGAG....................................................22200.1530300000000
............................................................................................................................................................TTCAAACGATAGTT---TTCTGG---G......21200.1530300000000
......................................................................................................................................................AGACAATTCAAACGATAGTT---TTCTGG---G......27200.1530300000000
....................................................................................................................................................TGAGACAATTCAAACGATAGTT---TTC.............25200.1530300000000
...........................................................................................................................................................ATTCAAACGATAGTT---TTCTGG---GG.....23200.1530300000000
...................................................................................................................TACTTTACAGATGGCGCCCGAGCA..................................................24200.1530300000000
........................................................................................................................................................ACAATTCAAACGATAGTT---TTCTGG---G......25200.1530100000200
.....................................................................................................CCT--AGGAT-CACTACTTTACAGATGG............................................................25170.1220200000000
..........................................................................................................AGGAT-CACTACTTTACAGATGGC...........................................................23180.1120200000000
.........................................................................................................................ACAGATGGCGCCCGAGCAGGGACTG-..........................................25180.1120200000000
.......................................................................................................T--AGGAT-CACTACTTTACAGATGGC...........................................................24180.1120000000020
................................................................................................................................................TG-TTGAGACAATTCAAACGATAGTT---T...............26180.1120200000000
.......................................................................................................................TTACAGATGGCGCCCGAGCAGGGACTG-..........................................27180.1120200000000
................................................................................................................CACTACTTTACAGATGGCGCCCG......................................................23190.1120200000000
.................................................................................................................ACTACTTTACAGATGGCGCCCGA.....................................................23190.1120200000000
......................................................................................................................TTTACAGATGGCGCCCGAGCAGG................................................23190.1120200000000
.............................................................................................................AT-CACTACTTTACAGATGGCGC.........................................................22190.1120200000000
........................................................................................................................TACAGATGGCGCCCGAGCAG.................................................20200.1020200000000
...................................................................................................................TACTTTACAGATGGCGCCCGA.....................................................21200.1020200000000
.................................................AATAAA-CTGTAGGT-G-ACCCTG-G--................................................................................................................22200.1020200000000
..................................................................................................................CTACTTTACAGATGGCGCCCGAG....................................................23200.1020000000200
.......................................................................................................................................................GACAATTCAAACGATAGTT---TTCTGG---.......25200.1020200000000
....................................................................................................................ACTTTACAGATGGCGCCCGAG....................................................21200.1020200000000
.......................................................................................................................................................GACAATTCAAACGATAGTT---TTCTGG---GG.....27200.1020200000000
......................................................................................................................................................AGACAATTCAAACGATAGTT---TTCTGG---GG.....28200.1020200000000
..................................................................................................................CTACTTTACAGATGGCGCCCGAGCA..................................................25200.1020200000000
......................................................................................................................................................AGACAATTCAAACGATAGTT---TTC.............23200.1020100100000
......................................................A-CTGTAGGT-G-ACCCTG-G--G...............................................................................................................18200.1020200000000
..................................................................................................................CTACTTTACAGATGGCGCC........................................................19200.1020020000000
......................................................................................................................TTTACAGATGGCGCCCGAGCAGGGACTA-..........................................28170.0610100000000
....................................................................................................GCCT--AGGAT-CACTACTTTACAGATGG............................................................26170.0610100000000
......................................................................................................CT--AGGAT-CACTACTTTACAGATGGCGT.........................................................27170.0610100000000
......................................................................................................CT--AGGAT-CACTACTTTACAGATGGCGCC........................................................28170.0610100000000
..........................................................................................................AGGAT-CACTACTTTACAGATGGCGC.........................................................25180.0610100000000
..........................................................................................................................................AGGGACTG-TTGAGACAATTCAAACGA........................26180.0610100000000
..........................................................................................................AGGAT-CACTACTTTACAGA...............................................................19180.0610100000000
..........................................................................................................AGGAT-CACTACTTTACAGATGG............................................................22180.0610100000000
.........................................................................................................................................CAGGGACTG-TTGAGACAAT................................19180.0610100000000
................................................................................................................................................TG-TTGAGACAATTCAAACGATAGTT---................25180.0610100000000
....................................................................................................................................CCGAGCAGGGACTG-TTGAGACAATTC..............................26180.0610100000000
.................................................................................................................................CGCCCGAGCAGGGACTG-TTGA......................................21180.0610100000000
..............................................................................................................................TGGCGCCCGAGCAGGGACTG-TTG.......................................23180.0610100000000
.....................................................................................................................................CGAGCAGGGACTG-TTGA......................................17180.0610000000100
.................................................................................................................................CGCCCGAGCAGGGACTG-TTGAGACAAA................................27180.0610100000000
................................................................................................................................................TG-TTGAGACAATTCAAACGATAGT....................24180.0610100000000
.................................................................................................................................CGCCCGAGCAGGGACTG-TTGAGACAAT................................27180.0610100000000
.........................................................................................................................ACAGATGGCGCCCGAGCAGGGACTG-T.........................................26180.0610100000000
.........................................................................................................................................CAGGGACTG-TTGAGA....................................15180.0610000000100
................................................................................................................CACTACTTTACAGATGGCG..........................................................19190.0510100000000
.....................................................................................................................CTTTACAGATGGCGCCCGAGCAGG................................................24190.0510100000000
................................................................................................................CACTACTTTACAGATGGCGCCCGAGC...................................................26190.0510100000000
................................................................................................................CACTACTTTACAGATGGCGCCCGA.....................................................24190.0510100000000
...................................................................................................................TACTTTACAGATGGCGCCCGAGCAGGGAC.............................................29190.0510100000000
......................................................................................................................TTTACAGATGGCGCCCGAGCAGGGAC.............................................26190.0510100000000
.....................................................................................................................CTTTACAGATGGCGCCCGAGCAGGGAC.............................................27190.0510100000000
................................................................................................................CACTACTTTACAGATGGCGA.........................................................20190.0510100000000
................................................................................................................CACTACTTTACAGATGGCGCCTT......................................................23190.0510100000000
......................................................................................................................TTTACAGATGGCGCCCGAGCAGGG...............................................24190.0510100000000
.....................................................................................................................................................GAGACAATTCAAACGATAGTT---TT..............23200.0510100000000
........................................................................................................................................................ACAATTCAAACGATAGTT---TTCTGG---GG.....26200.0510100000000
................................................................................................................................................................AACGATAGTT---TTCTGG---GG.....18200.0510100000000
......................................................................................................................................................AGACAATTCAAACGATAGTT---TT..............22200.0510100000000
...................................................................................................................TACTTTACAGATGGCGCCCGAA....................................................22200.0510100000000
.......................................................................................................................................................GACAATTCAAACGATAGTT---TTCTGG---G......26200.0510100000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---T......20200.0510100000000
.......................................................................................................................TTACAGATGGCGCCCGAGCAGGG...............................................23200.0510000000010
..................................................................................................................CTACTTTACAGATGGCGCCC.......................................................20200.0510100000000
......................................................................................................................TTTACAGATGGCGCCCGA.....................................................18200.0510100000000
.....................................................AA-CTGTAGGT-G-ACCCTG-G--................................................................................................................18200.0510100000000
....................................................................................................................................................TGAGACAATTCAAACGATAGT....................21200.0510100000000
..................................................ATAAA-CTGTAGGT-G-ACCCTG-G--G...............................................................................................................22200.0510000000100
...................................................TAAA-CTGTAGGT-G-ACCCTG-G--T...............................................................................................................21200.0510000001000
......................................................................................................................................................AGACAATTCAAACGATAGTT---TTCTGC---.......26200.0510010000000
.....................................................................................................................CTTTACAGATGGCGCCCGAG....................................................20200.0510100000000
....................................................AAA-CTGTAGGT-G-ACCCTG-G--G...............................................................................................................20200.0510000001000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGGC...23200.0510100000000
.................................................................................................................................................G-TTGAGACAATTCAAACGATAGTT---T...............25200.0510100000000
......................................................................................................................................................AGACAATTCAAACGATAGTT---TTCT............24200.0510010000000
...................................................TAAA-CTGTAGGT-G-ACCCTG-G--GCAT............................................................................................................24200.0510100000000
...................................................TAAA-CTGTAGGT-G-ACCCTG-G--TA..............................................................................................................22200.0510100000000
...........................................................................................................................................................ATTCAAACGATAGTT---TTCTGG---GGG....24200.0510100000000
....................................................................................................................................................TGAGACAATTCAAACGATAGTT---T...............23200.0510100000000
....................................................................................................................................................TGAGACAATTCAAACGATAGTT---TTCTG...........27200.0510100000000
....................................................................................................................ACTTTACAGATGGCGCCCGAAA...................................................22200.0510100000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---AC.....21200.0510010000000
...................................................................................................................TACTTTACAGATGGCGCCCG......................................................20200.0510100000000
...................................................TAAA-CTGTAGGT-G-ACCCTG-G--GCAG............................................................................................................24200.0510010000000
.............................................................................................................................................................TCAAACGATAGTT---TTCTGG---GGC....22200.0510010000000
....................................................AAA-CTGTAGGT-G-ACCCTG-G--GT..............................................................................................................21200.0510100000000
droWil2
------------------------T---CGGG-GTCTCAAGATCAAATAAATGTT-CTGTAGACTGGACTCTG-G-----GACTGAGAATTG-TACCCCAGCCA---G----AGCTTCCTTACAGATGGCGCCCGAGCAGGGAC---------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................TGGACTCTG-G-----GACTGAGAATTG-TACCC...........................................................................................27201.1523000230
...................................................................................TGAGAATTG-TACCCCAGCCA---G----AGCT.........................................................................25201.0521015060
....................................................................................GAGAATTG-TACCCCAGCCA---G----AGC..........................................................................23200.5010010000
...................................................................................TGAGAATTG-TACCCCAGCCA---G----AGCTTC.......................................................................27200.15303000
......................................................................................................................CTTACAGATGGCGCCCGAGCAGG................................................23200.10200020
.....................................................................................AGAATTG-TACCCCAGCCA---G----AGCTTCCT.....................................................................27200.10200020
...................................................................................................AGCCA---G----AGCTTCCTTACAGATGG............................................................23200.05100010
.........................................................................................TTG-TACCCCAGCCA---G----AGCTTCCTTACAG................................................................28200.05100010
.................................................................................ACTGAGAATTG-TACCCCAGCCA---G----AG...........................................................................25200.05101000
..................................................................................CTGAGAATTG-TACCCCAGCCA---G----AGCT.........................................................................26200.05101000
..............................................ATAAATGTT-CTGTAGACTGGACTCTG-...................................................................................................................26200.05101000
...................................................TGTT-CTGTAGACTGGACTC......................................................................................................................19200.05101000
........................................................................................................................TACAGATGGCGCCCGAGCAG.................................................20200.05100010
....................................................................................GAGAATTG-TACCCCAGCCA---G----AG...........................................................................22200.05100010
droMoj3
------------------------GT---------CTCGGCAATTTACAAATATCCTTGTAAAT-G-AACCTGGG--GGAGACTGAGACTTG-TACCCCGGCCGTTGAAAT-CACTTCTTTACAAGTGGCGCCCGAGCAGGGACCT---GAGATTAATGA--GGATGGTTTCTTTC--T---GGGACTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................ATCCTTGTAAAT-G-AACCTGGG--GG..............................................................................................................2334.00121200000
....................................................ATCCTTGTAAAT-G-AACCTGGG--G...............................................................................................................2233.67111000010
....................................................ATCCTTGTAAAT-G-AACCTGGG--GGA.............................................................................................................2431.334400000
....................................................ATCCTTGTAAAT-G-AACCTGGG--................................................................................................................2131.003300000
....................................................ATCCTTGTAAAT-G-AACCTGG...................................................................................................................2030.672200000
.....................................................TCCTTGTAAAT-G-AACCTGGG--G...............................................................................................................2130.672200000
.....................................................TCCTTGTAAAT-G-AACCTGGG--GG..............................................................................................................2230.331100000
........................................................TTGTAAAT-G-AACCTGGG--GGAGACTG........................................................................................................2530.331000001
.....................................................TCCTTGTAAAT-G-AACCTGGG--GGAGAC..........................................................................................................2630.331100000
...................................................TATCCTTGTAAAT-G-AACCTGGG--GG..............................................................................................................2430.331100000
........................................................TTGTAAAT-G-AACCTGGG--GGA.............................................................................................................2030.331100000
..................................................................................................................CTTCTTTACAAGTGGCGCC........................................................19160.132100010
..................................................................................................................CTTCTTTACAAGTGGCGCCCGAGC...................................................24160.132100010
..................................................................................................................CTTCTTTACAAGTGGCGCCC.......................................................20160.132000020
.............................................................................................................AT-CACTTCTTTACAAGTGGCGCC........................................................23100.101100000
................................................................................................................CACTTCTTTACAAGTGGCGC.........................................................20100.101100000
................................................................................................................CACTTCTTTACAAGTGGCGCCC.......................................................22100.101000010
..................................................................................................................CTTCTTTACAAGTGGCGCCCGAG....................................................23160.061100000
..................................................................................................................CTTCTTTACAAGTGGCGCCT.......................................................20160.061100000
..................................................................................................................CTTCTTTACAAGTGGCGCCCGAGCA..................................................25160.061100000
..................................................................................................................CTTCTTTACAAGTGGCGCCCGAGCATT................................................27170.061100000
droKik1
------------------------CT--CAACTGTCTCAAAGATAAATAAATTTATCTGATGA---------G-G--GCGGACTGAGAC--GCGACCCCAGCA-----AAA-CGCATCCTTACAGATGGCGCCCGAGCAGGGACTAGTTGAGG-----------AAATT-------TAGGGGAAAATTCSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------C----GGC-GTTTCGGTGAATTACAAATATTCTTGTAAAG-G-ACTCTG-GTACTCGACTGAGATCTG-TACCCCGGCCA---AGAA-AACATCCTTACAAGTGGCGCCCGAACAGGGACA--CCGAGACTAG-----------C-------T-T---GGGATTTSizeHit CountTotal NormTotal
No Reads
droEle1
------------------------GG-------------------------------------C-G-ACTTTG-T--CCGGACTGAGAC--A-TACCCCAGCCA---AGAA-AACTACTTTACAGATGGCGCCCGATCAGGGACTT-AC--GG--AATCA--AGATTAC-------TAA---AGAGTTGSizeHit CountTotal NormTotal
No Reads
droRho1
------------------------C-------------------TTATAAATTTT-CTGTAAGC-G-ACCCTG-G--CCAGACTGAGAC--A-TATCCCAGCCA---GCAT-AACTACTTTACAGATGGCGCCCGAGCAGGGACTT-A--GGG--AATCA--GGATAAT-------TAG---AGAATTCSizeHit CountTotal NormTotal
No Reads
droTak1
------------------------TTC-CAAA-GTCCC--CAACTTATAAATTTTTCTGTAAGC-G-ACCCTG-G--CCGGACTGAGCC--A-TATCCCAGCCA---GGA--AACTACGTTACAGATGGCGCCCGAGCAGGGACTA-ACAGGG--AATCA--GGATAAT-------TAG---AGGATTASizeHit CountTotal NormTotal
No Reads
droEug1
------------------------GT---------CTTAGT-ACTTACAAATATTTCTGTAGAA-G-ACCCTG-G--GCTGACTGAAGCTTA-TATCCCGGCCC--GTGATTAGCATCCTTACAGATGGCGCCCGAGCAGGGACTA----------GGCA--GGATA------------------ATTCSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:22 PM