ID:

dpe_490

 Coordinate:

scaffold_0:11772623-11772856 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.4 -42.4 -42.4

Flybase annnotation

CDS [Dper\GL24551-cds]; exon [dper_GLEANR_6833:2]; CDS [Dper\GL24551-cds]; exon [dper_GLEANR_6833:3]; intron [Dper\GL24551-in]

No Repeatable elements found

mature
  1. scaffold_1058:6936-6953 -
  2. scaffold_443:10678-10695 +
  3. dpe_490  scaffold_0:11772814-11772831 +
  4. scaffold_0:11780166-11780183 +
  5. scaffold_7:1441581-1441598 +
  6. scaffold_11000:345-362 -
  7. scaffold_147:49857-49874 +
  8. scaffold_147:58663-58680 +
  9. scaffold_147:101839-101856 +
  10. scaffold_147:113888-113905 +
  11. scaffold_2771:1445-1462 -
  12. scaffold_3094:1680-1697 -
  13. scaffold_3642:1545-1562 -
  14. scaffold_4643:711-728 +
  15. scaffold_4845:1452-1469 -
  16. scaffold_1508:3592-3609 +
  17. scaffold_6263:873-890 -
  18. scaffold_8452:352-369 +
  19. scaffold_5846:1058-1075 -
star
  1. scaffold_1058:7120-7138 -
  2. scaffold_443:10493-10511 +
  3. dpe_490  scaffold_0:11772629-11772647 +
  4. dpe_2018  scaffold_7:1441396-1441414 +
  5. scaffold_7:1445957-1445975 +
  6. scaffold_147:49672-49690 +
  7. scaffold_2771:1629-1647 -
  8. scaffold_3347:1427-1445 +
  9. scaffold_3450:2448-2466 -
  10. scaffold_3642:1729-1747 -
  11. scaffold_4073:928-946 -
  12. scaffold_1592:3097-3115 -
  13. scaffold_4643:526-544 +
  14. scaffold_4845:1636-1654 -
  15. scaffold_1371:136-154 -
  16. scaffold_1508:3407-3425 +
  17. scaffold_5322:1459-1477 +
  18. scaffold_2519:2992-3010 +
  19. scaffold_6263:1058-1076 -

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTCGAGACTCTCCTATTCCGTGTACATCTGGAATATGTTCACTCTGGAAGTAAACAGCAGAATTCTACGGACCAATACATATTTTTCGAACTACAACTTTGTAAGTTTTGTTTTGGATAGTTGAAGGAAACTAGTGGATTATAACAAATGTATAATATTTTATGCTTTGCGGATGCTTAATTTCTGGTCTGTCATTGGGATCACTATTTTGATGTCGGATGTGTTTTATGTTATCATTGAGGCTCCTTTTGGCGGACTCGATAGTCTTCTACGAACCCGGCAGCCACGATCTCCAAGCGAACAAAAGCAGTCGTCAGTAGATGTCCAGCAGGA
********************************************************..(((((.(((((...((((.(((........((((((((....))).)))))))).)))).(((((......))))))))))......((((.((((((....))))))))))............)))))((((((((..((((...((....(((((...((......))....)))))...))..))))..)))))))).*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V042
embryo
 V057
head
.................................................................................................................................................................................................................................................GGCTCCTTTTGGCGGACT........................................................................... 18 0 19 0.42 8 8 0 0 0
........................................................................................................................................................................................................................................TATCATTGAGGCTCCTTTTGGCGGACT........................................................................... 27 0 9 0.33 3 3 0 0 0
.........................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTTGGCGGACTCG......................................................................... 28 0 9 0.33 3 3 0 0 0
......................................................................................................................................................................................................................................GTTATCATTGAGGCTCCTTTTGGC................................................................................ 24 0 9 0.22 2 2 0 0 0
................................................................................................................................................................................................................................................AGGCTCCTTTTGGCGGACT........................................................................... 19 0 16 0.19 3 3 0 0 0
........................................................AGCAGAATTCTACGGACCA................................................................................................................................................................................................................................................................... 19 0 19 0.16 3 3 0 0 0
................................................AAGTAAACAGCAGAATTCTACGGAC..................................................................................................................................................................................................................................................................... 25 0 19 0.16 3 3 0 0 0
............................................................................................................................................................................................................................................ATTGAGGCTCCTTTTGGCGGACT........................................................................... 23 0 16 0.13 2 2 0 0 0
...............................................................................................................................................................................................................................................GAGGCTCCTTTTGGCGGACT........................................................................... 20 0 16 0.13 2 2 0 0 0
.....................................................................GGACCAATACATATTTTTCGAACT................................................................................................................................................................................................................................................. 24 0 16 0.13 2 2 0 0 0
.................................................................CTACGGACCAATACATATTTTTC...................................................................................................................................................................................................................................................... 23 0 17 0.12 2 2 0 0 0
.........................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTTGGCGGACT........................................................................... 26 0 9 0.11 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................................GCAGTCGTCAGTAGATGTCC....... 20 0 18 0.11 2 2 0 0 0
.......................................................CAGCAGAATTCTACGGACCAAT................................................................................................................................................................................................................................................................. 22 0 19 0.11 2 2 0 0 0
.........................................................GCAGAATTCTACGGACCA................................................................................................................................................................................................................................................................... 18 0 19 0.11 2 2 0 0 0
.........................................................GCAGAATTCTACGGACCAATACAT............................................................................................................................................................................................................................................................. 24 0 19 0.11 2 2 0 0 0
..................................................GTAAACAGCAGAATTCTACGGACC.................................................................................................................................................................................................................................................................... 24 0 19 0.11 2 2 0 0 0
....................................................AAACAGCAGAATTCTACGGACCAA.................................................................................................................................................................................................................................................................. 24 0 19 0.11 2 2 0 0 0
.....................................................AACAGCAGAATTCTACGGACCAAT................................................................................................................................................................................................................................................................. 24 0 19 0.11 2 2 0 0 0
.....................................................AACAGCAGAATTCTACGGACC.................................................................................................................................................................................................................................................................... 21 0 19 0.11 2 2 0 0 0
..................................................................................................................................................................................................................................TTATGTTATCATTGAGGC.......................................................................................... 18 0 10 0.10 1 1 0 0 0
........................................................................................................................................................................................................................................TATCATTGAGGCTCCTTTTGGCGGACC........................................................................... 27 1 11 0.09 1 1 0 0 0
.........................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTTGGCGGACG........................................................................... 26 1 11 0.09 1 1 0 0 0
................................................................................................................................................................................................................................................................................................GATCTCCAGTAGAACAAAAG.......................... 20 3 12 0.08 1 0 1 0 0
...........................................................................................................................................................................................................................................CATTGAGGCTCCTTTTGGCGGACTC.......................................................................... 25 0 15 0.07 1 1 0 0 0
............................................................................................................................................................................................................................................ATTGAGGCTCCTTTTGGCGGACTC.......................................................................... 24 0 16 0.06 1 1 0 0 0
..................................................................................................................................................................................TAATTTCTGGTCTGTCATTGGGAT.................................................................................................................................... 24 0 16 0.06 1 1 0 0 0
................................................................................CATTTTTCGAACTACAACTTT......................................................................................................................................................................................................................................... 21 1 16 0.06 1 1 0 0 0
.....................................................................................................................................................................................TTTCTGGTCTGTCATTGGG...................................................................................................................................... 19 0 16 0.06 1 1 0 0 0
...................................................................................................................................................................................AATTTCTGGTCTGTCATTGGGA..................................................................................................................................... 22 0 16 0.06 1 0 0 1 0
.................................................................................................................................................................................TTAATTTCTGGTCTGTCATTGGGAT.................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
...................................................................................................................................................................................AATTTCTGGTCTGTCATTGGGAT.................................................................................................................................... 23 0 16 0.06 1 1 0 0 0
..................................................................TACGGACCAATACATATTTTTC...................................................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................CTCCAAGCGAACAAAAGCAGTCGTCAGT............... 28 0 17 0.06 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................CTCCAAGCGAACAAAAGCAGTCGTCAGTA.............. 29 0 17 0.06 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................................GCAGTCGTCAGTAGATGTC........ 19 0 18 0.06 1 1 0 0 0
............................................................................................................................................................................................................................................ATTGAGGCTCCTTTTGGCGGA............................................................................. 21 0 18 0.06 1 0 1 0 0
..............................................................................................................................................................................................................................................................................................................CAAAAGCAGTCGTCAGTAGATGTC........ 24 0 18 0.06 1 1 0 0 0
...............................................................................................................................................................................................................................................GAGGCTCCTTTTGGCGGACG........................................................................... 20 1 18 0.06 1 1 0 0 0
................................................................................................................................................................................................................................................AGGCTCCTTTTGGCGGACC........................................................................... 19 1 18 0.06 1 1 0 0 0
...............................................................................................................................................................................................................................................GAGGCTCCTTTTGGCGGACC........................................................................... 20 1 18 0.06 1 1 0 0 0
.................................................AGTAAACAGCAGAATTCTACGGACC.................................................................................................................................................................................................................................................................... 25 0 19 0.05 1 1 0 0 0
..................................................GTAAACAGCAGAATTCTACGGACCA................................................................................................................................................................................................................................................................... 25 0 19 0.05 1 1 0 0 0
........................................................AGCAGAATTCTACGGACC.................................................................................................................................................................................................................................................................... 18 0 19 0.05 1 1 0 0 0
.................................................AGTAAACAGCAGAATTCTACGGAC..................................................................................................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0 0
..............................................................ATTCTACGGACCAATACAT............................................................................................................................................................................................................................................................. 19 0 19 0.05 1 0 0 1 0
......................................................ACAGCAGAATTCTACGGACC.................................................................................................................................................................................................................................................................... 20 0 19 0.05 1 1 0 0 0
.....................................................AACAGCAGAATTCTACGGACCA................................................................................................................................................................................................................................................................... 22 0 19 0.05 1 1 0 0 0
......................................................................................................................................................................................................................................................CTTTTGGCGGACTCGATA...................................................................... 18 0 19 0.05 1 1 0 0 0
.................................ATATGTTCACTCTGGAAGTA......................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.................................ATATGTTCACTCTGGAAGT.......................................................................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0
......GACCCTCCTATTCCGTGTAC.................................................................................................................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0
..................................................................TACGGACCAATACATATT.......................................................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0
.................................ATATGTTCACTCTGGAAG........................................................................................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0
..............................................................................GATATTTTCCGAACTACTA............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1
.................................................................CTACGGACCAATACATATTTTT....................................................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

AGAGCTCTGAGAGGATAAGGCACATGTAGACCTTATACAAGTGAGACCTTCATTTGTCGTCTTAAGATGCCTGGTTATGTATAAAAAGCTTGATGTTGAAACATTCAAAACAAAACCTATCAACTTCCTTTGATCACCTAATATTGTTTACATATTATAAAATACGAAACGCCTACGAATTAAAGACCAGACAGTAACCCTAGTGATAAAACTACAGCCTACACAAAATACAATAGTAACTCCGAGGAAAACCGCCTGAGCTATCAGAAGATGCTTGGGCCGTCGGTGCTAGAGGTTCGCTTGTTTTCGTCAGCAGTCATCTACAGGTCGTCCT
***************************************************************************..(((((.(((((...((((.(((........((((((((....))).)))))))).)))).(((((......))))))))))......((((.((((((....))))))))))............)))))((((((((..((((...((....(((((...((......))....)))))...))..))))..)))))))).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 V111
male body
.....................................................................................................................................................................................................................................................................................GGCCGTCGAGGCTAGAGGATC.................................... 21 3 7 0.14 1 1 0
............GGATAAGGCACATGTAGAC............................................................................................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:11772573-11772906 + dpe_490 TCTCGAGACTCTCCTATTCCGTGTACATCTGGAATATGTTCACTCTGGAAGTAAACAGCAGAATTCTACGGACCAATACATATTTTTCGAACTACAACTTTGTAAGTTTTGTTTTGGATAGTTGAAGGAA------------A-----CTAGTGGA----------------TTATA-ACAAAT-GT---AT----------AAT-ATT--------TTATGCTTTGCGGATGCTTAATTTCTGGTCT-GTCATTGGGATCACTATTTTGATGTCGGA-TGTGTTTTATGTTATCATTGAGGCTCCTTTT---GGCGGACTCGATAGTCTTCTACGAACCCGGC-AGCCACGATCTC-----CAAG-------------------------------------CGAACAAAAGCAGTCGTCAGTAGATGTCCAGCAGGA
dp5 2:2913462-2913795 - TCTCGAGACTCTCCTATTCCGTGTACATCTGGCATATGTTCACTCTGGAAGTAAACAGCAGAATTCTACGGACCAATACATATTTTTCGAACTACAATTTGGTAAGTTTTGTTTCAGATAGTTGATAGAA------------A-----CTAGTGGA----------------TTATA-ACAAAT-GT---AT----------AAT-ATT--------TTATGCTTTGCAGATGCTTAATTTCTGGTCT-GTCATTGGGATCACTGTTTTGATGTCGTA-TGTGCTTTATATTATCATTGAGGCTCCTTTT---GGCGGACTCGATAATCTTCTACGAACCCGAC-AGCCACGAGCTC-----CAAG-------------------------------------CGAACAAAAGCAGTCGTCAGTAGATGTCCAGCAGGA
droWil2 scf2_1100000004943:2473586-2473826 - TCTCACGGCTCTCCTACTCCGTCTATATCTGGCACATCTTCCTTCTGGAAGTTCACCACATGCTGTTACGTTCACATACATACTTTTCGGACTATCAAATGGTAAGCTGGATGCACATT--------------------------------CCTAA---------A-----AGAGAT-TT------------TT----------A-ACT--------AATTTACTGACAGATGTTGAATTTCTGGTCT-GACTTTGGATTTACCCTGTTTATGTCCTA-TGTTATGTACATTGTGATTGAGGCACCTTTGGTTGGTGGATT----------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13042:3589626-3589943 - TGTCGAAGCTCTCCTACGGCGCCTACATCTGGCACATACTCATCGAGATTCTCAATGGCGGCATCACGCGCACCAGCACCTACTTCAGCGACTATCAAGTGGTGCGTTATCTTACGCATCTGTT------------GCG-----CCTTCTGCCATATATCTATAAT-------------T----------GT----------GTT-TTT--------TTTTTTATTGCAGATGTTGCGCTTCTGGCAT-GACTTTGGCTTTACCATTTTGTTGGCCTA-TTTCATGTTCCTCTTGGTCGAGGCACCTTTC---GGCGGCCTGGAGATGTTATTGTTTCCCACTCGCGCGC---CCAG----------------------AAGCCAGCCTG---------CTCC-----------------------AGCTGTCAAGAGC
droMoj3 scaffold_6308:807493-807794 + TGTCGAGGCTCTCCTATTCCGCCTACGTGTGGCACATATTCATCCAGGAAATCAATAGCAGACGCTATCAGACCAACACCTTCTTCTCCAATTACGAAATGGTATTTAACATCTGCT-TGAT--------------GTGAG--ACC---TTAGCTA----------------AACTTT-CTT----------CT----------T-CTT--------CTTATTTTGATAGATGCTCAAATTCTGGGCGGGACTTGGGCTTTACTCTACTTACTGCCTACCCTGATGTACATCATCATTGAGGCACCGCTG---GGCGACTTGGAGGGCCTGCTACTACCCAAAC-CGTAGACCC-------------------------------------------------------------------AGTCCCCAAGCCAGCGAA
droGri2 scaffold_14853:10112533-10112832 - TGTCAAAACTCTCGTTCTGCGTTTATATCTGGCACCTTTTCATTGTGGACTTCAACGCCGGCATTGGTCGCACCAACACCTATTTCAGCGATTATCAAGTGGTAAGCATACATCATATG-------------T--CAGCACAT-----CTTGCATA--TCT-------------ATAG-TA-------TA--TA----------C-TTTGTTTATATGGACACCTTTAAGATGTTGCGCTTTTGGCAT-GACTTTGGCCTTACGCTTCTATTGGCCTA-CCTTATGTATATTCTGGTCGAGGCACCTTTC---GCTGCCCTGGAGATGCTATTGCTGCCAGCTC-GGAGGCCACCTG------------------------------------------CTCC-----------------------------------A
droAna3 scaffold_13340:20114673-20114981 + TCTCAAGGCTCTCGTATTCGGTCTACATCTGGCACATGTTCATCCAGGAGGTTAACAGCAGGAATGTACGGACAAGTACCTACTTCTCGGGATACACTGTGGTAAGATACATATAATA--------------ATGA-----AT-----TTTGATTG-----------------------CAAAAG--ATT--TC----------A-ACT--------TTCTTATCTATAGATGAAAAATTTCTGGTCA-GACTTTGGCATAAGCTTGGTTATGTCCTA-TGCATTATTTCTTATAATTGAGGCTCCAGTC---GGTGGACTAGATGCCCTCTGGAGACCTCGTA-CAAACACG---A-AGCCCAAT-------------------------------------CAGCCAAT-------------ATTGACATCAGTGGA
droBip1 scf7180000396413:2265174-2265466 - TCTCCAGGATCTCTTACTCTGCCTACATTTGGCATGTATTTGTCCAGGAACTCAATAACAGAAATACCAGAACCAATTCTTATTTCTCCGATTACCAAGTGGTAGGTTTTTATCTTTCC--TTAAAAATG------------A-----CTA----------------ACGTGCATTAC-TTA--------A-TA----------A-AAC--------CTTATATTCACAGATGCTAAAGTTCTGGTCA-GACATGGGTATGATCCTTACCATGGCTAT-TTTCTTTTACCTAATCATAGAAGCACCTTTT---AGTGGAGTGGAGTACTTCCTCAGACCAGTGA-AAAAATCTGTCG--------------------------------------------------------------TCAG--------------TA
droKik1 scf7180000302639:3164305-3164613 + TCTCCAGGCTCTCCTACTCAATGTACATCTGGCACATGTTCATCCAGGAGGTGAACAGCAGGAATGTCAGGACGAACTCTTATTTCTCGAACTACACTGCGGTAAATTTAATTTGTATT-------------TCAC-------AGC--------------------------TTGGC-TTCAAT-TT---AA----------ATT-GAT--------CTACTTCTTGCAGATGGAACACTTTTGGTTC-GACTTGGGCTTTACTGTGCTGATGTCTTT-TCTTTTGTACATTTTAATTGAGGCCCCTCTG---TGCGGATTTGACAGCCTACTTCGGCCTCGCA-GGATCTCACCAGCAG-----T------------TGAAAGGCCCC-AGCTAATTT---------------------C---------------AGA
droFic1 scf7180000453906:416502-416824 + TCTCTAGGCTCTCTTACTCCGTCTTCCTTTTTCACTTGTTCATTGAGGAGATGAACGGCAGAAATGGAAGGACGAATGGTTACTTCTCAGACTACACAATTGTAGGTTTTAAAAAGCAACT--AG---AAGTTTGC------------------------------AGTTCAATTTTTAATA----------TT----------A-ACT--------CTTTTTATTATAGATGCGCAACTTCTGGACA-ACTATGGGATTCACATGCTTGATGGCTTA-CGTAATGCACATCCTCATTGAGGCTCCTTTC---GGTGGACTTGATCTCTTCTTGCGACCGAAAC-CCAAGAGCCCTG------------------------------------------CCTTTGTCAAACAAAAATCCCAAGTAGA----CAACGGAA
droEle1 scf7180000491261:157062-157381 + TCTCCAGGCTCTCCTATTCCGTCTACATTTGGCACATGTTCTGCCAGGAGCTGAACGTGAGAAGTACTAGGACCAATTCGTATTTCTCGGACTACACAATTGTGGGTTTCAACAAGCTTAA--------------------AT-----CTGTTTGG----------------TAATA------T---AT-TT----------CAT-ATC--------TCCTACCTTGCAGATGCTCAACTTCTGGTCG-ACCTTTGGATTCACCGTGCTGTTTGCCTA-TGTAATGTACTTGCTAGTGGAGGCACCTTTT---GGTGGGCTTGATCTTTTACTGGGACCCAAAG-GGAAAAGCCCTC------------------------------------------CTCCCGTTAAACAGAAATCACAGATAGATG-ATAACGGGT
droRho1 scf7180000779872:322295-322597 - TATCGAGGCTCTCCTATTCCGTCTTCATATGGCACCAGTTCTTCGTAGAGGCGAACGTCAGAAATACAAGAACAAATACCTACTTCTCGGACTACAGAATTGTAGGTTTCAACAAATTTAAT-----CA---TTGC--CGG--AAC--------------------------TTTTACAT----------AT----------TTT-ATC--------TATTATATTGCAGATGCTCAATATCTGGTCA-ACATTTGGATGCACCGTGCTGTTTTCTTA-TGTGATGTATCTACTCATCGAAGCACCTTTT---GGAGGTCTTGATCATTTCCTGAAGCCAAAAA-GAAATAACACTC------------------------------------------CTGTAGTCA---------------------AACAAAAAAC
droBia1 scf7180000302075:4955427-4955700 - TTTCAAGACTCTCCTACTCCATGTACATCTGGCACATGTTCGTTCAAGAGGTGAACAGCCGCAGTGTCAGGACAAACACATATTTCTCCAACTACTCCATGGTATGTTATATTTTAAATAAT--------------AGGCAAA-----CTAGTTTA----------------TTCTAG-CA-------TT--TC----------C-CTT--------CTTTTTTTTTCAGATGAAACATTTCTGGCAT-GATTTTGGATTTACTGCACTGATGGCTTA-CCTGTTGTACCTCATCATCGAAGCTCCTTTG---GGTGGATTTGATAGTCTTCTAAGGCCTCAG------------------------------------------------------------------------------------------------
droTak1 scf7180000415382:435725-436050 - TCTCGAGACTCTCGTATTCCGTCTACATCTGGCACATCTTTATCCAAGAAATTAACTCCAAGAGTATAAGAACAATCTCGTATTTCTCGGACTACCAAGTTGTAAGTACCTAAACTA---------------TCGCACTTAAA-----CTTCTTGG----------------TTCTA-ATA--T--------------------A-TAT--------AATCGCCTCACAGATGCTTAGATTCTGGACA-ACCTTTGGATTCACCGTGCTGCTTGCTTT-CTTCATGTATCTCATTGTTGAGGCCCCCATT---GGCGGACTGGACCTTTTTATACGACCTCAGA-TAAAGGCATCTGCTA-----G------------TAGCAAGTCAA-AGGAAAATT---------------------CAAACGAAGTGCAGCAGAA
droEug1 scf7180000409798:996215-996521 + TCTCTAGGCTGTCTTATTCCGTGTTTATTTGGCATATGTTCATCCAGGAGGTGAATGCCAGAAGTATGAGAACGAATTCGTACTTCTCCGATTACAGAATTGTAAGTTTTAAAAAGTT----------------GC------------------------------CGTATTTCCTTTACTA----------TT----------AAACT--------ATCTCTTTTGCAGATGCTCAACTTCTGGTCA-ACCTTTGGTATCACCGTGCTTTTTGCCTA-TGTAATGCACTTGCTCATTGAGGCACCTTTC---GGTGGAATTGACCATTTCCTGCGACCGCGAC-AAAATAGTCCTC------------------------------------------CTATTGTTGAAAAGAAATCACAGATAGAT----------G
dm3 chr2R:9012857-9013151 + TCTCCAGGCTTTCGTATTCTGTTTTTATATGGCACATGTTCTTCATGGAGATGAACGCACGGAGTACCAGGACTAGCACATACTTCTCGGATTACGGAATGGTAGGATTATTAAATAATAAT----------------------GCTTTTGC--------------TG-----------T-------ATC--TC----------A-AAT--------ATCAAATTTTCAGATGCTTAACTTCTGGTCG-ACCCTAGGGTTCACCTTGCTGTTTTCCTA-TGCAATGCATCTGCTCATTGAGGCACCAATT---GGCGGACTTGACATTTTCCTAAGGCCAAAGG-GAAAGATCTCTC------------------------------------------CTACCGAAAAACAGACA---------------------TC
droSim2 2r:20794318-20794644 - dsi_5713 TCTCGAGACTATCGTACTCCGTCTACATCTGGCACGTTTTTATGCAGGAGCTGAACGCCCGAAGAACTAGGACCAACGCGTACTATTCGGACTACAACATGGTATGTTTTTTGCTTA--------CGAAG---------AC--------TACT-------------AATATAACTACTACTA----------AT----------C-ATA--------TATATTTCCGCAGATGCTCAAATTCTGGTCA-GATATTGGATTCACCTTCTTGCTTTCCTA-TCTGCTCTACCTGATCATCGAAGCACCTTTC---AATGGACTTGATATTTTCATCCGGCCTCAAA-GGAAGGCACCTCCTA-----C------------CATGAAAACCC-AGACAAACT---------------------CAGAACCTACGCAGGAGAT
droSec2 scaffold_23:188616-188930 - TCTCGAGGCTATCGTACTCCGTCTACATCTGGCACGTTTTTATGCAGGAGCTGAACGCCCGAAGAACTAGGACCAACACGTACTATTCGGACTACAACATAGTATGTTTTTCGCTTA--------CGAAG-------------------------A----------------CTACA-TCTAAT--------------------C-AAA--------TATATTTCCGTAGATGCTCAAATTCTGGTCA-GATATTGGATTCACCTTCTTGCTTTCCTA-TCTGCTCTACCTGATCATCGAAGCACCTTTC---AATGGACTTGATATTTTCATCCGGCCTCAAA-GGAAGGTAACTCCTA-----A------------CATGAAAACCC-AGACGAACT---------------------CAGAACCTACGCAGGAGAT
droYak3 X:11858584-11858916 - TGTCCAAGCTCTCCTACTCCGCCTACATCTGGCACATCTTCATCGAGGAGGTCAACCACAGACGCGTTCAGAACAACACGTACTTCTCCAACTATGAAGTGGTAAGTGTGTAACAGAATCAC----CTAA---------AG--------TTCC-------------AATCCGACTTGACCGC----------TT----------C-ATT--------CCCAACTCCACAGATGCTCAGCTTCTGGTCC-ACCTTGGGGTTCACCCTGCTAATGTCCTA-TGTGCTCTACGTTATAATTGAGGCGCCTCTG---GAGGGCTTGGAAAGAATGATATTTCCCAATC-ACCGAAGTGCGC-----CAGCCGGAAAGGATCAGCCGCAAACCG--------------------------------AGTCCGAGTCCCGAACGA
droEre2 scaffold_4820:8624919-8625218 + TTTCTAGGCTTTCCTACTCCGTGTATATTTGGCACATGTTTGTCCAAGAGGTGAATAGCAGAAATGTGCGGACTAATACATACTTCAGCAACTACTTCGTGGTAAGTCATGGTTGTAATAGT--------------------------------------------------ACTTGTAACA----------TTGATGATTTAAC-ATT--------ACTTATCTTGCAGATGCAACGTTTCTTTTAT-GACCTTGGCTTTACTGTGCTTATGTCCTA-CATTTCGTACCTAATAATCGAAGCCCCGCTG---TGTGGATTTGATGGTCTTTTGCGGCGACAAA-AGATCCCTTCTGCTA-----C------------CCTTCAAGCAA-A----------------------------------------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TCTCGAGACTCTCCTATTCCGTGTACATCTGGAATATGTTCACTCTGGAAGTAAACAGCAGAATTCTACGGACCAATACATATTTTTCGAACTACAACTTTGTAAGTTTTGTTTTGGATAGTTGAAGGAA------------A-----CTAGTGGA----------------TTATA-ACAAAT-GT---AT----------AAT-ATT--------TTATGCTTTGCGGATGCTTAATTTCTGGTCT-GTCATTGGGATCACTATTTTGATGTCGGA-TGTGTTTTATGTTATCATTGAGGCTCCTTTT---GGCGGACTCGATAGTCTTCTACGAACCCGGC-AGCCACGATCTC-----CAAG-------------------------------------CGAACAAAAGCAGTCGTCAGTAGATGTCCAGCAGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................GGCTCCTTTT---GGCGGACT......................................................................................................................18190.428800000
...................................................................................................................................................................................................................................................................................................TATCATTGAGGCTCCTTTT---GGCGGACT......................................................................................................................2790.333300000
....................................................................................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTT---GGCGGACTCG....................................................................................................................2890.333300000
.................................................................................................................................................................................................................................................................................................GTTATCATTGAGGCTCCTTTT---GGC...........................................................................................................................2490.222200000
...........................................................................................................................................................................................................................................................................................................AGGCTCCTTTT---GGCGGACT......................................................................................................................19160.193300000
........................................................AGCAGAATTCTACGGACCA............................................................................................................................................................................................................................................................................................................................................................................19190.163300000
................................................AAGTAAACAGCAGAATTCTACGGAC..............................................................................................................................................................................................................................................................................................................................................................................25190.163300000
.......................................................................................................................................................................................................................................................................................................ATTGAGGCTCCTTTT---GGCGGACT......................................................................................................................23160.132200000
..........................................................................................................................................................................................................................................................................................................GAGGCTCCTTTT---GGCGGACT......................................................................................................................20160.132200000
.....................................................................GGACCAATACATATTTTTCGAACT..........................................................................................................................................................................................................................................................................................................................................................24160.132200000
.................................................................CTACGGACCAATACATATTTTTC...............................................................................................................................................................................................................................................................................................................................................................23170.122200000
....................................................................................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTT---GGCGGACT......................................................................................................................2690.111100000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGTCAGTAGATGTCC.......20180.112200000
.......................................................CAGCAGAATTCTACGGACCAAT..........................................................................................................................................................................................................................................................................................................................................................................22190.112200000
.........................................................GCAGAATTCTACGGACCA............................................................................................................................................................................................................................................................................................................................................................................18190.112200000
.........................................................GCAGAATTCTACGGACCAATACAT......................................................................................................................................................................................................................................................................................................................................................................24190.112200000
..................................................GTAAACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................24190.112200000
....................................................AAACAGCAGAATTCTACGGACCAA...........................................................................................................................................................................................................................................................................................................................................................................24190.112200000
.....................................................AACAGCAGAATTCTACGGACCAAT..........................................................................................................................................................................................................................................................................................................................................................................24190.112200000
.....................................................AACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................21190.112200000
.............................................................................................................................................................................................................................................................................................TTATGTTATCATTGAGGC........................................................................................................................................18100.101100000
...................................................................................................................................................................................................................................................................................................TATCATTGAGGCTCCTTTT---GGCGGACC......................................................................................................................27110.091100000
....................................................................................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTT---GGCGGACG......................................................................................................................26110.091100000
......................................................................................................................................................................................................................................................................................................CATTGAGGCTCCTTTT---GGCGGACTC.....................................................................................................................25150.071100000
.......................................................................................................................................................................................................................................................................................................ATTGAGGCTCCTTTT---GGCGGACTC.....................................................................................................................24160.061100000
...........................................................................................................................................................................................................................................TAATTTCTGGTCT-GTCATTGGGAT...................................................................................................................................................................................24160.061100000
..............................................................................................................................................................................................................................................TTTCTGGTCT-GTCATTGGG.....................................................................................................................................................................................19160.061100000
............................................................................................................................................................................................................................................AATTTCTGGTCT-GTCATTGGGA....................................................................................................................................................................................22160.061001000
..........................................................................................................................................................................................................................................TTAATTTCTGGTCT-GTCATTGGGAT...................................................................................................................................................................................25160.061100000
............................................................................................................................................................................................................................................AATTTCTGGTCT-GTCATTGGGAT...................................................................................................................................................................................23160.061100000
..................................................................TACGGACCAATACATATTTTTC...............................................................................................................................................................................................................................................................................................................................................................22170.061100000
..................................................................................................................................................................................................................................................................................................................................................................CTC-----CAAG-------------------------------------CGAACAAAAGCAGTCGTCAGT...............28170.061100000
..................................................................................................................................................................................................................................................................................................................................................................CTC-----CAAG-------------------------------------CGAACAAAAGCAGTCGTCAGTA..............29170.061100000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGTCAGTAGATGTC........19180.061100000
.......................................................................................................................................................................................................................................................................................................ATTGAGGCTCCTTTT---GGCGGA........................................................................................................................21180.061010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAGTCGTCAGTAGATGTC........24180.061100000
..........................................................................................................................................................................................................................................................................................................GAGGCTCCTTTT---GGCGGACG......................................................................................................................20180.061100000
...........................................................................................................................................................................................................................................................................................................AGGCTCCTTTT---GGCGGACC......................................................................................................................19180.061100000
..........................................................................................................................................................................................................................................................................................................GAGGCTCCTTTT---GGCGGACC......................................................................................................................20180.061100000
.................................................AGTAAACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................25190.051100000
..................................................GTAAACAGCAGAATTCTACGGACCA............................................................................................................................................................................................................................................................................................................................................................................25190.051100000
........................................................AGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................18190.051100000
.................................................AGTAAACAGCAGAATTCTACGGAC..............................................................................................................................................................................................................................................................................................................................................................................24190.051100000
..............................................................ATTCTACGGACCAATACAT......................................................................................................................................................................................................................................................................................................................................................................19190.051001000
......................................................ACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................20190.051100000
.....................................................AACAGCAGAATTCTACGGACCA............................................................................................................................................................................................................................................................................................................................................................................22190.051100000
.................................................................................................................................................................................................................................................................................................................CTTTT---GGCGGACTCGATA.................................................................................................................18190.051100000
.................................ATATGTTCACTCTGGAAGTA..................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.................................ATATGTTCACTCTGGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
..................................................................TACGGACCAATACATATT...................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.................................ATATGTTCACTCTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.................................................................CTACGGACCAATACATATTTTT................................................................................................................................................................................................................................................................................................................................................................22200.051100000
dp5
TCTCGAGACTCTCCTATTCCGTGTACATCTGGCATATGTTCACTCTGGAAGTAAACAGCAGAATTCTACGGACCAATACATATTTTTCGAACTACAATTTGGTAAGTTTTGTTTCAGATAGTTGATAGAA------------A-----CTAGTGGA----------------TTATA-ACAAAT-GT---AT----------AAT-ATT--------TTATGCTTTGCAGATGCTTAATTTCTGGTCT-GTCATTGGGATCACTGTTTTGATGTCGTA-TGTGCTTTATATTATCATTGAGGCTCCTTTT---GGCGGACTCGATAATCTTCTACGAACCCGAC-AGCCACGAGCTC-----CAAG-------------------------------------CGAACAAAAGCAGTCGTCAGTAGATGTCCAGCAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................GGCATATGTTCACTCTGGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................2222.0040400000000
..............................................................................................................................................................................................................................................................................................................CTCCTTTT---GGCGGACTCGAT..................................................................................................................2022.0040220000000
........................................CACTCTGGAAGTAAACAGC............................................................................................................................................................................................................................................................................................................................................................................................1922.0040310000000
.........................................................................................................................................................................................................................................................................................................TGAGGCTCCTTTT---GGCGGACT......................................................................................................................2122.0040310000000
.............................................................................................................................................................................................................................................................................................................GCTCCTTTT---GGCGGACTCGAT..................................................................................................................2121.5030300000000
.................................ATATGTTCACTCTGGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................1921.5030300000000
.......................................................................................................................................................................................................................................................................................................ATTGAGGCTCCTTTT---GGCGGACTC.....................................................................................................................2421.5030300000000
.................................ATATGTTCACTCTGGAAGTA..................................................................................................................................................................................................................................................................................................................................................................................................2021.5030300000000
.....................................................AACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................2131.3340400000000
......................GTACATCTGGCATATGTTCACTCTGGA......................................................................................................................................................................................................................................................................................................................................................................................................2731.3340000000004
.....................................................AACAGCAGAATTCTACGGACCA............................................................................................................................................................................................................................................................................................................................................................................2231.3341300000000
......................GTACATCTGGCATATGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................1931.3340400000000
........................................CACTCTGGAAGTAAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................2021.0020200000000
............................................................................................................................................................................................................................................................................................................GGCTCCTTTT---GGCGGACT......................................................................................................................1821.0021100000000
...........................................................................................................................................................................................................................................................................................................................................CTACGAACCCGAC-AGCCACGA......................................................................................2121.0020110000000
........................................................................................................................................................................................................................................................................GTTTTGATGTCGTA-TGTGCT..........................................................................................................................................................2021.0020200000000
..................................................GTAAACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................2421.0021010000000
.................................................................................................................................................................................................................................................................................................................................CGATAATCTTCTACGAACCC..................................................................................................2021.0020110000000
.....................................................................................................................................................................................................................................................................................................................................................GAC-AGCCACGAGCTC-----CAAG-------------------------------------C...................................2021.0020110000000
......................................................................................................................................................................................................................................................CT-GTCATTGGGATCACTGT.............................................................................................................................................................................1921.0020200000000
...............................................................................................................................................................................................................................................................................................ATATTATCATTGAGGCTCCTTTT---GGC...........................................................................................................................2621.0020100100000
.................................................................................................................................................................................................................................................................................................................................CGATAATCTTCTACGAACCCGA................................................................................................2221.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGTCAGTAGATGTCCAGC....2311.0010010000000
....................................................................................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTT---GGC...........................................................................................................................2130.6720200000000
..........................ATCTGGCATATGTTCACTCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................2230.6720100100000
............................................................................................................................................................................................................................................................ATTGGGATCACTGTTTTGAT.......................................................................................................................................................................2020.5010100000000
...........................................................................................................................................................................................................................................................................................................................................CTACGAACCCGAC-AGCCACGAGC....................................................................................2320.5010010000000
..............................................................................................................................................................................................................................................................................................................CTCCTTTT---GGCGGACTCGATA.................................................................................................................2120.5010100000000
.............................................................................................................................................................................................................................................................................GATGTCGTA-TGTGCTTTATATT...................................................................................................................................................2220.5010100000000
................................CATATGTTCACTCTGGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.......................................................................................................................................................................................................................................................T-GTCATTGGGATCACTGTTTTG.........................................................................................................................................................................2220.5010100000000
..................................................GTAAACAGCAGAATTCTAC..................................................................................................................................................................................................................................................................................................................................................................................1920.5010010000000
...............................................................................................................................................................................................................................................................................................................TCCTTTT---GGCGGACTCGATAATCTTCTAC........................................................................................................2920.5010100000000
...............................................................................................................................................................................................................................................................................................................................................GAACCCGAC-AGCCACGAGCTC-----CAAG-------------------------------------C...................................2620.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................AGCCACGAGCTC-----CAAG-------------------------------------CGAACAAAAGC.........................2720.5010100000000
....................................................................................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTT---GGCGGACTC.....................................................................................................................2720.5010100000000
..................................................................................................................................................................................................................................................................ATCACTGTTTTGATGTCGT..................................................................................................................................................................1920.5010100000000
.......................................................................................................................................................................................................................................................................................................ATTGAGGCTCCTTTT---GGCGGA........................................................................................................................2120.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................ACGAGCTC-----CAAG-------------------------------------CGAACAAAAGCAGT......................2620.5010100000000
............................................................................................................................................................................................................................................................................................................................................................CACGAGCTC-----CAAG-------------------------------------CGAACAAA............................2120.5010100000000
.................................................................................................................................................................................................................................................................................................................................CGATAATCTTCTACGAACCCGAC-A.............................................................................................2420.5010100000000
......................................................................................................................................................................................................................................ATGCTTAATTTCTGGTCT-GTC...........................................................................................................................................................................................2120.5010010000000
............................................................................................................................................................................................................................................................ATTGGGATCACTGTTTTGATGTCGT..................................................................................................................................................................2520.5010100000000
............................................................................................................................................................................................................................................................................................................................................TACGAACCCGAC-AGCCACGAG.....................................................................................2120.5010100000000
..........................................................................................................................................................................................................................................................................................................GAGGCTCCTTTT---GGCGGACTCG....................................................................................................................2220.5010100000000
......................................................................................................................................................................................................................................................................................................................................ATCTTCTACGAACCCGAC-AGC...........................................................................................2120.5010100000000
........................................................................................................................................................................................................................................................................................GTGCTTTATATTATCATTGAGG.........................................................................................................................................2220.5010010000000
.........................................................................................................................................................................................................................................................GTCATTGGGATCACTGTTT...........................................................................................................................................................................1920.5010000001000
..........................................................................................................................................................................................................................................................................................................GAGGCTCCTTTT---GGCGGACT......................................................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................CT-GTCATTGGGATCACTGTTTT..........................................................................................................................................................................2220.5010100000000
.................................................................................................................................................................................................................................................................................................................................CGATAATCTTCTACGAACCCGAC-AGC...........................................................................................2620.5010100000000
................................................................................................................................................................................................................................................................................................................CCTTTT---GGCGGACTCGATAATCTTCTA.........................................................................................................2720.5010010000000
.................................................................................................................................................................................................................................................................................................................................CGATAATCTTCTACGAACCCGAC-..............................................................................................2320.5010010000000
..................................................GTAAACAGCAGAATTCTACG.................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
..............................................GGAAGTAAACAGCAGAATTCTAC..................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000000
...........................................................................................................................................................................................................................................................CATTGGGATCACTGTTTTGATGTG....................................................................................................................................................................2420.5010100000000
..........................................................................................................................................................................................................................................................................................................GAGGCTCCTTTT---GGCGGA........................................................................................................................1820.5010000100000
.........................................................................................................................................................................................................................................................................................................................................................AGCCACGAGCTC-----CAAG-------------------------------------CGAACAAAA...........................2520.5010100000000
..............................................................................................................................................................................................................................................................................................................CTCCTTTT---GGCGGACTCGA...................................................................................................................1920.5010100000000
.................................................................................................................................................................................................................................................................................................ATTATCATTGAGGCTCCTTTT---GGCGGA........................................................................................................................2720.5010100000000
.....................................................................................................................................................................................................................................................................................................................................AATCTTCTACGAACCCGAC-A.............................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................................................................CATTGAGGCTCCTTTT---GGCGGACTC.....................................................................................................................2520.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................AGCCACGAGCTC-----CAAG-------------------------------------CGAACAAAAG..........................2620.5010010000000
...................................................TAAACAGCAGAATTCTAC..................................................................................................................................................................................................................................................................................................................................................................................1820.5010000100000
................................................................................................................................................................................................................................................................................................................CCTTTT---GGCGGACTCGATAATCTT............................................................................................................2420.5010100000000
...........................................................................................................................................................................................................................................................................................................AGGCTCCTTTT---GGCGGACTCGAT..................................................................................................................2320.5010100000000
............................................................................................................................................................................................................................................................................................TTTATATTATCATTGAGGCTCCTTTT---GGC...........................................................................................................................2920.5010010000000
..........................................................................................................................................................................................................................................................TCATTGGGATCACTGTTTTGATGTCGTA-................................................................................................................................................................2820.5010100000000
................................................................................................................................................................................................................................................................................................TATTATCATTGAGGCTCCTTTT---GGC...........................................................................................................................2520.5010010000000
...............................................................................................................................................................................................................................................................................................................................................................GAGCTC-----CAAG-------------------------------------CGAACAAAAGCA........................2220.5010100000000
..................................................................................................................................................................................................................................................................ATCACTGTTTTGATGTCGTA-TGTGCT..........................................................................................................................................................2620.5010000100000
...................................................................................................................................................................................................................................................................................................................TTT---GGCGGACTCGATAATCTT............................................................................................................2120.5010100000000
........................................................................................................................................................................................................................................................................................................................................CTTCTACGAACCCGAC-AGCCAC........................................................................................2220.5010100000000
...............................................................................................................................................................................................................................................................................................ATATTATCATTGAGGCTCCTTT..................................................................................................................................2220.5010100000000
............................................................................................................................................................................................................................................................................................TTTATATTATCATTGAGGCTCCT....................................................................................................................................2320.5010010000000
...................................................TAAACAGCAGAATTCTACG.................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
........................................................................................................................................................................................................................................................................GTTTTGATGTCGTA-TGTGCTT.........................................................................................................................................................2120.5010000100000
................................................................................................................................................................................................................................................................................................................................................AACCCGAC-AGCCACGAGCTC-----CAAG-------------------------------------C...................................2520.5010100000000
......................................................................................................................................................................................................................................................CT-GTCATTGGGATCACTGTTTTGATGT.....................................................................................................................................................................2720.5010100000000
.........................................ACTCTGGAAGTAAACAGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
.......................................................................................................................................................................................................................................................................................................ATTGAGGCTCCTTTT---GGCGGACT......................................................................................................................2320.5010100000000
......................................................................................................................................................................................................................................................................................................................................ATCTTCTACGAACCCGAC-AGCCAC........................................................................................2420.5010100000000
...............................................................................................................................................................................................................................................................................................................................................GAACCCGAC-AGCCACGAGG....................................................................................1920.5010000100000
.....................................................................................................................................................................................................................................................TCT-GTCATTGGGATCACTGTTTT..........................................................................................................................................................................2320.5010100000000
...............................................................................................................................................................................................................................................................................................................................................GAACCCGAC-AGCCACGAGCTC-----CA...........................................................................2320.5010000100000
............................................................................................................................................................................................................................................................ATTGGGATCACTGTTTTGATGT.....................................................................................................................................................................2220.5010000001000
...................................................................................................................................................................................................................................................................................................................................ATAATCTTCTACGAACCCGAC-..............................................................................................2120.5010100000000
..................................................GTAAACAGCAGAATTCTACGG................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...................................................................................................................................................................................................................................................................................................TATCATTGAGGCTCCTTTT---GGCGGACT......................................................................................................................2720.5010100000000
.....................................GTTCACTCTGGAAGTAAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
..................................................................................................................................................................................................................................................................................................................................GATAATCTTCTACGAACCCGAC-A.............................................................................................2320.5010100000000
.........................................................................................................................................................................................................................................................................................................TGAGGCTCCTTTT---GGCGGACTCG....................................................................................................................2320.5010100000000
...............................................................................................................................................................................................................................................................GGGATCACTGTTTTGATGTC....................................................................................................................................................................2020.5010100000000
.............................................................................................................................................................................................................................................................................................................GCTCCTTTT---GGCGGACTC.....................................................................................................................1820.5010100000000
...........................................................................................................................................................................................................................................................................TTGATGTCGTA-TGTGCTTTATATTATC................................................................................................................................................2720.5010000001000
..........................................................................................................................................................................................................................................................................................................................GCGGACTCGATAATCTTCTACGAACC...................................................................................................2620.5010100000000
...................................................................................................................................................................................................................................................................TCACTGTTTTGATGTCGTA-TGT.............................................................................................................................................................2220.5010100000000
......................................................................................................................................................................................................................................................CT-GTCATTGGGATCACTGTTTTGAT.......................................................................................................................................................................2520.5010100000000
.....................................................................................................................................................................................................................................................................................................................................AATCTTCTACGAACCCGAC-AGCC..........................................................................................2320.5010100000000
........................................................................................................................................................................................................................................................................................................TTGAGGCTCCTTTT---GGCGGA........................................................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................................................................................................ATCTTCTACGAACCCGAC-AG............................................................................................2020.5010100000000
....................................................................................................................................................................................................................................................................................................................................................CGAC-AGCCACGAGCTC-----CAAG-------------------------------------C...................................2120.5010100000000
................................CATATGTTCACTCTGGAAGTA..................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...............................................................................................................................................................................................................................................................................TGTCGTA-TGTGCTTTATATTATCATTGA...........................................................................................................................................2820.5010100000000
............................................................................................................................................................................................................................................................................................................GGCTCCTTTT---GGCGGACTCGA...................................................................................................................2120.5010100000000
............................................................................................................................................................................................................................................................................................................GGCTCCTTTT---GGCGGACTCGATAATCTT............................................................................................................2820.5010100000000
....................................................................................................................................................................................................................................................................CACTGTTTTGATGTCGTA-TGT.............................................................................................................................................................2120.5010000100000
.....................................................................................................................................................................................................................................................................................................................................AATCTTCTACGAACCCGAC-AGCCACGA......................................................................................2720.5010100000000
..........................................................................................................................................................................................................................................................................TTTGATGTCGTA-TGTGCTTTAT......................................................................................................................................................2220.5010100000000
............................................................................................................................................................................................................................................AATTTCTGGTCT-GTCATTGGGATCACC...............................................................................................................................................................................2720.5010010000000
...............................................................................................................................................................................................................................................................................................................................................GAACCCGAC-AGCCACGAGCT...................................................................................2020.5010100000000
..................................................GTAAACAGCAGAATTCTACGGACCA............................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
...............................................................................................................................................................................................................................................................................................................................................GAACCCGAC-AGCCACGAGCTC-----CAAG-------------------------------------CG..................................2720.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................GAC-AGCCACGAGCTC-----CAAG-------------------------------------....................................1920.5010100000000
......................................................................................................................................................................................................................................................................CTGTTTTGATGTCGTA-TGTG............................................................................................................................................................2020.5010000100000
............................................................................................................................................................................................................................................................................................................................................TACGAACCCGAC-AGCCACGAGCTC-----.............................................................................2420.5010100000000
..........................................................................................................................................................................................................................................................................................................................................................GCCACGAGCTC-----CAAG-------------------------------------CGAACAAAAG..........................2520.5010100000000
....................................................................................................................................................................................................................................................................CACTGTTTTGATGTCGTA-TGTGCTTT........................................................................................................................................................2620.5010010000000
...............................................................................................................................................................................................................................................................................................................TCCTTTT---GGCGGACTCGAT..................................................................................................................1920.5010100000000
.............................................................................................................................................................................................................................................................................................................................GACTCGATAATCTTCTACGAACCC..................................................................................................2420.5010100000000
............................................................................................................................................................................................................................................................................................................................GGACTCGATAATCTTCTACGAACCC..................................................................................................2520.5010010000000
...............................................................................................................................................................................................................................................................................................................................CTCGATAATCTTCTACGAACCC..................................................................................................2220.5010100000000
.................................................................................................................................................................................................................................................................................................ATTATCATTGAGGCTCCTTTT---GGCG..........................................................................................................................2520.5010000100000
............................................................GAATTCTACGGACCAATACATATTTT.................................................................................................................................................................................................................................................................................................................................................................2630.3310100000000
.....................................................AACAGCAGAATTCTACGGACCAATACAT......................................................................................................................................................................................................................................................................................................................................................................2830.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................CTC-----CAAG-------------------------------------CGAACAAAAGCAGT......................2130.3310100000000
.........................CATCTGGCATATGTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................1930.3310100000000
....................................................................................................................................................................................................................................................................................................ATCATTGAGGCTCCTTTT---GGCG..........................................................................................................................2230.3310010000000
.....................................................AACAGCAGAATTCTACGG................................................................................................................................................................................................................................................................................................................................................................................1830.3310100000000
....................................................AAACAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
................................................................................................................................................................................................................................................TCTGGTCT-GTCATTGGGAT...................................................................................................................................................................................1930.3310000100000
..............................GGCATATGTTCACTCTGGA......................................................................................................................................................................................................................................................................................................................................................................................................1930.3310100000000
..........................ATCTGGCATATGTTCACTCTG........................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000000
......................................................................................................................................................................................................................................................................................................CATTGAGGCTCCTTTT---GGC...........................................................................................................................1930.3310100000000
..............................................................ATTCTACGGACCAATACAT......................................................................................................................................................................................................................................................................................................................................................................1930.3310100000000
............................CTGGCATATGTTCACTCTGGA......................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000001
..................................................................................................................................................................................................................................................................................................................................................................CTC-----CAAG-------------------------------------CGAACAAAAGC.........................1830.3310100000000
.................................................................................................................................................................................................................................................................................................................................................................GCTC-----CAAG-------------------------------------CGAACAAAAGC.........................1930.3310100000000
...............................GCATATGTTCACTCTGGA......................................................................................................................................................................................................................................................................................................................................................................................................1830.3310100000000
...................................................................................................................................................................................................................................................................................................TATCATTGAGGCTCCTTTT---GGC...........................................................................................................................2230.3310100000000
..........................ATCTGGCATATGTTCACTCTGGA......................................................................................................................................................................................................................................................................................................................................................................................................2330.3310100000000
....................................................AAACAGCAGAATTCTACGGA...............................................................................................................................................................................................................................................................................................................................................................................2030.3310010000000
..............................................................ATTCTACGGACCAATACATATTTTTC...............................................................................................................................................................................................................................................................................................................................................................2630.3310100000000
......................................................................................................................................................................................................................................................................................................CATTGAGGCTCCTTTT---GGCG..........................................................................................................................2030.3310100000000
................................................................................................................................................................................................................................................TCTGGTCT-GTCATTGGGATCACT...............................................................................................................................................................................2330.3310100000000
.......................TACATCTGGCATATGTTCACTCTGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................2730.3310100000000
................................................................................................................................................................................................................................................................................................................................................................AGCTC-----CAAG-------------------------------------CGAACAAAAGC.........................2030.3310100000000
..........................ATCTGGCATATGTTCACTCT.........................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
......................GTACATCTGGCATATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000100000
.......................................................CAGCAGAATTCTACGGACC.............................................................................................................................................................................................................................................................................................................................................................................1930.3310010000000
.............CTATTCCGTGTACATCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
........CTCTCCTATTCCGTGTACATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510100000000
..............TATTCCGTGTACATCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510100000000
...........TCCTATTCCGTGTACATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
......GACTCTCCTATTCCGTGTACATCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2740.2510100000000
droWil2
TCTCACGGCTCTCCTACTCCGTCTATATCTGGCACATCTTCCTTCTGGAAGTTCACCACATGCTGTTACGTTCACATACATACTTTTCGGACTATCAAATGGTAAGCTGGATGCACATT--------------------------------CCTAA---------A-----AGAGAT-TT------------TT----------A-ACT--------AATTTACTGACAGATGTTGAATTTCTGGTCT-GACTTTGGATTTACCCTGTTTATGTCCTA-TGTTATGTACATTGTGATTGAGGCACCTTTGGTTGGTGGATT----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................ATTTACCCTGTTTATGTCCT..................................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................................................................................................ATTGTGATTGAGGCACCTTTGGTT..............................................................................................................................2411.00100010
droVir3
TGTCGAAGCTCTCCTACGGCGCCTACATCTGGCACATACTCATCGAGATTCTCAATGGCGGCATCACGCGCACCAGCACCTACTTCAGCGACTATCAAGTGGTGCGTTATCTTACGCATCTGTT------------GCG-----CCTTCTGCCATATATCTATAAT-------------T----------GT----------GTT-TTT--------TTTTTTATTGCAGATGTTGCGCTTCTGGCAT-GACTTTGGCTTTACCATTTTGTTGGCCTA-TTTCATGTTCCTCTTGGTCGAGGCACCTTTC---GGCGGCCTGGAGATGTTATTGTTTCCCACTCGCGCGC---CCAG----------------------AAGCCAGCCTG---------CTCC-----------------------AGCTGTCAAGAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................ATGTTCCTCTTGGTCGAG..........................................................................................................................................1812.002200000000000000000000000000000000000000000000000000000000000000
..TCGAAGCTCTCCTACGGCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
........................................CATCGAGATTCTCAATGGCGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GTTGCGCTTCTGGCAT-GACTTTG.......................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GGCACCTTTC---GGCGGCCTGGA...................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................ACATACTCATCGAGATTCTCAATGGCGGC.........................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TGTCGAGGCTCTCCTATTCCGCCTACGTGTGGCACATATTCATCCAGGAAATCAATAGCAGACGCTATCAGACCAACACCTTCTTCTCCAATTACGAAATGGTATTTAACATCTGCT-TGAT--------------GTGAG--ACC---TTAGCTA----------------AACTTT-CTT----------CT----------T-CTT--------CTTATTTTGATAGATGCTCAAATTCTGGGCGGGACTTGGGCTTTACTCTACTTACTGCCTACCCTGATGTACATCATCATTGAGGCACCGCTG---GGCGACTTGGAGGGCCTGCTACTACCCAAAC-CGTAGACCC-------------------------------------------------------------------AGTCCCCAAGCCAGCGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGTCAAAACTCTCGTTCTGCGTTTATATCTGGCACCTTTTCATTGTGGACTTCAACGCCGGCATTGGTCGCACCAACACCTATTTCAGCGATTATCAAGTGGTAAGCATACATCATATG-------------T--CAGCACAT-----CTTGCATA--TCT-------------ATAG-TA-------TA--TA----------C-TTTGTTTATATGGACACCTTTAAGATGTTGCGCTTTTGGCAT-GACTTTGGCCTTACGCTTCTATTGGCCTA-CCTTATGTATATTCTGGTCGAGGCACCTTTC---GCTGCCCTGGAGATGCTATTGCTGCCAGCTC-GGAGGCCACCTG------------------------------------------CTCC-----------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................TATTTCAGCGATTATCAAGT...................................................................................................................................................................................................................................................................................................................................................2020.50110
....................................................................................................................................................................................................................................................GCAT-GACTTTGGCCTTACG...............................................................................................................................................................................1920.50110
..............................................................................................................................................................................................................................................................................TTGGCCTA-CCTTATGTATA.....................................................................................................................................................1920.50110
....................................................CAACGCCGGCATTGGTCGCACCAACA.........................................................................................................................................................................................................................................................................................................................................................................2620.50110
....................................................................................................................................................................................................................................................GCAT-GACTTTGGCCTTACGCT.............................................................................................................................................................................2120.50110
...........................................................................................................................................................................................................................................................................................ATGTATATTCTGGTCGAGG.........................................................................................................................................1920.50101
................................................................................TATTTCAGCGATTATCAAGTGA.................................................................................................................................................................................................................................................................................................................................................2220.50110
droAna3
TCTCAAGGCTCTCGTATTCGGTCTACATCTGGCACATGTTCATCCAGGAGGTTAACAGCAGGAATGTACGGACAAGTACCTACTTCTCGGGATACACTGTGGTAAGATACATATAATA--------------ATGA-----AT-----TTTGATTG-----------------------CAAAAG--ATT--TC----------A-ACT--------TTCTTATCTATAGATGAAAAATTTCTGGTCA-GACTTTGGCATAAGCTTGGTTATGTCCTA-TGCATTATTTCTTATAATTGAGGCTCCAGTC---GGTGGACTAGATGCCCTCTGGAGACCTCGTA-CAAACACG---A-AGCCCAAT-------------------------------------CAGCCAAT-------------ATTGACATCAGTGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................AATTGAGGCTCCAGTC---GGT...........................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................GTA-CAAACACG---A-AGCCCAAT-------------------------------------CAGC................................2411.001010000
................................................AGGTTAACAGCAGGAATGTACGGA...............................................................................................................................................................................................................................................................................................................................................................................2411.001000010
droBip1
TCTCCAGGATCTCTTACTCTGCCTACATTTGGCATGTATTTGTCCAGGAACTCAATAACAGAAATACCAGAACCAATTCTTATTTCTCCGATTACCAAGTGGTAGGTTTTTATCTTTCC--TTAAAAATG------------A-----CTA----------------ACGTGCATTAC-TTA--------A-TA----------A-AAC--------CTTATATTCACAGATGCTAAAGTTCTGGTCA-GACATGGGTATGATCCTTACCATGGCTAT-TTTCTTTTACCTAATCATAGAAGCACCTTTT---AGTGGAGTGGAGTACTTCCTCAGACCAGTGA-AAAAATCTGTCG--------------------------------------------------------------TCAG--------------TASizeHit CountTotal NormTotal
No Reads
droKik1
TCTCCAGGCTCTCCTACTCAATGTACATCTGGCACATGTTCATCCAGGAGGTGAACAGCAGGAATGTCAGGACGAACTCTTATTTCTCGAACTACACTGCGGTAAATTTAATTTGTATT-------------TCAC-------AGC--------------------------TTGGC-TTCAAT-TT---AA----------ATT-GAT--------CTACTTCTTGCAGATGGAACACTTTTGGTTC-GACTTGGGCTTTACTGTGCTGATGTCTTT-TCTTTTGTACATTTTAATTGAGGCCCCTCTG---TGCGGATTTGACAGCCTACTTCGGCCTCGCA-GGATCTCACCAGCAG-----T------------TGAAAGGCCCC-AGCTAATTT---------------------C---------------AGASizeHit CountTotal NormTotal
No Reads
droFic1
TCTCTAGGCTCTCTTACTCCGTCTTCCTTTTTCACTTGTTCATTGAGGAGATGAACGGCAGAAATGGAAGGACGAATGGTTACTTCTCAGACTACACAATTGTAGGTTTTAAAAAGCAACT--AG---AAGTTTGC------------------------------AGTTCAATTTTTAATA----------TT----------A-ACT--------CTTTTTATTATAGATGCGCAACTTCTGGACA-ACTATGGGATTCACATGCTTGATGGCTTA-CGTAATGCACATCCTCATTGAGGCTCCTTTC---GGTGGACTTGATCTCTTCTTGCGACCGAAAC-CCAAGAGCCCTG------------------------------------------CCTTTGTCAAACAAAAATCCCAAGTAGA----CAACGGAASizeHit CountTotal NormTotal
No Reads
droEle1
TCTCCAGGCTCTCCTATTCCGTCTACATTTGGCACATGTTCTGCCAGGAGCTGAACGTGAGAAGTACTAGGACCAATTCGTATTTCTCGGACTACACAATTGTGGGTTTCAACAAGCTTAA--------------------AT-----CTGTTTGG----------------TAATA------T---AT-TT----------CAT-ATC--------TCCTACCTTGCAGATGCTCAACTTCTGGTCG-ACCTTTGGATTCACCGTGCTGTTTGCCTA-TGTAATGTACTTGCTAGTGGAGGCACCTTTT---GGTGGGCTTGATCTTTTACTGGGACCCAAAG-GGAAAAGCCCTC------------------------------------------CTCCCGTTAAACAGAAATCACAGATAGATG-ATAACGGGTSizeHit CountTotal NormTotal
No Reads
droRho1
TATCGAGGCTCTCCTATTCCGTCTTCATATGGCACCAGTTCTTCGTAGAGGCGAACGTCAGAAATACAAGAACAAATACCTACTTCTCGGACTACAGAATTGTAGGTTTCAACAAATTTAAT-----CA---TTGC--CGG--AAC--------------------------TTTTACAT----------AT----------TTT-ATC--------TATTATATTGCAGATGCTCAATATCTGGTCA-ACATTTGGATGCACCGTGCTGTTTTCTTA-TGTGATGTATCTACTCATCGAAGCACCTTTT---GGAGGTCTTGATCATTTCCTGAAGCCAAAAA-GAAATAACACTC------------------------------------------CTGTAGTCA---------------------AACAAAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
TTTCAAGACTCTCCTACTCCATGTACATCTGGCACATGTTCGTTCAAGAGGTGAACAGCCGCAGTGTCAGGACAAACACATATTTCTCCAACTACTCCATGGTATGTTATATTTTAAATAAT--------------AGGCAAA-----CTAGTTTA----------------TTCTAG-CA-------TT--TC----------C-CTT--------CTTTTTTTTTCAGATGAAACATTTCTGGCAT-GATTTTGGATTTACTGCACTGATGGCTTA-CCTGTTGTACCTCATCATCGAAGCTCCTTTG---GGTGGATTTGATAGTCTTCTAAGGCCTCAG------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCTCGAGACTCTCGTATTCCGTCTACATCTGGCACATCTTTATCCAAGAAATTAACTCCAAGAGTATAAGAACAATCTCGTATTTCTCGGACTACCAAGTTGTAAGTACCTAAACTA---------------TCGCACTTAAA-----CTTCTTGG----------------TTCTA-ATA--T--------------------A-TAT--------AATCGCCTCACAGATGCTTAGATTCTGGACA-ACCTTTGGATTCACCGTGCTGCTTGCTTT-CTTCATGTATCTCATTGTTGAGGCCCCCATT---GGCGGACTGGACCTTTTTATACGACCTCAGA-TAAAGGCATCTGCTA-----G------------TAGCAAGTCAA-AGGAAAATT---------------------CAAACGAAGTGCAGCAGAASizeHit CountTotal NormTotal
No Reads
droEug1
TCTCTAGGCTGTCTTATTCCGTGTTTATTTGGCATATGTTCATCCAGGAGGTGAATGCCAGAAGTATGAGAACGAATTCGTACTTCTCCGATTACAGAATTGTAAGTTTTAAAAAGTT----------------GC------------------------------CGTATTTCCTTTACTA----------TT----------AAACT--------ATCTCTTTTGCAGATGCTCAACTTCTGGTCA-ACCTTTGGTATCACCGTGCTTTTTGCCTA-TGTAATGCACTTGCTCATTGAGGCACCTTTC---GGTGGAATTGACCATTTCCTGCGACCGCGAC-AAAATAGTCCTC------------------------------------------CTATTGTTGAAAAGAAATCACAGATAGAT----------GSizeHit CountTotal NormTotal
No Reads
dm3
TCTCCAGGCTTTCGTATTCTGTTTTTATATGGCACATGTTCTTCATGGAGATGAACGCACGGAGTACCAGGACTAGCACATACTTCTCGGATTACGGAATGGTAGGATTATTAAATAATAAT----------------------GCTTTTGC--------------TG-----------T-------ATC--TC----------A-AAT--------ATCAAATTTTCAGATGCTTAACTTCTGGTCG-ACCCTAGGGTTCACCTTGCTGTTTTCCTA-TGCAATGCATCTGCTCATTGAGGCACCAATT---GGCGGACTTGACATTTTCCTAAGGCCAAAGG-GAAAGATCTCTC------------------------------------------CTACCGAAAAACAGACA---------------------TCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................GGAGATGAACGCACGGAGTAC....................................................................................................................................................................................................................................................................................................................................................................................21112.00120000000000000000000000000000000000000000000000000000000006510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GGAGATGAACGCACGGAGTACC...................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GGAGATGAACGCACGGAG.......................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACATACTTCTCGGATTACGGA.....................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000
..............................................GGAGATGAACGCACGGAGT......................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GGAGATGAACGCACGGAGTA.....................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCACATACTTCTCGGATTACGGA.....................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................ATACTTCTCGGATTACGGA.....................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................GGAGTACCAGGACTAGCACA.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............................................................AGTACCAGGACTAGCACATACTT..................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................ATACTTCTCGGATTACGG......................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................CACGGAGTACCAGGACTAGCACATAC....................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................AGATGAACGCACGGAGTACCAGGA...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATGGAGATGAACGCACGGAGTACCAG.................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droSim2
TCTCGAGACTATCGTACTCCGTCTACATCTGGCACGTTTTTATGCAGGAGCTGAACGCCCGAAGAACTAGGACCAACGCGTACTATTCGGACTACAACATGGTATGTTTTTTGCTTA--------CGAAG---------AC--------TACT-------------AATATAACTACTACTA----------AT----------C-ATA--------TATATTTCCGCAGATGCTCAAATTCTGGTCA-GATATTGGATTCACCTTCTTGCTTTCCTA-TCTGCTCTACCTGATCATCGAAGCACCTTTC---AATGGACTTGATATTTTCATCCGGCCTCAAA-GGAAGGCACCTCCTA-----C------------CATGAAAACCC-AGACAAACT---------------------CAGAACCTACGCAGGAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................AAATTCTGGTCA-GATATTGGAT....................................................................................................................................................................................2213.00300300000000000000
..........................................................................................................................................................................................................................................................................................................................ATGGACTTGATATTTTCATCC........................................................................................................2113.00300300000000000000
..........................................................................................................................................................................................................................................................................................................GAAGCACCTTTC---AATGGACTTGAT..................................................................................................................2412.00201100000000000000
....................................................................AGGACCAACGCGTACTATTCGGA............................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.........................................................................................................................................................................................................................................................................................................CGAAGCACCTTTC---AATGGACTTGAT..................................................................................................................2512.00200200000000000000
.............................................................................................................................................................................................................................................................................................CTACCTGATCATCGAAGCACCTT...................................................................................................................................2312.00200200000000000000
.......................................TTATGCAGGAGCTGAACGCCC...........................................................................................................................................................................................................................................................................................................................................................................................2112.00201100000000000000
.CTCGAGACTATCGTACTCCGTCTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
...................................................TGAACGCCCGAAGAACTAG.................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
................................................................................................................................................................................................................................................................................................................CCTTTC---AATGGACTTGAT..................................................................................................................1812.00200200000000000000
..............................................................................................................................................................................................................................................ATTCTGGTCA-GATATTGGATTCAC................................................................................................................................................................................2412.00200200000000000000
.......................................................................................................................................................................................................................................................................................................ATCGAAGCACCTTTC---AATGGACTT.....................................................................................................................2411.00101000000000000000
............................................................................................................................................................................................................................................................................................TCTACCTGATCATCGAAG.........................................................................................................................................1811.00100100000000000000
...................................................TGAACGCCCGAAGAACTAGGA...............................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................TA-TCTGCTCTACCTGATCATCGAAG.........................................................................................................................................2511.00100100000000000000
........................................TATGCAGGAGCTGAACGCCCGAAGAACT...................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................GCACCTTTC---AATGGACTTGAT..................................................................................................................2111.00100100000000000000
..............................................................................................................................GAAG---------AC--------TACT-------------AATATAAC.........................................................................................................................................................................................................................................................................1811.00100001000000000000
.....................................TTTTATGCAGGAGCTGAACGCCCGA.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..................................................................CTAGGACCAACGCGTACT...................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
......................................TTTATGCAGGAGCTGAACGCCCGA.........................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.........................................ATGCAGGAGCTGAACGCCCGG.........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..............................................................................................................................................................................................................................................ATTCTGGTCA-GATATTGGAT....................................................................................................................................................................................2011.00100100000000000000
..........................................................................................................................................................................................................................................................................................................GAAGCACCTTTC---AATGGACT......................................................................................................................2011.00101000000000000000
..............................................................................................................................................................................................................................................ATTCTGGTCA-GATATTGGAC....................................................................................................................................................................................2011.00100100000000000000
.................................................................................................................................................................................................................................................................ATTCACCTTCTTGCTTTCCTA-TCT.............................................................................................................................................................2411.00100010000000000000
....................................TTTTTATGCAGGAGCTGAACGCCCGA.........................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
....................................................................AGGACCAACGCGTACTATTCGGACT..........................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.......................................TTATGCAGGAGCTGAACGCCCGA.........................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
............................................................................................................................................................................................................................................................................................................AGCACCTTTC---AATGGACT......................................................................................................................1811.00100000100000000000
............................................................................................................................................................................................................................................................................................................AGCACCTTTC---AATGGACTTGAT..................................................................................................................2211.00100000000000100000
droSec2
TCTCGAGGCTATCGTACTCCGTCTACATCTGGCACGTTTTTATGCAGGAGCTGAACGCCCGAAGAACTAGGACCAACACGTACTATTCGGACTACAACATAGTATGTTTTTCGCTTA--------CGAAG-------------------------A----------------CTACA-TCTAAT--------------------C-AAA--------TATATTTCCGTAGATGCTCAAATTCTGGTCA-GATATTGGATTCACCTTCTTGCTTTCCTA-TCTGCTCTACCTGATCATCGAAGCACCTTTC---AATGGACTTGATATTTTCATCCGGCCTCAAA-GGAAGGTAACTCCTA-----A------------CATGAAAACCC-AGACGAACT---------------------CAGAACCTACGCAGGAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................CCAACACGTACTATTCGGACTACAACATA..................................................................................................................................................................................................................................................................................................................................................2911.0011000
.....................................................................................................................................................................................................................................................................................................................................ATTTTCATCCGGCCTCAAA-GGAAGG........................................................................................2511.0010010
droYak3
TGTCCAAGCTCTCCTACTCCGCCTACATCTGGCACATCTTCATCGAGGAGGTCAACCACAGACGCGTTCAGAACAACACGTACTTCTCCAACTATGAAGTGGTAAGTGTGTAACAGAATCAC----CTAA---------AG--------TTCC-------------AATCCGACTTGACCGC----------TT----------C-ATT--------CCCAACTCCACAGATGCTCAGCTTCTGGTCC-ACCTTGGGGTTCACCCTGCTAATGTCCTA-TGTGCTCTACGTTATAATTGAGGCGCCTCTG---GAGGGCTTGGAAAGAATGATATTTCCCAATC-ACCGAAGTGCGC-----CAGCCGGAAAGGATCAGCCGCAAACCG--------------------------------AGTCCGAGTCCCGAACGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................ACCTTGGGGTTCACCCTGCT..........................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................CTACGTTATAATTGAGGCGC......................................................................................................................................2011.00100000010000
.........................CATCTGGCACATCTTCATCGAGGAGGT...................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
TTTCTAGGCTTTCCTACTCCGTGTATATTTGGCACATGTTTGTCCAAGAGGTGAATAGCAGAAATGTGCGGACTAATACATACTTCAGCAACTACTTCGTGGTAAGTCATGGTTGTAATAGT--------------------------------------------------ACTTGTAACA----------TTGATGATTTAAC-ATT--------ACTTATCTTGCAGATGCAACGTTTCTTTTAT-GACCTTGGCTTTACTGTGCTTATGTCCTA-CATTTCGTACCTAATAATCGAAGCCCCGCTG---TGTGGATTTGATGGTCTTTTGCGGCGACAAA-AGATCCCTTCTGCTA-----C------------CCTTCAAGCAA-A----------------------------------------------CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................TTACTGTGCTTATGTCCTA-CATT............................................................................................................................................................2311.0010100000
.......................................................................................................................................................................................................................................................................................................ATCGAAGCCCCGCTG---TGTGGA........................................................................................................................2111.0010000100

Generated: 06/08/2015 at 02:49 PM