dpe_48

AAAAAATATACACGTAAATGTGTGTGGGTGTGCGGGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCACTAAAGACAACCAGAGGAGAGCTGTTTCGCCGGACAGTC *********************************(((.((((((((((..(((.(((.((..((((.(((((((................)))))))))))...))))).)))..))))))).))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V111 male body	M042 female body	V050 head	V057 head
..................................................TGAGTATTGCCTCCTGTTGTAG................................................................................................	22	0	1	1328.00	1328	1307	12	6	3
..................................................TGAGTATTGCCTCCTGTTGTAGT...............................................................................................	23	0	1	797.00	797	789	4	3	1
..................................................TGAGTATTGCCTCCTGTTGTAGTT..............................................................................................	24	0	1	218.00	218	215	2	1	0
...............................................................................................TATACGGTTCGGAATCCTCTAA...................................................	22	0	1	106.00	106	102	1	1	2
..................................................TGAGTATTGCCTCCTGTTGTA.................................................................................................	21	0	1	81.00	81	77	2	2	0
..................................................TGAGTATTGCCTCCTGTTG...................................................................................................	19	0	1	53.00	53	52	1	0	0
..................................................TGAGTATTGCCTCCTGTTGT..................................................................................................	20	0	1	40.00	40	38	2	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGTTT.............................................................................................	25	1	1	32.00	32	32	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGA...............................................................................................	23	1	1	10.00	10	10	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGTTTT............................................................................................	26	1	1	9.00	9	9	0	0	0
...............................................................................................TATACGGTTCGGAATCCTCTA....................................................	21	0	1	9.00	9	9	0	0	0
..................................................TGAGTATTTCCTCCTGTTGTAGT...............................................................................................	23	1	1	4.00	4	4	0	0	0
..................................................TTAGTATTGCCTCCTGTTGTAGTT..............................................................................................	24	1	1	4.00	4	4	0	0	0
..............................................................................................CTATACGGTTCGGAATCCTCTAA...................................................	23	0	1	3.00	3	3	0	0	0
...............................................................................................TATACGGTTCGGAATCCTCTAAA..................................................	23	0	1	3.00	3	3	0	0	0
..................................................TAAGTATTGCCTCCTGTTGTAG................................................................................................	22	1	1	3.00	3	3	0	0	0
..................................................TGAGTATTGCCCCCTGTTGTAGT...............................................................................................	23	1	1	3.00	3	3	0	0	0
..................................................TAAGTATTGCCTCCTGTTGTAGT...............................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TGAGCATTGCCTCCTGTTGTAG................................................................................................	22	1	1	2.00	2	2	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGTTG.............................................................................................	25	0	1	2.00	2	2	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGC...............................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TGAGTATTGCCTCCTGTTTTAG................................................................................................	22	1	1	2.00	2	0	0	2	0
..................................................TGAGTATTGCCTCCTGTTGTAGTTGT............................................................................................	26	0	1	2.00	2	2	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTT.................................................................................................	21	1	1	2.00	2	2	0	0	0
..................................................AGAGTATTGCCTCCTGTTGTAG................................................................................................	22	1	1	2.00	2	2	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTTT................................................................................................	22	2	1	2.00	2	2	0	0	0
..................................................TGAGTATTGCCTCCTGTCGTAGT...............................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TTAGTATTGCCTCCTGTTGTAG................................................................................................	22	1	1	2.00	2	2	0	0	0
...............................................................................................TATACGGTTCGGAATCCTCT.....................................................	20	0	1	2.00	2	2	0	0	0
...............................................................................................TATACAGTTCGGAATCCTCTAA...................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGG..................................................................................................	20	1	1	1.00	1	1	0	0	0
...................................................GAGTATTGCCTCCTGTTGTAG................................................................................................	21	0	1	1.00	1	0	1	0	0
....................................................AGTATTGCCTCCTGTTGTAG................................................................................................	20	0	1	1.00	1	0	0	1	0
..................................................TGAGTATTTCCCCCTGTTGTAGT...............................................................................................	23	2	1	1.00	1	1	0	0	0
.................................................CTGAGTATTGCCTCCTGTTGTAG................................................................................................	23	0	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTTTAT................................................................................................	22	2	1	1.00	1	0	0	1	0
..................................................TGAGTATTGCCTCCTGTTTTAGT...............................................................................................	23	1	1	1.00	1	1	0	0	0
...................................................GAGTATTGCCTCCTGTTGTAGT...............................................................................................	22	0	1	1.00	1	1	0	0	0
..................................................TGAGTATTACCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGCTGTAGTT..............................................................................................	24	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGATGTA.................................................................................................	21	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTACCTCCTGTTGTAGTTT.............................................................................................	25	2	1	1.00	1	1	0	0	0
..................................................TGAGTATCGCCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGAAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCATGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................AGAGTATTGCCTCCTGTTGTAGTT..............................................................................................	24	1	1	1.00	1	1	0	0	0
...............................................................................................TATACTGTTCGGAATCCTCTAA...................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCCCCTGTTGTA.................................................................................................	21	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGTCCCCTGTTGTAGT...............................................................................................	23	2	1	1.00	1	1	0	0	0
..................................................TGGGTATTGCCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTTA..................................................................................................	20	2	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAA................................................................................................	22	1	1	1.00	1	1	0	0	0
...............................................................................................TATACGGTTCGGAATCCTCTTT...................................................	22	2	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTT....................................................................................................	18	0	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGATGTAGTT..............................................................................................	24	1	1	1.00	1	1	0	0	0
....................................................AGTATTGCCTCCTGTTGTAGT...............................................................................................	21	0	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCTTGTTGTAGTT..............................................................................................	24	1	1	1.00	1	1	0	0	0
..................................................TTAGTATTGCCTCCTGTTGTAGT...............................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TGATTATTGCCTCCTGTTGCAG................................................................................................	22	2	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGAA..............................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TGAGTATAGCCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................CGAGTATTGCCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGACTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
...............................................................................................TATACGGTTCGAAATCCTCTAAA..................................................	23	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTGTTT..............................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCCCTTGTAG................................................................................................	22	2	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCTTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTAGCT..............................................................................................	24	1	1	1.00	1	1	0	0	0
.....................................................GTATTGCCTCCTGTTGTAG................................................................................................	19	0	1	1.00	1	1	0	0	0
.......................................................ATTGCCTCCTGTTGTAGT...............................................................................................	18	0	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTTG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGGATTGCCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGAATTGCCTCCTGTTGTAG................................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTGTCGTT..............................................................................................	24	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGCTGTAGT...............................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCATGTTGTAGT...............................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGCTG...................................................................................................	19	1	1	1.00	1	1	0	0	0
..................................................GGAGTATTGCCTCCTGTTGTAGT...............................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TGAGTATTGCCTCCTGTTAGT.................................................................................................	21	3	2	0.50	1	1	0	0	0
...............................................................................................................................................AGGAGGGGTGTTTCGCCGG......	19	2	2	0.50	1	0	0	0	1
..................................................TTAGTATTGCCTCCTGGTT...................................................................................................	19	3	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Type	Alignment
droPer2	scaffold_10:2201364-2201531 -	dpe_48	confident	AAAA--------AATA-----TAC--ACG-TAAATGTGTGTGGGTGTGC---------------------GGGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATA--TCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCACTA-AAGACAACCAGAGGAG-------------------------------AGCT-G-------TTTCGCCG----GA-----------------CAGTC
dp5	4_group4:3182433-3182608 -	dps-mir-2563	Known_mirbase	AAAA--------AATA-----TAC--ACG-TAAATGTGTGTGGGTGTGC-----------G--TGTGTGCGGGTGTGTGCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATA--TCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCACTA-AAGACAACCAGAGGAG-------------------------------AGCT-G-------TTTCGCCG----GA-----------------CAGTC
droWil2	scf2_1100000004521:8626110-8626296 -	dwi_50	confident	AAGA--------A-------------TTA--------------ACTTTGAATTGGAAACGATATTGAAATGAATTTATGCTAAATTCTGAGTATTCCTGATTG-CATAGTGTGT--------ATTTGATACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAATGATAAATGACAGTGACAATGAAAAAGAAAATACCA----------------------------------AAA--CAGAAATTGTGTGAAAC-TTGAGTT
droAna3	scaffold_12916:11084832-11085008 +	dan_44	confident	AATA--GGCCA-ATTAACCCGGA---CCAATCAA-----------TATG---------------------AGTTTTGTGCCAGATTCTGAGTATTCCTGATTG-CATAGCTCTG--------TGTTGTGACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAAATCTGTGTCAACGGCAGCAG-GA-------CTCCACAAAGGACTACAGGAAAG-------------------------CGA----------C-TTAAGTC
droBip1	scf7180000396572:742588-742757 +			AATC--GATCCC----------A---CTAATCAATA---------TACG---------------------AGTTTTGTGCCAGATTCTGAGTATTCCTGATTG-CATAGCTCTG--------ACTTTTGAATGCTATACGGTCTGGGACACTTTTAACATGGCATCAAATAAAAGTCATCGGCAGCTG-GA-------CTTCATCAAGTACTATTTTAGAG-------------------------CTA----------C-ATAAGTT
droKik1	scf7180000302389:431042-431193 -			GCA---------A-------------------------------CTGCA-------GGCGGTAGTGAA--TCATTTGTGCCAGGTTCTGAGTATTCCTGATTG-CATAGCTCTG--------CGTTGGATTCGCTATACGGTCTGGGACACTCGTAACATGGCAGCAAAGCCAAGTCGACGGTGGAAA-GTGC-----------------------------------AA----C-----ACTGA--AGGCGTCC-----------GA
droFic1	scf7180000453932:197636-197793 -			GCCA--------ATCG-----CTCGAGTG--------------ACCGTG---------------------AGTTTTGTGCTACTTTCTGAGTATTCCTGATTG-CATAGCTCTG--------AAAATGAACTGCTATGCTATCAGGGAGACTTCTAACATGGCATCAAATCTGATTCATCCGCGGAAG-CTGT---------------------------------GAAC-----CAAC----GAACGT----CT------CTGGGGT
droEle1	scf7180000490753:30244-30394 +			T---------GTG-------------CCA--------------ATCGCG---------------------AGCTTTGTGCTAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------AGTTTGGATTGCTATACGGTCTGGGACACTTCTAACATGGTATCAAATCTAATTCAACAAATGAAACG-------------------------------CCAGTCTCATAG-------T--GATCAT----CC------T-TGGGC
droRho1	scf7180000778253:33931-34070 -			C---------GCA-------------CCA--------------ATCTCA---------------------AGTTTTGTGCTAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------AGTTCTAATTGCTATACGGTCCGGGACACTTCTAACATGGTATCAAATCTAATTCAACTGAAGAC---C----------------------------------TGAGAT---------------CGT----CC------TTAGAGC
droBia1	scf7180000302422:3830597-3830746 +			AC--------GCG------------AAGG--------------ACCGTG---------------------AGCTTTGCGCCAGATTCTGAGTATTCCTGATTG-CATAGCT-TG--------AGTTTTGATTGCTATACGGTCTGGGACACTTTTAACATGGTGTCAAATCTGAATTACCTGGAGTGTGCAATAGTGGTTTCAC----------------------------------AAA--AAGCAA-----------------TT
droTak1	scf7180000415871:385335-385490 +			GC--------ATG-------------CCG--------------ACCTCG---------------------AGTTTTGTGCTAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------AGTTTCGATTGCTATACGGTCTGGGACACTTTTAACATGGCATTAAATCTGATTCAACTAAAGGAACTTGT------------------------------AGTGAGCCCACTAT------CAACGATT---------C--ACGGC
droEug1	scf7180000409063:317353-317511 +			CCTT--CCTGCTA-------------CCT--------------ACCGCG---------------------ATGTTTGTGCTACATTCTGAGTATTCCTGATTG-CATAGCTCGG--------AGTTGAGATTGCTATACGGTCAGGGAGGCTTTTAACATGGCTTCAAATCTGATTCAACCAAGGGGACTTAC------------------------------AGTGTGATAA-------A--CAACGATC----------T-TTGGC
dm3	chr2L:5641042-5641198 +	dme-mir-960	Known_mirbase	AATGATTATCGTA-------------CCG--------------CCCACG---------------------GGTTTTGTACCACATTCTGAGTATTCCAGATTG-CATAGCTTTG--------TGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGATTCACCTAATAGAATCCGT------------------------------AGTGAGCTCGTTAT-----------------------CA-AGGGC
droSim2	2l:5445797-5445951 +	dsi-mir-960	Known_mirbase	GGAT--CATCGTC-------------ACG--------------CCCACG---------------------GGTTTTGTACCACATTCAGAGTATTCCAGGTTG-CATAGCTTTG--------TGCTACTATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAAATCTGATTCCCCCAAACGAACCCGT------------------------------AATGTGCTCGTTAT-----------------------CA-TGGGC
droSec2	scaffold_5:3718792-3718939 +	dse_335	confident	C---------GTA-------------CCG--------------CCCACG---------------------GGTTTTGTACCACATTCTGAGTATTCCAGATTG-CATAGCTTTG--------TGCTACTATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAAATCTGATTCCCCCAAAGGAACCCGT------------------------------AATGTACTCTTTAT-----------------------CA-AGGCC
droYak3	2L:13552115-13552263 -	dya_163	confident	GGAT--CATCGCT-------------TCG--------------CCCGCG---------------------TGTTTTGTACCAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------GCCTTTGATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAAATCTGATTCAACCGAAGGAA-------------------------------GAAA-A-------TCTAA------------TT---------CATGGGTC
droEre2	scaffold_4929:5729524-5729661 +	der_241	confident	AC--------GCA-------------CCG--------------CCCGCG---------------------TTTTTTGTGCCAGATTCAGAGTATTCCAGATTG-CATAGCTTTG--------GGCTTTGATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA-TCCTATTCAACTGATGGAAACCT--------------------------------G-------A----------------TT---------CATGGGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AAAA--------AATA-----TAC--ACG-TAAATGTGTGTGGGTGTGC---------------------GGGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATA--TCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCACTA-AAGACAACCAGAGGAG-------------------------------AGCT-G-------TTTCGCCG----GA-----------------CAGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................TGAGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	22	1	1328.00	1328	0	12	0	6	3	1307
.......................................................................................TGAGTATTGCCTCCTGTTGTAGT..............................................................................................................................................................	23	1	797.00	797	0	4	0	3	1	789
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTT.............................................................................................................................................................	24	1	218.00	218	0	2	0	1	0	215
......................................................................................................................................TATACGGTTCGGAATCCTCTAA................................................................................................................	22	1	106.00	106	0	1	0	1	2	102
.......................................................................................TGAGTATTGCCTCCTGTTGTA................................................................................................................................................................	21	1	81.00	81	0	2	0	2	0	77
.......................................................................................TGAGTATTGCCTCCTGTTG..................................................................................................................................................................	19	1	53.00	53	0	1	0	0	0	52
.......................................................................................TGAGTATTGCCTCCTGTTGT.................................................................................................................................................................	20	1	40.00	40	0	2	0	0	0	38
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTT............................................................................................................................................................	25	1	32.00	32	0	0	0	0	0	32
.......................................................................................TGAGTATTGCCTCCTGTTGTAGA..............................................................................................................................................................	23	1	10.00	10	0	0	0	0	0	10
......................................................................................................................................TATACGGTTCGGAATCCTCTA.................................................................................................................	21	1	9.00	9	0	0	0	0	0	9
.....................................................................................................................................CTATACGGTTCGGAATCCTCTAA................................................................................................................	23	1	3.00	3	0	0	0	0	0	3
......................................................................................................................................TATACGGTTCGGAATCCTCTAAA...............................................................................................................	23	1	3.00	3	0	0	0	0	0	3
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTG............................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
.......................................................................................TGAGTATTGCCTCCTGTTGTAGC..............................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTGT...........................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.......................................................................................TGAGTATTGCCTCCTGTTGTT................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
.......................................................................................TGAGTATTGCCTCCTGTTGTTT...............................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................TATACGGTTCGGAATCCTCT..................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................................TGAGTATTGCCTCCTGTTGG.................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................GAGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................AGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
......................................................................................CTGAGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................GAGTATTGCCTCCTGTTGTAGT..............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................TGAGTATTGCCTCCTGTTTA.................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................TGAGTATTGCCTCCTGTTGTAA...............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................TATACGGTTCGGAATCCTCTTT................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................TGAGTATTGCCTCCTGTT...................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
.........................................................................................AGTATTGCCTCCTGTTGTAGT..............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................TGAGTATTGCCTCCTGTTGTAGAA.............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................................................................................GTATTGCCTCCTGTTGTAG...............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................ATTGCCTCCTGTTGTAGT..............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
.......................................................................................TGAGTATTGCCTCCTGTTAGT................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1

dp5

AAAA--------AATA-----TAC--ACG-TAAATGTGTGTGGGTGTGC-----------G--TGTGTGCGGGTGTGTGCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATA--TCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCCACTA-AAGACAACCAGAGGAG-------------------------------AGCT-G-------TTTCGCCG----GA-----------------CAGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................TGAGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	22	1	4550.00	4550	1	45	0	1	0	56	368	0	4078	1
......................................................................................................................................TATACGGTTCGGAATCCTCTAA................................................................................................................	22	1	661.00	661	8	2	0	0	0	3	119	1	527	1
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTT.............................................................................................................................................................	24	1	660.00	660	0	8	0	4	0	5	69	0	574	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGT..............................................................................................................................................................	23	1	637.00	637	3	12	0	5	0	20	191	0	405	1
.......................................................................................TGAGTATTGCCTCCTGTTGTA................................................................................................................................................................	21	1	328.00	328	0	9	0	2	0	10	37	0	269	1
.......................................................................................TGAGTATTGCCTCCTGTTGT.................................................................................................................................................................	20	1	162.00	162	0	4	0	1	0	3	15	0	139	0
.......................................................................................TGAGTATTGCCTCCTGTTG..................................................................................................................................................................	19	1	157.00	157	0	10	0	0	0	9	2	0	136	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTT............................................................................................................................................................	25	1	105.00	105	0	0	0	2	0	1	8	0	94	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGA..............................................................................................................................................................	23	1	60.00	60	0	0	0	0	0	0	2	0	58	0
......................................................................................................................................TATACGGTTCGGAATCCTCTA.................................................................................................................	21	1	50.00	50	0	0	0	0	0	0	6	0	44	0
.....................................................................................................................................CTATACGGTTCGGAATCCTCTAA................................................................................................................	23	1	29.00	29	0	1	0	0	0	0	3	0	25	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAA...............................................................................................................................................................	22	1	28.00	28	0	0	0	0	0	0	0	0	28	0
......................................................................................................................................TATACGGTTCGGAATCCTCTAAA...............................................................................................................	23	1	16.00	16	0	0	0	0	0	0	2	0	14	0
..............................................................................................................TGTGGAATATTGAAATA--TCAAC......................................................................................................................................	22	1	15.00	15	0	1	0	0	0	0	0	0	14	0
.......................................................................................TGAGTATTGCCTCCTGTTGTT................................................................................................................................................................	21	1	11.00	11	0	0	0	1	0	0	0	0	10	0
......................................................................................................................................TATACGGTTCGGAATCCTCT..................................................................................................................	20	1	11.00	11	0	0	0	0	0	0	4	0	7	0
........................................................................................GAGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	21	1	7.00	7	0	5	0	0	0	0	1	0	1	0
.......................................................................................TGAGTATTGCCTCCTGTTGTTT...............................................................................................................................................................	22	1	6.00	6	0	1	0	0	0	0	0	0	5	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAT...............................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	6	0
......................................................................................................................................TATACGGTTCGGAATCCTCTAAT...............................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	5	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGAA.............................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	4	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTA.............................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	4	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTG............................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	3	0
......................................................................................CTGAGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	1	0	2	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTA............................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	3	0
........................................................................................GAGTATTGCCTCCTGTTGTAGT..............................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	3	0
............................................................................................ATTGCCTCCTGTTGTAGT..............................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	2	0
........................................................................................GAGTATTGCCTCCTGTTGTA................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAAA..............................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
......................................................................................CTGAGTATTGCCTCCTGTTGTAGT..............................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	0	1	0
......................................................................................................................................TATACGGTTCGGAATCCTCTAAG...............................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................TGTGGAATATTGAAATA--TCA........................................................................................................................................	20	2	1.50	3	0	0	0	0	0	0	0	0	3	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTGTT..........................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTCT............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................CTGAGTATTGCCTCCTGTTGTAGTT.............................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTTAA...........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................GAGTATTGCCTCCTGTTG..................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TATTGCCTCCTGTTGTAG...............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TGAGTATTGCCTCCTGTTT..................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................TATACGGTTCGGAATCCTCTTTT...............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TGAGTATTGCCTCCTGTTGTC................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................TACGGTTCGGAATCCTCTAA................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TGAGTATTGCCTCCTGTT...................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TATACGGTTCGGAATCCTCTAG................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................GTATTGCCTCCTGTTGTAG...............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................TATACGGTTCGGAATCCTCTTT................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................GAGTATTGCCTCCTGTTGTAGTT.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................AGTATTGCCTCCTGTTGTAG...............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGAAA............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................CTATACGGTTCGGAATCCTC...................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................ATTGCCTCCTGTTGTAGA..............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................GAGTATTGCCTCCTGTTGTAT...............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................TATACGGTTCGGAATCCTCTAC................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................CTGAGTATTGCCTCCTGTTGT.................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................ACTATACGGTTCGGAATCCTCT..................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................TATACGGTTCGGAATCCTCTAAC...............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................CTATACGGTTCGGAATCCTCTA.................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................TGAGTATTGCCTCCTGTTGTAGTC.............................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................CTGAGTATTGCCTCCTGTTG..................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................TGTGC-----------G--TGTGTGCGGGTGT................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................GTGGAATATTGAAAT..............................................................................................................................................	15	8	0.13	1	0	0	0	0	0	0	0	0	1	0

droWil2

AAGA--------A-------------TTA--------------ACTTTGAATTGGAAACGATATTGAAATGAATTTATGCTAAATTCTGAGTATTCCTGATTG-CATAGTGTGT--------ATTTGATACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAATGATAAATGACAGTGACAATGAAAAAGAAAATACCA----------------------------------AAA--CAGAAATTGTGTGAAAC-TTGAGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................TGAGTATTCCTGATTG-CATAGT..............................................................................................................................................................	22	6	296.00	1776	8	37	1449	64	218
......................................................................................................................................TATACGGTCGGGGAAACTTTTA................................................................................................................	22	1	49.00	49	5	0	44	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTTT.................................................................................................................	21	1	33.00	33	5	0	28	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	21	6	17.17	103	31	10	53	0	9
......................................................................................................................................TATACGGTCGGGGAAACTTTTAA...............................................................................................................	23	1	17.00	17	9	1	7	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTTTC................................................................................................................	22	1	9.00	9	1	0	8	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTT..................................................................................................................	20	1	8.00	8	0	1	7	0	0
......................................................................................................................................TATACGGTCGGGGAAACTT...................................................................................................................	19	1	3.00	3	0	0	3	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTTTAAA..............................................................................................................	24	1	2.00	2	2	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATAGT..............................................................................................................................................................	23	6	1.33	8	0	0	8	0	0
.......................................................................................TGAGTATTCCTGATTG-CATA................................................................................................................................................................	20	6	1.33	8	0	1	2	1	4
......................................................................................................................................TATACGGTCGGGGAAACTTTC.................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTTCCC...............................................................................................................	23	1	1.00	1	0	0	1	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTTTCC...............................................................................................................	23	1	1.00	1	1	0	0	0	0
........................................................................................GAGTATTCCTGATTG-CATAGT..............................................................................................................................................................	21	7	0.86	6	0	5	0	0	1
.......................................................................................TGAGTATTCCTGATTG-CAT.................................................................................................................................................................	19	6	0.50	3	0	0	1	0	2
.........................................................................................AGTATTCCTGATTG-CATAGT..............................................................................................................................................................	20	7	0.43	3	0	0	3	0	0
......................................................................................................................................TATACGGTCGGGGAAACTTTCT................................................................................................................	22	3	0.33	1	0	0	1	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGG..............................................................................................................................................................	22	6	0.33	2	1	1	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGA..............................................................................................................................................................	22	6	0.33	2	0	0	2	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGTT.............................................................................................................................................................	23	6	0.33	2	0	0	2	0	0
...........................................................................................TATTCCTGATTG-CATAGTGTGT--------ATT...............................................................................................................................................	25	7	0.29	2	0	1	0	1	0
.......................................................................................TGAGTATTCCTGATTG-CATAGAA.............................................................................................................................................................	23	6	0.17	1	0	0	1	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGTCA............................................................................................................................................................	24	6	0.17	1	0	0	1	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	22	6	0.17	1	0	0	0	0	1
.......................................................................................TGAGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	23	6	0.17	1	0	0	1	0	0
.....................................................................................TCTGAGTATTCCTGATTG-CATAGTGTG...........................................................................................................................................................	27	6	0.17	1	0	0	0	1	0
.......................................................................................TGAGTATTCCTGATTG-CATAGTG.............................................................................................................................................................	23	6	0.17	1	0	0	0	0	1
...................................................................................ATTCTGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	22	6	0.17	1	0	0	1	0	0
...........................................................................................TATTCCTGATTG-CATAGT..............................................................................................................................................................	18	7	0.14	1	0	1	0	0	0
................................................................................................................................................................................................................................................A--CAGAAATTGTGTGAAAC-TTGAGTT	25	8	0.13	1	0	0	0	1	0

droAna3

AATA--GGCCA-ATTAACCCGGA---CCAATCAA-----------TATG---------------------AGTTTTGTGCCAGATTCTGAGTATTCCTGATTG-CATAGCTCTG--------TGTTGTGACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAAATCTGTGTCAACGGCAGCAG-GA-------CTCCACAAAGGACTACAGGAAAG-------------------------CGA----------C-TTAAGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................TGAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	22	1	146.00	146	22	1	0	15	45	63
.......................................................................................TGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	21	1	57.00	57	11	0	0	7	35	4
.......................................................................................TGAGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	23	1	56.00	56	2	0	0	5	39	10
......................................................................................................................................TATACGGTCTGGGACACTTCT.................................................................................................................	21	1	38.00	38	2	0	0	0	33	3
........................................................................................................................................TACGGTCTGGGACACTTCTAAC..............................................................................................................	22	1	36.00	36	9	0	0	1	7	19
........................................................................................................................................TACGGTCTGGGACACTTCTAACA.............................................................................................................	23	1	26.00	26	12	0	0	0	7	7
......................................................................................CTGAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	23	1	25.00	25	3	0	0	1	18	3
......................................................................................CTGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	22	1	21.00	21	3	0	0	4	12	2
.....................................................................................TCTGAGTATTCCTGATTG-CAT.................................................................................................................................................................	21	1	18.00	18	3	0	0	1	12	2
......................................................................................................................................TATACGGTCTGGGACACTTC..................................................................................................................	20	1	16.00	16	0	0	0	0	16	0
......................................................................................CTGAGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	24	1	16.00	16	0	0	0	1	9	6
......................................................................................................................................TATACGGTCTGGGACACTTCTAA...............................................................................................................	23	1	15.00	15	0	0	0	0	10	5
....................................................................................TTCTGAGTATTCCTGATTG-CAT.................................................................................................................................................................	22	1	13.00	13	0	0	0	4	9	0
......................................................................................................................................TATACGGTCTGGGACACTTCTA................................................................................................................	22	1	13.00	13	3	0	0	0	6	4
........................................................................................................................................TACGGTCTGGGACACTTCTAA...............................................................................................................	21	1	11.00	11	3	0	0	1	2	5
....................................................................................TTCTGAGTATTCCTGATTG-CA..................................................................................................................................................................	21	1	9.00	9	2	0	0	0	6	1
........................................................................................................................................TACGGTCTGGGACACTTCTA................................................................................................................	20	1	8.00	8	2	0	0	1	4	1
.........................................................................................AGTATTCCTGATTG-CATAGCTC............................................................................................................................................................	22	1	7.00	7	3	0	0	2	2	0
.........................................................................................AGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	21	1	6.00	6	0	0	0	0	6	0
.......................................................................................TGAGTATTCCTGATTG-CATAGCTT............................................................................................................................................................	24	1	5.00	5	0	0	0	0	2	3
........................................................................................................................................TACGGTCTGGGACACTTCT.................................................................................................................	19	1	4.00	4	3	0	0	0	0	1
.....................................................................................TCTGAGTATTCCTGATTG-CATA................................................................................................................................................................	22	1	4.00	4	0	0	0	2	1	1
......................................................................................................................................TATACGGTCTGGGACACTTT..................................................................................................................	20	1	4.00	4	0	0	0	0	4	0
......................................................................................CTGAGTATTCCTGATTG-CAT.................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0
......................................................................................CTGAGTATTCCTGATTG-CATAGCTT............................................................................................................................................................	25	1	3.00	3	0	0	0	0	3	0
.........................................................................................AGTATTCCTGATTG-CATAGCTCT...........................................................................................................................................................	23	1	3.00	3	0	0	0	0	3	0
........................................................................................GAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................CTATACGGTCTGGGACACTTC..................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
......................................................................................CTGAGTATTCCTGATTG-CATAGT..............................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
......................................................................................CTGAGTATTCCTGATTG-CATA................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................TATACGGTCTGGGACACTT...................................................................................................................	19	1	2.00	2	1	0	0	0	1	0
.........................................................................................................................................ACGGTCTGGGACACTTCTAACA.............................................................................................................	22	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................GCTATACGGTCTGGGACACTTC..................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................ATACGGTCTGGGACACTTCT.................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTCTT................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
......................................................................................................................................TATACGGTCTGGGACACTTCTAT...............................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................TACGGTCTGGGACACTTCTAT...............................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................TGAGTATTCCTGATTG-CATAGCA.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................AGTATTCCTGATTG-CATAGC..............................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................GCTATACGGTCTGGGACACT....................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................GAGTATTCCTGATTG-CATAG...............................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................GTATTCCTGATTG-CATAGCTC............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTCA.................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................GAGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTCTT................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.........................................................................................AGTATTCCTGATTG-CATAGCTT............................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droBip1

AATC--GATCCC----------A---CTAATCAATA---------TACG---------------------AGTTTTGTGCCAGATTCTGAGTATTCCTGATTG-CATAGCTCTG--------ACTTTTGAATGCTATACGGTCTGGGACACTTTTAACATGGCATCAAATAAAAGTCATCGGCAGCTG-GA-------CTTCATCAAGTACTATTTTAGAG-------------------------CTA----------C-ATAAGTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCA---------A-------------------------------CTGCA-------GGCGGTAGTGAA--TCATTTGTGCCAGGTTCTGAGTATTCCTGATTG-CATAGCTCTG--------CGTTGGATTCGCTATACGGTCTGGGACACTCGTAACATGGCAGCAAAGCCAAGTCGACGGTGGAAA-GTGC-----------------------------------AA----C-----ACTGA--AGGCGTCC-----------GA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCA--------ATCG-----CTCGAGTG--------------ACCGTG---------------------AGTTTTGTGCTACTTTCTGAGTATTCCTGATTG-CATAGCTCTG--------AAAATGAACTGCTATGCTATCAGGGAGACTTCTAACATGGCATCAAATCTGATTCATCCGCGGAAG-CTGT---------------------------------GAAC-----CAAC----GAACGT----CT------CTGGGGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T---------GTG-------------CCA--------------ATCGCG---------------------AGCTTTGTGCTAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------AGTTTGGATTGCTATACGGTCTGGGACACTTCTAACATGGTATCAAATCTAATTCAACAAATGAAACG-------------------------------CCAGTCTCATAG-------T--GATCAT----CC------T-TGGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C---------GCA-------------CCA--------------ATCTCA---------------------AGTTTTGTGCTAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------AGTTCTAATTGCTATACGGTCCGGGACACTTCTAACATGGTATCAAATCTAATTCAACTGAAGAC---C----------------------------------TGAGAT---------------CGT----CC------TTAGAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AC--------GCG------------AAGG--------------ACCGTG---------------------AGCTTTGCGCCAGATTCTGAGTATTCCTGATTG-CATAGCT-TG--------AGTTTTGATTGCTATACGGTCTGGGACACTTTTAACATGGTGTCAAATCTGAATTACCTGGAGTGTGCAATAGTGGTTTCAC----------------------------------AAA--AAGCAA-----------------TT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GC--------ATG-------------CCG--------------ACCTCG---------------------AGTTTTGTGCTAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------AGTTTCGATTGCTATACGGTCTGGGACACTTTTAACATGGCATTAAATCTGATTCAACTAAAGGAACTTGT------------------------------AGTGAGCCCACTAT------CAACGATT---------C--ACGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCTT--CCTGCTA-------------CCT--------------ACCGCG---------------------ATGTTTGTGCTACATTCTGAGTATTCCTGATTG-CATAGCTCGG--------AGTTGAGATTGCTATACGGTCAGGGAGGCTTTTAACATGGCTTCAAATCTGATTCAACCAAGGGGACTTAC------------------------------AGTGTGATAA-------A--CAACGATC----------T-TTGGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATGATTATCGTA-------------CCG--------------CCCACG---------------------GGTTTTGTACCACATTCTGAGTATTCCAGATTG-CATAGCTTTG--------TGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGATTCACCTAATAGAATCCGT------------------------------AGTGAGCTCGTTAT-----------------------CA-AGGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................TGAGTATTCCAGATTG-CATAG...............................................................................................................................................................	21	1	19260.00	19260	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	2	2	3	2526	0	0	1	0	0	0	0	0	0	0	0	3	8	6	4	2	2	17	24	4	5	7	11	6	16	13	8	13	1	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	0	0	2	0	0	0	0	0	0	1	1	2	2	1	61	5	3	78	0	0	0	11	20	14	0	0	5	0	4	12	0	36	4	0	0	46	1	0	2	0	0	0	0	0	0	0	1	0	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	25	28	8	33	85	5	5	8	9	0	0	0	0	0	1	0	16	3	4	6	4	4	0	10	0	1	2	49	11	7	0	11	2	9	20	0	0	0	5	0	9	2562	32	3724	3	3	0	0	2139	2	2045	8	0	0	0	0	0	2	7	0	0	0	0	0	0	2	0	0	68	431	5	34	8	8	34	83	6	7	11	15	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	2	1	109	0	0	91	0	0	0	0	0	1	0	0	2	0	0	1	0	0	0	0	0	1	4	0	0	116	517	23	153	17	95	12	59	0	0	0	1	0	7	25	13	9	1	5	549	16	1	3	6	21	12	20	411	779	359	699	0	0	14	107	17	0	1	1	0	0	0	0	0	0	0	0	39	4	197	7	10	9	8	45	0	2	5	2	0
.......................................................................................TGAGTATTCCAGATTG-CATAGC..............................................................................................................................................................	22	1	13950.00	13950	0	0	0	0	1	3	0	1	0	0	1	38	3	0	0	0	0	0	0	0	8	1	18	2270	0	0	0	1	0	0	0	0	0	0	0	18	61	27	23	18	13	61	105	27	29	29	68	14	39	26	49	21	19	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	12	13	6	0	1	3	10	8	0	0	1	6	2	32	3	4	335	3	10	98	1	0	13	25	4	12	0	1	32	0	7	13	5	308	4	0	5	51	0	0	0	0	0	0	0	0	2	0	0	0	0	0	9	17	0	0	0	0	0	2	0	20	0	1	1	1	0	22	59	128	47	123	158	5	0	11	11	0	0	0	0	0	1	9	0	0	0	2	0	1	0	3	2	1	2	26	32	5	0	2	3	5	37	0	2	0	2	1	4	457	40	968	5	4	0	0	304	0	793	9	0	0	0	0	0	3	24	0	0	0	1	0	0	0	0	0	119	592	12	38	71	96	194	517	134	55	222	235	1	1	1	1	0	1	0	0	6	3	0	4	0	0	0	9	2	246	2	4	201	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	1	2	0	0	102	472	15	89	10	47	2	35	2	1	0	0	0	2	5	0	2	2	22	184	19	1	6	11	42	16	23	160	1267	154	265	0	0	27	245	29	2	0	3	0	1	0	0	0	0	0	0	36	5	158	16	30	40	31	168	1	15	10	2	0
........................................................................................................................................TACGGTCTGGGACACTTTTAACA.............................................................................................................	23	1	3204.00	3204	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	53	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	1	1	0	2	3	0	3	2	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	2	1	0	0	0	2	0	0	0	0	1	1	1	0	0	33	0	0	20	0	0	8	11	4	0	0	0	2	0	0	2	0	37	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	6	7	6	1	81	0	2	2	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	3	1	1	0	0	0	6	0	0	0	0	1	0	4	300	8	483	3	0	0	0	169	0	447	5	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	19	16	0	7	18	22	33	107	37	22	68	49	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	149	1	6	5	51	4	30	0	0	0	0	0	0	3	0	0	3	1	13	1	0	0	1	6	0	7	69	352	99	65	0	0	0	33	8	0	0	0	0	0	0	0	0	0	0	0	6	0	51	1	8	5	4	13	0	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTTTAAC..............................................................................................................	22	1	2715.00	2715	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	1	46	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	4	0	2	1	0	3	1	1	2	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	3	1	0	3	0	0	0	0	0	0	0	0	0	0	0	15	0	1	33	0	0	1	3	0	2	0	0	0	0	0	0	0	33	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	8	3	3	57	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	0	0	0	0	0	0	0	0	0	0	3	0	4	302	10	405	1	0	0	0	217	0	373	0	3	0	0	0	1	2	1	0	0	0	0	0	0	2	0	0	20	40	1	21	17	22	37	122	19	17	57	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	122	4	3	2	39	3	22	0	0	0	0	0	0	1	0	0	1	0	11	1	0	0	0	2	2	7	43	155	63	54	0	0	0	29	14	0	0	0	0	0	0	0	0	0	0	0	17	0	35	3	7	5	4	15	0	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTT.................................................................................................................	21	1	2690.00	2690	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	145	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	2	0	7	0	0	0	2	2	0	0	0	1	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	4	2	0	10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	1	2	0	0	0	8	3	0	258	2	658	1	3	0	0	202	1	444	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	14	22	1	32	6	4	9	21	6	1	22	10	2	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	40	1	7	3	15	0	7	1	0	0	0	0	0	1	0	0	0	2	26	0	0	0	0	2	6	9	66	174	53	163	0	0	4	38	9	0	0	0	0	0	0	0	0	0	0	0	16	1	41	2	1	1	8	15	0	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTTA................................................................................................................	22	1	2484.00	2484	0	0	0	0	1	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	123	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	1	0	0	1	0	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	12	0	0	7	0	0	1	2	0	0	0	0	1	0	2	1	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	3	3	2	23	0	7	0	2	0	0	0	0	0	0	4	4	1	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	6	0	0	0	6	1	0	199	1	494	0	5	0	0	152	1	452	0	0	0	0	0	0	2	1	0	0	4	0	0	0	2	0	0	17	33	0	20	12	2	22	41	6	2	33	19	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	65	4	2	0	15	1	9	0	0	0	0	0	0	0	1	0	0	0	24	0	0	0	0	1	0	7	70	123	49	135	0	0	8	48	14	0	0	1	0	0	0	0	0	0	0	0	13	0	33	2	4	5	6	36	0	0	0	1	0
........................................................................................................................................TACGGTCTGGGACACTTTTAA...............................................................................................................	21	1	641.00	641	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	1	5	0	0	0	1	1	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	17	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	48	3	125	0	0	0	0	52	0	89	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	9	11	0	1	1	2	3	12	2	2	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	12	0	1	1	9	0	8	0	0	0	0	0	1	0	0	0	0	0	4	1	0	0	1	1	0	0	8	62	14	15	0	0	0	4	4	0	0	0	0	0	0	0	0	0	1	0	4	1	11	0	5	0	2	4	0	0	0	0	0
.......................................................................................TGAGTATTCCAGATTG-CATA................................................................................................................................................................	20	1	544.00	544	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	127	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	4	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	4	0	0	52	1	117	0	0	0	0	39	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	14	0	1	0	0	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0	0	7	26	5	8	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	5	0	2	0	0	1	0	0	0	0	0
.......................................................................................TGAGTATTCCAGATTG-CAT.................................................................................................................................................................	19	1	540.00	540	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	2	3	0	2	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	1	39	4	85	0	0	0	0	37	0	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	16	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	7	14	1	7	1	2	1	0	0	1	0	0	0	0	1	3	2	0	0	7	0	0	1	0	0	0	3	16	72	18	21	0	0	1	5	0	0	0	1	0	0	0	0	0	0	0	0	2	1	6	0	3	2	1	5	0	1	0	0	0
.......................................................................................TGAGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	23	1	402.00	402	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	1	1	2	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	21	0	56	0	0	0	0	9	0	37	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	12	0	3	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	8	0	1	0	2	0	1	1	0	0	0	0	0	1	0	1	0	0	6	1	0	0	0	1	1	2	12	117	9	8	0	0	4	9	4	0	0	1	0	0	0	0	0	0	0	0	2	0	9	1	0	1	0	5	0	0	0	0	0
.........................................................................................AGTATTCCAGATTG-CATAGCTT............................................................................................................................................................	22	1	387.00	387	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	4	0	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	37	0	139	1	2	0	0	11	0	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	16	1	2	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	2	0	0	0	0	0	0	1	0	0	0	0	8	0	0	0	0	1	0	0	3	16	7	7	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	4	0	6	0	1	1	0	4	0	0	0	0	0
....................................................................................TTCTGAGTATTCCAGATTG-CAT.................................................................................................................................................................	22	1	298.00	298	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	3	0	0	0	2	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	8	1	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	37	1	25	2	0	0	0	21	0	13	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0	3	6	0	0	2	1	8	57	2	2	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	14	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	1	0	0	0	0	0	0	0	0
.......................................................................................TGAGTATTCCAGATTG-CATAGA..............................................................................................................................................................	22	1	265.00	265	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	110	8	15	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	1	0	0	0	0	0	0	3	0	15	0	0	0	0	3	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	1	9	4	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTT..................................................................................................................	20	1	245.00	245	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	19	0	71	0	0	0	0	17	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	3	6	10	8	23	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	6	0	0	0	0	0	0	0	0	0	0
.......................................................................................TGAGTATTCCAGATTG-CATAGCA.............................................................................................................................................................	23	1	202.00	202	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	4	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	20	0	0	0	0	4	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	3	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	18	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	2	52	5	3	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0
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.......................................................................................TGAGTATTCCAGATTG-CATAGAA.............................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TTCTGAGTATTCCAGATTG-CA..................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACAC.....................................................................................................................	17	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGAT--CATCGTC-------------ACG--------------CCCACG---------------------GGTTTTGTACCACATTCAGAGTATTCCAGGTTG-CATAGCTTTG--------TGCTACTATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAAATCTGATTCCCCCAAACGAACCCGT------------------------------AATGTGCTCGTTAT-----------------------CA-TGGGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................TACGATCTGGGACACTTTTAA...............................................................................................................	21	1	5281.00	5281	1	7	0	0	1	0	12	12	0	0	2	0	5	5241	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTT.................................................................................................................	21	1	3162.00	3162	0	11	0	0	25	1	7	9	1	0	3	0	5	3100	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTT..................................................................................................................	20	1	2145.00	2145	0	1	0	1	22	0	1	4	0	0	0	0	1	2115	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTA................................................................................................................	20	1	2138.00	2138	0	0	0	0	4	0	1	1	0	0	0	0	4	2128	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTA................................................................................................................	22	1	1367.00	1367	0	2	0	0	61	1	11	18	0	0	4	0	3	1267	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACACTTT..................................................................................................................	22	1	1075.00	1075	0	0	0	0	2	0	0	0	0	0	0	0	4	1069	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAAC..............................................................................................................	22	1	895.00	895	0	83	7	0	7	0	25	60	0	0	1	0	1	711	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTT.................................................................................................................	19	1	780.00	780	0	2	0	0	1	0	0	2	0	0	2	0	5	768	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTT.................................................................................................................	20	1	379.00	379	0	0	0	0	3	0	0	0	0	0	0	0	0	376	0	0	0
.........................................................................................AGTATTCCAGGTTG-CATAGC..............................................................................................................................................................	20	1	310.00	310	0	0	0	0	303	6	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................AGTATTCCAGGTTG-CATAGCTT............................................................................................................................................................	22	1	294.00	294	0	1	0	1	231	5	2	0	0	0	50	1	0	3	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTT................................................................................................................	22	1	275.00	275	0	0	0	0	0	0	0	0	0	0	0	0	2	273	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAACA.............................................................................................................	23	1	272.00	272	0	17	1	0	3	0	18	76	0	0	1	0	0	155	0	0	1
......................................................................................................................................TGTACGATCTGGGACACTT...................................................................................................................	19	1	219.00	219	0	1	0	0	15	0	1	0	0	0	1	0	0	201	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTA................................................................................................................	21	1	158.00	158	0	0	0	0	2	0	0	0	0	0	0	0	0	156	0	0	0
.........................................................................................AGTATTCCAGGTTG-CATA................................................................................................................................................................	18	1	115.00	115	0	0	0	0	114	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................AGTATTCCAGGTTG-CATAGCT.............................................................................................................................................................	21	1	103.00	103	0	2	0	1	92	1	1	0	0	0	6	0	0	0	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTAA...............................................................................................................	22	1	90.00	90	0	0	0	0	0	0	0	0	0	0	0	0	0	90	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACACTT...................................................................................................................	21	1	76.00	76	0	0	0	0	0	0	0	0	0	0	0	0	0	76	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTT..................................................................................................................	19	1	60.00	60	0	0	0	0	0	0	0	0	0	0	0	0	1	59	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAAA..............................................................................................................	22	1	55.00	55	0	0	0	0	0	0	1	0	0	0	0	0	0	54	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTTT...............................................................................................................	23	1	51.00	51	0	0	0	0	0	0	0	0	0	0	0	0	0	51	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTA.................................................................................................................	21	1	40.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	40	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTT................................................................................................................	21	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0
.........................................................................................AGTATTCCAGGTTG-CATAG...............................................................................................................................................................	19	1	29.00	29	0	0	0	0	28	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TGTACGATCTGGGACACT....................................................................................................................	18	1	28.00	28	0	4	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTA..................................................................................................................	20	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0
....................................................................................TTCAGAGTATTCCAGGTTG-CAT.................................................................................................................................................................	22	1	25.00	25	0	0	0	0	22	1	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTAA...............................................................................................................	23	1	23.00	23	0	0	0	0	0	0	1	3	0	0	0	0	0	19	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTT................................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	1	21	0	0	0
.......................................................................................AGAGTATTCCAGGTTG-CATAGC..............................................................................................................................................................	22	1	20.00	20	0	0	0	0	18	0	0	0	0	0	1	1	0	0	0	0	0
...................................................................................................................................TGCTGTACGATCTGGGACACTTT..................................................................................................................	23	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0
.........................................................................................AGTATTCCAGGTTG-CATAGCTTT...........................................................................................................................................................	23	1	16.00	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TCAGAGTATTCCAGGTTG-CAT.................................................................................................................................................................	21	1	13.00	13	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTAAC..............................................................................................................	23	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAACAA............................................................................................................	24	1	12.00	12	0	1	0	0	0	0	1	1	0	0	0	0	0	9	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACACT....................................................................................................................	20	1	8.00	8	0	0	0	0	1	0	0	0	0	0	0	0	0	7	0	0	0
...................................................................................................................................TGCTGTACGATCTGGGACACTT...................................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTTT...............................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
..................................................................................................................................TTGCTGTACGATCTGGGACACTT...................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
....................................................................................TTCAGAGTATTCCAGGTT......................................................................................................................................................................	18	1	7.00	7	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTAT...............................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
.....................................................................................................................................CTGTACGATCTGGGACACTTT..................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACACTTTT.................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAT...............................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
.......................................................................................AGAGTATTCCAGGTTG-CA..................................................................................................................................................................	18	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACAC.....................................................................................................................	19	1	6.00	6	0	0	0	0	1	0	0	0	0	0	0	0	0	5	0	0	0
......................................................................................................................................TGTACGATCTGGGACAC.....................................................................................................................	17	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
........................................................................................................................................TACGATCTGGGACACTTT..................................................................................................................	18	1	5.00	5	0	0	0	0	2	0	0	1	0	0	0	0	0	2	0	0	0
....................................................................................TTCAGAGTATTCCAGGTTG-CA..................................................................................................................................................................	21	1	5.00	5	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................TTCAGAGTATTCCAGGTTG-CATA................................................................................................................................................................	23	1	4.00	4	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTG................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
...................................................................................................................................TGCTGTACGATCTGGGACACT....................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTAAA..............................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTAT...............................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTTT...............................................................................................................	21	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
......................................................................................................................................TGTACGATCTGGGACA......................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTTATT..............................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAACT.............................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTA.................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.........................................................................................................................................ACGATCTGGGACACTTTTA................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTAA.................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTA...................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................................................TACGATCTGGGACACTTA..................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................GTACGATCTGGGACACTTTA.................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTG.................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACACTTA..................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................AGAGTATTCCAGGTTG-CAT.................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTAAC..............................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
.........................................................................................................................................ACGATCTGGGACACTTTTAA...............................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................CTGTACGATCTGGGACACTT...................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................TCAGAGTATTCCAGGTTG-C...................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAGAGTATTCCAGGTTG-CATAGC..............................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TACGATCTGGGACACTTAA.................................................................................................................	19	3	1.67	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
.........................................................................................................................................ACGATCTGGGACACTTTTAAC..............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................ACGATCTGGGACACTTTTAACA.............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................TACGATCTGGGACACTT...................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTTTTAAA..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................GCTGTACGATCTGGGACACTTTA.................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................CGATCTGGGACACTTTTAA...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................TGTACGATCTGGGACACTAA..................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................TTCAGAGTATTCCAGGTTG-CAA.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................ACGATCTGGGACACTTTTT................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................TACGATCTGGGACACTTTTAATC.............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................ATTCCAGGTTG-CATAGCTTT...........................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

C---------GTA-------------CCG--------------CCCACG---------------------GGTTTTGTACCACATTCTGAGTATTCCAGATTG-CATAGCTTTG--------TGCTACTATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAAATCTGATTCCCCCAAAGGAACCCGT------------------------------AATGTACTCTTTAT-----------------------CA-AGGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................AGTATTCCAGATTG-CATAGCTT............................................................................................................................................................	22	1	1636.00	1636	5	1386	176	69
.........................................................................................AGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	21	1	142.00	142	1	136	1	4
.......................................................................................TGAGTATTCCAGATTG-CATAGC..............................................................................................................................................................	22	1	82.00	82	1	32	43	6
......................................................................................................................................TGTACGATCTGGGAGACTTTTA................................................................................................................	22	1	55.00	55	4	45	2	4
.......................................................................................TGAGTATTCCAGATTG-CATAG...............................................................................................................................................................	21	1	33.00	33	0	31	0	2
........................................................................................................................................TACGATCTGGGAGACTTTTAAC..............................................................................................................	22	1	31.00	31	0	25	5	1
......................................................................................................................................TGTACGATCTGGGAGACTTTT.................................................................................................................	21	1	27.00	27	1	25	0	1
........................................................................................................................................TACGATCTGGGAGACTTTTAACA.............................................................................................................	23	1	18.00	18	0	10	8	0
........................................................................................................................................TACGATCTGGGAGACTTTTAA...............................................................................................................	21	1	9.00	9	0	8	0	1
........................................................................................................................................TACGATCTGGGAGACTTTTA................................................................................................................	20	1	6.00	6	1	5	0	0
....................................................................................................................................GCTGTACGATCTGGGAGACTTT..................................................................................................................	22	1	6.00	6	0	3	3	0
.........................................................................................AGTATTCCAGATTG-CATAGCTTT...........................................................................................................................................................	23	1	4.00	4	0	2	1	1
.......................................................................................TGAGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	23	1	3.00	3	0	2	0	1
........................................................................................................................................TACGATCTGGGAGACTTTT.................................................................................................................	19	1	3.00	3	0	3	0	0
........................................................................................................................................TACGATCTGGGAGACTTTTAAA..............................................................................................................	22	1	2.00	2	0	2	0	0
......................................................................................................................................TGTACGATCTGGGAGACTTT..................................................................................................................	20	1	2.00	2	0	2	0	0
........................................................................................GAGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......................................................................................TGAGTATTCCAGATTG-CATAGCA.............................................................................................................................................................	23	1	1.00	1	0	1	0	0
.......................................................................................TGAGTATTCCAGATTG-CATAGT..............................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................................................................................................................................GTACGATCTGGGAGACTTTTA................................................................................................................	21	1	1.00	1	0	1	0	0
.......................................................................................TGAGTATTCCAGATTG-CAT.................................................................................................................................................................	19	1	1.00	1	0	0	0	1
.....................................................................................TCTGAGTATTCCAGATTG-CAT.................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.........................................................................................AGTATTCCAGATTG-CATAGCTTTT--------..................................................................................................................................................	24	1	1.00	1	0	1	0	0
.......................................................................................TGAGTATTCCAGATTG-CATAGCC.............................................................................................................................................................	23	1	1.00	1	0	1	0	0
.......................................................................................TGAGTATTCCAGATTG-CATAGA..............................................................................................................................................................	22	1	1.00	1	0	1	0	0
.........................................................................................AGTATTCCAGATTG-CATAG...............................................................................................................................................................	19	1	1.00	1	0	1	0	0
....................................................................................................................................GCTGTACGATCTGGGAGACTTTT.................................................................................................................	23	1	1.00	1	0	0	1	0
.....................................................................................TCTGAGTATTCCAGATTG-CATA................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.........................................................................................AGTATTCCAGATTG-CATAGCTA............................................................................................................................................................	22	1	1.00	1	0	1	0	0
..........................................................................................GTATTCCAGATTG-CATAGCTT............................................................................................................................................................	21	1	1.00	1	0	1	0	0

droYak3

GGAT--CATCGCT-------------TCG--------------CCCGCG---------------------TGTTTTGTACCAGATTCTGAGTATTCCTGATTG-CATAGCTTTG--------GCCTTTGATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAAATCTGATTCAACCGAAGGAA-------------------------------GAAA-A-------TCTAA------------TT---------CATGGGTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................TGAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	22	1	57.00	57	0	12	5	3	2	2	33	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	21	1	52.00	52	13	14	0	0	2	0	23	0	0	0	0
.........................................................................................AGTATTCCTGATTG-CATAGCTT............................................................................................................................................................	22	1	36.00	36	17	0	0	0	0	2	17	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTTTAACG.............................................................................................................	23	1	35.00	35	22	0	0	0	0	0	13	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATAG...............................................................................................................................................................	22	1	35.00	35	6	5	0	0	1	2	21	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTT.................................................................................................................	21	1	26.00	26	0	0	0	0	0	0	26	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	23	1	21.00	21	0	1	1	1	0	0	18	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTTA................................................................................................................	22	1	13.00	13	1	0	0	0	0	0	12	0	0	0	0
.........................................................................................AGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	21	1	8.00	8	6	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTTAA...............................................................................................................	23	1	7.00	7	5	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTTTAAC..............................................................................................................	22	1	7.00	7	3	0	0	0	0	0	4	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGT..............................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	6	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATA................................................................................................................................................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CAT.................................................................................................................................................................	20	1	3.00	3	1	1	0	0	0	0	1	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CAT.................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	1	2	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTT..................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................ATACGGTCTGGGACACTTTT.................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTTTAA...............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................GAGTATTCCTGATTG-CATAGC..............................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATA................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.........................................................................................AGTATTCCTGATTG-CATAGC..............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CTATACGGTCTGGGACACTT...................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTTTA................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................TACGGTCTGGGACACTTTTAACGT............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGA..............................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................AGTATTCCTGATTG-CATAG...............................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................TTCTGAGTATTCCTGATTG-CAT.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTTT................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................ATACGGTCTGGGACACTTTTA................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATAGA..............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................GTATTCCTGATTG-CATAGCT.............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................CTGAGTATTCCTGATTG-CATAGCT.............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................TGCTATACGGTCTGGGACACT....................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
....................................................................................TTCTGAGTATTCCTGATTG-C...................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................TCTGAGTATTCCTGATTG-CAT.................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................TGAGTATTCCTGATTG-CATAGCA.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................TTCTGAGTATTCCTGATTG-CA..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................ATACGGTCTGGGACACTTTTAA...............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................GAGTATTCCTGATTG-CATAG...............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AC--------GCA-------------CCG--------------CCCGCG---------------------TTTTTTGTGCCAGATTCAGAGTATTCCAGATTG-CATAGCTTTG--------GGCTTTGATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA-TCCTATTCAACTGATGGAAACCT--------------------------------G-------A----------------TT---------CATGGGTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................AGTATTCCAGATTG-CATAGCTT............................................................................................................................................................	22	1	644.00	644	0	0	0	3	566	75	0
......................................................................................................................................TATACGGTCTGGGACACTTTAA................................................................................................................	22	1	136.00	136	0	0	3	0	126	7	0
......................................................................................CAGAGTATTCCAGATTG-CATAG...............................................................................................................................................................	22	1	125.00	125	1	0	1	1	108	14	0
.......................................................................................AGAGTATTCCAGATTG-CATAGC..............................................................................................................................................................	22	1	90.00	90	0	1	2	0	58	29	0
......................................................................................................................................TATACGGTCTGGGACACTTTA.................................................................................................................	21	1	87.00	87	0	0	0	1	76	10	0
.........................................................................................AGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	21	1	78.00	78	0	0	0	0	74	4	0
......................................................................................................................................TATACGGTCTGGGACACTTT..................................................................................................................	20	1	59.00	59	2	0	2	0	53	2	0
.....................................................................................TCAGAGTATTCCAGATTG-CAT.................................................................................................................................................................	21	1	31.00	31	0	0	0	0	25	6	0
.......................................................................................................................................ATACGGTCTGGGACACTTTAA................................................................................................................	21	1	20.00	20	1	0	0	0	18	1	0
.......................................................................................AGAGTATTCCAGATTG-CATAG...............................................................................................................................................................	21	1	17.00	17	0	0	0	0	16	1	0
......................................................................................CAGAGTATTCCAGATTG-CATAGC..............................................................................................................................................................	23	1	17.00	17	0	0	0	0	10	7	0
.......................................................................................................................................ATACGGTCTGGGACACTTTAAA...............................................................................................................	22	1	15.00	15	0	0	0	0	14	1	0
........................................................................................................................................TACGGTCTGGGACACTTTAAA...............................................................................................................	21	1	12.00	12	0	0	0	0	9	3	0
......................................................................................CAGAGTATTCCAGATTG-CAT.................................................................................................................................................................	20	1	11.00	11	0	0	0	0	8	3	0
......................................................................................CAGAGTATTCCAGATTG-CATA................................................................................................................................................................	21	1	9.00	9	0	0	0	0	8	1	0
......................................................................................................................................TATACGGTCTGGGACACTTTAAA...............................................................................................................	23	1	8.00	8	0	0	0	0	7	1	0
.........................................................................................AGTATTCCAGATTG-CATAGCTTT...........................................................................................................................................................	23	1	8.00	8	0	0	0	0	6	2	0
........................................................................................................................................TACGGTCTGGGACACTTTAAAC..............................................................................................................	22	1	7.00	7	0	0	0	0	6	1	0
....................................................................................................................................GCTATACGGTCTGGGACACTTT..................................................................................................................	22	1	6.00	6	0	0	0	0	6	0	0
.....................................................................................TCAGAGTATTCCAGATTG-CATA................................................................................................................................................................	22	1	6.00	6	0	0	0	0	6	0	0
.......................................................................................................................................ATACGGTCTGGGACACTTTA.................................................................................................................	20	1	6.00	6	0	0	0	0	5	1	0
.....................................................................................................................................CTATACGGTCTGGGACACTTT..................................................................................................................	21	1	6.00	6	0	0	0	0	5	1	0
.....................................................................................TCAGAGTATTCCAGATTG-CA..................................................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0	0
......................................................................................CAGAGTATTCCAGATTG-CATAGT..............................................................................................................................................................	23	1	4.00	4	0	0	0	0	4	0	0
......................................................................................................................................TATACGGTCTGGGACACTT...................................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0
......................................................................................CAGAGTATTCCAGATTG-CATAGA..............................................................................................................................................................	23	1	3.00	3	0	0	0	0	2	1	0
.......................................................................................................................................ATACGGTCTGGGACACTTT..................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
......................................................................................................................................TATACGGTCTGGGACACTTTAAT...............................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
........................................................................................................................................TACGGTCTGGGACACTTTA.................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
..................................................................................................................................TTGCTATACGGTCTGGGACAC.....................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
..................................................................................................................................TTGCTATACGGTCTGGGACACT....................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
....................................................................................................................................GCTATACGGTCTGGGACACTT...................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................TTGCTATACGGTCTGGGACACTT...................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................CTATACGGTCTGGGACACTTTT.................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................AGTATTCCAGATTG-CATAG...............................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................TATACGGTCTGGGACACTTTG.................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................ATACGGTCTGGGACACTTTAAAC..............................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................CTATACGGTCTGGGACACTTTA.................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................AGTATTCCAGATTG-CATAGCTTTG--------..................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................AGAGTATTCCAGATTG-CATAGCA.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................TTGCTATACGGTCTGGGACA......................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................TGCTATACGGTCTGGGACACTTT..................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................................................CAGAGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................TACGGTCTGGGACACTTTAA................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................ATTGCTATACGGTCTGGGACACTTT..................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................TACGGTCTGGGACACTTTAAACT.............................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................AGAGTATTCCAGATTG-CATAGCT.............................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................AGAGTATTCCAGATTG-CATAGT..............................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................TCAGAGTATTCCAGATTG-C...................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................TCAGAGTATTCCAGATTG-CATAGC..............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................AGTATTCCAGATTG-CATAGC..............................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................CAGAGTATTCCAGATTG-CATAA...............................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

dpe_48

scaffold_10:2201414-2201481 -

Known Ortholog

Testes-restricted

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.0	-24.4	-24.4