ID:

dpe_476

 Coordinate:

scaffold_0:11043396-11043546 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.3 -29.3 -29.2

Flybase annnotation

exon [dper_GLEANR_6785:1]; CDS [Dper\GL24500-cds]; intron [Dper\GL24500-in]

Repeatable elements

NameClassFamilyStrand
Galileo_DMDNAP-

Sense Strand Reads

-----#############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAAAGCAAATGAAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAATATATATATTATACGGAAAAAGTATTATATGCATATGTAGACATATGTATGTATATCCGTTCGACTGTGTGTGTGTGCGACAGTTTGTATGACGAGGCTCATGCGGTTATTGGACAATGTTCGGGCTAAAAATTTAT
**********************************************************************************...(((.((.(((......))))).)))...(((((((((((..(((((........((((((((((((....))))))))))))..)))))..)).)))))))))..************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V111
male body		 V057
head
 M042
female body
 V042
embryo
..........................AATGTCACAGGTCTAGAGCAGC........................................................................................................................................................................................................... 22 1 1 5.00 5 5 0 0 0 0
..................................................................................TTAGTCGAGTGGTGGGGGAA..................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0
....................AACCAAAATGGCACAGGTCTAGAGCAG............................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0
....................AACCAAAATGGCACAGGTCTAGAGC.............................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0
.............................................................AAATGAAATGTCGTCTGTTGG......................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................CCGTTCGACTGTGTGTGTGT............................................................. 20 0 1 1.00 1 0 0 1 0 0
.......................................................................TCGTCTGTTGGTTGGTCGAGT............................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................................................GACGAGGCTCATGCGGTTATTGGAC...................... 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................TGGTGGGGGAATCCTGGG.............................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
.................................................................................GTTAGTCGAGTGGTGGGT........................................................................................................................................................ 18 1 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................TATGTATGTATATCCGTTCGACT....................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................AAATGGCACAGGTCTAGAGCAGC........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................AAATGGCACAGGTCTAGAGCAGCAA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
..............................................................AATGAAATATCGTCTGTTGGT........................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0
............................TGGCACTGGGCTAGAGCAGCA.......................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0
....................AACCAAAATGGCACAGGTCTAG................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................................................GTATATCCGTTCGACTGTGTGTGTGC............................................................. 26 1 1 1.00 1 1 0 0 0 0
.......................................................................................CGAGTGGTGGGGGAATCCTTC............................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................................TGACAGTTTGAATGACGAGGA....................................... 21 3 2 0.50 1 0 0 0 0 1
............................................................................TGTTGGTTGGTCGAGTGGTGG.......................................................................................................................................................... 21 1 2 0.50 1 0 1 0 0 0
.....................................................................................GTCGAGTTGTTTGGGAATCC.................................................................................................................................................. 20 3 5 0.40 2 0 2 0 0 0
...........................GTGGCACAGGTCTGGAGCA............................................................................................................................................................................................................. 19 2 4 0.25 1 0 1 0 0 0
..................................................................................................................................................................ATGTATATCCGGTCGCCAGT..................................................................... 20 3 5 0.20 1 0 0 1 0 0
.....................................................................................GTCGAGTTGTTGGGGAATGC.................................................................................................................................................. 20 3 13 0.08 1 0 0 1 0 0

Anti-sense strand reads

TATTATACTCATTACGATAATTGGTTTTACCGTGTCCAGATCTCGTCGTTCATTCATTTCGTTTACTTTACAGCAGACAACCAATCAGCTCACCACCCCCTTAGGACCCGCTTTATATATATAATATGCCTTTTTCATAATATACGTATACATCTGTATACATACATATAGGCAAGCTGACACACACACACGCTGTCAAACATACTGCTCCGAGTACGCCAATAACCTGTTACAAGCCCGATTTTTAAATA
*************************************************************...(((.((.(((......))))).)))...(((((((((((..(((((........((((((((((((....))))))))))))..)))))..)).)))))))))..********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
...........................................................CGTTTACTTTACAGCAGACGA........................................................................................................................................................................... 21 1 1 1.00 1 1
.......................GTTTTACCGTGTCCAGATCTC............................................................................................................................................................................................................... 21 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:11043346-11043596 + dpe_476 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA-------------------TATT---------------ATAC---GGAAA-A---AG--------------TATTA-------------------TATGCATATGTAGACA------------------TATGTATGTATATCC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCG------GG--CT------AAAAA------------TTTAT
dp5 2:17205222-17205468 + dps_601 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA-------------------TATT---------------ATAC---GGAAA-A---AG--------------TATTA-------------------TATGCATATGTAGACA--T--A------------TGTAT------ATCC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCG------GG--CT------AAAAA------------TTTAT
droWil2 scf2_1100000004943:8768672-8768793 + ATAATATGAGTAATGCTAT---CCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTGCGA------TT----------------------------------------------------------------------------------------------------AT-------------------------A------------------CATA----------------------------------TAC------------A--T--A------------TATGT------ATGT------------------------------------------GT------GACC----A----TGTATATG--------TG----------------TGT---------------------------------------------------ATG-------G--CT------AGAAA------------TTTAT
droVir3 scaffold_12855:8162773-8163076 + dvi_4447 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGAACTT------GTGTATGTGTGCGTGTGTTTGTGTGTGAATGTAAAATGTGGTGC---------------G-------------GTGCAAAAG-AGGGTATATAATG----------------------------------GAA---GAAAAAAAAACG----------------TAATG--------------GTACA----TT----------T--G------------TGCAT------ATGT-------GTGTTAGCTGTGTCAGCTAAAAGTGGTTCTGTGT-GT------GAGT--------GGCCAT------------G--TGTGAAAGAG----TCGGCGATGCTCATGCGGTCCGCACACGATTATTG--A-----ACAGTG----TTCAGT-GAGGG--CT------CTAACTTTTTTTTTTTTTTTAT
droMoj3 scaffold_6540:23396479-23396769 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---TGTACTTG------TATATGTG------------------AATGTAAAATGTGGTTT---------------G-------------GTGCAAAAT-AGGGTACATAATG-----------------------------------------GAAA-----------------AAAAATGTA----CATTTACCTTTGGTGTATT----TGTG------T--G------------TGTGT------ATGT-------GTGTTAGCTGTGTCAGCTAAAAGTGTGTCTTTGT-G------TGAGT--------GTGCAT------------G--TGTGAAAGAG----TCGGCGATGCTCATGCGGTCTGCACACGATTATTG--A-----ACAGTG----TTCAGTCGAG--TTCTA----AAAAAATT-------TTTTTTAT
droGri2 scaffold_15074:4770948-4771237 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGCGGATACATCCGTGGATGTGAATGTGGATGTCGTTGT---------------------GAATGTTCAAGTGC-------------TACAATAGAAGGGTACATAATGGATAAAA----------A---------------GAAG---AAAAA-AAC-AG----------------TAATGTACATGTAGCGTTGCTACAC------------G--T--G------------TGTGT------GTG--------------------------------------------T------GAGT----GCGTGTGTGT------------GTGTGTGAAAGTG----TCTGTGATGCTCATGTGGT-----------TATATTGTGA---ACACCGATTCTTCACTCGAGGGTTCCACAAAAAAAAA------------TTTAT
droAna3 scaffold_13340:18721716-18721873 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TATGTGTACA--------------------TAT------ATAT-----------------------------------------ATT-GCCATGTGTGTGTG----TGTGTGTGTGTTTGAGTG--------------------TGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCG-------G--CT------AAAAA------------TTTAT
droBip1 scf7180000395652:448726-448875 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TATGTGTACA------------------TATAT------ATAT-----------------------------------------ATT-GCCATGTGT----G------TGTGTG--------TG----------------TGCGTGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCG-------G--CT------AAAAA------------TTTAT
droKik1 scf7180000302690:122139-122315 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGTGAG---A--------------------------------------------------------------------------GGG-GTGG---------------------AAATA-----TACT---------------ACACATGAAAAA-A---AG----------------TAA-------------------TGT----------TCAACTATA------------TGTAT------ATC--------------------------------------------TGAG--TGAGT----G----TGTGT------------G----------------TGTGTG------ATGCGGC-----------TAGTG--G-----ACAATG----TTCG-------G--CT------AAAAA------------TTTAT
droFic1 scf7180000454106:2680440-2680620 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTAATA-A--------------------------------------------------------------------------CTG-GTGA---------------------AAATAT-------------T---------ACATATAGAAA------------------GAAAAACTA-------------------C--------------------T------------TGTAT------ATAC-----------------------------------------AGT------GAGT----GCATG--TGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCG-------G--CT------AGAAA-----------TTTTAT
droEle1 scf7180000491212:1325922-1326109 + ATAATATGAGTAATGCTATCAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATAA-A--------------------------------------------------------------------------GTG-GTGA---------------------AAATACA---TACTACATAT----A-----------------------CATATATATAAGAAAAGTA-------------------CA----------------------------------TAT------ATAC-----------------------------------------AAT------GAGT----GAGTG--CGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTAT
droRho1 scf7180000778820:16948-17127 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATCA-----------------------------------------------------------------------------TA-GTGA---------------------AAATAAA---TAC------T---------A------------------CATATATATAGGAAAAATA-------------------CA----------------------------------TAT------ATAC-----------------------------------------AGT------GAAT----GAGTG--CGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTAT
droBia1 scf7180000302402:7188895-7189115 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGCGA---------------------AAATGCC---------C----------GT-------------------CTTCTATATAGGAAAAGTA-------------------CG----TATGTGTGCACCT--ATGTACATGCACAC----------ACGC---GGGC--------------------------------GA-GT------GAGTAATTGCGTG--CGTGTG--------TG----------------TGCGTGATGCTCATGCGGC-----------TGTTGGGGGAAAAAAAAAG----TTCG-------G--CT------AGAAA------------TTTAT
droTak1 scf7180000415417:547954-548152 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTG-A--------------------------------------------------------------------------CTGGGTGA---------------------AAATACC---------GTCT----ACT--ACAT--AAGAA---------------------AAAGTA-------------------TA----TATGTAC--G--C--A------------TGTAT------ATGC-----------------------------------------AGT------GAGTAAGTGCGTG--CGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTGGGG-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTAT
droEug1 scf7180000409490:239679-239883 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGT-A---------------------AAAAACC-----------TTACCT---AT-------------------CTATTCTATAAGAAAAGTA-------------------CATC--------------C--A--------------TAT------ATACAGTGAGT--------------------------------GG-AT------GAGTGAGTGCGTG--CGTGTG------TGTG----------------TAAGTGATGCTCATGCGGC-----------TATTCGGG-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTAT
dm3 chr3R:4485548-4485734 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACC---------ATTT----AC----------------------CATCTATATAAGAATGGAA-------------------CAC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTAT
droSim2 3r:16503986-16504172 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACC---------ATTT----AC----------------------CATGTATATAAGAATGGAA-------------------CCC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTAT
droSec2 scaffold_0:17367841-17368033 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACCATGTAC--CATTT----AC----------------------CATGTATATAAGAATGGAA-------------------CAC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------TTCGTGATGCTCATGCGGC-----------TTTT---G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTAT
droYak3 3R:8548417-8548616 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGTAGCGTTTTTT-A--------------------------------------------------------------------------CTG-GTGA---------------------AATTACC---------ATTT----AC----------------------CATGTATATAAGAATAGTA-------------------TATGCATATGTGTG----T--A------------TGTAT------ATAC-----------------------------------------GAT------GAGT----GCCT----GTGTG--------TG----------------TGCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTAT
droEre2 scaffold_4770:17100693-17100884 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------ATG-GTGA---------------------AAATACC---------ATTT----AC----------------------CATGTACATAAGAATGGTA-------------------TATGCATATGTG----------------------TGTGT------ATGT-------AC--------------------------------GGT------GAGT----GCGTG--CGTGTG--------TG----------------TGCATTATGCTCATGCGGC-----------T------------AAAATG----TTCG-------C--CT------AGAAA------------TTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA-------------------TATT---------------ATAC---GGAAA-A---AG--------------TATTA-------------------TATGCATATGTAGACA------------------TATGTATGTATATCC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCG------GG--CT------AAAAA------------TTTATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................TTAGTCGAGTGGTGGGGGAA........................................................................................................................................................................................................................................................................................................................................................................2012.002000002
....................AACCAAAATGGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
....................AACCAAAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
................................................................AAATG--------------------------------------AAATGTCGTCTGTTGG............................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................................CC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGT..............................................................................................................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGCTCATGCGGT-----------TATTG--G-----AC....................................................2511.001100000
....................................................................................................................................TGGTGGGGGAATCCTGGG.................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..........................................................................................................................GTTAGTCGAGTGGTGGGT...........................................................................................................................................................................................................................................................................................................................................................................1811.001000001
......................................................................................................................................................................................................................................................................................................TATGTATGTATATCC-----------------------------------------GTT-----CGACT----........................................................................................................................................2311.001100000
.........................AAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................AAATGGCACAGGTCTAGAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................AACCAAAATGGCACAGGTCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.............................................................................................................................................................................................................................................................................................................GTATATCC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGC..............................................................................................................2611.001100000
................................................................................................................................CGAGTGGTGGGGGAATCCTTC..................................................................................................................................................................................................................................................................................................................................................................2111.001000001
dp5
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA-------------------TATT---------------ATAC---GGAAA-A---AG--------------TATTA-------------------TATGCATATGTAGACA--T--A------------TGTAT------ATCC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCG------GG--CT------AAAAA------------TTTATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTG--G-----ACAATG----TTCG------GG--C.............................1912.0020000000020
....................................................................................................................................................................................................................................................................TATGCATATGTAGACA--T--A------------TGTA.............................................................................................................................................................................................................2211.0010100000000
...................TAACCAAAATGGCACAGGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................TTGGTTAGTCGAGTGGTGGG............................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................TGGCACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.................ATTAACCAAAATGGCACAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................TAACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
...................................................................................................................................................................................................................................................................................................................CC-----------------------------------------GTT-----CGACT----G----TGTGT------------GTGTG.............................................................................................................2111.0010100000000
...................................................................TG--------------------------------------AAATGTCGTCTGTTGGTT..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................ATTA-------------------TATGCATATGTAGAC....................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTA-TGACGAGGCTCATG..................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TATTG--G-----ACAATG----TTCG------GG--C.............................2011.0010000000010
.................ATTAACCAAAATGGCACAGGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................AATGGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
....................AACCAAAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
................TATTAACCAAAATGGCACAGGTCTAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................AAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...................................................................TG--------------------------------------AAATGTCGTCTGTTGGT...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.....................ACCAAAATGGCACAGGTCTAGAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
.......................................................................................................................TTGGTTAGTCGAGTGGTGG.............................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droWil2
ATAATATGAGTAATGCTAT---CCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTGCGA------TT----------------------------------------------------------------------------------------------------AT-------------------------A------------------CATA----------------------------------TAC------------A--T--A------------TATGT------ATGT------------------------------------------GT------GACC----A----TGTATATG--------TG----------------TGT---------------------------------------------------ATG-------G--CT------AGAAA------------TTTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................AT---CCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300030
.............................GGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.................AT---CCAAAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
..........................AATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
.......................CAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
.............................GGCACAGGTCTAGAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........................AAATGGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
....................................GTCTAGAGCAGCAAGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
..........................................AGCAGCAAGTAAGTAG---AGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
........................AAAATGGCACAGGTCTAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................TAT---CCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
........................AAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..................................................................................................................................................................................................................................................................................................................TGT------------------------------------------GT------GACC----A----TGTATATG--------TG----------------T................................................................................................2111.00100001
................................ACAGGTCTAGAGCAGCAAGTAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................CCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.......................................................................................................................................................................................................................................................................................................................................................................GACC----A----TGTATATG--------TG----------------TGT---------------------------------------------------...........................................1811.00100010
..............................GCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGAACTT------GTGTATGTGTGCGTGTGTTTGTGTGTGAATGTAAAATGTGGTGC---------------G-------------GTGCAAAAG-AGGGTATATAATG----------------------------------GAA---GAAAAAAAAACG----------------TAATG--------------GTACA----TT----------T--G------------TGCAT------ATGT-------GTGTTAGCTGTGTCAGCTAAAAGTGGTTCTGTGT-GT------GAGT--------GGCCAT------------G--TGTGAAAGAG----TCGGCGATGCTCATGCGGTCCGCACACGATTATTG--A-----ACAGTG----TTCAGT-GAGGG--CT------CTAACTTTTTTTTTTTTTTTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................ATGGCACAGGTCTAGAGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................GGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...................TAACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..............................GCACAGGTCTAGAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
.............................GGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----ACAGTG----TTCAGT-GAGGG--CT------......................2011.001010000000000000000000000000000000000000000000000000000000000000
..................TTAACCAAAATGGCACAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GTCAGCTAAAAGTGGTTCTGTC..........................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GGCCAT------------G--TGTGAAAGAG----TCGG.............................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................ACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................T-GT------GAGT--------GGCCAT------------G--TGTGAAA........................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
...................TAACCAAAATGGCACAGGTCTAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.................ATTAACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................ATGTAAAATGTGGTGC---------------G-------------GTGC................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.................................CAGGTCTAGAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTG----TTCAGT-GAGGG--C.............................1811.001010000000000000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCAAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
.......................CAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGATGCTCATGCGGTCCGCACA.......................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
..............................GCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
....................AACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GGCCAT------------G--TGTGAAAGAG----TCGGC............................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGCAAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
....................AACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................TGCGTGTGTTTGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000010000000000001000000000000000000000000000000000000000
............................................................................GTATGTGTGCGTGTGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................18120.081000000000100000000000000000000000000000000000000000000000000000
droMoj3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---TGTACTTG------TATATGTG------------------AATGTAAAATGTGGTTT---------------G-------------GTGCAAAAT-AGGGTACATAATG-----------------------------------------GAAA-----------------AAAAATGTA----CATTTACCTTTGGTGTATT----TGTG------T--G------------TGTGT------ATGT-------GTGTTAGCTGTGTCAGCTAAAAGTGTGTCTTTGT-G------TGAGT--------GTGCAT------------G--TGTGAAAGAG----TCGGCGATGCTCATGCGGTCTGCACACGATTATTG--A-----ACAGTG----TTCAGTCGAG--TTCTA----AAAAAATT-------TTTTTTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............GCTATTAACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
............................TGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................GGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................ATTAACCAAAATGGCACAGGTCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
................TATTAACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
........................AAAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................ATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGCGGATACATCCGTGGATGTGAATGTGGATGTCGTTGT---------------------GAATGTTCAAGTGC-------------TACAATAGAAGGGTACATAATGGATAAAA----------A---------------GAAG---AAAAA-AAC-AG----------------TAATGTACATGTAGCGTTGCTACAC------------G--T--G------------TGTGT------GTG--------------------------------------------T------GAGT----GCGTGTGTGT------------GTGTGTGAAAGTG----TCTGTGATGCTCATGTGGT-----------TATATTGTGA---ACACCGATTCTTCACTCGAGGGTTCCACAAAAAAAAA------------TTTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................GTTCAAGTGC-------------TACAATAGAAGG.......................................................................................................................................................................................................................................................................................................................................................2211.00110
.........................AAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
.......................CAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..............................GCACAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
..........................AATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droAna3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TATGTGTACA--------------------TAT------ATAT-----------------------------------------ATT-GCCATGTGTGTGTG----TGTGTGTGTGTTTGAGTG--------------------TGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCG-------G--CT------AAAAA------------TTTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGGC-----------TGTTG--G-----AGAGTG----T...........................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGC-----------TGTTG--G-----AGAGTG----TTCG-------G--C.............................2111.001000001
.....................ACCAAAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
................TATTAACCAAAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGC-----------TGTTG--G-----AGAGTG----TTCG-------.................................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGAGTG--------------------TGAGTGACAT...................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGAGTG--------------------TGAGTGACA....................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCGGC-----------TGTTG--G-----AGA...................................................1911.001000010
....................................................................................................................................................................................................................................................................................................................................................................CATGTGTGTGTG----TGTGTG.............................................................................................................................18200.051000001
droBip1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TATGTGTACA------------------TATAT------ATAT-----------------------------------------ATT-GCCATGTGT----G------TGTGTG--------TG----------------TGCGTGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCG-------G--CT------AAAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
droKik1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGTGAG---A--------------------------------------------------------------------------GGG-GTGG---------------------AAATA-----TACT---------------ACACATGAAAAA-A---AG----------------TAA-------------------TGT----------TCAACTATA------------TGTAT------ATC--------------------------------------------TGAG--TGAGT----G----TGTGT------------G----------------TGTGTG------ATGCGGC-----------TAGTG--G-----ACAATG----TTCG-------G--CT------AAAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
droFic1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTAATA-A--------------------------------------------------------------------------CTG-GTGA---------------------AAATAT-------------T---------ACATATAGAAA------------------GAAAAACTA-------------------C--------------------T------------TGTAT------ATAC-----------------------------------------AGT------GAGT----GCATG--TGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCG-------G--CT------AGAAA-----------TTTTATSizeHit CountTotal NormTotal
No Reads
droEle1
ATAATATGAGTAATGCTATCAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATAA-A--------------------------------------------------------------------------GTG-GTGA---------------------AAATACA---TACTACATAT----A-----------------------CATATATATAAGAAAAGTA-------------------CA----------------------------------TAT------ATAC-----------------------------------------AAT------GAGT----GAGTG--CGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
droRho1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATCA-----------------------------------------------------------------------------TA-GTGA---------------------AAATAAA---TAC------T---------A------------------CATATATATAGGAAAAATA-------------------CA----------------------------------TAT------ATAC-----------------------------------------AGT------GAAT----GAGTG--CGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
droBia1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGCGA---------------------AAATGCC---------C----------GT-------------------CTTCTATATAGGAAAAGTA-------------------CG----TATGTGTGCACCT--ATGTACATGCACAC----------ACGC---GGGC--------------------------------GA-GT------GAGTAATTGCGTG--CGTGTG--------TG----------------TGCGTGATGCTCATGCGGC-----------TGTTGGGGGAAAAAAAAAG----TTCG-------G--CT------AGAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
droTak1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTG-A--------------------------------------------------------------------------CTGGGTGA---------------------AAATACC---------GTCT----ACT--ACAT--AAGAA---------------------AAAGTA-------------------TA----TATGTAC--G--C--A------------TGTAT------ATGC-----------------------------------------AGT------GAGTAAGTGCGTG--CGTGTG--------TG----------------TGAGTGATGCTCATGCGGC-----------TATTGGGG-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
droEug1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGT-A---------------------AAAAACC-----------TTACCT---AT-------------------CTATTCTATAAGAAAAGTA-------------------CATC--------------C--A--------------TAT------ATACAGTGAGT--------------------------------GG-AT------GAGTGAGTGCGTG--CGTGTG------TGTG----------------TAAGTGATGCTCATGCGGC-----------TATTCGGG-----AAAAAG----TTCG-------G--CT------AGAAA------------TTTATSizeHit CountTotal NormTotal
No Reads
dm3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACC---------ATTT----AC----------------------CATCTATATAAGAATGGAA-------------------CAC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................AATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000
....................AACCAAAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................28113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................AAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000001001000000020000000000000000000001000000
..............................GCACAGGTCTAGAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000
.............................GGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..........................................................................................................................................................................................................................................AATGGAA-------------------CAC------------G--C--A------------TGTGT------ATG...................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000010000
...................TAACCAAAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000010000000000000000000000000000
..............................GCACAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................AAATGGCACAGGTCTAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................AAAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
..........................AATGGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010
.................................................AGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-..................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000010000
...............CTATTAACCAAAATGGCACAGGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................GAA-------------------CAC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG--------TG----------------TTCGTGATGCT......................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
..................................................................TTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACC---------ATT......................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACAGGTCTAGAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................ACAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000
......................CCAAAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------.................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000
....................AACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................TAACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCAAGTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000
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droSim2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACC---------ATTT----AC----------------------CATGTATATAAGAATGGAA-------------------CCC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................ACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
.................................CAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000200000000000
.........................AAATGGCACAGGTCTAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
............................TGGCACAGGTCTAGAGCAGCAAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...............................CACAGGTCTAGAGCAGCAAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................G----------------TTCGTGATGCTCATGCGG...............................................................................1911.00100001000000000000
.................................CAGGTCTAGAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................TATTAACCAAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................TTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACC---------.........................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....ATGAGTAATGCTATTAACCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GTGTG--------TG----------------TTCGTGATGCTCAT...................................................................................2111.00100001000000000000
.................................CAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..........................AATGGCACAGGTCTAGAGCAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
................................................................................................................................................................................................................................TGTATATAAGAATGGAA-------------------CCC------------G--.................................................................................................................................................................................................................................2111.00101000000000000000
..............................GCACAGGTCTAGAGCAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...................................................................................................................................................................................................................................................................................................................GC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------T................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................TGTG--------TG----------------TTCGTGATGCTCA....................................................................................1911.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGCGGC-----------TATTT--G-----AAAAAG----............................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................GCT----G----TGTGTGTG--------TG----------------TTCGTGA..........................................................................................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................G--------TG----------------TTCGTGATGCTCATG..................................................................................1811.00110000000000000000
..................................AGGTCTAGAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...........................ATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
....................................................AAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTG...............................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................CACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................TGGCACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................GCT----G----TGTGTGTG--------TG----------------TT...............................................................................................16200.05100000000001000000
droSec2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGA---------------------AAATACCATGTAC--CATTT----AC----------------------CATGTATATAAGAATGGAA-------------------CAC------------G--C--A------------TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTGTGTG--------TG----------------TTCGTGATGCTCATGCGGC-----------TTTT---G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................GGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
......................................................................................................................................................................................................................................................................................................TGTGT------ATGC-----------------------------------------GGT------GGCT----G----TGTG...............................................................................................................................2111.0010100
........................................................................................................................................................................................................................................................................................................................................................................................TGTG--------TG----------------TTCGTGATGCTCATGT.................................................................................2211.0010001
.....................................................................................................................................................................................................................................ATAAGAATGGAA-------------------CAC------------G--C--A------------TGT..............................................................................................................................................................................................................2111.0010100
.................................................................................................................................................................................................................................GTATATAAGAATGGAA-------------------CAC------------G--C--..............................................................................................................................................................................................................................2111.0010001
................TATTAACCAAAATGGCACAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
............................TGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
................................................................................................................................................................................................................................................................................................................................................................T------GGCT----G----TGTGTGTG--------TG----------------TTCGT............................................................................................2111.0010100
..............................GCACAGGTCTAGAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................AATGGCACAGGTCTAGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTCATGCGGC-----------TTTT---G-----......................................................2111.0010001
........................AAAATGGCACAGGTCTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
........................................................................................................................................................................................................................................................................................................................................................................................TGTG--------TG----------------TTCGTGATGCTCATG..................................................................................2111.0010001
..............................................................................................................................................................................................ATTT----AC----------------------CATGTATATAAGAAT..........................................................................................................................................................................................................................................................................2111.0011000
...........................................................................................................................................................................................................................................ATGGAA-------------------CAC------------G--C--A------------TGTGT------ATGC-----------------------------------------.........................................................................................................................................................2111.0010001
..........................AATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................TAACCAAAATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
.......................................TAGAGCAGCAAGTAAGTAG---CG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...............................................................................................................................................................................................TTT----AC----------------------CATGTATATAAGAATG.........................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................GTGTG--------TG----------------TTCGTGATGCTCA....................................................................................2011.0010100
droYak3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGTAGCGTTTTTT-A--------------------------------------------------------------------------CTG-GTGA---------------------AATTACC---------ATTT----AC----------------------CATGTATATAAGAATAGTA-------------------TATGCATATGTGTG----T--A------------TGTAT------ATAC-----------------------------------------GAT------GAGT----GCCT----GTGTG--------TG----------------TGCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCG-------C--CT------AGAAA------------TTTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................AACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
...................TAACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000
.................................................................................................................................................................................................................................................................................G----T--A------------TGTAT------ATAC-----------------------------------------GAT------GAGT----GCC.....................................................................................................................................2211.00100100000000
.............................GGCACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................CCAAAATGGCACAGGTCTAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................AATGGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................GGCACAGGTCTAGAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................AATGGCACAGGTCTAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..............................GCACAGGTCTAGAGCAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................AATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................GAT------GAGT----GCCT----GTGTG--------TG----------------TGC..............................................................................................2111.00100010000000
......................................................GTAGTAGCGTTTTTT-A--------------------------------------------------------------------------CTG-GT................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............GCTATTAACCAAAATGGCACAGGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.................................................................................................................................................................................................................................................................................................................ATAC-----------------------------------------GAT------GAGT----GCCT----GTGTG--------T..................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................AC-----------------------------------------GAT------GAGT----GCCT----GTGTG--------TG----------------TGCGT............................................................................................2511.00100000010000
.........................AAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................ATTAACCAAAATGGCACAGGTCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------ATG-GTGA---------------------AAATACC---------ATTT----AC----------------------CATGTACATAAGAATGGTA-------------------TATGCATATGTG----------------------TGTGT------ATGT-------AC--------------------------------GGT------GAGT----GCGTG--CGTGTG--------TG----------------TGCATTATGCTCATGCGGC-----------T------------AAAATG----TTCG-------C--CT------AGAAA------------TTTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................AACCAAAATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000110
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCATGCGGC-----------T------------AAAATG----TTCG-------.................................2311.0010000010
....................................GTCTAGAGCAGCAAGTAAGTAG---CGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..........................................................................................................................................................................................................................................................................TATGTG----------------------TGTGT------ATGT-------AC--------------------------------GG.......................................................................................................................................................1911.0010000100
...............................................................................................................................................................................................................................................................................G----------------------TGTGT------ATGT-------AC--------------------------------GGT------GAGT----GC......................................................................................................................................2111.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................GT----GCGTG--CGTGTG--------TG----------------TGCATTATGCTC.....................................................................................2711.0010100000
...........................ATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..................................................GTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------ATG-G.................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................AATGGCACAGGTCTAGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................................................................................................................................................................................................................T------GAGT----GCGTG--CGTGTG--------TG----------------TT...............................................................................................20140.0710000010

Generated: 06/08/2015 at 02:43 PM