ID:

dpe_447

 Coordinate:

scaffold_0:9193521-9193671 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dper_GLEANR_6676:5]; CDS [Dper\CtBP-cds]; intron [Dper\CtBP-in]

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+
A-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGAGAGAAACAACAGACAGGCGAGAGAGCGAGAGAGGAGAGAGAAAGAGAGAGAGAGAGCGTTATTAAAACAAGTAAAACAACAAAACAAAAAACAAAAACAAAACAAAAACAGAACAAGAATCAATTCAATACAGATACCAGAAATCGTTTAAGAACATCATTTACT
****************************************************************************..........................((......))....................*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042
embryo
 M042
female body
 V111
male body		 V057
head
...................................................................................................................................GAGAGAGAGAGCGATATTAAA................................................................................................... 21 1 1 1.00 1 0 0 0 1
..............................GGCGGCTGTTTATTCCGAAGGAGA..................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0
......................................................................................................................................................................ACAACAAAAAACAAAAACACAACAAAAACACAACAA................................................. 36 3 1 1.00 1 0 0 0 1
............................GCGGCGGCTGTTTATCCCGA........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
............................................................................GAAAAGTAGAGAGAAACAACA.......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.............................................................ATGATATCAAATCAAGAAAAGTAGAGA................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
....................................................................................................AGGCGAGAGAGCGAGAGA..................................................................................................................................... 18 0 1 1.00 1 0 1 0 0
...........................................................................................................AGAGCGAGAGAGGAGAGAGAAAGAG....................................................................................................................... 25 0 1 1.00 1 0 0 1 0
....................GTGGCGTTGCGGCGGCTGT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0
.................................................................................................................AGAGAGGAGAGAGAAAGAGA...................................................................................................................... 20 0 1 1.00 1 0 0 1 0
...............................................................................................................................................................................................................AATTCAATACAGATACCAGA........................ 20 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................ACCAGAAATCGTTTAAGAACATCAT..... 25 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................ATTCAATACAGATACCAGA........................ 19 0 1 1.00 1 1 0 0 0
..............................................................................................................GCGAGAGAGGAGAGAGAAAG......................................................................................................................... 20 0 1 1.00 1 0 0 1 0
......................................................................................................................................................................AACACAAAAAAAAAAAACAAAACAAAAACAAAACA.................................................. 35 3 2 0.50 1 0 0 0 1
...........................................................................................................................................................................AAAAAACAAGAACAAAACA............................................................. 19 1 20 0.05 1 0 1 0 0
...........................................................................................................................GAGAAAGAGAGAGAGAGAGC............................................................................................................ 20 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CGGCGGGTGGCGACGCCGGCCACCGCAACGCCGCCGACAAATAGGGCTTCCATTTGATGTTTACTATAGTTTAGTTCTTTTCATCTCTCTTTGTTGTCTGTCCGCTCTCTCGCTCTCTCCTCTCTCTTTCTCTCTCTCTCTCGCAATAATTTTGTTCATTTTGTTGTTTTGTTTTTTGTTTTTGTTTTGTTTTTGTCTTGTTCTTAGTTAAGTTATGTCTATGGTCTTTAGCAAATTCTTGTAGTAAATGA
***********************************************************************************************************************..........................((......))....................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V057
head
 V050
head
 M021
embryo
 V042
embryo
.....................................CAAATAGGGCTTCAATGTG................................................................................................................................................................................................... 19 2 1 1062.00 1062 737 287 33 3 2 0
....................................GCAAATAGGGCTTCAATGTG................................................................................................................................................................................................... 20 3 2 250.50 501 318 158 24 1 0 0
......................................AAATAGGGCTTCAATGTG................................................................................................................................................................................................... 18 2 2 58.00 116 11 57 46 2 0 0
.....................................CAAATAGGGCTTCAATGTGC.................................................................................................................................................................................................. 20 3 4 17.25 69 41 24 3 1 0 0
......................................AAATAGGGCTTCAATGTGC.................................................................................................................................................................................................. 19 3 8 6.63 53 25 18 9 1 0 0
.....................................CAAATAGGGCTTCAATGT.................................................................................................................................................................................................... 18 2 5 4.40 22 3 18 1 0 0 0
.....................................CAAATAGGGCTTCAATGTGCT................................................................................................................................................................................................. 21 3 3 3.67 11 4 6 1 0 0 0
....................................GCAAATAGGGCTTCAATGT.................................................................................................................................................................................................... 19 3 13 1.62 21 3 18 0 0 0 0
......................................AAATAGGGCTTCAATGTGCT................................................................................................................................................................................................. 20 3 5 1.40 7 1 6 0 0 0 0
......................................AAATAGGGCTTCAATTTG................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0
.....................................CAAATAGGGCTTCAATGTGA.................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.....................................CAAATAGGGCTTCAATCTG................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0
...................................GGCAAATAGGGCTTCAATGTG................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.....................................CAAATAGGGCTTCGATGTG................................................................................................................................................................................................... 19 2 3 0.67 2 1 1 0 0 0 0
....................................GCAAATAGGGCTTCAATTT.................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0
...................................................................................................................TATCCTCTCTCTTTTTCTCTCT.................................................................................................................. 22 2 10 0.50 5 0 5 0 0 0 0
...................................GCCAAATAGGGCTTCAATGT.................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0
.....................................CAAATAGTGCTTCAATGTG................................................................................................................................................................................................... 19 3 12 0.42 5 2 0 3 0 0 0
....................................CCAAATAGGGCTTCAATGTG................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0
.....................................CAAATAGGGCTTCAATGTGG.................................................................................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0
.......TGGCGACACCGGCCGGCGCAA............................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0
.................................................................................................................TCTCTCCTCTCTTTTTCTCACT.................................................................................................................... 22 2 5 0.20 1 0 0 0 0 0 1
.....................................CAAATAGGGCTGCAATGTG................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 1 0 0 0
...................................................................................................................TCTCCTCTCTCTTTCTCTGACT.................................................................................................................. 22 2 7 0.14 1 0 0 1 0 0 0
...................................................................................................................TCTCCTCTCTCTTTTTCTGTCT.................................................................................................................. 22 2 7 0.14 1 0 0 1 0 0 0
....................................GCAAATAGGGCTTCCATAAG................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
.....................................CAAATGGGGCTTCAATGTG................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 1 0 0 0
...................................GGCAAATAGGGCTTCAATG..................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0
.....................................CAGATAGGGCTTCAATGTG................................................................................................................................................................................................... 19 3 20 0.10 2 1 1 0 0 0 0
...................................................................................................................................................................................................................................TTAGCAAATTGTTGTGTTAAA... 21 3 11 0.09 1 0 0 1 0 0 0
..................................................................................................................CTCTCCTCTCTCTTTTTCTGCCT.................................................................................................................. 23 3 12 0.08 1 0 0 0 0 0 1
....................................GCAAATAGGGCTTCAATCT.................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0
...................................................................................................................TCTCCTCTCTCTTTTTCTCACT.................................................................................................................. 22 2 13 0.08 1 0 0 0 1 0 0
...................................................................................................................TCTCCTCTCTCTTTTTCACTAT.................................................................................................................. 22 3 14 0.07 1 0 0 1 0 0 0
.....................................CAAATAGCGCTTCAATCTG................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 1 0 0 0
...................................................................................................................TATCCTCTCTCTTTTTCTCTC................................................................................................................... 21 2 14 0.07 1 0 1 0 0 0 0
.....................................CAAATACGGCTTCAATGTG................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0
.....................................CAAATTGGGCTTCAATGTG................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 1 0 0 0
.....................................CAAATAGGGATTCAATGTG................................................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0
........................TCAACGCGGCCGGCAAATA................................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 1
...................................................................................................................TATCCTCTCTCTTTTTCACTCT.................................................................................................................. 22 3 20 0.05 1 0 0 1 0 0 0
.....................................CAAATAGGACTTCAATGTG................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
.................................................................................................................TCTCCCCTCTCTCTTTCACTAT.................................................................................................................... 22 3 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:9193471-9193721 + dpe_447 GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAA---AGAGAGAG-AGA--G-AGCGTTATTAAAACA-AGTAAAACAAC--------------AAA-ACAAAAAACA--AAA------------------------------------------------------------------------------------ACA-------AAACAA--AAACAGAACAAGA-ATCA-------------------------ATTCAATACAG-ATACCAGA-AATCGTTTAAG----AACA-TCA---------TT--------------TACT
dp5 2:11322244-11322494 - dps_473 GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAAGAGAGAAAGAG-AGA--G-AGCGTTATTA---CA-AGTAAAACAAC--------------AAA-ACAAAAAACA--AAA------------------------------------------------------------------------------------ACA-------AAACAA--AAACAGAACAAGA-ATCA-------------------------ATTCAATACAG-ATACCAGA-AATCGTTTAAG----AACA-TCA---------TT--------------TACT
droWil2 scf2_1100000004902:11583881-11584091 + dwi_2620 GCCGCAAACCGCTGCGGCTGGTGGCGTAGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGTGAAACAAC--------------AAA-ACA-------------------------------------------------------------------------------------------------------------------------------------------------AAG-CAAAAACAATTTAAT--A--ATAACAGAAAATCGTTTAAA----CACA-CCGCAGACATACTTTATATATATATATATACT
droVir3 scaffold_12855:3968595-3968798 - dvi_3819 GCCGCCAACCACTGCGGCCGGAGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAGGAGGCTTA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAAC--------------ATA-ACAAAAA----------GAAA-------------------------------------------------------------AAAGAG----A---AAAACA---TTAAAAACAA------AAAACCAGA-A-------------------------ACAGTA----ACAG-AAATCAGA-AATCGTTTAA------------------------------------------
droMoj3 scaffold_6540:8275852-8276078 - GCCGCCAACCACTGCAGCCGGTGGAGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGGGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAAC--------------ATA-ACAAAAGAAA-----AAGAAAA---AAAAGAAGAAA----AA------------------------------------------GGAA----ATTAAAAACAAAATTCGAAACAA------AAAACCAGA-A-------------------------ACAGTA----ACAG-AAATCAGA-AATCGTTTAA------------------------------------------
droGri2 scaffold_14906:6589757-6589961 - GCCGCCAACCACTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGCGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAAC--------------ATA-ACAAACAAAA--AAA------------------------------------------------------------------------------------GAA-------ATACAAAAAAACAAAACCAGA-A-----------------------------------ACA--GTAACAGA-AATCGTTTAAA----TACAATCA---------TA--------------AAC-
droAna3 scaffold_13340:9333003-9333240 - dan_2989 GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAC-AAA--------------AAA-AAAAA----------ACAAAGCAAAAAAAAAAAAAT----AC------------------------------------------TGAA----A---------------------A--AAAAA---ACAAAAATCAACAA---------AAG-CATAAA-----CAATACA--ATACCAGA-AGTCGTTTAAA----CACA-T---------ACTTT------------ATACT
droBip1 scf7180000396712:2953986-2954250 - GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAGAGA---GACAGAGAGACAG--GCGAG--CA----A------------------------AAAGGGAGAAGCGTTATTA---CAAAGTAAAAAAAAACAAAATATACAAAAAA-AAAAA--ACAAA---A---AGCTAAA--------CTAAAAACTGAAACAAAC-------------------------------------------------------------------------------AGCAACAA----AA---AAGACATAAA-----CAATACAA-ATACCAGA-AGTCGTTTAAA----CACA-T---------ACTTTAT----------ATACT
droKik1 scf7180000302634:816909-817162 + GCCGCCGACCGCTGCCGCCGGTGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGACAGAGAGAGA---AACAGAGAGACAG--GCGAG--CA----A------------------------GAAGG--G-AGCGTTATAA---CA-AGAAAAACAAA----------------------A----------TAGAAACA------------------------------AAACAAAACA-----------------ATTA--------A---------------------A--AAACA---AAAGAAATCAACCAACAAAA-CCGAG-CAAAAACCATTTAATACA--ATACCAGA-AATCGTTTAAA----C--C-ACA----CACACAT--------------TACT
droFic1 scf7180000453800:1310644-1310876 + GCCGCCTGCCGCTGCCGCCGCGGGCGTGGCGACGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA--AC--------------AAA-ACAAA----------TCGAAACA------------------------------AAA--------TACAAAAAATACAACAAAAA-AAA----A---------------------A--AACCA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATGCA--ATACCAGA-AATCGTTTA-------------------------------------------
droEle1 scf7180000486474:145198-145452 + GCCGCCTGCCGCTACCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAAACAAAAA-----AAAAA-ACAAA----------ACGAAACA--------------------------AAC---------------AA----------------GAA----AAAAAAAACAAAC----AAACAA--AAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTTAAA----CACC-C--------------------------ATACT
droRho1 scf7180000778053:58892-59101 + GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACA-----------------AA-ACAAT----------ACGAAACA--------------------------AAC---------------AA-----------------------A---------------------A--AAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTT--------------------------------------------
droBia1 scf7180000299102:1106463-1106689 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCCGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GGAAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AAC--------------AAAAACA----------------------------------------------AAC---------------AA---------AAATTA--AAAACCA---------------------A--GAACA---TAAGAAATCAACCTACAAAATCCAAG-CAAA---------ATACA--ATACCAGA-AATCGTTTAAA----CACA-----------------------------TACT
droTak1 scf7180000415653:15387-15625 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTA---------AGTAAAA-AAC--------------AAA-ACAAA----------ATGAAACA--------------------------AACAAAACAAAACAATACAA---------AAAA----------A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--GTACCAGA-AATCGTTTAAA----CACA-C--------------------------ATACT
droEug1 scf7180000409802:1179935-1180158 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AAC--------------AAA-ACAAA--ACA--AAATCGAAAA----------------------------------------------------------------------A---------------------A--AAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACAAAATACCAGA-AATCGTTTAAA----CACA-C-------------------------------
dm3 chr3R:8847315-8847549 + GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AAA--------------AAA-ACAAA----------TCGAAACA------------------------------AAACAAAAC-----AA---------AAAATATGAG----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------
droSim2 3r:12317674-12317904 - dsi_28862 GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAA--------------AAA-ACAAA----------TCGAAACA------------------------------AAA----------CAA---------AAAATATGAG----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------
droSec2 scaffold_0:13149032-13149262 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAA--------------AAA-ACAAA----------TCGAAACA------------------------------AAA----------CAA---------AAAATATGAG----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------
droYak3 3R:13142551-13142778 + GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACA-----------------AA-ACAAA----------TCGAAACA---------------------------------------------A---------AAATTATGAA----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA---------------ATACCAGA-AATCGTTTAAAAAAACACA-C--------------------------ATACT
droEre2 scaffold_4770:12801262-12801493 - der_612 GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AACGTTATTA---CA-AGTAAAATA-A--------------AAA-ACAAA----------TCGAAACA------------------------------AAACAAAACA-----A---------CAAATATGAA----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAA----A------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAA---AGAGAGAG-AGA--G-AGCGTTATTAAAACA-AGTAAAACAAC--------------AAA-ACAAAAAACA--AAA------------------------------------------------------------------------------------ACA-------AAACAA--AAACAGAACAAGA-ATCA-------------------------ATTCAATACAG-ATACCAGA-AATCGTTTAAG----AACA-TCA---------TT--------------TACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................GCGGCGGCTGTTTATCCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................GAAAAGTAG--AGAGAAACAACA....................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................ATGATATCAAATCAAGAAAAGTAG--AGA.............................................................................................................................................................................................................................................................................................................................................................2711.001001000
......................................................................................................A--------G--GCGAG--AGAGCGAGAGA...................................................................................................................................................................................................................................................................................................................1811.001010000
.........................................................................................................................AGAGCGAGAGAGGAGAGAGAA---AGAG..................................................................................................................................................................................................................................................................................................2511.001000001
....................GTGGCGTTGCGGCGGCTGT................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................AGAGAGGAGAGAGAA---AGAGA.................................................................................................................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................A-------------------------ATTCAATACAG-ATACCAGA-....................................................2011.001001000
............................................................................................................................................................................................................................................................................................................................................................................................ACCAGA-AATCGTTTAAG----AACA-TCA---------T...................2511.001001000
..............................................................................................................................................................................................................................................................................................................................................................................ATTCAATACAG-ATACCAGA-....................................................1911.001001000
............................................................................................................................GCGAGAGAGGAGAGAGAA---AG....................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................GAGAA---AGAGAGAG-AGA--G-AGC...................................................................................................................................................................................................................................................................................20200.051001000
dp5
GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAAGAGAGAAAGAG-AGA--G-AGCGTTATTA---CA-AGTAAAACAAC--------------AAA-ACAAAAAACA--AAA------------------------------------------------------------------------------------ACA-------AAACAA--AAACAGAACAAGA-ATCA-------------------------ATTCAATACAG-ATACCAGA-AATCGTTTAAG----AACA-TCA---------TT--------------TACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........GCTGCGGCCGGTGGCGTTGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
...............GGCCGGTGGCGTTGCGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................GCTGTTTATCCCGAAGGTAAACTACA...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................ACCAGA-AATCGTTTAAG----AACA-................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................CCAGA-AATCGTTTAAG----AACA-TCA---------T...................2411.0010100000000
...............................................................................AAGTAG--AGAGAAACAACAGACA--------G--GC...................................................................................................................................................................................................................................................................................................................................2511.0010000000001
................................................................................................................................................................................................................................................................................................................................A--AAACAGAACAAGA-ATCA-------------------------AT.......................................................................2011.0010100000000
.........CGCTGCGGCCGGTGGCGTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
................GCCGGTGGCGTTGCGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................CA-------------------------ATTCAATACAG-ATACCAGA-AAT.................................................2411.0010010000000
..........................................................................AAGAAAAGTAG--AGAGAAAC........................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.................................GGCTGTTTATCCCGAAGGTAAACTAC............................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
......................................................................................................A--------G--GCGAG--AGAGCGAGAGAG..................................................................................................................................................................................................................................................................................................................1911.0010100000000
..CGCCCACCGCTGCGGCCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................TACAG-ATACCAGA-AATCGTTTAAG----AACA-................................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................AACAA--AAACAGAACAAGA-ATCA-------------------------ATT......................................................................2511.0010100000000
.............GCGGCCGGTGGCGTTGCGGCGGCTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................GAAACAACAGACA--------G--GCGAG--A.............................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................GAAAAGTAG--AGAGAAACAACAGACA--------G--GC...................................................................................................................................................................................................................................................................................................................................2811.0010001000000
.........................................................................................................................AGAGCGAGAGAGGAGAGA............................................................................................................................................................................................................................................................................................................1820.5010000001000
............................................................................................................................................................................................................A-ACAAAAAACA--AAA------------------------------------------------------------------------------------ACA-------AAA.........................................................................................................................20200.0510100000000
droWil2
GCCGCAAACCGCTGCGGCTGGTGGCGTAGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGTGAAACAAC--------------AAA-ACA-------------------------------------------------------------------------------------------------------------------------------------------------AAG-CAAAAACAATTTAAT--A--ATAACAGAAAATCGTTTAAA----CACA-CCGCAGACATACTTTATATATATATATATACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................GAGA---GACA--------G--GCGAG--C---------------------------------GA--G-AGC...................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................................AAACAATTTAAT--A--ATAACAGAAAATCGT..............................................2811.00100010
.................................GGCTGTTTATCCCGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.........................GTAGCGGCGGCTGTTTATCCC.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................................................................................AACAATTTAAT--A--ATAACAGAAAATC................................................2511.00100010
...............................................................................................................................................................................................................................................................................................................................................................................TTTAAT--A--ATAACAGAAAATCGTTTAAA----C....................................2811.00110000
.......................................................................ATCAAGAAAAGTAGTAAGAGC...........................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............GCGGCTGGTGGCGTAGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................................................................................AGTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------............................................................................................................................................................................................................................................................................................2411.00100010
....................................................................................................ACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGT...................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................................................................GTGAAACAAC--------------AAA-ACA-------------------------------------------------------------------------------------------------------------------------------------------------AAG-CAAAAA...........................................................................2511.00100010
.....AAACCGCTGCGGCTGGTGGCGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.................................................................................GTAGTAAGAGCGAGA---GACA--------G--GC...................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................G--C---------------------------------GA--G-AGCGTT---A---CA-AGTGAAACAAC--------------A............................................................................................................................................................................................................................................2611.00100010
.......................................................CTACAAATGATATCAAATCAAGAAAAGT....................................................................................................................................................................................................................................................................................................................................................................2811.00101000
....................................................................................GTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------............................................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGTG..................................................................................................................................................................................................................................................................2711.00100100
.............GCGGCTGGTGGCGTAGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTAAA----CACA-CCGCAGA.........................2111.00100010
..................TGGTGGCGTAGCGGCGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................................................................................................GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-A.....................................................................................................................................................................................................................................................................2411.00100100
droVir3
GCCGCCAACCACTGCGGCCGGAGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAGGAGGCTTA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAAC--------------ATA-ACAAAAA----------GAAA-------------------------------------------------------------AAAGAG----A---AAAACA---TTAAAAACAA------AAAACCAGA-A-------------------------ACAGTA----ACAG-AAATCAGA-AATCGTTTAA------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......AACCACTGCGGCCGGAGGCGTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2414.004000000000000000000000010000000000001000000000000000000000000020
.............GCGGCCGGAGGCGTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................1812.002002000000000000000000000000000000000000000000000000000000000000
......AACCACTGCGGCCGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000001000001000000000000000000000000000
...............................................................................................A---AACA--------GATGCCAG--GG-------------------------------AGA--........................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
......................GGCGTTGCGGCGGCTGTTTATCCCGAA......................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..CGCCAACCACTGCGGCCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.........................................ATCCCGAAGGTAAACTACAAAT........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GTA----ACAG-AAATCAGA-AATCGT..............................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................GATATCAAATCAAGAAAAGTA...................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................A---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTA...............................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
.........CACTGCGGCCGGAGGCGTTGCGGCGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
................................................................................AGTAGTAGGAGGCTTA---AACA--------GA......................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................A-A-------------------------ACAGTA----ACAG-AAATCAGA-AATCG...............................................2511.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AAAGAG----A---AAAACA---TTAAAAACAA------................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
GCCGCCAACCACTGCAGCCGGTGGAGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGGGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAAC--------------ATA-ACAAAAGAAA-----AAGAAAA---AAAAGAAGAAA----AA------------------------------------------GGAA----ATTAAAAACAAAATTCGAAACAA------AAAACCAGA-A-------------------------ACAGTA----ACAG-AAATCAGA-AATCGTTTAA------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................AA---AAAAGAAGAAA----AA------------------------------------------GGAA----AT...........................................................................................................................................2111.001000010
..CGCCAACCACTGCAGCCGGTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-......................................................................................................................................................................................................................................................................2311.001000100
...................................................................................................AACA--------GATGCCAG--GG-------------------------------AGA--G-AGC...................................................................................................................................................................................................................................................................................2111.001000010
......................................................................................GGGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--........................................................................................................................................................................................................................................................................................2711.001100000
..................................................................ATCAAATCAAGAAAAGTAGTGGGA.............................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........................................................................CAAGAAAAGTAGTGGGAGGC..........................................................................................................................................................................................................................................................................................................................................................2011.001000001
...............................................................................................A---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGC...................................................................................................................................................................................................................................................................................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................GTA----ACAG-AAATCAGA-AATCGTT.............................................2211.001000001
.......................................................................................................................................................................................................................................................................................................................................AAAACCAGA-A-------------------------ACAGTA----ACA...............................................................1911.001100000
..........ACTGCAGCCGGTGGAGTTGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
GCCGCCAACCACTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGCGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAAC--------------ATA-ACAAACAAAA--AAA------------------------------------------------------------------------------------GAA-------ATACAAAAAAACAAAACCAGA-A-----------------------------------ACA--GTAACAGA-AATCGTTTAAA----TACAATCA---------TA--------------AAC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................ACAGA-AATCGTTTAAA----TACAATCA---------TA--------------....2611.00101
droAna3
GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAC-AAA--------------AAA-AAAAA----------ACAAAGCAAAAAAAAAAAAAT----AC------------------------------------------TGAA----A---------------------A--AAAAA---ACAAAAATCAACAA---------AAG-CATAAA-----CAATACA--ATACCAGA-AGTCGTTTAAA----CACA-T---------ACTTT------------ATACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................GACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGG.................................................................................................................................................................................................................................................................................2711.001010000
GCCGCCCACTGCTGCCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................AAA-----CAATACA--ATACCAGA-....................................................1811.001010000
.......................................................................ATCAAGAAAAGTAG--AGAGACAGA---....................................................................................................................................................................................................................................................................................................................................................2311.001000010
....................................................................................................ACA--------G--GCGAG--CA-------------------------------AGG--G-AGC...................................................................................................................................................................................................................................................................................1811.001100000
.......................GCGTGGCGGCGGCTGTTTATCCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................GGCTGTTTATCCCGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........CTGCCGCTGGGGGCGTGGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......ACTGCTGCCGCTGGGGGCGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................CAGA---GACA--------G--GCGAG--CA-------------------------------AGG--........................................................................................................................................................................................................................................................................................1911.001000010
...............................................................GATATCAAATCAAGAAAAGTAG--AG..............................................................................................................................................................................................................................................................................................................................................................2411.001000010
...............CGCTGGGGGCGTGGCGGCGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................G--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-A.....................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................ACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGT.................................................................................................................................................................................................................................................................................2611.001000100
.............................................................................AAAAGTAG--AGAGACAGA---GACA--------G--GC...................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................GGCGGCGGCTGTTTATCCCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................................................................................A---------------------A--AAAAA---ACAAAAATCAACAC---------.....................................................................................2130.331010000
................................................................................................................................................................................................................AAA----------ACAAAGCAAAAAAAAAA.........................................................................................................................................................................................................2070.141010000
droBip1
GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAGAGA---GACAGAGAGACAG--GCGAG--CA----A------------------------AAAGGGAGAAGCGTTATTA---CAAAGTAAAAAAAAACAAAATATACAAAAAA-AAAAA--ACAAA---A---AGCTAAA--------CTAAAAACTGAAACAAAC-------------------------------------------------------------------------------AGCAACAA----AA---AAGACATAAA-----CAATACAA-ATACCAGA-AGTCGTTTAAA----CACA-T---------ACTTTAT----------ATACTSizeHit CountTotal NormTotal
No Reads
droKik1
GCCGCCGACCGCTGCCGCCGGTGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGACAGAGAGAGA---AACAGAGAGACAG--GCGAG--CA----A------------------------GAAGG--G-AGCGTTATAA---CA-AGAAAAACAAA----------------------A----------TAGAAACA------------------------------AAACAAAACA-----------------ATTA--------A---------------------A--AAACA---AAAGAAATCAACCAACAAAA-CCGAG-CAAAAACCATTTAATACA--ATACCAGA-AATCGTTTAAA----C--C-ACA----CACACAT--------------TACTSizeHit CountTotal NormTotal
No Reads
droFic1
GCCGCCTGCCGCTGCCGCCGCGGGCGTGGCGACGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA--AC--------------AAA-ACAAA----------TCGAAACA------------------------------AAA--------TACAAAAAATACAACAAAAA-AAA----A---------------------A--AACCA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATGCA--ATACCAGA-AATCGTTTA-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCCGCCTGCCGCTACCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAAACAAAAA-----AAAAA-ACAAA----------ACGAAACA--------------------------AAC---------------AA----------------GAA----AAAAAAAACAAAC----AAACAA--AAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTTAAA----CACC-C--------------------------ATACTSizeHit CountTotal NormTotal
No Reads
droRho1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACA-----------------AA-ACAAT----------ACGAAACA--------------------------AAC---------------AA-----------------------A---------------------A--AAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCCGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GGAAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AAC--------------AAAAACA----------------------------------------------AAC---------------AA---------AAATTA--AAAACCA---------------------A--GAACA---TAAGAAATCAACCTACAAAATCCAAG-CAAA---------ATACA--ATACCAGA-AATCGTTTAAA----CACA-----------------------------TACTSizeHit CountTotal NormTotal
No Reads
droTak1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTA---------AGTAAAA-AAC--------------AAA-ACAAA----------ATGAAACA--------------------------AACAAAACAAAACAATACAA---------AAAA----------A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--GTACCAGA-AATCGTTTAAA----CACA-C--------------------------ATACTSizeHit CountTotal NormTotal
No Reads
droEug1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AAC--------------AAA-ACAAA--ACA--AAATCGAAAA----------------------------------------------------------------------A---------------------A--AAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACAAAATACCAGA-AATCGTTTAAA----CACA-C-------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AAA--------------AAA-ACAAA----------TCGAAACA------------------------------AAACAAAAC-----AA---------AAAATATGAG----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................TCAAATCAAGAAAAGTAG--AGAGACAGA---....................................................................................................................................................................................................................................................................................................................................................27110.00100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000001600000
...................................................................................AG--AGAGACAGA---GACA--------G--GCGAG--C.............................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAGA-AATCGTTAAAAAGA......................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................AAAGTAG--AGAGACAGA---GA..................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CAAAA--------ATACA--ATACCAGA-AATCGTTAAA..........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATACCAGA-AATCGTTAAAAAG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AAA--------ATACA--ATACCAGA-AATCGTTA............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CAACCAACAAAATCCAAG-CA...............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-A.....................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGCGGCTGTTTATCCCGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGATATCAAATCAAGAAAAGTAG--AGAA............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-......................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AACA---TAAGAAATCAACCAACAAAATC......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CGAAGGTAAACTACAAATGA......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................GG--G-AGCGTTATTA---CA-AGTAA.................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGTGGCGGCGGCTGTTTATCCCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................ATATGAG----A---------------------A--GAACA---TAAGA.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AAAAGTAG--AGAGACAGA---G...................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AGTAG--AGAGACAGA---GACA--------G--GC...................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................A--GAACA---TAAGAAATCAACCAA.............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TCCAAG-CAAAA--------ATACA--AT...........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AACAAAAC-----AA---------AAAATATG...................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CGTTATTA---CA-AGTAAAA-AGT--------------C............................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAA--------------AAA-ACAAA----------TCGAAACA------------------------------AAA----------CAA---------AAAATATGAG----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................ATATGAG----A---------------------A--GAACA---TAAGAAATCAA.................................................................................................2512.00200000000000002000
................................................................................................................................................................................................................................................................................................TATGAG----A---------------------A--GAACA---TA..........................................................................................................1511.00100000010000000000
......TGCCGCTGCCGCCGGGGGCGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.............................................................................................................................................................................................................................TCGAAACA------------------------------AAA----------CAA---------AAAATATGAG----A---------------------A--GA..................................................................................................................2811.00100000001000000000
...........................................................................................ACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTT................................................................................................................................................................................................................................................................................2711.00101000000000000000
........................................................................TCAAGAAAAGTAG--AGAGACAGA---GACA--------G--G....................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................AAGAAATCAACCAACAAAATCCA....................................................................................2311.00100001000000000000
..................................................................................TAG--AGAGACAGA---GACA--------G--GCGA.................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...GCCTGCCGCTGCCGCCGGGGGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..........................................................................................................................G-------------------------------AGG--G-AGCGTTATTA---CA-AGT...................................................................................................................................................................................................................................................................2011.00100010000000000000
.........................................................................................................................................................................TA---CA-AGTAAAACAAA--------------AAA-ACAAA----------TCGAAA....................................................................................................................................................................................................................2911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAAA--------ATACA--ATACCAGA-AATCGTT.............................................2411.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------2711.00100000000001000000
............................................................................................................................................................................................................................................................................................AAAATATGAG----A---------------------A--GAA.................................................................................................................1530.33100000010000000000
droSec2
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAA--------------AAA-ACAAA----------TCGAAACA------------------------------AAA----------CAA---------AAAATATGAG----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAAAGAA-------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................GACA--------G--GCGAG--CG-------------------------------AGG--G-AGC...................................................................................................................................................................................................................................................................................1912.0020110
.................................GGCTGTTTATCCCGAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................GACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--........................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................GAG--CG-------------------------------AGG--G-AGCGTTATTA---C........................................................................................................................................................................................................................................................................2011.0011000
...................................................................................AG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------.............................................................................................................................................................................................................................................................................................2311.0010010
.....CTGCCGCTGCCGCCGGGGGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
droYak3
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACA-----------------AA-ACAAA----------TCGAAACA---------------------------------------------A---------AAATTATGAA----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA---------------ATACCAGA-AATCGTTTAAAAAAACACA-C--------------------------ATACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....CCTGCCGCTGCCGCCGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................1815.00500000000005
.............................................................................................AGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGT.................................................................................................................................................................................................................................................................................2412.00200100010000
.......................................................................................................................................................................................................................................................................................................................................A---TAAGAAATCAACCAACAAA.........................................................................................2011.00101000000000
.......................GCGTGGCGGCGGCTGTTTAT............................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........CCGCTGCCGCCGGGGGCGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................CAAAA---------------ATACCAGA-AATCGTT.............................................2011.00100000010000
.......................................................................ATCAAGAAAAGTAG--AGAGACAGA---G...................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...................................................................................................................................................................................................................................................................................................GAA----A---------------------A--GAACA---TAAGAAATCAACC...............................................................................................2311.00100100000000
.........................................................................CAAGAAAAGTAG--AGAGACAGA---GACA--------G--G....................................................................................................................................................................................................................................................................................................................................2711.00100100000000
........................................................................TCAAGAAAAGTAG--AGAGACAGA---....................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................AAAGTAG--AGAGACAGA---GACA--------........................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................................................A--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-A.....................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AACGTTATTA---CA-AGTAAAATA-A--------------AAA-ACAAA----------TCGAAACA------------------------------AAACAAAACA-----A---------CAAATATGAA----A---------------------A--GAACA---TAAGAAATCAACCAACAAAATCCAAG-CAAAA--------ATACA--ATACCAGA-AATCGTTAAAA----A------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................ATCAAATCAAGAAAAGTAG--AGAGACA.........................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....................................................................................G--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--........................................................................................................................................................................................................................................................................................2511.0011000000
.........................GTGGCGGCGGCTGTTTATCCCGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...............................................................GATATCAAATCAAGAAAAGTA...................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......GCCGCTGCCGCCGGGGGCGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................ATCCCGAAGGTAAACTACAAATG.......................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
..................................................................ATCAAATCAAGAAAAGTAG--AGAGACAGA---....................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.........................................................................CAAGAAAAGTAG--AGAGACAGA---GA..................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..............................................................TGATATCAAATCAAGAAAAGTAG--AGA.............................................................................................................................................................................................................................................................................................................................................................2611.0011000000
......................GGCGTGGCGGCGGCTGTTTATCCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................GACA--------G--GCGAG--CA-------------------------------AGG--G-AACGTTATT.............................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................ATCAAGAAAAGTAG--AGAGAC..........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..................................................................................TAG--AGAGACAGA---GACA--------G--GC...................................................................................................................................................................................................................................................................................................................................1911.0010100000
.........................................................................................................................CA-------------------------------AGG--G-AACGTTATTA---CA-AGT...................................................................................................................................................................................................................................................................2111.0010001000
..........................................................................AAGAAAAGTAG--AGAGACAGA---GA..................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...............................................................................................................................................................................................................................................................................................................................................................TCCAAG-CAAAA--------ATACA--ATACCA.......................................................2211.0011000000
........................................................................................................................................................................TTA---CA-AGTAAAATA-A--------------AAA-ACAAA----------TCGAA.....................................................................................................................................................................................................................2811.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................ATACA--ATACCAGA-AATCGTTAAA..........................................2311.0010000100
.............................................................ATGATATCAAATCAAGAAAAGTAG--................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..............................................................................................GA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AAC...................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................GATATCAAATCAAGAAAAGT....................................................................................................................................................................................................................................................................................................................................................................2011.0010000100

Generated: 06/08/2015 at 02:41 PM