ID:

dpe_421

 Coordinate:

scaffold_0:6966619-6966769 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.5 -17.5 -17.5

Flybase annnotation

CDS [Dper\GL24235-cds]; exon [dper_GLEANR_6543:2]; intron [Dper\GL24235-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10:2061538-2061565 -
  2. scaffold_25:911242-911269 +
  3. dpe_373  scaffold_0:2223180-2223207 +
  4. scaffold_0:3851017-3851044 +
  5. dpe_421  scaffold_0:6966630-6966657 +
  6. scaffold_0:11226434-11226461 -
  7. scaffold_2:666965-666992 +
  8. scaffold_2:683278-683305 -
  9. scaffold_2:3768292-3768319 -
  10. scaffold_3:1859098-1859125 +
  11. scaffold_3:2446164-2446191 +
  12. scaffold_3:5478627-5478654 +
  13. scaffold_4:683576-683603 -
  14. scaffold_5:3993261-3993288 -
  15. scaffold_7:175903-175930 +
  16. scaffold_7:3359354-3359381 +
  17. scaffold_9:1391039-1391066 +
  18. scaffold_12:1683006-1683033 +
  19. scaffold_17:126333-126360 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCAACCAACAGCAGCAACAGCAACAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAAGGGTCAGTTCTCGATGAGTGTTGAGAGTGTCTTTCGTTTGGTTTACCTTATGTGTGCCGTCCCATGTAACCCCACTTCCCAAACACACACACTCTTATGTTGTTCCTTTTGCGTTGATTGTTGCATGCCACAACACGTACACGTACATGTGCATGTGCCTT
*************************************************************.((.((..........)).))...(((.((((.((.((((((((....)))))))))).)))).)))((((.(((.....))).)))).............***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V042
embryo
 V111
male body		 V057
head
 M042
female body
 V050
head
.......CCATGGCGGACGAGCTGACGCT.............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..GGGCTCCATGGCGGACGAGC..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.....CTCCATGGCGGACGAGCT.................................................................................................................................................................................................................................... 18 0 2 1.00 2 2 0 0 0 0 0
.........................................................................................................................................TTATGTGTGCCGTCCCATGTAACCC......................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.................................AACCAACAGCAGCAACAGCA...................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0
........CATGTCGGCCGAGCAGACGCT.............................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0
.............................................................AGCAGCAACAACAACAGCAGCAGCAGCA.................................................................................................................................................................. 28 0 19 0.05 1 0 1 0 0 0 0
................................................................AGCAACAACAACAGCAGCAGC...................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
............................................GCAACAGCAACAACAGCAGCAGC........................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 1 0
.........................................................CAGCAGCAGCAACAACAACAGCAGCA........................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
....................................................AACAACAGAAGCAGCAACAAC.................................................................................................................................................................................. 21 1 20 0.05 1 0 0 0 0 1 0
....................................................AACAACAGCAGCAGCAACAA................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
...................................................................AACAACAACAGCAGCAGCAGCA.................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 1
..................................................GCAACAACAGCAGCAGCAACA.................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TGCCCGAGGTACCGCCTGCTCGACTGCGACACGTTGGTTGTCGTCGTTGTCGTTGTTGTCGTCGTCGTTGTTGTTGTCGTCGTCGTCGTTCCCAGTCAAGAGCTACTCACAACTCTCACAGAAAGCAAACCAAATGGAATACACACGGCAGGGTACATTGGGGTGAAGGGTTTGTGTGTGTGAGAATACAACAAGGAAAACGCAACTAACAACGTACGGTGTTGTGCATGTGCATGTACACGTACACGGAA
*****************************************************************************************.((.((..........)).))...(((.((((.((.((((((((....)))))))))).)))).)))((((.(((.....))).)))).............************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V111
male body		 V050
head
.....................................................................................................................................................TGGGTGCATTGGGGTGAAGGT................................................................................. 21 3 1 1.00 1 1 0 0
......................................................................................................................................................GGTTAAATTGGGGTGAAGGG................................................................................. 20 2 1 1.00 1 1 0 0
......................................................................................................................................................GGGTGCATTGGGGTGACGGG................................................................................. 20 2 2 1.00 2 2 0 0
.....................................................................................................................................................TGGGTAGATTGGGGTGACGGG................................................................................. 21 3 3 0.67 2 2 0 0
................................................................................................................................................................................TGTGTGTGACTACAACAAG........................................................ 19 2 3 0.67 2 0 2 0
.......................................................................................................................................................GGTAGATTGGGGTGACGGG................................................................................. 19 2 2 0.50 1 1 0 0
.......................................................................................................................................................GGTACATTGGTGTGACGGG................................................................................. 19 2 2 0.50 1 1 0 0
......................................................................................................................................................GGGTAGATTGGGGTGACGGG................................................................................. 20 2 2 0.50 1 1 0 0
..............................................................................................................................................................................TGTGTCTGAGAATACAATA.......................................................... 19 2 2 0.50 1 1 0 0
......................................................................................................................................................TGGTACATTGGTGTGACGGG................................................................................. 20 3 7 0.29 2 2 0 0
.....................................................................................................................................................TGGGTCCATTGGGGTGACGGG................................................................................. 21 3 4 0.25 1 1 0 0
..........................AGACACGTTGGTTGTCGGAGT............................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0
......................................................................................................................................................GGGTGCATTGGTGTGACGGG................................................................................. 20 3 4 0.25 1 1 0 0
.........................................................................................................................................................................................................................GGTGTTGTGCAAGTCCAT................ 18 2 5 0.20 1 0 1 0
......................................................................................................................................................GGGTAGATTGGAGTGACGGG................................................................................. 20 3 5 0.20 1 0 0 1
.......................................................................................................................................................GGTCCATTGGGGTGACGGG................................................................................. 19 2 5 0.20 1 1 0 0
......................................................................................................................................................CGGTACATTGGTGTGAAGGT................................................................................. 20 3 5 0.20 1 1 0 0
.......................................................................................................................................................GGTACATTGGGGTGACGGT................................................................................. 19 2 5 0.20 1 1 0 0
......................................................................................................................................................TGGTCGATTGGGGTGAAGGG................................................................................. 20 3 12 0.17 2 2 0 0
.....................................................................................................................................................TGGGTAGATTGGGGTGAAGGT................................................................................. 21 3 6 0.17 1 1 0 0
......................................................................................................................................................GGGTCGATTGGTGTGAAGGG................................................................................. 20 3 13 0.15 2 1 0 1
......................................................................................................................................................CGGTAGATTGGGGTGAAGGT................................................................................. 20 3 8 0.13 1 1 0 0
......................................................................................................................................................TGGTATATTGGGGTGACGGG................................................................................. 20 3 10 0.10 1 1 0 0
...........................GACTCGTTGGTTGTCGGAGT............................................................................................................................................................................................................ 20 3 12 0.08 1 1 0 0
......................................................................................................................................................GGGTAGATTGGTGTGACGGG................................................................................. 20 3 12 0.08 1 0 0 1
......................................................................................................................................................GGGTCGATTGGGGTGAAGGT................................................................................. 20 3 13 0.08 1 1 0 0
......................................................................................................................................................GGGTCAATTGGGGTGACGGG................................................................................. 20 3 13 0.08 1 1 0 0
......................................................................................................................................................GGGTCCATTGGGGAGACGGG................................................................................. 20 3 14 0.07 1 1 0 0
......................................................................................................................................................TGGTAGATTGGGGTGACGGG................................................................................. 20 3 15 0.07 1 1 0 0
......................................................................................................................................................TGGTGCATTGGGGTGAGGGG................................................................................. 20 3 18 0.06 1 1 0 0
......................................................................................................................................................GGGTATATTGGGGTGACGGT................................................................................. 20 3 20 0.05 1 1 0 0
......................................................................................................................................................GGGTGCTTTGGGGTGACGGG................................................................................. 20 3 20 0.05 1 1 0 0
.......................................................................................................................................................GTTACATTGGGGTGACGGT................................................................................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:6966569-6966819 + dpe_421 ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCAACCAACAGCAGCAACAGCAACAACAGCA----G------CAGCAACAACAACAGC------AGCAGCAGCAAGGGTCAGTT--CT---CGAT-GAGTGTTGAGAGTG--TCTTTCGTTTGGTTTA-----------------------------------------CCTT------ATGTGT--G------------------------CCGTCCCATGTAACCC----------------------------------------------------------CACTTCCCAAACACACACAC-TC--TTA---TGTTGTT-CCTTTTGCGT---------TG-ATT-GTTGCATGCC-AC--A------------------------------------------------------------------------------------------------ACAC-G----TACA--------CGTACATGTGCATGTGCCTT-
dp5 2:13482475-13482737 - ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCAACCAACAGCAGCAACAGCAACAACAGCA----G------CAGCAACAACAACAGCAACAGCAGCAGCAGCAAGGGTCAGTT--CT---CGAT-GAGTGTTGAGAGTG--TCTTTCGTTTGGTTTACC-------------------------------TTATGTG------------------TA------------------------CCGTCCCATGTTACCC----------------------------------------------------------CACTTCCCAAACACACACAC-CC--TTA---TGTTGTT-CCTTTTGCGT---------TG-ATT-GATGCATGCC-AC--A------------------------------------------------------------------------------------------------ACAC-G----TACACGTAC--ACGTACATGTGCATGTGCCTT-
droWil2 scf2_1100000004521:11397166-11397368 - ACGAGATG-------------ATGACGGCG-ACAACCA---GCAGCAGCAGCAGCAGCAGCA----A------CAGCAACATCAACAGC------GACAGCAGCAA-CATCAGTT--GT---TGTA-GGGCGGTGGGGGGGGGTTTT------------------ATGTCGG-------------------------GTG-------------TGGCCAAGGCTAGTGGGAGATATTGGTGTACTGCAATGT-------C--------------------GCCTT------------------------ACCTCCCC-----------------TTA-CC--TTA---TGCTCTC-CCTT-------------TGGG-TTC-ATTG---------------------------------------------------------------------------------------------------------------------------------------------------TTG-
droVir3 scaffold_12875:15974251-15974449 - GT----TGCATGATGGAAGCGATGGCAACGACAAC--A---ACAACAACAACAACA----------ACAGCAACAA------CAACAACAGCAACAACAACAACAACAGCAAAAT--GT---AGAA-AAACAAAATGAATG--CCTTTTAGTTGGTGTATTTTATAGACATAGTT-GT--------------T-------------------------------------------------------------------------------------------------------------------------------------------------GT--TGT---TGTTGTT-GCTG-------------TTAG-ACT-CTTGCACACA----------------------------------------------------------------------------------------------------------------T----------ACATACATATATATGC-ATGT-
droMoj3 scaffold_6540:29592510-29592729 - ACCAGCCAAAACAACAAC--AACAACA---------------------------------------ACAG---CAACAA---CAACAACAGC---AACAACTACAAATACAAGTA--CTTGACATAAGGCAATGC------------------------------ACCTCGCTT--------------------TTGTACTTT------TGTAAAC-------------------------------------------GCCGTC-------------------A------------------------GCCCCACT-----------------GAC-AC--AGA---CAGTATT-CGCA------------------------------------------------------------------------------TTGAACAACGTTGTAACTATGGCAATAATTTTC-GCGTATTTAACTAGACATA---AGAC-A----T----------ACATAGATATACTTGTAC-CT-
droGri2 scaffold_15252:5986644-5986845 + CAGCAG-CAGCAACAGCAACAACAACA---------------------------------------A------CTGCAGCAGCAACAAC---------AACAACAACAACTGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCCCAGACAATCGCAT-TC--CAA---AGGCGAA-CCTTTTGCCA---------AA-GC-------------------------AGCCAAAGCCAAAGCCAACTCCAAAGCAGAGAGACGCAGATCGTTGTTGCCGTCGCCTTTGCTGCCTGCGTTGCCTGCATGCCACA---ACAC-C----TACA---------------------------C-
droAna3 scaffold_13340:20569563-20569775 - ACTGGCTCCATGGCGGACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CC---CGAT-GACTGTTT------------TTATTTG----------------------AT--------------------TCT--------TATAAAT-------------------------------------------GTCACG--A-CCCCCAATAAC---CTTC--AAAAGAAAAAACAACAAA-------ACA-----------------AAT-CCTTTTA---TGTTGTT-CCATTTACGTTGTAAAAATAA-TTT-GTTGCATGTC-CT--C------------------------------------------------------------------------------------CCTGACACTCCAC-------------------CA------AT------AGCTTG-
droBip1 scf7180000396413:1833385-1833587 + ACCGGCTCCATAGCGGACGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CC---CGAT-GACTGTTT-----------TTTATT----------------TCAT--------------------------TCT--------TATAAAT-------------------------------------------GTCACG--ACCCCCCAATAAC---CTTTGAAAAAGA-----------A-------ACA-----------------AAT-CCTTTTA---TGTTGTT-CAATTTACGTTGTAAACATAA-TTT-GTTGCATGTC-CT--C------------------------------------------------------------------------------------TTTGACACTCCAC-------------------CA------AA------AGCTTG-
droKik1 scf7180000302475:1230715-1230906 - ACGGGCTCCATAGCGGACGAGCTGACGCTGTGCACCCAACAGCAG-----------------CAGC--------------------------------AGCAGCAAGGGTCAGTTTACT---CGAT-GGCTGTTT------------TTGTTT--------------AT-TAATTGTTTTTGGTTTTTACGTTTTTGTGTAAAT--------ATGTGTT------------------------ACCCAA-------------------------------------------------------------------------------------AAA-CC-ATTA---TAATAT---TAT-------------ATTATTTT-ACTGCATGAC-CA--------------------------------------------------------------------------------------------------AA--------------------------CTTAGCTAAAGCTTT-
droFic1 scf7180000453912:411915-412133 + ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT-----------TTTG----------------GTTCAGTTC-GT--------------CTATATGCCACC--------TTATACT------------------------ATATTATAT-------GTCACCCAG-----------C---CCCC--------------------AAGTC----------------------AAG-AT--TTT---TGTTGTT-CCAT-------------ATAA-TTTGTTTGCATGCC-AA--AAAAAAAACACAAAAAATATATAG-----------------------------------------------------------------AAAACCAA---------------------------ATTTGCTTGAGCTTT-
droEle1 scf7180000491047:1253902-1254089 - ACGGGCTCGATTGCGGACGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT---------------------------------TCAGTTC-GT--------------TTATAT----AT--------ATAT-------------------------------------------GTCACTC---CTTGGAATAAC---CCCC--------------------AAGTCCCAAC-----------------A---------T---TATTGTT-TAAT-------------ATAA-TTT-ATTGCATGCT-AA--A------------------------------------------------------------------------------------------------AATTCGATATAAAGTGA------------AATCTTGCGCTTTT
droRho1 scf7180000771044:16525-16723 + ACGGGCTCGATTGCG-ACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT---------------------------------TCAGTTT-GT--------------TTATATCTGTATATAAGTATATAT-------------------------------------------GTCACTC----CCCGGAGAAC---CCTC--------------------AATTC----C-----------------AAA-C----TT---TATTATT-GACT-------------ATGA-TTT-ATTGCATGGT-AAACA------------------------------------------------------------------------------------------AATCT-----------AAAAAGAAA----------GAGCTACCGCTTT-
droBia1 scf7180000302402:2694434-2694621 + ACGGGTTCCATAGCGGACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTA------------------------------ACCTCAGTTT---------------------------AT--------ATAT-------------------------------------------GTCACAC----CC-------CCACCAAC--------------------AAGTC----C-----------------AAG-CC-ATTA---TGTTGTT-TAAT-------------ATTA-TTT-CTTGCATGCT-AA--A------------------------------------------------------------------------------------------------AAAC-C----AAAGTGAAA--AACCTAACTAGCTTGAGCTTT-
droTak1 scf7180000415380:797948-798142 + ACGGGCTCGATAGCGGACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTC------------------------------TTAT-AATTTGTTTTTCGT--------ATACCTGCCCAT--------AAAT-------------------------------------------GTCGAA----GCC--------------------------------------------C-----------------CAA-CCTGTTA---TGTTGTTATAAT-------------ATCA-TTT-ATTGCATGCC-GA--A------------------------------------------------------------------------------------------------AAAC-G----AAAAAGAAT--AACCTAACTAGCTTGAGCTTT-
droEug1 scf7180000409802:35053-35250 - ACGGGTTCAATAGCGGATGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTTCTCT---CGAT-GGCTGTTT------------------------------ATTTCATTT--------------------ATGTTT-------------TGAATTACCCAAATGATAG------------------AT-------GTCATC----CCC--------------------------------------------T-----------------CAG-CC--TTTTTATGTTGTT-TAAT-------------ATAA-TTT-GTTGCATGCA-TG--A------------------------------------------------------------------------------------------AATCA-----------AAAACGAAAATACCTTAACTTGCTTGAGCTTT-
dm3 chr3R:9906136-9906325 + ACGGGCACAATGGCGGATGAGCTGACGCTGTGCAACCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GT--------------TTAAATGCCCAT--------ATATGTC------------------------ACACAATAT-------G--------------------TCCCG------------------------GTTCCACC-----------------CAA-CC--TTT---TGTTGTT-TCAT-------------ATAA-TTT-ATTGCATGCC-GA--A-TGG------------------------------------------------------------------------------------AAAATCAA---------------------------AATAGCTTGAGCTTT-
droSim2 3r:11279601-11279790 - ACGGGCACCATGGCGGATGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GT--------------TTAAGTGCCCAT--------ATATGTC------------------------ACACAATAT-------G--------------------TCCCG------------------------GTCCCACC-----------------AAA-CC--TTT---TGTTGTT-TCAT-------------ATAA-TTT-ATTGCATGCC-GT--A-TAG------------------------------------------------------------------------------------AAAATCAA---------------------------ACTAGCTTGAGCTTT-
droSec2 scaffold_0:12109953-12110142 - ACGGGCACCATGGCGGATGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GT--------------TTAAGTGCCCAT--------ATATGTC------------------------ACACAATAT-------G--------------------TCCCG------------------------GTCCCACC-----------------AAA-CC--TTT---TGTTGTT-TCAT-------------ATAA-TTT-ATTGCATGCC-GT--A-TAG------------------------------------------------------------------------------------AAAATCAA---------------------------ACTAGCTCGAGCTTT-
droYak3 3R:16525374-16525599 - ACGTGCTCTGTAGCGGATGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GTTTAAGT--------TTAAGTGTCCATATATATACATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------GTCCTACT-----------------AAGACT--TTT---TGTTGTT-TACT-------------ATCA-TTT-ATTGCATGCATGA--A-TAGAAAAACCAAAACCAAAACC-----------------------------------------------------------------------------------------AAA--ACCAAAACAAGCTTGAGCTGT-
droEre2 scaffold_4770:9446726-9446903 + ACGGGCACCATGGCGGATGAGCTGACGCTGTGCCCCCA---G----------------------------------------------------------CAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT-----G--T-TTG-----------------AGCTCAGTTT-GT--------------TTAAGTGCCCGT--------ATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------GTCCTACC-----------------AAG-CC--TTT---TGTTGTT-CACT-------------ATAA-TTT-ATTGCATGCC-GA--A-TGG------------------------------------------------------------------------------------AGCACCAA---------------------------ACTA------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCAACCAACAGCAGCAACAGCAACAACAGCA----G------CAGCAACAACAACAGC------AGCAGCAGCAAGGGTCAGTT--CT---CGAT-GAGTGTTGAGAGTG--TCTTTCGTTTGGTTTA-----------------------------------------CCTT------ATGTGT--G------------------------CCGTCCCATGTAACCC----------------------------------------------------------CACTTCCCAAACACACACAC-TC--TTA---TGTTGTT-CCTTTTGCGT---------TG-ATT-GTTGCATGCC-AC--A------------------------------------------------------------------------------------------------ACAC-G----TACA--------CGTACATGTGCATGTGCCTT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......CCATGGCGGACGAGCTGACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..GGGCTCCATGGCGGACGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....CTCCATGGCGGACGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.002200000
..........................................................................................................................................................................................................TT------ATGTGT--G------------------------CCGTCCCATGTAACCC----------------------------------------------------------............................................................................................................................................................................................................................2511.001001000
.................................AACCAACAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501001000
.............................................................A----G------CAGCAACAACAACAGC------AGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.051001000
..........................................................................AGCAACAACAACAGC------AGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
............................................GCAACAGCAACAACAGCA----G------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.........................................................CAGCA----G------CAGCAACAACAACAGC------AGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000
....................................................AACAACAGCA----G------CAGCAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
.............................................................................AACAACAACAGC------AGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000100
..................................................GCAACAACAGCA----G------CAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
dp5
ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCAACCAACAGCAGCAACAGCAACAACAGCA----G------CAGCAACAACAACAGCAACAGCAGCAGCAGCAAGGGTCAGTT--CT---CGAT-GAGTGTTGAGAGTG--TCTTTCGTTTGGTTTACC-------------------------------TTATGTG------------------TA------------------------CCGTCCCATGTTACCC----------------------------------------------------------CACTTCCCAAACACACACAC-CC--TTA---TGTTGTT-CCTTTTGCGT---------TG-ATT-GATGCATGCC-AC--A------------------------------------------------------------------------------------------------ACAC-G----TACACGTAC--ACGTACATGTGCATGTGCCTT-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........ATGGCGGACGAGCTGACGCTGTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020101000000
....GCTCCATGGCGGACGAGCTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........CATGGCGGACGAGCTGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................ACAACAGCAACAGCAGCAGCAGCAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
............................................................................CAACAACAACAGCAACAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.0910000100000
...................................CCAACAGCAGCAACAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.0710000010000
............................................................................CAACAACAACAGCAACAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.0710100000000
.....................................AACAGCAGCAACAGCAACAACAGCA----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.0610000100000
.........................................GCAGCAACAGCAACAACAGCA----G------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100000
.......................................................AACAGCA----G------CAGCAACAACAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
................................................CAGCAACAACAGCA----G------CAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
....................................................................................ACAGCAACAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...........................................AGCAACAGCAACAACAGCA----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
................................................................................AACAACAGCAACAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.................................................................................ACAACAGCAACAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100000
..................................................GCAACAACAGCA----G------CAGCAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
..........................................................................AGCAACAACAACAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
................................................................................AACAACAGCAACAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
...................................................................................AACAGCAACAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010000
droWil2
ACGAGATG-------------ATGACGGCG-ACAACCA---GCAGCAGCAGCAGCAGCAGCA----A------CAGCAACATCAACAGC------GACAGCAGCAA-CATCAGTT--GT---TGTA-GGGCGGTGGGGGGGGGTTTT------------------ATGTCGG-------------------------GTG-------------TGGCCAAGGCTAGTGGGAGATATTGGTGTACTGCAATGT-------C--------------------GCCTT------------------------ACCTCCCC-----------------TTA-CC--TTA---TGCTCTC-CCTT-------------TGGG-TTC-ATTG---------------------------------------------------------------------------------------------------------------------------------------------------TTG-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................G-ACAACCA---GCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100010
.................................AACCA---GCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000
...................................................................................AACAGC------GACAGCAGCAA-C.............................................................................................................................................................................................................................................................................................................................................................................................................................................18160.06100010
....................................................................................ACAGC------GACAGCAGCAA-CA............................................................................................................................................................................................................................................................................................................................................................................................................................................18180.06100010
droVir3
GT----TGCATGATGGAAGCGATGGCAACGACAAC--A---ACAACAACAACAACA----------ACAGCAACAA------CAACAACAGCAACAACAACAACAACAGCAAAAT--GT---AGAA-AAACAAAATGAATG--CCTTTTAGTTGGTGTATTTTATAGACATAGTT-GT--------------T-------------------------------------------------------------------------------------------------------------------------------------------------GT--TGT---TGTTGTT-GCTG-------------TTAG-ACT-CTTGCACACA----------------------------------------------------------------------------------------------------------------T----------ACATACATATATATGC-ATGT-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........TGATGGAAGCGATGGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000001000000000000000000000000000000000000000000000000000000
...........................ACGACAAC--A---ACAACAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204004000000000000000000000000000000000000000000000000000000000000
.....................................................ACA----------ACAGCAACAA------CAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
.............................................................................................ACAACAACAACAACAGCAAAAT--....................................................................................................................................................................................................................................................................................................................................................................................................................................22120.081000000000000001000000000000000000000000000000000000000000000000
..........................................................................................GCAACAACAACAACAACAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................23170.061001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................T--------------T-------------------------------------------------------------------------------------------------------------------------------------------------GT--TGT---TGTTGTT-GCTG-------------TTA.................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................A----------ACAGCAACAA------CAACAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
..........................................................................AA------CAACAACAGCAACAACAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
..........................................................................................GCAACAACAACAACAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...................................................CAACA----------ACAGCAACAA------CAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000010000000000000000000000000000000000000000000
..................................................................ACAGCAACAA------CAACAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACCAGCCAAAACAACAAC--AACAACA---------------------------------------ACAG---CAACAA---CAACAACAGC---AACAACTACAAATACAAGTA--CTTGACATAAGGCAATGC------------------------------ACCTCGCTT--------------------TTGTACTTT------TGTAAAC-------------------------------------------GCCGTC-------------------A------------------------GCCCCACT-----------------GAC-AC--AGA---CAGTATT-CGCA------------------------------------------------------------------------------TTGAACAACGTTGTAACTATGGCAATAATTTTC-GCGTATTTAACTAGACATA---AGAC-A----T----------ACATAGATATACTTGTAC-CT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................A---------------------------------------ACAG---CAACAA---CAACAACAGC---AACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
droGri2
CAGCAG-CAGCAACAGCAACAACAACA---------------------------------------A------CTGCAGCAGCAACAAC---------AACAACAACAACTGGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATCCCAGACAATCGCAT-TC--CAA---AGGCGAA-CCTTTTGCCA---------AA-GC-------------------------AGCCAAAGCCAAAGCCAACTCCAAAGCAGAGAGACGCAGATCGTTGTTGCCGTCGCCTTTGCTGCCTGCGTTGCCTGCATGCCACA---ACAC-C----TACA---------------------------C-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................ACAACAACA---------------------------------------A------CTGCAGCAGCAACAAC---------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20110
droAna3
ACTGGCTCCATGGCGGACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CC---CGAT-GACTGTTT------------TTATTTG----------------------AT--------------------TCT--------TATAAAT-------------------------------------------GTCACG--A-CCCCCAATAAC---CTTC--AAAAGAAAAAACAACAAA-------ACA-----------------AAT-CCTTTTA---TGTTGTT-CCATTTACGTTGTAAAAATAA-TTT-GTTGCATGTC-CT--C------------------------------------------------------------------------------------CCTGACACTCCAC-------------------CA------AT------AGCTTG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....GCTCCATGGCGGACGAGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
ACCGGCTCCATAGCGGACGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CC---CGAT-GACTGTTT-----------TTTATT----------------TCAT--------------------------TCT--------TATAAAT-------------------------------------------GTCACG--ACCCCCCAATAAC---CTTTGAAAAAGA-----------A-------ACA-----------------AAT-CCTTTTA---TGTTGTT-CAATTTACGTTGTAAACATAA-TTT-GTTGCATGTC-CT--C------------------------------------------------------------------------------------TTTGACACTCCAC-------------------CA------AA------AGCTTG-SizeHit CountTotal NormTotal
No Reads
droKik1
ACGGGCTCCATAGCGGACGAGCTGACGCTGTGCACCCAACAGCAG-----------------CAGC--------------------------------AGCAGCAAGGGTCAGTTTACT---CGAT-GGCTGTTT------------TTGTTT--------------AT-TAATTGTTTTTGGTTTTTACGTTTTTGTGTAAAT--------ATGTGTT------------------------ACCCAA-------------------------------------------------------------------------------------AAA-CC-ATTA---TAATAT---TAT-------------ATTATTTT-ACTGCATGAC-CA--------------------------------------------------------------------------------------------------AA--------------------------CTTAGCTAAAGCTTT-SizeHit CountTotal NormTotal
No Reads
droFic1
ACGGGCTCCATGGCGGACGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT-----------TTTG----------------GTTCAGTTC-GT--------------CTATATGCCACC--------TTATACT------------------------ATATTATAT-------GTCACCCAG-----------C---CCCC--------------------AAGTC----------------------AAG-AT--TTT---TGTTGTT-CCAT-------------ATAA-TTTGTTTGCATGCC-AA--AAAAAAAACACAAAAAATATATAG-----------------------------------------------------------------AAAACCAA---------------------------ATTTGCTTGAGCTTT-SizeHit CountTotal NormTotal
No Reads
droEle1
ACGGGCTCGATTGCGGACGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT---------------------------------TCAGTTC-GT--------------TTATAT----AT--------ATAT-------------------------------------------GTCACTC---CTTGGAATAAC---CCCC--------------------AAGTCCCAAC-----------------A---------T---TATTGTT-TAAT-------------ATAA-TTT-ATTGCATGCT-AA--A------------------------------------------------------------------------------------------------AATTCGATATAAAGTGA------------AATCTTGCGCTTTTSizeHit CountTotal NormTotal
No Reads
droRho1
ACGGGCTCGATTGCG-ACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT---------------------------------TCAGTTT-GT--------------TTATATCTGTATATAAGTATATAT-------------------------------------------GTCACTC----CCCGGAGAAC---CCTC--------------------AATTC----C-----------------AAA-C----TT---TATTATT-GACT-------------ATGA-TTT-ATTGCATGGT-AAACA------------------------------------------------------------------------------------------AATCT-----------AAAAAGAAA----------GAGCTACCGCTTT-SizeHit CountTotal NormTotal
No Reads
droBia1
ACGGGTTCCATAGCGGACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTA------------------------------ACCTCAGTTT---------------------------AT--------ATAT-------------------------------------------GTCACAC----CC-------CCACCAAC--------------------AAGTC----C-----------------AAG-CC-ATTA---TGTTGTT-TAAT-------------ATTA-TTT-CTTGCATGCT-AA--A------------------------------------------------------------------------------------------------AAAC-C----AAAGTGAAA--AACCTAACTAGCTTGAGCTTT-SizeHit CountTotal NormTotal
No Reads
droTak1
ACGGGCTCGATAGCGGACGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTC------------------------------TTAT-AATTTGTTTTTCGT--------ATACCTGCCCAT--------AAAT-------------------------------------------GTCGAA----GCC--------------------------------------------C-----------------CAA-CCTGTTA---TGTTGTTATAAT-------------ATCA-TTT-ATTGCATGCC-GA--A------------------------------------------------------------------------------------------------AAAC-G----AAAAAGAAT--AACCTAACTAGCTTGAGCTTT-SizeHit CountTotal NormTotal
No Reads
droEug1
ACGGGTTCAATAGCGGATGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTTCTCT---CGAT-GGCTGTTT------------------------------ATTTCATTT--------------------ATGTTT-------------TGAATTACCCAAATGATAG------------------AT-------GTCATC----CCC--------------------------------------------T-----------------CAG-CC--TTTTTATGTTGTT-TAAT-------------ATAA-TTT-GTTGCATGCA-TG--A------------------------------------------------------------------------------------------AATCA-----------AAAACGAAAATACCTTAACTTGCTTGAGCTTT-SizeHit CountTotal NormTotal
No Reads
dm3
ACGGGCACAATGGCGGATGAGCTGACGCTGTGCAACCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GT--------------TTAAATGCCCAT--------ATATGTC------------------------ACACAATAT-------G--------------------TCCCG------------------------GTTCCACC-----------------CAA-CC--TTT---TGTTGTT-TCAT-------------ATAA-TTT-ATTGCATGCC-GA--A-TGG------------------------------------------------------------------------------------AAAATCAA---------------------------AATAGCTTGAGCTTT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................TGAGCTGACGCTGTGCAACCA---G--------------------C-----------------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AATGGCGGATGAGCTGACGCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AATGGCGGATGAGCTGACGCTGTGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AATGGCGGATGAGCTGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GGCACAATGGCGGATGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................GGTCAGTT--CT---CGAT-GGCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....CACAATGGCGGATGAGCTGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............GATGAGCTGACGCTGTGCAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................TGAGCTGACGCTGTGCAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............GATGAGCTGACGCTGTGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
ACGGGCACAATGGCGGATGAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................GTGCAACCA---G--------------------C-----------------------------------AGCAGCAAGGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGAGCTGACGCTGTGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGGGCACAATGGCGGATGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATGAGCTGACGCTGTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........ATGGCGGATGAGCTGACGCTGTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGGCGGATGAGCTGACGCTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........AATGGCGGATGAGCTGACGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...............GATGAGCTGACGCTGTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................CAACCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GGCACAATGGCGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
................ATGAGCTGACGCTGTGCAACCA---G--------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGGCACAATGGCGGATGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......CAATGGCGGATGAGCTGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTGACGCTGTGCAACCA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GGCACAATGGCGGATGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCACAATGGCGGATGAGCTGACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCACAATGGCGGATGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......CAATGGCGGATGAGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGGCACAATGGCGGATGAGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................GCAACCA---G--------------------C-----------------------------------AGCAGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGTGCAACCA---G--------------------C-----------------------------------AGCAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACGGGCACCATGGCGGATGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GT--------------TTAAGTGCCCAT--------ATATGTC------------------------ACACAATAT-------G--------------------TCCCG------------------------GTCCCACC-----------------AAA-CC--TTT---TGTTGTT-TCAT-------------ATAA-TTT-ATTGCATGCC-GT--A-TAG------------------------------------------------------------------------------------AAAATCAA---------------------------ACTAGCTTGAGCTTT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............GGATGAGCTGACGCTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...........GGCGGATGAGCTGACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.........ATGGCGGATGAGCTGACGCTGTGCACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
...............GATGAGCTGACGCTGTGCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....GCACCATGGCGGATGAGCTGACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
droSec2
ACGGGCACCATGGCGGATGAGCTGACGCTGTGCACCCA---G--------------------C-----------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GT--------------TTAAGTGCCCAT--------ATATGTC------------------------ACACAATAT-------G--------------------TCCCG------------------------GTCCCACC-----------------AAA-CC--TTT---TGTTGTT-TCAT-------------ATAA-TTT-ATTGCATGCC-GT--A-TAG------------------------------------------------------------------------------------AAAATCAA---------------------------ACTAGCTCGAGCTTT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................CACCCA---G--------------------C-----------------------------------AGCAGCAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......ACCATGGCGGATGAGCTGACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
ACGTGCTCTGTAGCGGATGAGCTGACGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT------------------------------ACCTCAGTTT-GTTTAAGT--------TTAAGTGTCCATATATATACATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------GTCCTACT-----------------AAGACT--TTT---TGTTGTT-TACT-------------ATCA-TTT-ATTGCATGCATGA--A-TAGAAAAACCAAAACCAAAACC-----------------------------------------------------------------------------------------AAA--ACCAAAACAAGCTTGAGCTGT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................ATACATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------GTCC................................................................................................................................................................................................................................2711.00101000000000
.................................................................................................................................................................................................................TACATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------....................................................................................................................................................................................................................................2211.00101000000000
.....................................................................................................................................................................................................................................................................................................................GTCCTACT-----------------AAGACT--TTT---TGTTGTT-TACT-------------....................................................................................................................................................................2811.00101000000000
.................................................................................................................................................................................................................TACATAT-------------------------------------------GTCACACAA-----------CTCCC.............................................................................................................................................................................................................................................................2111.00101000000000
.........................CGCTGTGCACCCA---G--------------------CAGC--------------------------------AGCAGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.......CTGTAGCGGATGAGCTGACGCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......CTGTAGCGGATGAGCTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............GATGAGCTGACGCTGTGCACCCA---G--------------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.......CTGTAGCGGATGAGCTGACGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
....................................................................................................................................................................................................................ATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------GT..................................................................................................................................................................................................................................2111.00101000000000
......TCTGTAGCGGATGAGCTGACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......CTGTAGCGGATGAGCTGACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEre2
ACGGGCACCATGGCGGATGAGCTGACGCTGTGCCCCCA---G----------------------------------------------------------CAGCAAGGGTCAGTT--CT---CGAT-GGCTGTTT-----G--T-TTG-----------------AGCTCAGTTT-GT--------------TTAAGTGCCCGT--------ATAT-------------------------------------------GTCACACAA-----------CTCCCG------------------------GTCCTACC-----------------AAG-CC--TTT---TGTTGTT-CACT-------------ATAA-TTT-ATTGCATGCC-GA--A-TGG------------------------------------------------------------------------------------AGCACCAA---------------------------ACTA------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...GGCACCATGGCGGATGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.............CGGATGAGCTGACGCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...........GGCGGATGAGCTGACGCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
....GCACCATGGCGGATGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010

Generated: 06/08/2015 at 02:40 PM