ID:

dpe_420

 Coordinate:

scaffold_0:6908523-6908598 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.5 -21.5 -21.5

Flybase annnotation

intron [Dper\GL24232-in]; CDS [Dper\GL24232-cds]; CDS [Dper\GL24232-cds]

No Repeatable elements found

Sense Strand Reads

TTACCCAAAGAGGGTAGCCAGGAGATTGAAATGAAGGAGTTGTTGTTAACGTGAGTGTAAAGAAGGGAATGAGATCTCTTTTTTGGTTGTATACAGGCAGATCTAATACCCTCCTTTATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA

**************************************************.((((.((((((.((((.((.((((((((....((........)))).)))))).)).)))).))))))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111

male body		 M042

female body

 V057

head

 V050

head

 M021

embryo

 V042

embryo
..................................................GTGAGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 0 1 1300.00 1300 1272 12 11 4 0 1
..................................................GTGAGTGTAAAGAAGGGAATGAG....................................................................................................... 23 0 1 338.00 338 321 10 6 1 0 0
..................................................GTGAGTGTAAAGAAGGGAATGA........................................................................................................ 22 0 1 313.00 313 298 6 8 1 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGA...................................................................................................... 23 0 1 249.00 249 232 12 4 1 0 0
..................................................GTGAGTGTAAAGAAGGGAAT.......................................................................................................... 20 0 1 180.00 180 175 3 2 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGT........................................................................................................ 22 1 1 144.00 144 142 2 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGT...................................................................................................... 24 1 1 142.00 142 136 4 2 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAGT................................................. 24 1 1 132.00 132 10 91 17 14 0 0
..................................................GTGAGTGTAAAGAAGGGAATG......................................................................................................... 21 0 1 103.00 103 97 3 3 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAG....................................................................................................... 22 0 1 55.00 55 43 8 2 2 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGAT..................................................................................................... 25 0 1 47.00 47 46 1 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAG.................................................. 23 0 1 42.00 42 0 38 3 1 0 0
.......................................................TGTAAAGAAGGGAATGAGATCT................................................................................................... 22 0 1 18.00 18 15 3 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGA........................................................................................................ 21 0 1 16.00 16 14 1 1 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGAA..................................................................................................... 25 1 1 12.00 12 12 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGATC.................................................................................................... 26 0 1 10.00 10 10 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGT...................................................................................................... 23 1 1 9.00 9 8 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGTTT...................................................................................................... 24 3 1 9.00 9 9 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGATCT................................................................................................... 27 0 1 8.00 8 8 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGA............................................................................................................ 18 0 1 8.00 8 8 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGAA..................................................................................................... 24 1 1 7.00 7 6 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGTT..................................................................................................... 25 1 1 7.00 7 7 0 0 0 0 0
........................................................................................................AATACCCTCCTTTATCCCTCAGT................................................. 23 1 1 6.00 6 0 6 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATT......................................................................................................... 21 1 1 6.00 6 6 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAA....................................................................................................... 23 1 1 6.00 6 6 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGTTT.................................................................................................... 26 2 1 5.00 5 5 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCA................................................... 22 0 1 5.00 5 0 5 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAGTT................................................ 25 1 1 5.00 5 0 5 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATTT........................................................................................................ 22 2 2 4.50 9 9 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATG......................................................................................................... 20 0 1 4.00 4 3 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGTAATGAGA...................................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
........................................................................................................AATACCCTCCTTTATCCCTCAG.................................................. 22 0 1 4.00 4 0 4 0 0 0 0
.....................................................................................................TCTAATACCCTCCTTTATCCCTC.................................................... 23 0 1 3.00 3 0 3 0 0 0 0
........................................................GTAAAGAAGGGAATGAGA...................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGTT....................................................................................................... 23 2 1 3.00 3 3 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAA........................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAAT.......................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0
...................AGGAGATTGAAATGAAGGAGTTGTT.................................................................................................................................... 25 0 1 3.00 3 0 0 0 0 3 0
..............................................................................................................................GTATGCTGTGGATATCATTGCCT........................... 23 0 1 3.00 3 0 0 0 0 3 0
..................................................GTGAGAGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTC.................................................... 21 0 1 3.00 3 0 3 0 0 0 0
.....................................................AGTGTAAAGAAGGGAATGAGA...................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGATA...................................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TAATACCCGCCTTTATCCCTCAG.................................................. 23 1 1 3.00 3 0 3 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGAAA.................................................................................................... 26 2 1 3.00 3 3 0 0 0 0 0
.............GTAGCCAGGAGATTGAAATGAAGGA.......................................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAT....................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAAGAGGGGAATGAGA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAAGAATGGAATGAGA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TAATACCCACCTTTATCCCTCA................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGATTT................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0
..................................................GTTAGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................ATCTTTGGCCTGGATGTGGACA 22 0 1 2.00 2 1 0 0 0 0 1
..........................................................................................................................................................ATCTTTGGCCTGGATGTGGAC. 21 0 1 2.00 2 0 0 0 0 2 0
..................................................GTGAGAGTAAAGAAGGGAATGAG....................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................GAGTGTAAAGAAGGGAATGAGA...................................................................................................... 22 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................................TAATACCCGCCTTTATCCCTCAGT................................................. 24 2 1 2.00 2 0 2 0 0 0 0
..................................................GTGAGTTTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 2.00 2 1 0 1 0 0 0
.......................................................................................................TAATACCCACCTTTATCCCTCAG.................................................. 23 1 1 2.00 2 0 2 0 0 0 0
...................................................TGAGTTTAAAGAAGGGAATGAGATT.................................................................................................... 25 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGAAATGT........................................................................................................ 22 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGTATGAGA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATTAGA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGAAAA................................................................................................... 26 3 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGG...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAAACAAGGGAATGAGA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...............AGCCAGGAGATTGAAATGAAGGA.......................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
..................................................GTGAGTGTAGAGAAGGGAATGA........................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................TCTAATACCCTCCTTTATCCCT..................................................... 22 0 1 2.00 2 0 1 0 0 1 0
..................................................GTGAGTGTAAAGAAGGGAATGAGC...................................................................................................... 24 1 1 2.00 2 1 0 0 1 0 0
........................................................................................................AATACCCTCCTTTATCCCTCAGG................................................. 23 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TAATACCCACCTTTATCCCTCCG.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................ATCTAATACCCTCCTTTATCCCTC.................................................... 24 0 1 1.00 1 0 0 1 0 0 0
........................................................GTAAAGAAGGGAATGAGATCT................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCCCCTTTATCCCTCAGT................................................. 24 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAATAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAAGACCCTCCGTTATCCCTCA................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGTAAAGAGGGGAATGAG....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................TGCCTCGACCATCTTTGGCCTG.......... 22 0 1 1.00 1 0 0 0 0 1 0
..................................................GTGGGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
............................................................................TCTTTTTTGGTTGTATACAGGC.............................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TAATACCCGCCTTTATCCCTCA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................CTAATACCTTCCTTTATCCCTCAGT................................................. 25 2 1 1.00 1 0 1 0 0 0 0
...........GGGTAGCCAGGAGATTGAAATGAAGG........................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................CATTGCCTCGACCATCTTTGGC............. 22 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGCGA...................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0
..................................................GTCAGTGTAAAGAAGGGAATGAGT...................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.....CAAAGAGGGTAGCCAGGAG........................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTGTGAAGAAGGGAATGAGA...................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.........GAGGGTAGCCAGGAGATTGA................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TCTAATACCCTCCTTTATCCC...................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................GTGTAAAGAAGGGAATGAG....................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAGGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............AGCCAGGAGATTGAAATGAAGGAGTT....................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.............GTAGCCAGGAGATTGAAATGAAGGAGTT....................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0
................GCCAGGAGCTTGAAATGAAGG........................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAACGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................CTAATACCCTCCTTTATCCCTCAG.................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.....CAAAGAGGGTAGCCAGGAGATTGA................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................TGTAAAGAAGGGAATGAGATC.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................TGAGTAAAGAAGGGAATGAGATCTCT................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGCGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................ATGAGAGTAAAGAAGGGAATGAG....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCCTT................................................. 24 3 1 1.00 1 0 0 0 1 0 0
..................................................GTGAATGTAAAGAAGGGAATG......................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..................................................GAGAGTGTAAAGAAGGGAATGAG....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGTAT.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGT........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGCAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................GTATGCTGTGGATATCATTGCCC........................... 23 1 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTGTAAAGAAGGGAATGATT...................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.............GTAGCCAGGAGATTGAAATGAAG............................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGC........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
............................AAATGAAGGAGTTGTTGTTAAC.............................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTATAAAGAAGGGAATGAGAA..................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.......................GATTGAAATGAAGGAGTTGTTGTT................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
............................................................................TCTTTTTTGGTTGTATACAGG............................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAAA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...................AGGAGATTGAAATGAAGGAGTTGTC.................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0
......................................................................................................GTAATACCCTCCTTTATCCCTCAGT................................................. 25 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAATGTAAAGAAGGGAATGAG....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCTGT................................................. 24 2 1 1.00 1 0 0 1 0 0 0
.............GTAGCCAGGAGATTGAAATGAAGGAGT........................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
....................GGAGATTGAAATGAAGGAGTT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0
...................................................TGAGTGTAGAGAAGGGAATGAGA...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................GGGAGTGGAAAGAAGGGAATGAGC...................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................GTTAGTGTAAAGAAGGGAATGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTAGTGTAAAGAAGGGAAT.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCGCCTTTATCCCTCAGTT................................................ 25 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGTAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TAATACACTCCTTTATCCCTCATG................................................. 24 2 1 1.00 1 0 0 1 0 0 0
............GGTAGCCAGGAGATTGAAATGAAGG........................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TAATACCATCCTTTATCCCTCAGT................................................. 24 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGCAAT.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGGGTGTAAAGAAGGGAATGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGTGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGCAATGAGA...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AATACCCTCCTTTATCCCTCAGTA................................................ 24 2 1 1.00 1 0 1 0 0 0 0
..................................................GTCAGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGAAAAGAAGTGAATGAG....................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.............GTAGCCAGGAGATTGAAATG............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGTAATGAG....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATAA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
........................................................GTAAAGAAGGGAATGAGATC.................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGGAGGGAATGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGATCC................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGCGTAAAGAAGGGAATGAG....................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGATTTT.................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAATAAGGGAATGATA...................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................TGTAATGAAGGGAATGAGATCT................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...................................................TGAGTGTACAGAAGGGAATGAGA...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TAATACCCTCCTCTATCCCTCA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAATGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AATACCCTCTTTTATCCCTCAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTTTAAAGAAGGGAATGAGACT.................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
......................................................................................................CTAATACCCTCCTTTATCCCTCAGT................................................. 25 1 1 1.00 1 0 0 0 0 0 1
..................................................GTGACTGTAAAGAACGGAATGT........................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TCATACCCTCCTTTATCCCTCAGT................................................. 24 2 1 1.00 1 0 0 1 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAT....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAGC................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTGTAAGGGAGGGAATGAGA...................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATAAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AATACCCTGCTTTATCCCTCAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGAATGGAATGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGGGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
...................................................TGAGTGTAAAGAGGGGAATGAGA...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAGAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.............GTAGCCAGGAGATTGAAATGAA............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGTGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGATCT................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAGAAA.................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAACGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGATA...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAACAAGGGAATGAG....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAGTA................................................ 25 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGGATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGAAAAGAAGGGAATG......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTGAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTGTAAAGAATGGAATGAGAA..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TCTAATACCCTCCTTTATCC....................................................... 20 0 1 1.00 1 0 0 0 1 0 0
..................................................GTGAGTGTGAAGAAGGGAATGAGAT..................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGGATGAG....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGATTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................ATGAGTGTAAAGAAGGGAATGT........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGGAAAGAAGGGAATGAG....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................CGTATGCTGTGGATATCATTGCCT........................... 24 1 1 1.00 1 0 0 0 0 1 0
..................................................GTGAGTGCAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGATT.................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCC...................................................... 19 0 1 1.00 1 0 1 0 0 0 0
......................................................GTGTAAAGAAGGGAATGAGAT..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATGAA....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTGAAGAAGGGAAT.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGGGTAAGGAAGGGAATGAG....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGAGTGTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................TAACGTATGCTGTGGATATCATTGCCT........................... 27 2 1 1.00 1 0 0 0 0 1 0
..................................................GTGTGTGTAAAGAAGGGAATGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAAGGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGAATGAGATA.................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAGTTT............................................... 26 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGAAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTCTAAAGAAGGGAATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TAATACCCTACTTTATCCCTCAGT................................................. 24 2 1 1.00 1 0 0 0 1 0 0
..................................................GTGAGTGTAAAGAAGGGAATGTTTT..................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTGTAGAGAAGGGAATGA........................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTGAAGAAGGGAATGAG....................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGTAAAGCAGGGAATGAGT...................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................ATGAGTGTAAAGAAGGGAATGA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGAGTAAAGAAGGGAATG......................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..................................................GTGAGTTTAAAGAAGGGAAT.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAGAAGGGCATGAGA...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGTAGAGAAGGGAATGT........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................CTTTGGCCTGGATGTGGACA 20 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TAATACCCTCCTTTATCCCTCAGG................................................. 24 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGGGTAGGGAAGGGAATGAGA...................................................................................................... 24 3 2 0.50 1 0 0 1 0 0 0
..................................................GTGGGCGTAAAGAAAGGAATGA........................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0
..................................................GTGAGTGTAAAGAAGGGGATGT........................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0
...................................................TGAGTGTAAAGAAGGGAATTT........................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0
..................................................GTGAGTGTAAAAAAGGGAATGT........................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0
..................................................GTGTGTGCAAAGCAGGGAATGA........................................................................................................ 22 3 3 0.33 1 0 0 1 0 0 0
..................................................................GATTGAGAGCTCTTTCTTGGT......................................................................................... 21 3 6 0.17 1 0 0 0 0 0 1

Anti-sense strand reads

AATGGGTTTCTCCCATCGGTCCTCTAACTTTACTTCCTCAACAACAATTGCACTCACATTTCTTCCCTTACTCTAGAGAAAAAACCAACATATGTCCGTCTAGATTATGGGAGGAAATAGGGAGTCCATACGACACCTATAGTAACGGAGCTGGTAGAAACCGGACCTACACCTGT

**************************************************.((((.((((((.((((.((.((((((((....((........)))).)))))).)).)))).))))))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042

female body

 V057

head

 V111

male body		 M021

embryo

 V050

head
................................................................................................................GGAAACTGGGAGTCCATA.............................................. 18 2 2 17.00 34 32 2 0 0 0
...............................................................................................................CGGAAACTGGGAGTCCATA.............................................. 19 3 12 6.00 72 36 35 0 0 1
..............................................................................................................GCGGAAACTGGGAGTCCATA.............................................. 20 3 1 5.00 5 2 0 3 0 0
.........................................................................................................................GAGTCCATAGGACACCTAAAGT................................. 22 2 1 1.00 1 0 1 0 0 0
..........................................................................................................ATGGGAGGAAGTAGGGAGT................................................... 19 1 1 1.00 1 0 0 1 0 0
..............................................................................................................GCGGAAACTGGGAGTCCAT............................................... 19 3 7 0.57 4 3 0 0 1 0
................................................................................................................GGAAACTGGGAGTCCATACGC........................................... 21 3 2 0.50 1 1 0 0 0 0
...............................................................................................................CGGAAACAGGGAGTCCATAG............................................. 20 3 8 0.13 1 0 0 1 0 0
......................................................................................................................TGGGAGTCCATAGTACACC....................................... 19 3 10 0.10 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:6908473-6908648 + dpe_420 TTACCCAAAGAG---GGTAG-CCAGGAGATTGAAATG-AAGGAGTTGTTGTTAACGTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CTCTTTTTTGGTTGTATACAGG-----------CAGATCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA
dp5 2:13541116-13541291 - TTACCCAAAGAG---GGTAG-CCAGGAGATTGAAATG-AAGGAGTTGTTGTTAACGTGAGTCTAAAGAAGG-------------------------------------------GAATAAG--------AT-----------------------------------------------------------------CTCTTTTTGGGTTGTATACAGG-----------CAGATCTAATGCC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA
droWil2 scf2_1100000004921:1996138-1996302 + TTGCCACAGGAA---GGTAG-CAAGGAGATTGACATT-AAGCAATTATTAACCACGTGAGTTGTCCAG----------------------------------------------GAATTCA--------ATCTATTGAATTTGTTTGC---------------------------------------------------------------A------------------------------------------------------------------------TTCCGAATAT-----------------------TATTCTG--TTTTTCAGCTATGCCATTGACATCATAGGTTCGACCATTTTTGGCCTGGACGTGGATA
droVir3 scaffold_12822:3647853-3648029 + ATACAGCAGTCG---GGCAC-TGTGGAAATCGATGTA-AAGAACTTGATGTCATGGTAGGTTAGCAGT-----------------------------------------------------CGACT---------TTG------------------------------------------------------------------CAGTGGAGT--ATTTCATGCTTAGACAAATTTC--TCCCCTTCTC--------------------------------------------------------------------CGTTTGC--ACTTTTAGCTTTGTGATTGACATTATTGCCTCGACCATATTTGGCCTGGATGTGGACA
droMoj3 scaffold_6540:16962620-16962783 + CTACAGCAGTCA---GGCGC-AACTGAAATCGATATG-AAGAATTTAATGGCATGGTAAGCAACTGTT-------------------------------------------------TGTGC---------------------------------------------------------------------------ATTACCTTAGCT----TCATG-----------AAGATCCTTCATT------------TCCCCA--------------------------------------------------------------T--TGCTTTCAGCTATGGTATTGATATCATTGCCTCCACTATACTTGGTTTGGATGTGGACA
droGri2 scaffold_14906:1255381-1255552 + ATGCAGCGGTCA---GGCAC-TGTAGAAGTCGATATG-AAGAATTTGATGTCATCGTAAGCAATTTTT----------------------------------------------GAAA---ATACACACATTTACTGGATATATATGT----------------------------------------------------------------------------------------ATTTTCCCGCCTT--------------------------------------------------------------------GAACTGT--TTTTTCAGCTATGCTATTGATATTATTGCCTCGACGATATTTGGCCTAGATGTGGACA
droAna3 scaffold_13340:20621150-20621307 - GTTCCAAAAACA---GGAAG-CATAGAGTTGGAGATG-AAGGCCTGGATGTCCACGTAAGTCGTGGCA-----------------------------------------------------A---------------------------------------------------------------------------TCTTCTTCAGCTCCAA--AATT-----------AATCCTAATA--------------CTACTT--------------------------------------------------------------T----ATCGTAGATATGCCATCGATATCATAGCCTCAACCATTTTTGGACTTGAAGTGGACA
droBip1 scf7180000396413:1781985-1782139 + CTGCCCCAATCG---GGCAG-CAAGGAAGTGGAAATA-AAGGAACTTTTTGCCACGTGAGTCAATGAA----------------------------------------------------G--------AT-----------------------------------------------------------------CTTTTC--AAG----------------ATTGGA-------------------------------------------------------ACCCAAAAA------------------------CACTCGT--CCTCCTAGGTATGCTGTTGACATCATTGGCTCGACCATTTTCGGCCTGGATGTGGACA
droKik1 scf7180000302634:848696-848902 - GAATGTGAGCAGTCCGGGGG-CAAGGAATTGGACATG-AAGAGCGTCATGACAACGTGAGTTGGCGGA-----------------------------------------------------AAACC--------------------------------------------------------------------------------------------------------------TTGATT------------CTCTCAGTGCACCCTGGAAATTTGTTTATCTCTGGAACGTAAATTTCAATTATATTTGGTTTTTATTCGTTCCTCCCTAGTTACGCGATTGATATAGTTGCCTCGACTATTTTTGGCCTGGAGGTAGACA
droFic1 scf7180000454055:301018-301117 - CTCCCAGAACAA---GGTTT-CAAGGAGGTGGATCTC-AAGAAAGTGATGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATCGATATAATTGCTTCGACTATTTTTGGTTTGGATGTGAATA
droEle1 scf7180000491047:1311598-1311853 - CTACCTGAGACA---GGCAT-CAAAGAGCTGGATATC-AAGAGTCTAACGTCAACGTAGGTTAAAAACTTCGAGTGAAATATAGAAAATATAAGGGTTTTATCAAACGTTTAAGACCATTA--------AACCATTTCAAATGCTTGCATCTCTCGCTATAACTGCTGACCTTACCAGAGAAAAAACGAATAAGCTCAATTTTT-----------------------------------------------------------------------------------------------------------------TATTCCT--ACTCCCAGCTATGCTATTGATATTATTGCCTCGACTATTTTCGGCCTTGATGTTGATA
droRho1 scf7180000777285:97121-97220 - CTACCGGAACAA---GGTTC-CGAGGAGGTGGATCTG-AAGAAAGTAATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATGCCATCGACATCATTGCCTCGACCATTTTCGGCTTGGACGTGAACA
droBia1 scf7180000302402:5187575-5187674 - CTGCCAGAGAAG---GATTT-CGAGGAGGTGGATCTC-AAGAAGGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTACGCTATCGACATTATTGCCTCGACCATCTTTGGCTTGGACGTAAACA
droTak1 scf7180000415380:737526-737698 + TCCC-CCAGGGG---GGCAA-CAAGGAGGTGGACATC-AAGAAACTAATGTCAACGTAAGTTATTGGA-----------------------------------------------------ATATTAATATTAATCCGAAGAGAAAGA----------------------------------------------------------------------------------------TTATAACGATCTTCATTTCTTCTT--------------------------------------------------------------A--ATCCGCCAGATATGCCATCGATATCATTGGCACGACTATTTTTGGACTTAATGTCGATA
droEug1 scf7180000409802:95316-95512 - TTGCCTGAGACG---GGCAG-CAAGGAG-TTGATATC-AAGAGTCTAATGTCAACGTAAGTCAAAGGATTAAAAGGA-------------------------------------TAACAAA-------------------GTTTTTATACCTCCTTTAATAGTTGCTGAACTTATA--------------------------------T----T---A-----------AATAACTAATATT------------CT-------------------------------------------------------------AATTCCA--ACCCGTAGATATGCCATCGATATTATTGCCACAAGCATTTTTGGCCTTGACGTTGATA
dm3 chr2R:4452853-4452974 - TGCCATGGACAA---GGCGGTGAAGGAGGCCAAAGTGGAGGAGGGTAATGTGGAGATTAAGGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TGTGCCCGGTTTACCACGGATGTCATCGGATCGTGCGCCTTCGGGTTGGAGTGCAACA
droSim2 3r:18049870-18049969 + CTGCCGGAGGAG---GGCTT-CAAGGAGGTGGACATG-AAGAAAGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGACATCATAGCCTCGACTATCTTTGGCTTGGATGTGAATA
droSec2 scaffold_0:12159106-12159159 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATACGCCATCGACATTATTGCCACGACTATTTTTGGACTAGATGTAGATA
droYak3 3R:19375236-19375335 + CTGCCGGAGGAG---GGCTT-CAAGGAGGTGGATGTA-AAGAAAGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGATATCATAGCCTCCACTATCTTTGGCTTGGATGTGAACA
droEre2 scaffold_4820:9551561-9551660 - CTGCCGGAGGAG---GGCTT-CAAGGAGGTGGATATG-AAGAAAGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGATATAATAGCCTCGACTATCTTTGGCTTGGATGTAAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TTACCCAAAGAG---GGTAG-CCAGGAGATTGAAATG-AAGGAGTTGTTGTTAACGTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CTCTTTTTTGGTTGTATACAGG-----------CAGATCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------A..............................................................................................................................................................................................................................................................2411300.00130001214111272
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------...............................................................................................................................................................................................................................................................231338.00338010016321
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGA........................................................................................................................................................................................................................................................................221313.0031306018298
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------A..............................................................................................................................................................................................................................................................231249.00249012014232
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAAT..........................................................................................................................................................................................................................................................................201180.0018003002175
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGT........................................................................................................................................................................................................................................................................221144.0014402000142
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------T..............................................................................................................................................................................................................................................................241142.0014204002136
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGT.................................................241132.001320910141710
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATG.........................................................................................................................................................................................................................................................................211103.001030300397
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------...............................................................................................................................................................................................................................................................22155.00550802243
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------............................................................................................................................................................................................25147.00470100046
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAG..................................................23142.00420380130
............................................................TGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CT..........................................................................................................................................................................................22118.00180300015
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGA........................................................................................................................................................................................................................................................................21116.00160100114
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AA-----------------------------------------------------------------............................................................................................................................................................................................25112.00120000012
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------C...........................................................................................................................................................................................26110.00100000010
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------T..............................................................................................................................................................................................................................................................2319.009000018
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGTT--------T..............................................................................................................................................................................................................................................................2419.009000009
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CT..........................................................................................................................................................................................2718.008000008
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GA............................................................................................................................................................................................................................................................................1818.008000008
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AA-----------------------------------------------------------------............................................................................................................................................................................................2417.007000016
............................................................................................................................................................................................................................................AATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGT.................................................2316.006060000
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATT.........................................................................................................................................................................................................................................................................2116.006000006
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAA--------...............................................................................................................................................................................................................................................................2316.006000006
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCA...................................................2215.005050000
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATTT........................................................................................................................................................................................................................................................................2224.509000009
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATG.........................................................................................................................................................................................................................................................................2014.004000013
............................................................................................................................................................................................................................................AATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAG..................................................2214.004040000
.........................................................................................................................................................................................................................................TCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTC....................................................2313.003030000
.............................................................GTAAAGAAGG-------------------------------------------GAATGAG--------A..............................................................................................................................................................................................................................................................1813.003000003
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGTT--------...............................................................................................................................................................................................................................................................2313.003000003
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAA...........................................................................................................................................................................................................................................................................1913.003000003
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAAT..........................................................................................................................................................................................................................................................................1913.003010002
.......................AGGAGATTGAAATG-AAGGAGTTGTT...............................................................................................................................................................................................................................................................................................................................................2513.003300000
..............................................................................................................................................................................................................................................................................................................................................GTATGCTGTGGATATCATTGCCT...........................2313.003300000
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTC....................................................2113.003030000
..........................................................AGTGTAAAGAAGG-------------------------------------------GAATGAG--------A..............................................................................................................................................................................................................................................................2113.003000003
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AA-----------------------------------------------------------------A...........................................................................................................................................................................................2613.003000003
................GTAG-CCAGGAGATTGAAATG-AAGGA.....................................................................................................................................................................................................................................................................................................................................................2513.003010002
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAT--------...............................................................................................................................................................................................................................................................2312.002000002
..........................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGGACA2212.002001001
..........................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGGAC.2112.002200000
.........................................................GAGTGTAAAGAAGG-------------------------------------------GAATGAG--------A..............................................................................................................................................................................................................................................................2212.002010001
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AA-----------------------------------------------------------------AA..........................................................................................................................................................................................2612.002000002
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------G..............................................................................................................................................................................................................................................................2412.002000002
..................AG-CCAGGAGATTGAAATG-AAGGA.....................................................................................................................................................................................................................................................................................................................................................2312.002000002
.........................................................................................................................................................................................................................................TCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCT.....................................................2212.002110000
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------C..............................................................................................................................................................................................................................................................2412.002000101
............................................................................................................................................................................................................................................AATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGG.................................................2311.001010000
........................................................................................................................................................................................................................................ATCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTC....................................................2411.001000010
.............................................................GTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CT..........................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACCATCTTTGGCCTG..........2211.001100000
.....................................................................................................................................................................................................TCTTTTTTGGTTGTATACAGG-----------C..........................................................................................................................................................2211.001010000
...........G---GGTAG-CCAGGAGATTGAAATG-AAGG......................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................CATTGCCTCGACCATCTTTGGC.............2211.001010000
.....CAAAGAG---GGTAG-CCAGGAG....................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........GAG---GGTAG-CCAGGAGATTGA...............................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................TCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCC......................................................2111.001010000
...........................................................GTGTAAAGAAGG-------------------------------------------GAATGAG--------...............................................................................................................................................................................................................................................................1911.001000001
..................AG-CCAGGAGATTGAAATG-AAGGAGTT..................................................................................................................................................................................................................................................................................................................................................2611.001000001
................GTAG-CCAGGAGATTGAAATG-AAGGAGTT..................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................CTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAG..................................................2411.001010000
.....CAAAGAG---GGTAG-CCAGGAGATTGA...............................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................TGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------C...........................................................................................................................................................................................2111.001000001
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCCTT.................................................2411.001000100
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGT........................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................GTATGCTGTGGATATCATTGCCC...........................2311.001100000
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAT--------T..............................................................................................................................................................................................................................................................2411.001000001
................GTAG-CCAGGAGATTGAAATG-AAG.......................................................................................................................................................................................................................................................................................................................................................2311.001000001
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGC........................................................................................................................................................................................................................................................................2211.001000001
................................AAATG-AAGGAGTTGTTGTTAAC.........................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................GATTGAAATG-AAGGAGTTGTTGTT............................................................................................................................................................................................................................................................................................................................................2411.001000001
.....................................................................................................................................................................................................TCTTTTTTGGTTGTATACAGG-----------...........................................................................................................................................................2111.001010000
.......................AGGAGATTGAAATG-AAGGAGTTGTC...............................................................................................................................................................................................................................................................................................................................................2511.001100000
................GTAG-CCAGGAGATTGAAATG-AAGGAGT...................................................................................................................................................................................................................................................................................................................................................2711.001000001
........................GGAGATTGAAATG-AAGGAGTT..................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............GGTAG-CCAGGAGATTGAAATG-AAGG......................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................................AATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGTA................................................2411.001010000
................GTAG-CCAGGAGATTGAAATG-..........................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............................................................GTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------C...........................................................................................................................................................................................2011.001010000
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CC..........................................................................................................................................................................................2611.001000001
..........................................................................................................................................................................................................................................CTAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGT.................................................2511.001001000
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAT--------...............................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGC.................................................2411.001010000
................GTAG-CCAGGAGATTGAAATG-AA........................................................................................................................................................................................................................................................................................................................................................2211.001000001
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------CT..........................................................................................................................................................................................2611.001000001
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AA-----------------------------------------------------------------A...........................................................................................................................................................................................2511.001000001
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGTA................................................2511.001010000
.........................................................................................................................................................................................................................................TCTAATACC------------CTCCTT--------------------------------------------------------------T--ATCC.......................................................2011.001000100
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------T...........................................................................................................................................................................................2611.001000001
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCC......................................................1911.001010000
...........................................................GTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------............................................................................................................................................................................................2111.001000001
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATGAA--------...............................................................................................................................................................................................................................................................2211.001000001
.......................................................GTGAGTGTAAAGAAGG-------------------------------------------GAATGAG--------AT-----------------------------------------------------------------A...........................................................................................................................................................................................2611.001000001
............................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCTGGATGTGGACA2011.001010000
...........................................................................................................................................................................................................................................TAATACC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGG.................................................2411.001010000
........................................................TGAGTGTAAAGAAGG-------------------------------------------GAATTT........................................................................................................................................................................................................................................................................2120.501000001
dp5
TTACCCAAAGAG---GGTAG-CCAGGAGATTGAAATG-AAGGAGTTGTTGTTAACGTGAGTCTAAAGAAGG-------------------------------------------GAATAAG--------AT-----------------------------------------------------------------CTCTTTTTGGGTTGTATACAGG-----------CAGATCTAATGCC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................GTGAGTCTAAAGAAGG-------------------------------------------GAATAAG--------...............................................................................................................................................................................................................................................................2318.0080600002000
.......................................................GTGAGTCTAAAGAAGG-------------------------------------------GAATAAG--------A..............................................................................................................................................................................................................................................................2415.0050400001000
...........................................................................................................................................................................................................................................TAATGCC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGT.................................................2415.0050300011000
..........................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGGACA2214.0040300001000
.......................................................GTGAGTCTAAAGAAGG-------------------------------------------GAAT..........................................................................................................................................................................................................................................................................2012.0020100001000
............................................................................................................................................................................................................................................AATGCC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAGT.................................................2312.0020200000000
................GTAG-CCAGGAGATTGAAATG-AAGGA.....................................................................................................................................................................................................................................................................................................................................................2512.0020100100000
..........................................................................................................................................................................................................................................................................................................................................................TATCATTGCCTCGACCATCTTTGGC.............2512.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................GACCATCTTTGGCCTGGATGTGGACA2612.0020200000000
...........................................................................................................................................................................................................................................TAATGCC------------CTCCTT--------------------------------------------------------------T--ATCCCTCAG..................................................2312.0020200000000
........................................................TGAGTCTAAAGAAGG-------------------------------------------GAATAAG--------...............................................................................................................................................................................................................................................................2212.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGG...1911.0010100000000
........................................................TGAGTCTAAAGAAGG-------------------------------------------GAATAAG--------A..............................................................................................................................................................................................................................................................2311.0010100000000
.......................................................GTGAGTCTAAAGAAGG-------------------------------------------GAATAA........................................................................................................................................................................................................................................................................2211.0010000001000
..................AG-CCAGGAGATTGAAATG-AAGG......................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................GTGAGTCTAAAGAAGG-------------------------------------------GAATA.........................................................................................................................................................................................................................................................................2111.0010000001000
......................CAGGAGATTGAAATG-AAGG......................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACCATCTTTGGCCT...........2120.5010100000000
droWil2
TTGCCACAGGAA---GGTAG-CAAGGAGATTGACATT-AAGCAATTATTAACCACGTGAGTTGTCCAG----------------------------------------------GAATTCA--------ATCTATTGAATTTGTTTGC---------------------------------------------------------------A------------------------------------------------------------------------TTCCGAATAT-----------------------TATTCTG--TTTTTCAGCTATGCCATTGACATCATAGGTTCGACCATTTTTGGCCTGGACGTGGATASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
ATACAGCAGTCG---GGCAC-TGTGGAAATCGATGTA-AAGAACTTGATGTCATGGTAGGTTAGCAGT-----------------------------------------------------CGACT---------TTG------------------------------------------------------------------CAGTGGAGT--ATTTCATGCTTAGACAAATTTC--TCCCCTTCTC--------------------------------------------------------------------CGTTTGC--ACTTTTAGCTTTGTGATTGACATTATTGCCTCGACCATATTTGGCCTGGATGTGGACASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................CGATGTA-AAGAACTTGATGT.............................................................................................................................................................................................................................................................................................................................................2013.0030020000000000000010000000000000000000000000000000000000000000000000000000000000
..........CG---GGCAC-TGTGGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000001000000000000000000000000000000000000000000000001000000000
................GCAC-TGTGGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................GATGTA-AAGAACTTGATGTC............................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000200000
.........................GAAATCGATGTA-AAGAACTTGATGTC............................................................................................................................................................................................................................................................................................................................................2612.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
..............................CGATGTA-AAGAACTTGATGTC............................................................................................................................................................................................................................................................................................................................................2112.0020000000000000001000000000000000000000000000000000000000000000000000001000000000
............................ATCGATGTA-AAGAACTTGAT...............................................................................................................................................................................................................................................................................................................................................2012.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
...........................AATCGATGTA-AAGAACTTGATGT.............................................................................................................................................................................................................................................................................................................................................2312.0020000000000000010010000000000000000000000000000000000000000000000000000000000000
......CAGTCG---GGCAC-TGTGGAA....................................................................................................................................................................................................................................................................................................................................................................1812.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AATCGATGTA-AAGAACTTGAT...............................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000001000100000
..ACAGCAGTCG---GGCAC-TGTGGAAAT..................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAC-TGTGGAAATCGATGTA-AAG.......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
....AGCAGTCG---GGCAC-TGTGGA.....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................CGATGTA-AAGAACTTGAT...............................................................................................................................................................................................................................................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TCGACCATATTTGGCCTGGATGT.....2311.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...............GGCAC-TGTGGAAATCGATGTA-..........................................................................................................................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
ATACAGCAGTCG---GGCAC-T..........................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...CAGCAGTCG---GGCAC-TGTGGAAATC.................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........G---GGCAC-TGTGGAAATCGATGTA-A.........................................................................................................................................................................................................................................................................................................................................................2311.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGTA-AAGAACTTGATGTCAT..........................................................................................................................................................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............GGCAC-TGTGGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................2011.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
........GTCG---GGCAC-TGTGGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTGGAAATCGATGTA-AAGAACTT..................................................................................................................................................................................................................................................................................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTGACATTATTGCCTCGACCA.....................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........CG---GGCAC-TGTGGAAATCGATGTA-A.........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.TACAGCAGTCG---GGCAC-TGT........................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGTA-AAGAACTTGATGTCA...........................................................................................................................................................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
ATACAGCAGTCG---GGCAC-TGT........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
....AGCAGTCG---GGCAC-TGTGGAAAT..................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
................GCAC-TGTGGAAATCGATGTA-AAGAACTTGA................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
..........CG---GGCAC-TGTGGAAATCGATGTA-AAG.......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
ATACAGCAGTCG---GGCAC-TGG........................................................................................................................................................................................................................................................................................................................................................................2011.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACCATATTTGGCCTGGATG......2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..ACAGCAGTCG---GGCAC-TGTG.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTATTGCCTCGACCATATTT................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
....AGCAGTCG---GGCAC-TGTGGAAATCGAT..............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
droMoj3
CTACAGCAGTCA---GGCGC-AACTGAAATCGATATG-AAGAATTTAATGGCATGGTAAGCAACTGTT-------------------------------------------------TGTGC---------------------------------------------------------------------------ATTACCTTAGCT----TCATG-----------AAGATCCTTCATT------------TCCCCA--------------------------------------------------------------T--TGCTTTCAGCTATGGTATTGATATCATTGCCTCCACTATACTTGGTTTGGATGTGGACASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................GC-AACTGAAATCGATATG-AAGA......................................................................................................................................................................................................................................................................................................................................................2212.002100001
CTACAGCAGTCA---GGCGC-AAC........................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................GTATTGATATCATTGCCTCCACTAT....................2511.001100000
..................................ATG-AAGAATTTAATGGCAT..........................................................................................................................................................................................................................................................................................................................................1911.001100000
................GCGC-AACTGAAATCGATATG-AAGA......................................................................................................................................................................................................................................................................................................................................................2411.001000001
....AGCAGTCA---GGCGC-AACTGAAATC.................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................ATTGATATCATTGCCTCCACT......................2111.001100000
.........................GAAATCGATATG-AAGAATTTAATGGC............................................................................................................................................................................................................................................................................................................................................2611.001100000
......................................................................................................................................................................................................................................AGATCCTTCATT------------TCCCCA--------------------------------------------------------------T--TGCTTTCAG..................................................2811.001100000
droGri2
ATGCAGCGGTCA---GGCAC-TGTAGAAGTCGATATG-AAGAATTTGATGTCATCGTAAGCAATTTTT----------------------------------------------GAAA---ATACACACATTTACTGGATATATATGT----------------------------------------------------------------------------------------ATTTTCCCGCCTT--------------------------------------------------------------------GAACTGT--TTTTTCAGCTATGCTATTGATATTATTGCCTCGACGATATTTGGCCTAGATGTGGACASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
GTTCCAAAAACA---GGAAG-CATAGAGTTGGAGATG-AAGGCCTGGATGTCCACGTAAGTCGTGGCA-----------------------------------------------------A---------------------------------------------------------------------------TCTTCTTCAGCTCCAA--AATT-----------AATCCTAATA--------------CTACTT--------------------------------------------------------------T----ATCGTAGATATGCCATCGATATCATAGCCTCAACCATTTTTGGACTTGAAGTGGACASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....AAAAACA---GGAAG-CATAGAGT...................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
CTGCCCCAATCG---GGCAG-CAAGGAAGTGGAAATA-AAGGAACTTTTTGCCACGTGAGTCAATGAA----------------------------------------------------G--------AT-----------------------------------------------------------------CTTTTC--AAG----------------ATTGGA-------------------------------------------------------ACCCAAAAA------------------------CACTCGT--CCTCCTAGGTATGCTGTTGACATCATTGGCTCGACCATTTTCGGCCTGGATGTGGACASizeHit CountTotal NormTotal
No Reads
droKik1
GAATGTGAGCAGTCCGGGGG-CAAGGAATTGGACATG-AAGAGCGTCATGACAACGTGAGTTGGCGGA-----------------------------------------------------AAACC--------------------------------------------------------------------------------------------------------------TTGATT------------CTCTCAGTGCACCCTGGAAATTTGTTTATCTCTGGAACGTAAATTTCAATTATATTTGGTTTTTATTCGTTCCTCCCTAGTTACGCGATTGATATAGTTGCCTCGACTATTTTTGGCCTGGAGGTAGACASizeHit CountTotal NormTotal
No Reads
droFic1
CTCCCAGAACAA---GGTTT-CAAGGAGGTGGATCTC-AAGAAAGTGATGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATCGATATAATTGCTTCGACTATTTTTGGTTTGGATGTGAATASizeHit CountTotal NormTotal
No Reads
droEle1
CTACCTGAGACA---GGCAT-CAAAGAGCTGGATATC-AAGAGTCTAACGTCAACGTAGGTTAAAAACTTCGAGTGAAATATAGAAAATATAAGGGTTTTATCAAACGTTTAAGACCATTA--------AACCATTTCAAATGCTTGCATCTCTCGCTATAACTGCTGACCTTACCAGAGAAAAAACGAATAAGCTCAATTTTT-----------------------------------------------------------------------------------------------------------------TATTCCT--ACTCCCAGCTATGCTATTGATATTATTGCCTCGACTATTTTCGGCCTTGATGTTGATASizeHit CountTotal NormTotal
No Reads
droRho1
CTACCGGAACAA---GGTTC-CGAGGAGGTGGATCTG-AAGAAAGTAATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATGCCATCGACATCATTGCCTCGACCATTTTCGGCTTGGACGTGAACASizeHit CountTotal NormTotal
No Reads
droBia1
CTGCCAGAGAAG---GATTT-CGAGGAGGTGGATCTC-AAGAAGGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTACGCTATCGACATTATTGCCTCGACCATCTTTGGCTTGGACGTAAACASizeHit CountTotal NormTotal
No Reads
droTak1
TCCC-CCAGGGG---GGCAA-CAAGGAGGTGGACATC-AAGAAACTAATGTCAACGTAAGTTATTGGA-----------------------------------------------------ATATTAATATTAATCCGAAGAGAAAGA----------------------------------------------------------------------------------------TTATAACGATCTTCATTTCTTCTT--------------------------------------------------------------A--ATCCGCCAGATATGCCATCGATATCATTGGCACGACTATTTTTGGACTTAATGTCGATASizeHit CountTotal NormTotal
No Reads
droEug1
TTGCCTGAGACG---GGCAG-CAAGGAG-TTGATATC-AAGAGTCTAATGTCAACGTAAGTCAAAGGATTAAAAGGA-------------------------------------TAACAAA-------------------GTTTTTATACCTCCTTTAATAGTTGCTGAACTTATA--------------------------------T----T---A-----------AATAACTAATATT------------CT-------------------------------------------------------------AATTCCA--ACCCGTAGATATGCCATCGATATTATTGCCACAAGCATTTTTGGCCTTGACGTTGATASizeHit CountTotal NormTotal
No Reads
dm3
TGCCATGGACAA---GGCGGTGAAGGAGGCCAAAGTGGAGGAGGGTAATGTGGAGATTAAGGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TGTGCCCGGTTTACCACGGATGTCATCGGATCGTGCGCCTTCGGGTTGGAGTGCAACASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................................................................................................................................................................................................................................................................TCGTGCGCCTTCGGGTTGGAGTGC....2417.007000000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TCGTGCGCCTTCGGGTTGGAGTG.....2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
TGCCATGGACAA---GGCGGTGAAG.......................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTTACCACGGATGTCATCGGATC..........................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000
............................................GTAATGTGGAGATTAAGGAT................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GAGGCCAAAGTGGAGGAGG....................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................CACGGATGTCATCGGATCGTGC......................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................GAAGGAGGCCAAAGTGGAGGAGG....................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...CATGGACAA---GGCGGTGAAGGAGG...................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGAGGGTAATGTGGAGATTAAG...................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAAAGTGGAGGAGGGTAATGTGGA..........................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................AGTGGAGGAGGGTAATGTGG...........................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................CGGTGAAGGAGGCCAAAG.............................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................CGCCTTCGGGTTGGAGTGCAA..2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGGAGGCCAAAGTGGAGGAGGG...................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGCCATGGACAA---GGCGGTGAAGGA.....................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.GCCATGGACAA---GGCGGTGAAGGAG....................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAA---GGCGGTGAAGGAGGC..................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...........................................GGTAATGTGGAGATTAAGGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
TGCCATGGACAA---GGCGGTGAAGGAGGC..................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCCAAAGTGGAGGAGGGTAATGTGGA..........................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TACCACGGATGTCATCGGATCGTGC......................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................GAGGGTAATGTGGAGATTAAGGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ATCGTGCGCCTTCGGGTTGGAGT......2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................ACCACGGATGTCATCGGATCGT........................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................GGTAATGTGGAGATTAAGGAT................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......GACAA---GGCGGTGAAGGAGGCCAAA..............................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................GCCAAAGTGGAGGAGGGTAAT...............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GAAGGAGGCCAAAGTGGAGGAG.....................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........A---GGCGGTGAAGGAGGCCAAAGTG...........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................GGCCAAAGTGGAGGAGGGTAAT...............................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................CGGTTTACCACGGATGTCATCGGATCGT........................2811.001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TACCACGGATGTCATCGGAT...........................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................GGAGGGTAATGTGGAGATTAAGGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..............................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGTGGAGATTAAGGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TGTGCCCGG.................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TGTCATCGGATCGTGCGCCTT.................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........A---GGCGGTGAAGGAGGCCAA...............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................GGTAATGTGGAGATC......................................................................................................................................................................................................................................................................................................................................1560.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GATGTCATCGGATCGTAAC.....................19140.142000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
droSim2
CTGCCGGAGGAG---GGCTT-CAAGGAGGTGGACATG-AAGAAAGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGACATCATAGCCTCGACTATCTTTGGCTTGGATGTGAATASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................TT-CAAGGAGGTGGACATG-AAGAAA....................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................AAGGAGGTGGACATG-AAGAAAGTGAT...............................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CGACTATCTTTGGCTTGGATGT.....2211.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................CCTCGACTATCTTTGGCC............1811.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CGACTATCTTTGGCTTGGATG......2111.00100000100000000000
.................CTT-CAAGGAGGTGGACATG-AAG.......................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
droSec2
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATACGCCATCGACATTATTGCCACGACTATTTTTGGACTAGATGTAGATASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................................................................................................................................................................................................................................................CACGACTATTTTTGGACTAGATGT.....2411.0010100
......................................................................................................................................................................................................................................................................................................................................................................GACTATTTTTGGACTAGATGTAGAT.2511.0010001
......................................................................................................................................................................................................................................................................................................................................................................GACTATTTTTGGACTAGATGT.....2111.0010010
...........................................................................................................................................................................................................................................................................................................................................................................TTTTTGGACTAGATGTAGATA2111.0010100
.........................................................................................................................................................................................................................................................................................................................................................................TATTTTTGGACTAGATGTAG...2011.0010010
..........................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGACTAGATGTA....1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................TTTTTGGACTAGATGTAGAT.2011.0010010
droYak3
CTGCCGGAGGAG---GGCTT-CAAGGAGGTGGATGTA-AAGAAAGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGATATCATAGCCTCCACTATCTTTGGCTTGGATGTGAACASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
CTGCCGGAGGAG---GGCTT-CAAGGAGGTGG................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.TGCCGGAGGAG---GGCTT-CAAGGAGGTGGAT..............................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................CTT-CAAGGAGGTGGATGTA-AAGAAA....................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................TATCTTTGGCTTGGATGTGAACA2311.00101000000000
droEre2
CTGCCGGAGGAG---GGCTT-CAAGGAGGTGGATATG-AAGAAAGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGATATAATAGCCTCGACTATCTTTGGCTTGGATGTAAATASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................AGTGATGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTG.......................................2311.0011000000

Generated: 09/08/2015 at 06:09 PM