ID:

dpe_419

 Coordinate:

scaffold_0:6827216-6827366 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.2 -9.2 -9.0

Flybase annnotation

exon [dper_GLEANR_6537:5]; CDS [Dper\GL24228-cds]; intron [Dper\GL24228-in]

No Repeatable elements found

mature
  1. dpe_415  scaffold_0:6703622-6703644 -
  2. dpe_419  scaffold_0:6827217-6827239 +
  3. scaffold_3:3196066-3196088 +
  4. scaffold_12:947654-947676 +
  5. scaffold_37:349040-349062 -
star
  1. scaffold_0:6415752-6415775 +
  2. dpe_419  scaffold_0:6827263-6827286 +
  3. scaffold_0:9807496-9807519 +
  4. scaffold_12:947699-947722 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATAGAGAACATGCCGGATAATTCATTTCAGGGGCAACGCGACCAAGCTGCGGATGAAGATGGAGCGAAAAGACTCTGGACGAGTGTGCCAGGTAACACTACCACAATGCCTTCTACAAGAATAAATGTGCAGTTGGCGTGTATTAACATATAAAGAAATGAATTAAGTGGAAATTGTTTAGGCTTAAACCTTATTTTAGACACAATCAAAATCAGTGGTACATCATCCCCTCGACTGGAGCCCTTCGGC
***************************************************....((.(((.((.............(((...(((((........))))).))).....)).))).))..********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V057
head
 V042
embryo
...................................................CGGATGAAGATGGAGCGAAAAGA................................................................................................................................................................................. 23 0 5 7.00 35 17 17 0 0 1
...................................................CGGATGAAGATGGAGCGAAAAGAC................................................................................................................................................................................ 24 0 5 4.80 24 20 3 1 0 0
...................................................CGGATGAAGATGGAGCGAAAAGACT............................................................................................................................................................................... 25 0 4 3.00 12 9 3 0 0 0
...................................................CGGATGAAGATGGAGCGAAAAG.................................................................................................................................................................................. 22 0 5 1.40 7 2 5 0 0 0
...................................................CGGATGAAGATGGAGCGAAAAGACTC.............................................................................................................................................................................. 26 0 3 1.33 4 4 0 0 0 0
....AGAGAACATGCCGGATAAT.................................................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
...................................................CGGATGAAGATGGAGCGAAAAGAA................................................................................................................................................................................ 24 1 5 0.40 2 1 0 1 0 0
....................................................GGATGAAGATGGAGCGAAAAGA................................................................................................................................................................................. 22 0 5 0.40 2 2 0 0 0 0
.....................................................GATGAAGATGGAGCGAAAAGAC................................................................................................................................................................................ 22 0 5 0.40 2 2 0 0 0 0
.................................................TGCGGATGAAGATGGAGCGAAAAGA................................................................................................................................................................................. 25 0 5 0.40 2 0 2 0 0 0
....................................................GGATGAAGATGGAGCGAAAAG.................................................................................................................................................................................. 21 0 5 0.40 2 2 0 0 0 0
............................TCAGGGGCGACGAGACCAAGCTG........................................................................................................................................................................................................ 23 2 3 0.33 1 1 0 0 0 0
...................................................CGGATGAAGATGGAGCGAAAAGACTCT............................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0
....................................................GGATGAAGATGGAGCGAAAAGACTC.............................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
.....................................................GATGAAGATGGAGCGAAAAGACTCT............................................................................................................................................................................. 25 0 3 0.33 1 0 1 0 0 0
.............................................................TGGAGCGAAAAGACTCTGGACGAGTG.................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
............................................................ATGGAGCGAAAAGACTCTGGAC......................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0
....................................................................AAAAGACTCTGGACGAGTGTGCC................................................................................................................................................................ 23 0 4 0.25 1 1 0 0 0 0
.....................................................GATGAAGATGGAGCGAAAAGACTA.............................................................................................................................................................................. 24 1 4 0.25 1 1 0 0 0 0
....................................................GGATGAAGATGGAGCGAAAAGACT............................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
...................................................CGGATGAAGATGTAGCGAAAAGACT............................................................................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0
...................................................CGGATGAACATGGAGCGAAAAGACT............................................................................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0
.................................................................................................CACTACCACAATGCCTTCTACAAG.................................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0
....................................................GGATGAAGATGGAGCGAAAAGAC................................................................................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0
...................................................CGGATGAAGATGGAGCGAAAA................................................................................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0
.................................................TGCGGATGAAGATGGAGCGAAAAGAC................................................................................................................................................................................ 26 0 5 0.20 1 1 0 0 0 0
...................................................CGGATGAATATGGAGCGAAAAG.................................................................................................................................................................................. 22 1 5 0.20 1 1 0 0 0 0
...................................................CGGATTAAGATGGAGCGAAAAGA................................................................................................................................................................................. 23 1 5 0.20 1 0 1 0 0 0
...................................................CGGATGAAGATTGAGCGAAAAGA................................................................................................................................................................................. 23 1 5 0.20 1 1 0 0 0 0
...................................................CGGATGAAAATGGAGCGAAAA................................................................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0
...................................................GGGATGAAGATGGAGCGAAAAGAC................................................................................................................................................................................ 24 1 5 0.20 1 1 0 0 0 0
......................................................................................................................................................TATAAAGAAAGGAATTAAG.................................................................................. 19 1 7 0.14 1 1 0 0 0 0
......................................................................................................................................................................................................TAGACACATTCGCAATCAGTG................................ 21 3 7 0.14 1 0 0 0 1 0
.....................................................................................................................................................................................................................TCAGTGGTAGAACATCACCT.................. 20 3 15 0.13 2 0 0 2 0 0
......................................................................................................................................................................................................................CAGTGGTATAACATACCCT.................. 19 3 16 0.06 1 0 0 0 1 0
...................................................CGGATGAAGATGGAGCGAAAGG.................................................................................................................................................................................. 22 1 16 0.06 1 0 1 0 0 0
.................................................TGCGGATGAAGATGGAGCGAAA.................................................................................................................................................................................... 22 0 16 0.06 1 1 0 0 0 0
............................................CAAGCTGCGGATGAAGATGGAG......................................................................................................................................................................................... 22 0 17 0.06 1 0 1 0 0 0
............................................CAAGCTGCGGATGAAGATGGA.......................................................................................................................................................................................... 21 0 17 0.06 1 0 1 0 0 0
...................................................CGGATGAAGATGGAGCGAA..................................................................................................................................................................................... 19 0 17 0.06 1 1 0 0 0 0
............................................CAACCTGCGGATGAAGATGGAG......................................................................................................................................................................................... 22 1 17 0.06 1 0 1 0 0 0
.............................................AAGCTGCGGATGAAGATGGAGC........................................................................................................................................................................................ 22 0 18 0.06 1 0 1 0 0 0
............................................CAAGCTGCGGATGAAGATT............................................................................................................................................................................................ 19 1 18 0.06 1 0 1 0 0 0
..........................................ACCAAGCTGCGGATGAAGATGG........................................................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0 0
...............................................GCTGCGGATGAAGATGGAGC........................................................................................................................................................................................ 20 0 18 0.06 1 1 0 0 0 0
.....................................................................................................................................................................................................................TCAGTGGTAGAACATCACC................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

GTTATCTCTTGTACGGCCTATTAAGTAAAGTCCCCGTTGCGCTGGTTCGACGCCTACTTCTACCTCGCTTTTCTGAGACCTGCTCACACGGTCCATTGTGATGGTGTTACGGAAGATGTTCTTATTTACACGTCAACCGCACATAATTGTATATTTCTTTACTTAATTCACCTTTAACAAATCCGAATTTGGAATAAAATCTGTGTTAGTTTTAGTCACCATGTAGTAGGGGAGCTGACCTCGGGAAGCCG
**********************************************************************************************************************************....((.(((.((.............(((...(((((........))))).))).....)).))).))..*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 M021
embryo
 V057
head
 V050
head
.....................................TGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 0 17 49.47 841 827 2 9 3 0 0
......................................GCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 23 0 18 5.94 107 103 0 0 3 0 1
...................................GTTGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 26 0 16 5.63 90 90 0 0 0 0 0
.......................................CGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 22 0 18 4.11 74 60 1 4 9 0 0
....................................TTGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 25 0 17 3.24 55 55 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 23 0 17 3.18 54 54 0 0 0 0 0
........................................GCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 21 0 18 2.83 51 42 3 6 0 0 0
.....................................TGCGCTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 24 1 17 2.18 37 37 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 26 0 17 1.24 21 20 1 0 0 0 0
.....................................TGCGCTGGTTCGACGACTACTTCT.............................................................................................................................................................................................. 24 1 18 0.89 16 16 0 0 0 0 0
.......................................CGCTGGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 24 0 18 0.50 9 4 0 0 5 0 0
........................................GCTGGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 23 0 18 0.44 8 6 1 1 0 0 0
......................................GCGCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 22 0 18 0.44 8 8 0 0 0 0 0
...................................GTTGCGCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 25 0 16 0.44 7 7 0 0 0 0 0
.........................................CTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 20 0 18 0.39 7 5 0 0 2 0 0
...................................GTTGCGCTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 26 1 16 0.38 6 6 0 0 0 0 0
..............................................................................................................................................................................................................................GTAGTAGGGGAGCTGACCTCG........ 21 0 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................GTAGTAGGGGAGCTGACCTCGGGAA.... 25 0 3 0.33 1 0 1 0 0 0 0
.....................................TGCGCTGGTTCGACGTCTACTTCT.............................................................................................................................................................................................. 24 1 17 0.29 5 5 0 0 0 0 0
......................................GCGCTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 23 1 18 0.28 5 5 0 0 0 0 0
.......................................CGCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 21 0 18 0.28 5 5 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCTA............................................................................................................................................................................................. 25 0 17 0.24 4 3 1 0 0 0 0
....................................TTGCGCTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 25 1 17 0.24 4 4 0 0 0 0 0
.......................................TGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 22 1 18 0.22 4 4 0 0 0 0 0
.....................................AGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 18 0.22 4 4 0 0 0 0 0
....................................................................................................................................................................................................................................GGGGAGCTGACCTCGGGAAGC.. 21 0 5 0.20 1 0 1 0 0 0 0
...................................GTTGCGCTGGTTCGACGACTACTTCT.............................................................................................................................................................................................. 26 1 17 0.18 3 3 0 0 0 0 0
.....................................TGGGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 17 0.18 3 3 0 0 0 0 0
........................................GCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 20 0 18 0.17 3 3 0 0 0 0 0
.........................................................................................GGTCCATGGTGCTGGTGTAAC............................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 1 0
......................................GCGCTGGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 25 0 18 0.17 3 3 0 0 0 0 0
..........................................TGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 19 0 18 0.17 3 3 0 0 0 0 0
......................................GCGCTGGTTCGACGACTACTTCT.............................................................................................................................................................................................. 23 1 19 0.16 3 3 0 0 0 0 0
..................................CGTTGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 27 0 15 0.13 2 2 0 0 0 0 0
.....................................TGTGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 17 0.12 2 2 0 0 0 0 0
....................................TTGCGCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 24 0 17 0.12 2 2 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTATTTCT.............................................................................................................................................................................................. 24 1 17 0.12 2 2 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTT................................................................................................................................................................................................ 22 0 17 0.12 2 2 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTCCT.............................................................................................................................................................................................. 24 1 17 0.12 2 2 0 0 0 0 0
...................................................................................................GATGGTGTTACGGAAGATGT.................................................................................................................................... 20 0 13 0.08 1 0 1 0 0 0 0
..................................CGTTGCGCTGGTTCGACGCCTA................................................................................................................................................................................................... 22 0 15 0.07 1 1 0 0 0 0 0
..................................CGTTGCGCTGGTTCGACGCCTACT................................................................................................................................................................................................. 24 0 15 0.07 1 1 0 0 0 0 0
..................................CGTTGCGCTGGTTCGACGCCTACTT................................................................................................................................................................................................ 25 0 15 0.07 1 1 0 0 0 0 0
...................................GTTGTGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 26 1 16 0.06 1 1 0 0 0 0 0
...............................................CGACGCCTACTTCTACCTCGCTTT.................................................................................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0 0
...................................GTTGCGCTGGTTCGACGTCTACTTCT.............................................................................................................................................................................................. 26 1 16 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCTACCT.......................................................................................................................................................................................... 28 0 16 0.06 1 1 0 0 0 0 0
...................................GTTGCGCTGGTTCGACGCCTAC.................................................................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCTACATG......................................................................................................................................................................................... 29 2 16 0.06 1 1 0 0 0 0 0
.......................................CGCTGGTTCGACGCCTACTTCTACCT.......................................................................................................................................................................................... 26 0 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTAGTTCT.............................................................................................................................................................................................. 24 1 17 0.06 1 1 0 0 0 0 0
....................................TTGCGCTGGTTCGACGCCTACTTCG.............................................................................................................................................................................................. 25 1 17 0.06 1 1 0 0 0 0 0
....................................TAGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 25 1 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACTCCTACTTC............................................................................................................................................................................................... 23 1 17 0.06 1 1 0 0 0 0 0
.....................................TTCGCTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 23 1 17 0.06 1 1 0 0 0 0 0
....................................TTGCGCGGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 25 1 17 0.06 1 1 0 0 0 0 0
....................................ATGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 25 1 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTTGACGCCTACTTC............................................................................................................................................................................................... 23 1 17 0.06 1 1 0 0 0 0 0
....................................GTGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 25 1 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCA.............................................................................................................................................................................................. 24 1 17 0.06 1 1 0 0 0 0 0
....................................TTGCGCTGGTTCGACGTCTACTTCT.............................................................................................................................................................................................. 25 1 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCCACGGCTACTTCT.............................................................................................................................................................................................. 24 2 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCTTTC........................................................................................................................................................................................... 27 2 17 0.06 1 1 0 0 0 0 0
.....................................TGCGTTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 17 0.06 1 1 0 0 0 0 0
....................................TTGCGCTGGTTCGGCGCCTACT................................................................................................................................................................................................. 22 1 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTAGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 17 0.06 1 1 0 0 0 0 0
....................................TTGCGCTGGTTCGACGCCT.................................................................................................................................................................................................... 19 0 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCCTACTTCG.............................................................................................................................................................................................. 24 1 17 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCAACGCCTACTTCT.............................................................................................................................................................................................. 24 1 17 0.06 1 1 0 0 0 0 0
.........................................CTGGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 22 0 18 0.06 1 1 0 0 0 0 0
.......................................CGCTGGTTCGACGCCGACTTCTAC............................................................................................................................................................................................ 24 1 18 0.06 1 1 0 0 0 0 0
........................................GCTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 21 1 18 0.06 1 1 0 0 0 0 0
.........................................CTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 20 1 18 0.06 1 1 0 0 0 0 0
........................................GCTGGTTCGACGCCTGCTTCT.............................................................................................................................................................................................. 21 1 18 0.06 1 0 0 1 0 0 0
.....................................CGCGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 18 0.06 1 1 0 0 0 0 0
..........................................TGGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 21 0 18 0.06 1 1 0 0 0 0 0
.........................................TTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 20 1 18 0.06 1 1 0 0 0 0 0
.........................................CTGGTTCGACGCCTACTTCA.............................................................................................................................................................................................. 20 1 18 0.06 1 1 0 0 0 0 0
......................................GCGCTGGTTCGACGCCTACT................................................................................................................................................................................................. 20 0 18 0.06 1 1 0 0 0 0 0
.....................................TGCGCTGGTTCGACGCTTACTTCTA............................................................................................................................................................................................. 25 1 18 0.06 1 1 0 0 0 0 0
.......................................AGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 22 1 18 0.06 1 1 0 0 0 0 0
.....................................TGCGCTTGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 18 0.06 1 1 0 0 0 0 0
.......................................GGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 22 1 18 0.06 1 1 0 0 0 0 0
........................................ACTGGTTCGACGCCTACTTC............................................................................................................................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0
.......................................AACTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 22 2 18 0.06 1 1 0 0 0 0 0
.......................................CGCTGGTTCGACGCCTACTTCG.............................................................................................................................................................................................. 22 1 18 0.06 1 1 0 0 0 0 0
...........................................GGTTCGACGCCTACTTCTAC............................................................................................................................................................................................ 20 0 18 0.06 1 1 0 0 0 0 0
......................................GGGCTGGTTCGACGGCTACTTCT.............................................................................................................................................................................................. 23 2 18 0.06 1 1 0 0 0 0 0
.........................................CTGGTTCGACGTCTACTTCT.............................................................................................................................................................................................. 20 1 18 0.06 1 1 0 0 0 0 0
......................................GCGCTAGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 23 1 18 0.06 1 0 0 1 0 0 0
.......................................CGCTGGTTCGACTCCTACTTCT.............................................................................................................................................................................................. 22 1 18 0.06 1 1 0 0 0 0 0
......................................GAGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 23 1 18 0.06 1 1 0 0 0 0 0
.....................................TACGCTGGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 24 1 18 0.06 1 1 0 0 0 0 0
.......................................CGCTGGTTCGACGCTTACTTCTA............................................................................................................................................................................................. 23 1 19 0.05 1 1 0 0 0 0 0
.............................................TTCGACGCCTACTTCTAC............................................................................................................................................................................................ 18 0 19 0.05 1 1 0 0 0 0 0
..........................................ATGTTCGACGCCTACTTCT.............................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:6827166-6827416 + dpe_419 CAATAGAGAACATGCCGGATAATTCATTTCAGGGGCAACGCGACCAAGCTGCGGATGAAGATGGAGCGAAAAGACTCTGGACGAGTGTGCCAGGT-AACACTACCACAATGCCTTCTACAAGAATAAATGTGCAGTTGGCGTGTATTAACATATAAAGAAATGAATTAAGTGGAAATTGTTTAGGCTTAAACCTTATTTTAGACACAATCAAAATCAGTGGTACATCATCCCCTCGACTGGAGCCCTTCGGC
dp5 2:13620557-13620808 - dps_523 CAATAGAGAACCTGCGGGATAGTGCATTTGAGGTTCAACGCGACCAAGCTGCGGATGAAGATGGAGCGAAAAGACTCTGGATGAGTGTGCCAGGTTACCACTACCACAATGCCTTCTACAAGGACAAATGTTTAGTTGGCGTGTATTAACATATAAAGAAATGAATTGAGTGGAAATTGTTTTGTATTAAACCTTATTTTAAACACAATCAAAATCAGTAGTACATCATCCCCTCGACTGGAGCCCTTCGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CAATAGAGAACATGCCGGATAATTCATTTCAGGGGCAACGCGACCAAGCTGCGGATGAAGATGGAGCGAAAAGACTCTGGACGAGTGTGCCAGGT-AACACTACCACAATGCCTTCTACAAGAATAAATGTGCAGTTGGCGTGTATTAACATATAAAGAAATGAATTAAGTGGAAATTGTTTAGGCTTAAACCTTATTTTAGACACAATCAAAATCAGTGGTACATCATCCCCTCGACTGGAGCCCTTCGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................CGGATGAAGATGGAGCGAAAAGA..................................................................................................................................................................................2357.003501710017
...................................................CGGATGAAGATGGAGCGAAAAGAC.................................................................................................................................................................................2454.80241200003
...................................................CGGATGAAGATGGAGCGAAAAGACT................................................................................................................................................................................2543.0012090003
...................................................CGGATGAAGATGGAGCGAAAAG...................................................................................................................................................................................2251.407020005
...................................................CGGATGAAGATGGAGCGAAAAGACTC...............................................................................................................................................................................2631.334040000
....AGAGAACATGCCGGATAAT.....................................................................................................................................................................................................................................1920.501010000
...................................................CGGATGAAGATGGAGCGAAAAGAA.................................................................................................................................................................................2450.402110000
....................................................GGATGAAGATGGAGCGAAAAGA..................................................................................................................................................................................2250.402020000
.....................................................GATGAAGATGGAGCGAAAAGAC.................................................................................................................................................................................2250.402020000
.................................................TGCGGATGAAGATGGAGCGAAAAGA..................................................................................................................................................................................2550.402000002
....................................................GGATGAAGATGGAGCGAAAAG...................................................................................................................................................................................2150.402020000
...................................................CGGATGAAGATGGAGCGAAAAGACTCT..............................................................................................................................................................................2730.331010000
....................................................GGATGAAGATGGAGCGAAAAGACTC...............................................................................................................................................................................2530.331010000
.....................................................GATGAAGATGGAGCGAAAAGACTCT..............................................................................................................................................................................2530.331000001
.............................................................TGGAGCGAAAAGACTCTGGACGAGTG.....................................................................................................................................................................2630.331010000
............................................................ATGGAGCGAAAAGACTCTGGAC..........................................................................................................................................................................2230.331010000
....................................................................AAAAGACTCTGGACGAGTGTGCC.................................................................................................................................................................2340.251010000
.....................................................GATGAAGATGGAGCGAAAAGACTA...............................................................................................................................................................................2440.251010000
....................................................GGATGAAGATGGAGCGAAAAGACT................................................................................................................................................................................2440.251010000
..................................................................................................CACTACCACAATGCCTTCTACAAG..................................................................................................................................2440.251010000
....................................................GGATGAAGATGGAGCGAAAAGAC.................................................................................................................................................................................2350.201010000
...................................................CGGATGAAGATGGAGCGAAAA....................................................................................................................................................................................2150.201010000
.................................................TGCGGATGAAGATGGAGCGAAAAGAC.................................................................................................................................................................................2650.201010000
.................................................TGCGGATGAAGATGGAGCGAAA.....................................................................................................................................................................................22160.061010000
............................................CAAGCTGCGGATGAAGATGGAG..........................................................................................................................................................................................22170.061000001
............................................CAAGCTGCGGATGAAGATGGA...........................................................................................................................................................................................21170.061000001
...................................................CGGATGAAGATGGAGCGAA......................................................................................................................................................................................19170.061010000
.............................................AAGCTGCGGATGAAGATGGAGC.........................................................................................................................................................................................22180.061000001
............................................CAAGCTGCGGATGAAGATT.............................................................................................................................................................................................19180.061000001
..........................................ACCAAGCTGCGGATGAAGATGG............................................................................................................................................................................................22180.061010000
...............................................GCTGCGGATGAAGATGGAGC.........................................................................................................................................................................................20180.061010000
dp5
CAATAGAGAACCTGCGGGATAGTGCATTTGAGGTTCAACGCGACCAAGCTGCGGATGAAGATGGAGCGAAAAGACTCTGGATGAGTGTGCCAGGTTACCACTACCACAATGCCTTCTACAAGGACAAATGTTTAGTTGGCGTGTATTAACATATAAAGAAATGAATTGAGTGGAAATTGTTTTGTATTAAACCTTATTTTAAACACAATCAAAATCAGTAGTACATCATCCCCTCGACTGGAGCCCTTCGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................AAGCTGCGGATGAAGATGGAGC.........................................................................................................................................................................................2291.331201200000000
.................................................................................................................TTCTACAAGGACAAATGTTTAGTTGGC................................................................................................................2711.0010100000000
.................................................TGCGGATGAAGATGGAGCGAAAAGAC.................................................................................................................................................................................2650.8040000000040
.............................................AAGCTGCGGATGAAGATGGAGCG........................................................................................................................................................................................2380.6350200000300
............................................CAAGCTGCGGATGAAGATGGAGC.........................................................................................................................................................................................2390.5650500000000
........................................................................................................................................................................................................................................CTCGACTGGAGCCCTTCG..1820.5010100000000
.......................................................................................................................................................................................................................................CCTCGACTGGAGCCCTTCGGC2120.5010000001000
.............................................AAGCTGCGGATGAAGATGGAG..........................................................................................................................................................................................2190.4440400000000
................................................CTGCGGATGAAGATGGAGCGAAAA....................................................................................................................................................................................2450.4020000000200
..........................................ACCAAGCTGCGGATGAAGATGG............................................................................................................................................................................................2280.3830300000000
..........................................ACCAAGCTGCGGATGAAGATGGA...........................................................................................................................................................................................2380.3830100002000
..........................................................AGATGGAGCGAAAAGACTCTGG............................................................................................................................................................................2230.3310100000000
..........................................ACCAAGCTGCGGATGAAGATGGAG..........................................................................................................................................................................................2480.2520100001000
.............................................AAGCTGCGGATGAAGATGG............................................................................................................................................................................................1990.2220200000000
.............................................AAGCTGCGGATGAAGATGGA...........................................................................................................................................................................................2090.2220200000000
.................................................TGCGGATGAAGATGGAGCGAAAAGA..................................................................................................................................................................................2550.2010100000000
..................................................GCGGATGAAGATGGAGCGAAAAG...................................................................................................................................................................................2350.2010100000000
...............................................................................................TACCACTACCACAATGCCTTCTACAAGGA................................................................................................................................2950.2010100000000
...............................................................................................TACCACTACCACAATGCCTTCTACAA...................................................................................................................................2650.2010100000000
.................................................TGCGGATGAAGATGGAGCGA.......................................................................................................................................................................................20100.2020000000020
...............................................................................................TACCACTACCACAATGCCTTCTACA....................................................................................................................................2550.2010100000000
.................................................TGCGGATGAAGATGGAGCGAAAAG...................................................................................................................................................................................2450.2010000000010
................................................CTGCGGATGAAGATGGAG..........................................................................................................................................................................................18110.1820200000000
..............................................AGCTGCGGATGAAGATGGAA..........................................................................................................................................................................................20110.1820000000002
.............................................AAGCTGCGGATGAAGATGGAGCGA.......................................................................................................................................................................................2480.1310100000000
................................................CTGCGGATGAAGATGGAGCGAAA.....................................................................................................................................................................................2380.1310000001000
................................................CTGCGGATGAAGATGGAGCGAA......................................................................................................................................................................................2280.1310100000000
.............................................AAGCTGCGGATGAAGATGGAGCGAA......................................................................................................................................................................................2580.1310100000000
..........................................ACCAAGCTGCGGATGAAGATGGAGC.........................................................................................................................................................................................2580.1310100000000
............................................CAAGCTGCGGATGAAGATGG............................................................................................................................................................................................2090.1110100000000
......................................................................................................ACCACAATGCCTTCTACAAGGAC...............................................................................................................................2390.1110100000000
.............................................AAGCTGCGGATGAAGATGGC...........................................................................................................................................................................................20100.1010100000000

Generated: 06/08/2015 at 02:42 PM