dpe_406

CDS [Dper\GL23356-cds]; exon [dper_GLEANR_5695:2]; CDS [Dper\GL23356-cds]; exon [dper_GLEANR_5695:1]; intron [Dper\GL23356-in]

##################################################------------------------------------------------------------------------------------------################################################## CACTGGACAGCCGACCAGCAGCGCAACTACAACAGCCACAACCACCACGAGTCCGGCTCAGAGTTCCATGTCGGGAATGGGGACAACAGGAGGAGCTGGAACGGGAACTGTCACTAGCGCTGGCTCAGGGACTGTCACAGTCACGACATCGACATCGAGCATGCCGAGCAGTGCGGGAAGCAGTGCTGGG ******************************************************************************.........(((..(((((.((((...))))..))))).....)))..************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V111 male body	V042 embryo	M042 female body	V057 head	V050 head
.....................................................................................................................................GTCACAGTCACGACATCGAC.....................................	20	0	1	4.00	4	4	0	0	0	0	0
................................................................................GGACAACAGGAGGAGCTG............................................................................................	18	0	1	2.00	2	2	0	0	0	0	0
...............................................................................GGGACAACAGGAGGAGCTG............................................................................................	19	0	1	2.00	2	2	0	0	0	0	0
..........................................................CAGAGTTCCATGTCGGGAAT................................................................................................................	20	0	1	2.00	2	0	2	0	0	0	0
....GGACAGCCGACCAGCAGCGC......................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0
.......................................................................................AGGAGGAGCTGGAACGGGA....................................................................................	19	0	1	1.00	1	0	0	0	1	0	0
................................................................................GGACAACAGGAGGAGCTGGAACGGGAA...................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
......................................................GGCTCAGAGTTCCATGTCGGGAATG...............................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
..........................................................................................................ACTGTCACTAGCGCTGGCTCAG..............................................................	22	0	1	1.00	1	0	0	0	1	0	0
......................................CAACCACCACGAGTCCGGC.....................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0
....................................................................................................ACGGGTACGGTCACTAGCGC......................................................................	20	2	1	1.00	1	0	0	0	0	1	0
...........CGCCCAGCAGCGCCGCTACAACAGC..........................................................................................................................................................	25	3	2	0.50	1	0	0	1	0	0	0
............................................................GAGTTCGATGTCGGGACT................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
......................................................................................................GGGCACTGTCACTAGCGCGA....................................................................	20	3	4	0.25	1	0	0	0	0	0	1

GTGACCTGTCGGCTGGTCGTCGCGTTGATGTTGTCGGTGTTGGTGGTGCTCAGGCCGAGTCTCAAGGTACAGCCCTTACCCCTGTTGTCCTCCTCGACCTTGCCCTTGACAGTGATCGCGACCGAGTCCCTGACAGTGTCAGTGCTGTAGCTGTAGCTCGTACGGCTCGTCACGCCCTTCGTCACGACCC ************************************************************.........(((..(((((.((((...))))..))))).....)))..******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V111 male body	V057 head	M042 female body	V042 embryo
.......................................TTGGTGGTGCTCAGGCCGAGT..................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.......GTCGGCTAGGCGTCGCGCTG...................................................................................................................................................................	20	3	14	0.14	2	0	2	0	0	0
............................................................................TCCCACTGTTGTGCTCCTC...............................................................................................	19	3	18	0.06	1	0	0	1	0	0
.....................................................................................................................................CAGTGTGAGTTGTGTAGCT......................................	19	3	20	0.05	1	0	0	0	1	0
.............................................................................................................CGGTGATCGCGCCCGAGTCCA............................................................	21	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_0:6391915-6392104 -	dpe_406	CACTGGACAGCCG---------------------ACCAG------CAGCGCAACTACAACAGCCACAACCAC---CACGAGTCCGGCTCAGAGTT------------------------------------------------CCATGTCGGGAATG-----------------GGGAC-----AACAGGAGGAGCTGGAACGGGAACTGTCACTAGCGCTGGCTCAGGGACTGTCACAGT------------------------------C------ACGACATCGACATCGAGCATGCCGAGCA---------------------------------------------------------------------------------------------------------GTGCGGGAAGCAGTGCTGGG
dp5	2:14049751-14049940 +		CACTGGACAGCCG---------------------ACCAG------CAGCGCAACTACAACAGCCACAACCAC---CACGAGTCCGGCTCAGAGCT------------------------------------------------CCATGTCGGGAATG-----------------GGGAC-----AACAGGAGGAGCTGGAACGGGAACTGTCACTAGCGCTGGCTCAGGGACTGTCACAGT------------------------------C------ACGACATCGACATCGAGCATGCCGAGCA---------------------------------------------------------------------------------------------------------GTGCGGGAAGCAGTGCTGGG
droWil2	scf2_1100000004943:9154498-9154615 -		CACGGGACAACCACTGACCACCACAAATAA------TAGCAGCAGCA------ACAGCACAAACACAACCAC---GGCCAGTCCAGCTCATGGAA------------------------------------------------CGGGTAACGGAACT-----------------AGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAGGAGGCAACGGCAGT
droVir3	scaffold_13047:11137529-11137704 +		CACAGGAA---CTGGCCAAGCCACGACCAACAACAGCAG------CAGCAGCACCACCACAACCACCACCACCACTAC------CACGAACACCACAACCACCACCACCACCACCGCTGGCATAACGAGCACAGCTCAAGACGCTGGC------ACG-----------------G-----------------------GC------------------------ACA------------------------------AC------------A------GCAGTCACAACATCGAGCATGTCCAGCA---------------------------------------------------------------------------------------------------------GCG-----------------
droMoj3	scaffold_6540:30621506-30621746 -		CACAGGAA---CTGGCCAAGCCACGACCAACAACAGCAG------CAGCAGCACCACTTCAATAACCAACACCAACACAACT------ACCACCACCAACAGCACCACCGCCACCACGGGCGTAACGAGCACAGCTCAAGACGCTGGCTCTGTTACG-----------------GGCACAGGCA-----------CTGGA------------------------ACG------------------------------GGAACGGGAACGGGCACAACATCGGTCACAACATCGAACATGTCCAGCA---------------------------------------------------------------------------------------CCGGTGGCGATG------CCAACAATAGCAATACGAGT
droGri2	scaffold_14624:1030019-1030160 +		CACAGGCA---CAGGCCAAGCCACAACCAACA---ACAGCAG---CAATA---ACAGT-----AATAA-------------TC------CAGCTG---------------CAACAACGGGCATAACGAGCACAGCTCA---------A------ACG-----------------GGAACAGGAA-----------CAGTC------------------ACGGGATCAGTCACTGTGCCAGC------------------------------A------ACAGCAGTCAC------------A---------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13117:3530258-3530442 -		AACTAC--AGC-----------------AGCAGCAGCAG------CAGCA--------GCAGCAACAGCCAC---CGCCACCCACGTCCCAGATG------------------------------------------------CAGCAGTTGCATC-----------ATCACCTCCAGCAGCAG-----------CAGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAGCAGC-AGTCCTC-------------------------------------GCGATCG--GCTGCGAGTCC-CTTGTCGCCGCCCCGCCCTGGAGCACC---------------------------GCCCGGAGGCGGTAGCGGT
droBip1	scf7180000395895:26901-27103 +		AACTAC--AGC-----------------AGCAGCAGCAG------CAGCAAC-----AACAGCAACAGCCAC---CGCCACCCACGTCCCAGATG------------------------------------------------CAGCAGTTGCATC-----------ATCACCTCCACCAGCAA-----------CAGCA------------------------GCA------------------------------GC------------A------GCAGTCCTC--------------------------------------------------GCGATCG--GCTGCGAGTCC-CTTGTCGCCGCCACGTCCGGGAGCACCGCCCGGTGGCGGCATCGGTGGCAGCAGTGGGGGCGGCAGTGGCAAC
droKik1	scf7180000301641:87492-87630 +		CACCGGACAGCCGGGCAC---------CACCACCAGCAG------CAGCAC------TACAGCAACCACCAC---AACGAGTCCGGCACAGAGCA------------------------------------------------CGGGAACTGTCACG-----------------GGCACGGGAA-----------CAGGC------------------------GCAGGAACG------------------------GG------------C------ACAGTCACAACATCGAGCCAGCCAGGC------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454072:2515094-2515260 +		TG--------------AGCAGCGTGACCAACACGAGCAT------AGCGGGCACCGGCGGAACTGGCACAGG---------------------------------------------------------------------------------AACT-----------------GGGAC-----AGGAACAGGAACTGGAACCGGAACTGGTACTGGTACAGGCACTGGAACTGGCACAGGCACAGGAACTGGAACTGG------------A------ACTGGTACTG---------------------------------------------------------------------------------------------------------------------------GGACTGGAACTGGTACTGGG
droEle1	scf7180000491194:1657189-1657286 +		C--------------------------------------------------------CACAGCCACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CGGGA------ACG-----------------GGCACGGGAT-----------CAGTC------------------------ACC------GGGACAGT------------------------------C------ACCACCTCCAGCTCTAGCCTGCCAGGA------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777200:252522-252722 +		AACAAC--GGC--------------------------AA------CGGC---ACCAAC--AACGGCAACAGC---AACAACAACGGCTCTGAGAA------------------------------------------------TCTAACCAAATTCTCTGTGGAAAT-------AGTG---------------------------------------------------------------------------------------------------------CAACAGCTGGAGTTTACCACATCCGCGGCCAATTCGCAACCGCAACAGATTAGCACGAATGTCACTGTGAAGGCGC---TCACCAATACGTCCGTGAAGAGTG-------------------------AACCAGGAGTGGGCGGTGGC
droBia1	scf7180000302035:270195-270354 +		CACCGGACAGCCGGGCACCACAGCCACCAGC---AGTGG------CGGC------AGCACAGCAACCACCAC---AACGAGTCCAGCGCAGAGTG------------------------------------------------CGGGAACGGGATCG-----------GGAACGGGCACAGGA-----------------------------------------TCAGGAACGGGCTCG------------------GG------------A------ACAGTAAACACCTCGAGTTTGCCAGGAG---------------------------------------------------------------------------------------------------------GAG------------GAGGA
droTak1	scf7180000415712:696698-696815 +		CACGG------------------C---CACCAGCAGTAG------CAGCAC------CACCACCACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CGGGATCGGGAA----------------------------------------------------------------------CG------------------------------GC------------G------ACAGTGACCACCTCGAGTTTGCCAGGCG---------------------------------------------------------------------------------------------------------------GAGGAGGAGGAGGC
droEug1	scf7180000409488:299053-299185 -		CACCGGGCAGCCGGGCACTGCAGCCACCACCTCGAGCAG------CGGCAC------CACAGTAACTACCAC---AACGAGTCCAGCGCAGAGTG------------------------------------------------CGGGA------ACG-----------------GGCACAGGAT-----------CTGGA------------------------TCA------------------------------GT------------A------ACAGTAACCACTTCGAGTTTGCCA---------------------------------------------------------------------------------------------------------------------------------
dm3	chr3R:27604214-27604358 +		CACCGGACAGCCGGGAAGCACAGCGCCCAGCTCAAGCAG------CAGCACCACCAGCACAACAACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------ACA------------------------------GG------------A------ACAGTCGCCAACTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------
droSim2	3r:26879640-26879787 +		CACCGGACAGCCGGGAAGCACAGCGCCCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACAAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------ACG------------------------------GG------------A------ACAGTCGCCAACTCGAGTCTGCCAGGA------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_31:258720-258867 +		CACCGGACAGCCGGGAAGCACAGCGCCCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACAAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------ACG------------------------------GG------------A------ACAGTCGCCAACTCGAGTCTGCCAGGA------------------------------------------------------------------------------------------------------------------------------
droYak3	3R:28538672-28538804 +		CACCGGACAGCCGGGAAGCACAGCGACCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------GG------------A------ACAGTCTCCACCTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4820:366374-366518 -		AGCCGGACAGCCGGGAAGCACAGCGACCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACGAGTCCGGCGCAGAGTT------------------------------------------------CCGGATCAGGATCG-----------------GTCATAGGAT-----------CAGGA------------------------ACA------------------------------GG------------A------ACAGTCGCCACCTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CACTGGACAGCCG---------------------ACCAG------CAGCGCAACTACAACAGCCACAACCAC---CACGAGTCCGGCTCAGAGTT------------------------------------------------CCATGTCGGGAATG-----------------GGGAC-----AACAGGAGGAGCTGGAACGGGAACTGTCACTAGCGCTGGCTCAGGGACTGTCACAGT------------------------------C------ACGACATCGACATCGAGCATGCCGAGCA---------------------------------------------------------------------------------------------------------GTGCGGGAAGCAGTGCTGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................GTCACAGT------------------------------C------ACGACATCGAC..............................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................GGAC-----AACAGGAGGAGCTG.........................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................GGGAC-----AACAGGAGGAGCTG.........................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
........................................................................................CAGAGTT------------------------------------------------CCATGTCGGGAAT...................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
....GGACAGCCG---------------------ACCAG------CAGCGC............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................AGGAGGAGCTGGAACGGGA.................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................GGAC-----AACAGGAGGAGCTGGAACGGGAA................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................................................................................GGCTCAGAGTT------------------------------------------------CCATGTCGGGAATG-----------------.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................ACTGTCACTAGCGCTGGCTCAG...........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................CAACCAC---CACGAGTCCGGC........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0

dp5

CACTGGACAGCCG---------------------ACCAG------CAGCGCAACTACAACAGCCACAACCAC---CACGAGTCCGGCTCAGAGCT------------------------------------------------CCATGTCGGGAATG-----------------GGGAC-----AACAGGAGGAGCTGGAACGGGAACTGTCACTAGCGCTGGCTCAGGGACTGTCACAGT------------------------------C------ACGACATCGACATCGAGCATGCCGAGCA---------------------------------------------------------------------------------------------------------GTGCGGGAAGCAGTGCTGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................C-----AACAGGAGGAGCTGGAACGGGA.................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................CCATGTCGGGAATG-----------------GGGAC-----A......................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................CGGCTCAGAGCT------------------------------------------------CCATGTCGGGA.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................ACAGCCACAACCAC---CACGAG..............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...TGGACAGCCG---------------------ACCAG------CAGCGCAACT........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CATCGAGCATGCCGAGCA---------------------------------------------------------------------------------------------------------GTGCGG..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CTGTCACAGT------------------------------C------ACGACATCGAC..............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................CACGAGTCCGGCTCAGAGCT------------------------------------------------................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

CACGGGACAACCACTGACCACCACAAATAA------TAGCAGCAGCA------ACAGCACAAACACAACCAC---GGCCAGTCCAGCTCATGGAA------------------------------------------------CGGGTAACGGAACT-----------------AGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAGGAGGCAACGGCAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................GTAACGGAACT-----------------AGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAGGAGG..........	25	1	2.00	2	0	0	0	2	0
..................................................................................CCAGCTCATGGAA------------------------------------------------CGGGT...........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0

droVir3

CACAGGAA---CTGGCCAAGCCACGACCAACAACAGCAG------CAGCAGCACCACCACAACCACCACCACCACTAC------CACGAACACCACAACCACCACCACCACCACCGCTGGCATAACGAGCACAGCTCAAGACGCTGGC------ACG-----------------G-----------------------GC------------------------ACA------------------------------AC------------A------GCAGTCACAACATCGAGCATGTCCAGCA---------------------------------------------------------------------------------------------------------GCG-----------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................CAAGACGCTGGC------ACG-----------------G-----------------------GC------------------------ACA------------------------------AC------------A------.........................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGCCAAGCCACGACCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CCACGACCAACAACAGCAG------C.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CCACCACCACCGCTGGCATAACGAGC.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CCGCTGGCATAACGAGCACAG.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AGCACAGCTCAAGACGCT..............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AACAACAGCAG------CAGCAGCAC.........................................................................................................................................................................................................................................................................................................................................................................................	20	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AACAACAGCAG------CAGCAGCACCA.......................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CAACAGCAG------CAGCAGCACCA.......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAG------CAGCAGCACCACCAC...................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CACAGGAA---CTGGCCAAGCCACGACCAACAACAGCAG------CAGCAGCACCACTTCAATAACCAACACCAACACAACT------ACCACCACCAACAGCACCACCGCCACCACGGGCGTAACGAGCACAGCTCAAGACGCTGGCTCTGTTACG-----------------GGCACAGGCA-----------CTGGA------------------------ACG------------------------------GGAACGGGAACGGGCACAACATCGGTCACAACATCGAACATGTCCAGCA---------------------------------------------------------------------------------------CCGGTGGCGATG------CCAACAATAGCAATACGAGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................CTGTTACG-----------------GGCACAGGCA-----------C...........................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................CCAGCA---------------------------------------------------------------------------------------CCGGTGGCGATG------C...................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GTCCAGCA---------------------------------------------------------------------------------------CCGGTGGCGATG------CC..................	22	1	1.00	1	0	0	0	0	0	1
..................................AGCAG------CAGCAGCACCACTTC...................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GGA------------------------ACG------------------------------GGAACGGGAACGGG................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droGri2

CACAGGCA---CAGGCCAAGCCACAACCAACA---ACAGCAG---CAATA---ACAGT-----AATAA-------------TC------CAGCTG---------------CAACAACGGGCATAACGAGCACAGCTCA---------A------ACG-----------------GGAACAGGAA-----------CAGTC------------------ACGGGATCAGTCACTGTGCCAGC------------------------------A------ACAGCAGTCAC------------A---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................CAGCTG---------------CAACAACGGGCAT....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
.........................................................................................CAGCTG---------------CAACAACGGGCATA...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

droAna3

AACTAC--AGC-----------------AGCAGCAGCAG------CAGCA--------GCAGCAACAGCCAC---CGCCACCCACGTCCCAGATG------------------------------------------------CAGCAGTTGCATC-----------ATCACCTCCAGCAGCAG-----------CAGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAGCAGC-AGTCCTC-------------------------------------GCGATCG--GCTGCGAGTCC-CTTGTCGCCGCCCCGCCCTGGAGCACC---------------------------GCCCGGAGGCGGTAGCGGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................GCAGCAGCAGC-AGTCCTC-------------------------------------GCGATCG--G....................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................CAGCAGCAGC-AGTCCTC-------------------------------------GCGATCG--G....................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GCAGCAGC-AGTCCTC-------------------------------------GCGATCG--GCT..................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTCCTC-------------------------------------GCGATCG--GCTGCGAGTCC-CTTGTC...................................................................	30	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................GCAGTTGCATC-----------ATCACCTCCAGC............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................ACAGCCAC---CGCCACCCACGTCCC.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................CGCCGCCCCGCCCTGGAG..................................................	18	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................GCATC-----------ATCACCTCCAGCAGCAG-----------CAGC........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................CACCCACGTCCCAGATG------------------------------------------------C...............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................AGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAGCAGC-AGTC......................................................................................................................................	28	3	0.33	1	0	0	0	0	1	0
.............................................................................................................................................................................TCCAGCAGCAG-----------CAGCA------------------------ACA------------------------------GC------------A------.........................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................GC------------A------ACAGCAGCAGCAGC-AGTCC.....................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
................................................................................................................................................................................................................................ACA------------------------------GC------------A------ACAGCAGCAGCAGC-A.........................................................................................................................................	21	20	0.20	4	0	0	0	0	0	4
......................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGC-AGTCC.....................................................................................................................................	19	6	0.17	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................A------------------------------GC------------A------ACAGCAGCAGCAGC-A.........................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3
.................................................................................................................................................................................................................................................................GC------------A------ACAGCAGCAGCAGC-AGTC......................................................................................................................................	21	8	0.13	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................C------------A------ACAGCAGCAGCAGC-AGTC......................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................C------------A------ACAGCAGCAGCAGC-AGT.......................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0
.....................................AG------CAGCA--------GCAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................CAGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAGCAGC-..........................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................AGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAG...............................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................AGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAGC..............................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................AGCAGCAG-----------CAGCA------------------------ACA------------------------------GC------------A------ACAGC....................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................AG-----------CAGCA------------------------ACA------------------------------GC------------A------ACAGCAGCAGC..............................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

AACTAC--AGC-----------------AGCAGCAGCAG------CAGCAAC-----AACAGCAACAGCCAC---CGCCACCCACGTCCCAGATG------------------------------------------------CAGCAGTTGCATC-----------ATCACCTCCACCAGCAA-----------CAGCA------------------------GCA------------------------------GC------------A------GCAGTCCTC--------------------------------------------------GCGATCG--GCTGCGAGTCC-CTTGTCGCCGCCACGTCCGGGAGCACCGCCCGGTGGCGGCATCGGTGGCAGCAGTGGGGGCGGCAGTGGCAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACCGGACAGCCGGGCAC---------CACCACCAGCAG------CAGCAC------TACAGCAACCACCAC---AACGAGTCCGGCACAGAGCA------------------------------------------------CGGGAACTGTCACG-----------------GGCACGGGAA-----------CAGGC------------------------GCAGGAACG------------------------GG------------C------ACAGTCACAACATCGAGCCAGCCAGGC------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TG--------------AGCAGCGTGACCAACACGAGCAT------AGCGGGCACCGGCGGAACTGGCACAGG---------------------------------------------------------------------------------AACT-----------------GGGAC-----AGGAACAGGAACTGGAACCGGAACTGGTACTGGTACAGGCACTGGAACTGGCACAGGCACAGGAACTGGAACTGG------------A------ACTGGTACTG---------------------------------------------------------------------------------------------------------------------------GGACTGGAACTGGTACTGGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

C--------------------------------------------------------CACAGCCACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CGGGA------ACG-----------------GGCACGGGAT-----------CAGTC------------------------ACC------GGGACAGT------------------------------C------ACCACCTCCAGCTCTAGCCTGCCAGGA------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACAAC--GGC--------------------------AA------CGGC---ACCAAC--AACGGCAACAGC---AACAACAACGGCTCTGAGAA------------------------------------------------TCTAACCAAATTCTCTGTGGAAAT-------AGTG---------------------------------------------------------------------------------------------------------CAACAGCTGGAGTTTACCACATCCGCGGCCAATTCGCAACCGCAACAGATTAGCACGAATGTCACTGTGAAGGCGC---TCACCAATACGTCCGTGAAGAGTG-------------------------AACCAGGAGTGGGCGGTGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACCGGACAGCCGGGCACCACAGCCACCAGC---AGTGG------CGGC------AGCACAGCAACCACCAC---AACGAGTCCAGCGCAGAGTG------------------------------------------------CGGGAACGGGATCG-----------GGAACGGGCACAGGA-----------------------------------------TCAGGAACGGGCTCG------------------GG------------A------ACAGTAAACACCTCGAGTTTGCCAGGAG---------------------------------------------------------------------------------------------------------GAG------------GAGGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACGG------------------C---CACCAGCAGTAG------CAGCAC------CACCACCACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CGGGATCGGGAA----------------------------------------------------------------------CG------------------------------GC------------G------ACAGTGACCACCTCGAGTTTGCCAGGCG---------------------------------------------------------------------------------------------------------------GAGGAGGAGGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CACCGGGCAGCCGGGCACTGCAGCCACCACCTCGAGCAG------CGGCAC------CACAGTAACTACCAC---AACGAGTCCAGCGCAGAGTG------------------------------------------------CGGGA------ACG-----------------GGCACAGGAT-----------CTGGA------------------------TCA------------------------------GT------------A------ACAGTAACCACTTCGAGTTTGCCA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CACCGGACAGCCGGGAAGCACAGCGCCCAGCTCAAGCAG------CAGCACCACCAGCACAACAACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------ACA------------------------------GG------------A------ACAGTCGCCAACTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....GACAGCCGGGAAGCACAGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................AGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAG..........................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGCCGGGAAGCACAGCGCCC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCAT............................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGC..............................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................GAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATA...........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GTG------------------------------------------------CCGGATCAGGATCG-----------------GGC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GGATCAGGATCG-----------------GGCATAGGAA-----------CA..........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------C...........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AA-----------CAGGC------------------------ACA------------------------------GG------------A------ACAGTCGC.................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GGATCAGGATCG-----------------GGCATAGGAA-----------............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CAGTCGCCAACTCGAGTCTGCC..................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GTG------------------------------------------------CCGGATCAGGATCG-----------------GGT..............................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CACCGGACAGCCGGGAAGCACAGCGCCCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACAAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------ACG------------------------------GG------------A------ACAGTCGCCAACTCGAGTCTGCCAGGA------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................GCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGC..............................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------...............................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACCGGACAGCCGGGAAGCACAGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CGGACAGCCGGGAAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................GTG------------------------------------------------CCGGATCAGGATCG-----------------GGC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ATCG-----------------GGCATAGGAA-----------CAGGC------------------------AC.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CCGGATCAGGATCG-----------------GGCATA...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------...............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................AACAAGTCCGGCGCAGAGTG------------------------------------------------C...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CACCGGACAGCCGGGAAGCACAGCGCCCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACAAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGCATAGGAA-----------CAGGC------------------------ACG------------------------------GG------------A------ACAGTCGCCAACTCGAGTCTGCCAGGA------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................GCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------GGC..............................................................................................................................................................................................................................................................	25	1	3.00	3	0	2	1	0
..........................................................................................................................................................................................................................................................................................TCGCCAACTCGAGTCTGCCAG................................................................................................................................	21	1	1.00	1	1	0	0	0
...............................................................AACCACCAC---AACAAGTCCGGCGCAGAGTG------------------------------------------------................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................AGTCGCCAACTCGAGTCTGC...................................................................................................................................	20	1	1.00	1	1	0	0	0
.................................................................................................................................................GGATCAGGATCG-----------------GGCATAGG.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
........................................................................................CAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------.................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
......................................................................................CGCAGAGTG------------------------------------------------CCGGATCAGGATC...................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0

droYak3

CACCGGACAGCCGGGAAGCACAGCGACCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------GG------------A------ACAGTCTCCACCTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................AGCACAGCGACCAGCTCAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------GG------------A------ACA......................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................CAGAGTG------------------------------------------------CCGGATCAGGATC...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................GATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------GG------------................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................ATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------GG------------A------ACA......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................CACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CCG.............................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................ACA------------------------------GG------------A------ACAGTCTCCACCTCG..........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GTCTCCACCTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................GCAGAGTG------------------------------------------------CCGGATCAGGAT....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................ACCACCAC---AACGAGTCCGGC........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................CGCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------..............................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................GCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------G-----------------------GA------------------------...............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................GCAGAGTG------------------------------------------------CCGGATCAGGATCG-----------------G-----------------------.........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................CAGCACAGCAACCACCAC---AACG................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATCAGGATCG-----------------G-----------------------GA------------------------ACA------------------------------GG------------A------ACAGTC...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................CACCAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CC..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................CAC---AACGAGTCCGGCGCAGAGTG------------------------------------------------CCG.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AGCCGGACAGCCGGGAAGCACAGCGACCAGCTCAAGCAG------CAGCACCACCAGCACAGCAACCACCAC---AACGAGTCCGGCGCAGAGTT------------------------------------------------CCGGATCAGGATCG-----------------GTCATAGGAT-----------CAGGA------------------------ACA------------------------------GG------------A------ACAGTCGCCACCTCGAGTCTGCCA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................GCAGAGTT------------------------------------------------CCGGATCAGGAT....................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	1	0
................................................................................................................................................................................CATAGGAT-----------CAGGA------------------------ACA------------------------------GG------------................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
............................................................................................GTT------------------------------------------------CCGGATCAGGATCG-----------------GTC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................GCAGAGTT------------------------------------------------CCGGATCAGGATCG-----------------GTC..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................GCGCAGAGTT------------------------------------------------CCGGATCAGGATCG-----------------GT...............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................G-----------------GTCATAGGAT-----------CAGGA------------------------ACA------------------------------..............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................................................AGCACAGCAACCACCAC---AACGAGTCCG..........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................CAGGATCG-----------------GTCATAGGAT-----------CAGGA------------------------AC.............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................AGAGTT------------------------------------------------CCGGATCAGGAT....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................CATAGGAT-----------CAGGA------------------------ACA------------------------------GG------------A------.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................ACCAC---AACGAGTCCGGCGCAGAG..................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0

dpe_406

scaffold_0:6391965-6392054 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-10.0	-9.7	-9.5