ID:

dpe_392

 Coordinate:

scaffold_0:4877153-4877303 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -11.0 -10.8 -10.8

Flybase annnotation

exon [dper_GLEANR_5805:1]; CDS [Dper\GL23470-cds]; intron [Dper\GL23470-in]

No Repeatable elements found

mature
  1. scaffold_10:2385947-2385971 +
  2. dpe_392  scaffold_0:4877199-4877223 -
  3. scaffold_0:6163919-6163943 +
  4. scaffold_0:6704684-6704708 -
  5. scaffold_0:6825508-6825532 +
  6. scaffold_0:9907776-9907800 +
  7. scaffold_0:10684648-10684672 +
  8. scaffold_2:982431-982455 -
  9. scaffold_2:6342322-6342346 -
  10. scaffold_2:8251945-8251969 +
  11. scaffold_3:6432873-6432897 +
  12. scaffold_3:6692229-6692253 -
  13. scaffold_4:2561318-2561342 -
  14. scaffold_4:4466139-4466163 -
  15. scaffold_7:1982285-1982309 +
  16. scaffold_7:3042195-3042219 +
  17. scaffold_16:851117-851141 -
  18. scaffold_19:1635443-1635467 -
  19. scaffold_46:19865-19889 +
  20. scaffold_46:69496-69520 -
star
  1. scaffold_21:457591-457618 -
  2. scaffold_0:33363-33390 +
  3. dpe_392  scaffold_0:4877252-4877279 -
  4. scaffold_0:6414700-6414727 +
  5. scaffold_0:6704737-6704764 -
  6. scaffold_0:6825452-6825479 +
  7. scaffold_0:9907720-9907747 +
  8. scaffold_0:10684592-10684619 +
  9. scaffold_0:10772146-10772173 +
  10. scaffold_69:131960-131987 +
  11. scaffold_2:8251889-8251916 +
  12. scaffold_3:3194358-3194385 +
  13. scaffold_4:4466192-4466219 -
  14. scaffold_7:2579239-2579266 +
  15. scaffold_7:3646132-3646159 +
  16. scaffold_19:1635496-1635523 -
  17. scaffold_48:129498-129525 +

Sense Strand Reads

--------------------------------------------######---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTATGAGCAAAAGTGCCTTGTGTGTCTGCCTACAGTGGCTTCAAATGACAGTAAGTCCTGATGTCACAGGGCACTCCCCAAAAACAGCCGCTGTTCCACGGCTACTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAGTTGCGATGCCAAAACGACCAGCGGCGCCCTTTGGCGCAGTTGCGGCCCACTACTCCGCCCTGCCTCAGCCCCCAAAAGACGAATTTCAC
**************************************************************************................((......((((((((..((((..............))))....)))...)))))........))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 M021
embryo
 V057
head
 V042
embryo
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAG................................................................................................ 25 0 20 1.45 29 29 0 0 0 0
..........................................................................................................................................................................................CGCCCTTTGGCGCAGTTGCGGC........................................... 22 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................CGAGCCACAGAGTCTGCAGTTGCGA................................................................................... 25 0 5 1.00 5 5 0 0 0 0
.............................................................................................................................................................TGCAGTTGCGATGCCAAAACGACCAGC................................................................... 27 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................CGAGCCACAGAGTCTGCAGTTGCGATG................................................................................. 27 0 4 0.75 3 3 0 0 0 0
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCTGCAGT........................................................................................ 26 0 4 0.75 3 3 0 0 0 0
..............................................................................................................................................TCGAGCCACAGAGTCTGCAGTTGCGA................................................................................... 26 0 5 0.60 3 3 0 0 0 0
....................................................................................................................................................CACAGAGTCTGCAGTTGCGATG................................................................................. 22 0 4 0.50 2 2 0 0 0 0
....................................................................................................................................................CACAGAGTCTGCAGTTGCGAT.................................................................................. 21 0 4 0.50 2 2 0 0 0 0
..........................................................................................................................................AAAGTCGAGCCACAGAGTCTGCAGTC....................................................................................... 26 1 5 0.40 2 2 0 0 0 0
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAG.................................................................................................. 23 0 20 0.35 7 5 2 0 0 0
....................................................................................................................................................CACAGAGTCTGCAGTTGTGAT.................................................................................. 21 1 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................ACAGAGTCTGCAGTTGCGATG................................................................................. 21 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................AGTCGAGCCACAGAGTCTGCAGT........................................................................................ 23 0 5 0.20 1 0 1 0 0 0
..........................................................................................................................................AAAGTCGAGCCACAGAGTCTGCAGTTGC..................................................................................... 28 0 5 0.20 1 1 0 0 0 0
.............................................................................................................................................GTCGAGCCACAGAGTCTGCAGTTGCGA................................................................................... 27 0 5 0.20 1 1 0 0 0 0
..........................................................................................................................................AAAGTCGAGCCACAGAGTCTGCAGT........................................................................................ 25 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGA................................................................................................. 24 0 20 0.20 4 0 3 0 0 1
...............................................................................................................................................CGAGCCACAGAGTCTGCAGTTGCG.................................................................................... 24 0 6 0.17 1 1 0 0 0 0
....................................................................................................................................................CACAGAGTCTGCAGTTGCGTTCC................................................................................ 23 2 6 0.17 1 1 0 0 0 0
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAGTC.............................................................................................. 27 0 20 0.15 3 3 0 0 0 0
........................................................................................................................................................................................................................CCGCCCTGCCTCAGCCCC................. 18 0 8 0.13 1 0 0 1 0 0
..................................................................................................................................TTACAGTTAAAGTCGAGC....................................................................................................... 18 0 20 0.10 2 0 0 2 0 0
..................................................................................................................................TTACAGTTAAAGTCGAGCCACA................................................................................................... 22 0 20 0.10 2 2 0 0 0 0
............................................ATGACAGTAAGTCCTGATGTCA......................................................................................................................................................................................... 22 0 16 0.06 1 0 1 0 0 0
............................................ATGACAGTAAGTCCTGATGTCACAG...................................................................................................................................................................................... 25 0 16 0.06 1 0 1 0 0 0
............................................ATGACAGTAAGTCCTGATGTCACA....................................................................................................................................................................................... 24 0 16 0.06 1 0 1 0 0 0
..........................................................................TCCCCAAAAACAGCCGCTGTTCCACGGC..................................................................................................................................................... 28 0 17 0.06 1 0 1 0 0 0
..........................................................................................................................................................................................GGCCCTTTGGCGCAGCTGG.............................................. 19 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCTG............................................................................................ 22 0 20 0.05 1 0 1 0 0 0
...........................................AATGACAGTAAGTTTTGAG............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0
...................................................................................................................................TACAGTTAAAGTCGAGCCACAG.................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................TACAGTTAAAGTCGAGCCAC.................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................CAGCGGTGGCCTTCGGCGCAG.................................................. 21 3 20 0.05 1 0 0 0 1 0
...................................................................................................................................TACAGTTAAAGTCGAGCCACAGAG................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
..................................GTGGCTACAAATGGCAGT....................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CATACTCGTTTTCACGGAACACACAGACGGATGTCACCGAAGTTTACTGTCATTCAGGACTACAGTGTCCCGTGAGGGGTTTTTGTCGGCGACAAGGTGCCGATGAGGCACGAAAGGTGGAAGAAGCGTAAATGTCAATTTCAGCTCGGTGTCTCAGACGTCAACGCTACGGTTTTGCTGGTCGCCGCGGGAAACCGCGTCAACGCCGGGTGATGAGGCGGGACGGAGTCGGGGGTTTTCTGCTTAAAGTG
************************************************************************************************................((......((((((((..((((..............))))....)))...)))))........))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V057
head
 V042
embryo
...................................................................................................................GGTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 25 0 20 14.75 295 204 85 3 0 3
....................................................................................................................GTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 24 0 20 6.00 120 56 62 0 0 2
..................................................................................................................AGGTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 26 0 20 2.80 56 46 9 0 0 1
.....................................................................................................................TGGAAGAAGCGTAAATGTCAATT............................................................................................................... 23 0 20 1.50 30 13 17 0 0 0
......................................................................................................................GGAAGAAGCGTAAATGTCAATT............................................................................................................... 22 0 20 1.45 29 9 14 5 0 1
.................................................................................................................AAGGTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 27 0 20 1.30 26 21 4 0 0 1
...................................................................................................................GGTGGAAGAAGCGTAAATGTCAAT................................................................................................................ 24 0 20 1.15 23 23 0 0 0 0
..............................ATGTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 24 0 18 1.06 19 19 0 0 0 0
...................................................................................................................GGTGGAAGAAGCGTAAATGTCAATTT.............................................................................................................. 26 0 20 0.80 16 13 1 2 0 0
.............................GATGTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 25 0 18 0.72 13 13 0 0 0 0
................................................................................................................AAAGGTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 28 0 20 0.60 12 9 3 0 0 0
............................GGATGTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 26 0 18 0.44 8 8 0 0 0 0
................................................GTCATTCAGGACTACAGTGTCCCGT.................................................................................................................................................................................. 25 0 15 0.40 6 5 0 1 0 0
............................................................................................................CACGAAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 25 0 20 0.40 8 5 3 0 0 0
..............................ATGTCACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 23 0 18 0.39 7 7 0 0 0 0
...................................................................................TGTCGGCGACAGGGTGCGGCTG.................................................................................................................................................. 22 3 3 0.33 1 0 0 0 1 0
...............................................................................................................................................GCTCGGTGTCTCAGACGTCAACGC.................................................................................... 24 0 6 0.33 2 2 0 0 0 0
....................................CCGAAGTTTACTGTCATTCAGGACT.............................................................................................................................................................................................. 25 0 18 0.28 5 2 0 3 0 0
.................................................................................................................AAGGTGGAAGAAGCGTAAATGTCAAT................................................................................................................ 26 0 20 0.25 5 5 0 0 0 0
..............................................................................................................................................................................TTGCTGGTCGCCGCGGGAAACCGC..................................................... 24 0 16 0.25 4 4 0 0 0 0
.....................................CGAAGTTTACTGTCATTCAGGACTAC............................................................................................................................................................................................ 26 0 18 0.22 4 3 0 0 0 1
.............................GATGTCACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 24 0 18 0.22 4 4 0 0 0 0
............................GGATGTCACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 25 0 18 0.22 4 3 1 0 0 0
........................AGACGGATGTCACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 29 0 18 0.22 4 1 0 3 0 0
................................................................................................................AAAGGTGGAAGAAGCGTAAATGTCAAT................................................................................................................ 27 0 20 0.20 4 3 1 0 0 0
....................................................................................................................GTGGAAGAAGCGTAAATGTCAATTT.............................................................................................................. 25 0 20 0.20 4 4 0 0 0 0
.......................................................................................................................................CAATTTCAGCTCGGTGTCTCAGACGT.......................................................................................... 26 0 20 0.20 4 4 0 0 0 0
..........................................................................................................GGCACGAAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0
.............................................................................................................................................................................................GGAAAACGCGTCAAGGCCGTG......................................... 21 3 5 0.20 1 0 1 0 0 0
....................................................................................................................GTGGAAGAAGCGTAAATGTCAAT................................................................................................................ 23 0 20 0.20 4 4 0 0 0 0
...........................................TTACTGTCATTCAGGACTACAGTGT....................................................................................................................................................................................... 25 0 16 0.19 3 3 0 0 0 0
.........................GACGGATGTCACCGAAGTTTACTGTCA....................................................................................................................................................................................................... 27 0 18 0.17 3 0 0 3 0 0
....................................CCGAAGTTTACTGTCATTCAGGACTAC............................................................................................................................................................................................ 27 0 18 0.17 3 1 0 2 0 0
..................................CACCGAAGTTTACTGTCATTCAGGACT.............................................................................................................................................................................................. 27 0 18 0.17 3 3 0 0 0 0
.............................................ACTGTCATTCAGGACTACAGTGTCCCGT.................................................................................................................................................................................. 28 0 13 0.15 2 2 0 0 0 0
..................................................................................................................AGGTGGAAGAAGCGTAAATGTCAAT................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
......................................................................................................................GGAAGAAGCGTAAATGTCAATTT.............................................................................................................. 23 0 20 0.15 3 3 0 0 0 0
...................................................................................................................GGTGGAAGAAGCGTAAGTGTCAATT............................................................................................................... 25 1 20 0.15 3 3 0 0 0 0
......................................................................................................................GGAAGAAGCGTAAATGTCAATTTCAGCT......................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
......................................................................................CGGCGACAAAGTGCCAATGT................................................................................................................................................. 20 3 7 0.14 1 0 0 0 1 0
...........................................TTACTGTCATTCAGGACTACAGTGTC...................................................................................................................................................................................... 26 0 16 0.13 2 0 0 2 0 0
...........................CGGATGTCACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 26 0 18 0.11 2 2 0 0 0 0
................................GTCACCGAAGTTTACTGTCATTCAGGACT.............................................................................................................................................................................................. 29 0 18 0.11 2 1 0 1 0 0
...............................TGTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 23 0 18 0.11 2 2 0 0 0 0
..........................ACGGATGTCACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 27 0 18 0.11 2 2 0 0 0 0
...................................ACCGAAGTTTACTGTCAT...................................................................................................................................................................................................... 18 0 18 0.11 2 0 1 0 0 1
................................GTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 22 0 18 0.11 2 2 0 0 0 0
..................................................................................................................................................................................TGGTCGCCGCGGGAAACCGC..................................................... 20 0 19 0.11 2 2 0 0 0 0
..................................................................................................................TGGTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 26 1 20 0.10 2 0 2 0 0 0
..............................................................................................................CGAAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
.........................................................................................................AGGCACGAAAGGTGGAAGAAGCGT.......................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................GAAGCGTAAATGTCAATTTCAGCTCGGT..................................................................................................... 28 0 20 0.10 2 2 0 0 0 0
.....................................................................................TCGGCGACAGGGTGCGGATT.................................................................................................................................................. 20 3 20 0.10 2 0 0 0 2 0
..............................................................................................................CGAAAGGTGGAAGAAGCGTAAATGT.................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
.......................................................................................................................GAAGAAGCGTAAATGTCAATT............................................................................................................... 21 0 20 0.10 2 1 1 0 0 0
...................................................................................................................GGTTGAAGAAGCGTAAATGTCAATT............................................................................................................... 25 1 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................ACGGTTATGCACGTCGCCGC............................................................... 20 3 11 0.09 1 1 0 0 0 0
......................................................CAGGACTACAGTGTCCCGTGAGGGGTT.......................................................................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0
..............................................CTGTCATTCAGGACTACAGTGTCCCGT.................................................................................................................................................................................. 27 0 13 0.08 1 1 0 0 0 0
......................................................................................................................................................GTGTCAGACGTCAACGAT................................................................................... 18 2 13 0.08 1 0 0 0 1 0
.............................................................ACAGTGTCCCGTGAGGGGTTT......................................................................................................................................................................... 21 0 14 0.07 1 1 0 0 0 0
.........................................................AACTACAGTGTCCCGTGAGGGGTTT......................................................................................................................................................................... 25 1 14 0.07 1 1 0 0 0 0
...........................................................CTACAGTGTCCCGTGAGGGGTTT......................................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0 0
...............................................TGTCATTCAGGACTACAGTGTCCCGT.................................................................................................................................................................................. 26 0 15 0.07 1 1 0 0 0 0
..............................................................................................................................................................................TTGCTGGTCGCCGCGGGTAACCGCGT................................................... 26 1 15 0.07 1 1 0 0 0 0
................................................GTCATTCAGGACTACAGTGTCCCG................................................................................................................................................................................... 24 0 15 0.07 1 1 0 0 0 0
.............................................AATGTCATTCAGGACTACAGTGTCCCGT.................................................................................................................................................................................. 28 1 15 0.07 1 1 0 0 0 0
.........................................GTTTACCGTCATTCAGGACTACAGT......................................................................................................................................................................................... 25 1 16 0.06 1 1 0 0 0 0
..........................................TTTACTGTCATTCAGGACTACAGT......................................................................................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0
.............................................................................................................................................................................TTTGCTGGTCGCCGCGGGAAACCG...................................................... 24 0 16 0.06 1 1 0 0 0 0
................................................GTCATTCAGGACTACACTGTCCCGT.................................................................................................................................................................................. 25 1 16 0.06 1 1 0 0 0 0
................................................................................................................................................................................GCTGGTCGCCGCGGGAAACCGC..................................................... 22 0 16 0.06 1 0 0 0 0 1
...............................................................................................................................................................................TGCTGGTCGCCGCGGGAAAC........................................................ 20 0 17 0.06 1 1 0 0 0 0
..............................................................................................................................................................................TTGCTGGTCGCCGCGGGAAAC........................................................ 21 0 17 0.06 1 1 0 0 0 0
....................................................................................................................................................................................GTCGCCGCGGGAAACCGCGTC.................................................. 21 0 17 0.06 1 1 0 0 0 0
....................................................................................................................................................................................GTCGCCGCGGGAAACCGCGTCAAC............................................... 24 0 17 0.06 1 1 0 0 0 0
.................................................................................................................................................................................CTGGTCGCCGCGGGAAACCGCGT................................................... 23 0 17 0.06 1 1 0 0 0 0
............................TGATGTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 26 1 18 0.06 1 1 0 0 0 0
.............................GATGTCACCGAAGTTTGCTGTCATT..................................................................................................................................................................................................... 25 1 18 0.06 1 1 0 0 0 0
..................................CACCGAAGTTTACTGTCCTTCAGGAC............................................................................................................................................................................................... 26 1 18 0.06 1 1 0 0 0 0
..............................ATGTCACCGAAGTTTACTGTCA....................................................................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0 0
................................GTCACCGAAGTTTACTGTCATTCAGGAC............................................................................................................................................................................................... 28 0 18 0.06 1 1 0 0 0 0
............................GGATGTCACCGAAGTTTACTGTCATG..................................................................................................................................................................................................... 26 1 18 0.06 1 1 0 0 0 0
...........................CGGATGTCACCGAAGTTTACTGTCA....................................................................................................................................................................................................... 25 0 18 0.06 1 1 0 0 0 0
.............................GATGTCACCGAAGTTGACTGTCAT...................................................................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0
.................................TCACCGAAGTTTACTGTCATTCAGGACT.............................................................................................................................................................................................. 28 0 18 0.06 1 1 0 0 0 0
.............................GATGTCACCGAAATTTACTGTCAT...................................................................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0
..................................CACCGAAGTTTACTGTCATTCAGGACTAC............................................................................................................................................................................................ 29 0 18 0.06 1 1 0 0 0 0
............................GGATGTCACCGAAGTTTACTGTCAAT..................................................................................................................................................................................................... 26 1 18 0.06 1 1 0 0 0 0
....................................CCGAAGTTTACTGTCACTCAGGACT.............................................................................................................................................................................................. 25 1 18 0.06 1 1 0 0 0 0
..............................ATTTCACCGAAGTTTACTGTCATT..................................................................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0
..............................ATGTCACCGAAGTTTGCTGTCATT..................................................................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0
.............................GATGTCACCGAAGTTTACTGTCATTCA................................................................................................................................................................................................... 27 0 18 0.06 1 1 0 0 0 0
............................GGATGTCACCGAAGGTTACTGTC........................................................................................................................................................................................................ 23 1 18 0.06 1 1 0 0 0 0
.................................................................................................................................................................................CTGGTCGCCGCGGGAAACCGC..................................................... 21 0 19 0.05 1 1 0 0 0 0
................................................GTCATTCAGGACTACAGT......................................................................................................................................................................................... 18 0 19 0.05 1 0 0 1 0 0
...............................................................................................................................GTAAATGTCAATTTCAGCTCGGTGTCT................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................TCAATTTCAGCTCGGTGTCTCAG.............................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.......................CAGACGGATGTCACCGAAGTTT.............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................................GGTGGAAGAAGCGTAAATGACAATT............................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................GCGGAGTGATGGGGCGGGA............................ 19 3 20 0.05 1 0 0 0 1 0
.............................GATGTCACCGAAGTTTACT........................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
................................................................................................................AAAGGTGGAAGAAGCGTAAATGTCAA................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
..........................................................................................................GGCACGAAAGGTGGAAGAAGCGT.......................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.............................................................................GGTTTTTGTCGGCGACAAGGTGCCGAT................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.........................................................................................................AGGCACGAAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
............................................................................................................CACGAAAGGTGGAAGAAGCGTAAATGT.................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
......................................................CAGGACTACAGTGTCCCGTGAGGG............................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................CAGCTCGGTGTCTCAGACGT.......................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..........................................................................................................GGCACAAAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
......................................................................................................................GGAAGAAGCGTAAATGTCAAT................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
..................................................................................................................AGGTTGAAGAAGCGTAAGTGTCAATT............................................................................................................... 26 2 20 0.05 1 1 0 0 0 0
...................................................................................................................GGTAGAAGAAGCGTAAATGTCAATT............................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................TGGAAGAAGCGTAAATGTCAA................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................................GGCACGAAAGGTGGAAGAAGCG........................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
..........................................................................................................GGCACGAAAGGTGGAAGAAGCGTAAA....................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.................................................................................................................AAGGTGGAAGAAGCGTAAAT...................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.................................................................................................................AAGGTGGAAGAAGCGTAAGTGTCAATT............................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................CGTAAATGTCAATTTCAGCTCGGTGTCT................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
................................................................................................................AAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
......................................................................................................................GGAAGAAGCGTAAATGTCAATTTCAG........................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................GAAGAAGCGTAAATGTCAATTT.............................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................ATTTCAGCTCGGTGTCTCAGACGT.......................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..................................................................................................................AGGTGGAAGAAGCGTAAGTGTCAATT............................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
..................................................................................................................AGGTGGAAGAAGCGTAAATGTCAA................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
..........................................................................................................GGCACGAAAAGTGGAAGAAGCGTAAA....................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
....................................................................................................................GTGGAAGAAGCGTAAGTGTCAATT............................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
........................................................................................................................................AATTTCAGCTCGGTGTCTCAGACG........................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...................................................................................................................GGTGGAAGAAGCGTAAAGGTCAATTT.............................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................AGAAGCGTAAATGTCAATT............................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................GAAAGGTGGAAGAAGCGTAAAT...................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.............................................................................................................ACGAAAGGTGGAAGAAGCGTAAATG..................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
......................................................................................................................GGTGGAAGCGTAAATGTCAATT............................................................................................................... 22 2 20 0.05 1 1 0 0 0 0
......................................................................................................................GGAAGAAGCGTAAATGTCAATTTCAGC.......................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...................................................................................................................GGTGCAAGAAGCGTAAATGTCAATT............................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
....................................................................................................................GTGGAATAAGCGTAAATGTCAATT............................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
..............................................................................................AGCTGCAGATGGGGCACGA.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
...................................................................................................................GGTGGAAGAAGCGTAAATGTCAA................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................GGGGAAGAAGCGTAAATGTCAAT................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
..................................................................................................................AGGTAGAAGAAGCGTAAATGTCAATT............................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...................................................................................................................TGTGGAAGAAGCGTAAATGTCAATT............................................................................................................... 25 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:4877103-4877353 - dpe_392 GTATGAGCAAAAGTGCCTTGTGTGTCTGCCTACAGTGGCTTCAAATGACAGTAAGTCCTGATGTCACAGGGCACTCCCCAAAAACAGCCGCTGTTCCACGGCTACTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAGTTGCGATGCCAAAACGACCAGCGGCGCCCTTTGGCGCAGTTGCGGCCCACTACTCCGCCCTGCCTCAGCCCCCAAAAGACGAATTTCAC
dp5 3:7506777-7507020 - GTATGAACATAAGTGCCTTGTGCGTCTGCCTACAGTGGCTTCAAATGACAGTAAGTCCTGATGTCACAGGGCACTCC-CAAAAACAGCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAG---CGATGCCGAAACGACCAGCGGCGCCCTTTGGCGCAGTTGTGGCCCACTACTC---CCTGCCTCAGCCACCAGAAGACGAATTTCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GTATGAGCAAAAGTGCCTTGTGTGTCTGCCTACAGTGGCTTCAAATGACAGTAAGTCCTGATGTCACAGGGCACTCCCCAAAAACAGCCGCTGTTCCACGGCTACTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAGTTGCGATGCCAAAACGACCAGCGGCGCCCTTTGGCGCAGTTGCGGCCCACTACTCCGCCCTGCCTCAGCCCCCAAAAGACGAATTTCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAG................................................................................................25201.45290000029
..........................................................................................................................................................................................CGCCCTTTGGCGCAGTTGCGGC...........................................2211.001010000
...............................................................................................................................................CGAGCCACAGAGTCTGCAGTTGCGA...................................................................................2551.005000005
.............................................................................................................................................................TGCAGTTGCGATGCCAAAACGACCAGC...................................................................2711.001010000
...............................................................................................................................................CGAGCCACAGAGTCTGCAGTTGCGATG.................................................................................2740.753000003
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCTGCAGT........................................................................................2640.753000003
..............................................................................................................................................TCGAGCCACAGAGTCTGCAGTTGCGA...................................................................................2650.603000003
....................................................................................................................................................CACAGAGTCTGCAGTTGCGATG.................................................................................2240.502000002
....................................................................................................................................................CACAGAGTCTGCAGTTGCGAT..................................................................................2140.502000002
..........................................................................................................................................AAAGTCGAGCCACAGAGTCTGCAGTC.......................................................................................2650.402000002
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAG..................................................................................................23200.357020005
.....................................................................................................................................................ACAGAGTCTGCAGTTGCGATG.................................................................................2140.251000001
............................................................................................................................................AGTCGAGCCACAGAGTCTGCAGT........................................................................................2350.201010000
..........................................................................................................................................AAAGTCGAGCCACAGAGTCTGCAGTTGC.....................................................................................2850.201000001
.............................................................................................................................................GTCGAGCCACAGAGTCTGCAGTTGCGA...................................................................................2750.201000001
..........................................................................................................................................AAAGTCGAGCCACAGAGTCTGCAGT........................................................................................2550.201000001
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGA.................................................................................................24200.204031000
...............................................................................................................................................CGAGCCACAGAGTCTGCAGTTGCG....................................................................................2460.171000001
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAGTC..............................................................................................27200.153000003
........................................................................................................................................................................................................................CCGCCCTGCCTCAGCCCC.................1880.131100000
..................................................................................................................................TTACAGTTAAAGTCGAGC.......................................................................................................18200.102200000
..................................................................................................................................TTACAGTTAAAGTCGAGCCACA...................................................................................................22200.102000002
............................................ATGACAGTAAGTCCTGATGTCA.........................................................................................................................................................................................22160.061010000
............................................ATGACAGTAAGTCCTGATGTCACAG......................................................................................................................................................................................25160.061010000
............................................ATGACAGTAAGTCCTGATGTCACA.......................................................................................................................................................................................24160.061010000
..........................................................................TCCCCAAAAACAGCCGCTGTTCCACGGC.....................................................................................................................................................28170.061010000
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCTG............................................................................................22200.051010000
...................................................................................................................................TACAGTTAAAGTCGAGCCACAG..................................................................................................22200.051010000
...................................................................................................................................TACAGTTAAAGTCGAGCCAC....................................................................................................20200.051000001
...................................................................................................................................TACAGTTAAAGTCGAGCCACAGAG................................................................................................24200.051000001
dp5
GTATGAACATAAGTGCCTTGTGCGTCTGCCTACAGTGGCTTCAAATGACAGTAAGTCCTGATGTCACAGGGCACTCC-CAAAAACAGCCGCTGTTCCACGGCTATTCCGTGCTTTCCACCTTCTTCGCATTTACAGTTAAAGTCGAGCCACAGAGTCTGCAG---CGATGCCGAAACGACCAGCGGCGCCCTTTGGCGCAGTTGTGGCCCACTACTC---CCTGCCTCAGCCACCAGAAGACGAATTTCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCTGCAG---CG....................................................................................2780.3830000000030
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAG................................................................................................25120.3340000002020
........................................................................................................................................TTAAAGTCGAGCCACAGAGTCTGC...........................................................................................24120.1720000000200
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAGT...............................................................................................26120.1720000000020
................................................................................................CACGGCTATTCCGTGCTTTCCACCTT.................................................................................................................................26130.1520000000020
.............................................................................................................................................................TGCAG---CGATGCCGAAACGACCAGCGGC................................................................2780.1310100000000
..............................................................................................................................................................................................................................TGCCTCAGCCACCAGAAGACGAATTTCA.2880.1310000000010
............................................................................................................................................................................................................................CCTGCCTCAGCCACCAGAAGACGAATT....2780.1310000100000
.............................................................................................................................................................TGCAG---CGATGCCGAAACGACCAGCGG.................................................................2680.1310100000000
..........................................................................................................................................AAAGTCGAGCCACAGAGT...............................................................................................18170.1220100000010
.............................................................................................................................................GTCGAGCCACAGAGTCTGCAG---C.....................................................................................22100.1010100000000
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCTGCAG---......................................................................................25110.0910000000010
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAGAGTC..............................................................................................27110.0910100000000
......................................................................................................................................AGTTAAAGTCGAGCCACAGAG................................................................................................21120.0810000001000
..................................................................................................................................TTACAGTTAAAGTCGAGCCAC....................................................................................................21120.0810000001000
...................................................................................................................................TACAGTTAAAGTCGAGCCACAGAGT...............................................................................................25120.0810000000100
..................................................................................................................................TTACAGTTAAAGTCGAGCCACAG..................................................................................................23120.0810100000000
........................................................................................................................................TTAAAGTCGAGCCACAGAGTCTG............................................................................................23120.0810100000000
..................TGTGCGTCTGCCTACAGTGGCTTCAAAT.............................................................................................................................................................................................................28120.0810000001000
.........................................................................................................................................TAAAGTCGAGCCACAGAGTCT.............................................................................................21120.0810100000000

Generated: 06/08/2015 at 02:39 PM