ID:

dpe_38

 Coordinate:

scaffold_7193:445-504 +

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.6 -27.6 -27.4

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dpe_34  scaffold_10:2581447-2581468 +
  2. dpe_40  scaffold_10:2582158-2582179 +
  3. dpe_35  scaffold_10:2584996-2585017 +
  4. dpe_36  scaffold_8585:695-716 +
  5. dpe_38  scaffold_7193:482-503 +
  6. dpe_39  scaffold_9415:578-599 +
  7. dpe_37  scaffold_7821:401-422 +
star
  1. dpe_36  scaffold_8585:658-678 +
  2. dpe_38  scaffold_7193:445-465 +
  3. dpe_37  scaffold_7821:364-384 +
  4. dpe_88  scaffold_7821:1079-1099 +

Sense Strand Reads

GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAAGGCACATTCGTGCTATATGGCAAACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGA
***********************************.((((.(((.((((.(((((((..(((..(((((((((((.....))))..)))))))..)))..))))))).)))).)))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V050
head
 V042
embryo
 M021
embryo
 V057
head
.......................................................................................TAAGTCTGTTGAGTGCCATAGA................................................... 22 0 7 237.43 1662 1569 38 24 18 8 5
.......................................................................................TAAGTCTGTTGAGTGCCATAG.................................................... 21 0 7 208.14 1457 1415 24 13 2 0 3
.......................................................................................TAAGTCTGTTGAGTGCCATAGAA.................................................. 23 1 7 19.14 134 133 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATA..................................................... 20 0 7 15.29 107 97 5 5 0 0 0
..................................................TATGGCAAACAGTTGATTTAT......................................................................................... 21 0 4 11.50 46 42 0 0 4 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAA................................................. 24 2 7 8.14 57 57 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGT................................................... 22 1 7 4.86 34 34 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAT...................................................... 19 0 7 4.00 28 22 4 2 0 0 0
........................................................................................AAGTCTGTTGAGTGCCATAGA................................................... 21 0 7 3.14 22 21 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATT..................................................... 20 1 7 3.14 22 16 5 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCA....................................................... 18 0 7 3.14 22 11 6 5 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAA.................................................... 21 1 7 3.14 22 21 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAT.................................................. 23 1 7 3.00 21 21 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTT.................................................... 21 2 7 1.86 13 10 3 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAG.................................................. 23 0 7 1.86 13 13 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAA................................................ 25 2 7 1.43 10 10 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGC................................................... 22 1 7 1.14 8 7 1 0 0 0 0
..................................................TATGGCAAACAGTTGATTTATT........................................................................................ 22 1 4 1.00 4 2 2 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATC..................................................... 20 1 7 1.00 7 6 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAA................................................... 22 1 7 1.00 7 7 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTC.................................................... 21 2 7 1.00 7 7 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCG.................................................... 21 1 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTT.................................................. 23 2 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTC.................................................. 23 2 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAATTCTGTTGAGTGCCATAG.................................................... 21 1 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGG................................................... 22 1 7 0.71 5 2 0 0 0 3 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTT................................................... 22 3 8 0.63 5 3 1 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCCC................................................... 22 3 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAA.................................................. 23 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAA...................................................... 19 1 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCC................................................. 24 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAACTCTGTTGAGTGCCATAG.................................................... 21 1 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAT................................................. 24 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCT.................................................... 21 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAT.................................................... 21 1 7 0.57 4 4 0 0 0 0 0
......................................................................................CTAAGTCTGTTGAGTGCCATAGA................................................... 23 1 7 0.57 4 3 0 0 0 0 1
.......................................................................................TAAGTCTGTTGAGTGCCATTCC................................................... 22 3 7 0.57 4 4 0 0 0 0 0
..................................................TATGGCAAACAGTTGATTT........................................................................................... 19 0 4 0.50 2 2 0 0 0 0 0
.......................................................................................TAAGTCTTTTGAGTGCCATAGA................................................... 22 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCCGTTGAGTGCCATAGA................................................... 22 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATATT................................................... 22 2 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGACATAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGGGTGCCATAGA................................................... 22 1 7 0.43 3 3 0 0 0 0 0
........................................................................................AAGTCTGTTGAGTGCCATAG.................................................... 20 0 7 0.43 3 2 1 0 0 0 0
.......................................................................................TAAGTCTGGTGAGTGCCATAGA................................................... 22 1 7 0.43 3 0 3 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTT..................................................... 20 2 7 0.43 3 1 2 0 0 0 0
.......................................................................................TAAGTCTGTTGAGCGCCATAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGCCTGTTGAGTGCCATAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCACAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
..................................................TATGGCAAACAGATGACATATA........................................................................................ 22 3 3 0.33 1 0 0 0 1 0 0
.......................................................................................TAAGTCCGTTGAGTGCCATAG.................................................... 21 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCC.................................................... 21 2 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGCCTGTTGAGTGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAAAA.................................................... 21 2 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTAA.................................................. 23 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTTAA................................................... 22 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................CAAGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
....................................................................................TCATAAGTCTGTTGAGTGCCATAGA................................................... 25 0 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTCG.................................................. 23 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTC................................................... 22 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCT................................................. 24 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTC................................................. 24 2 7 0.29 2 1 0 1 0 0 0
.......................................................................................TAATTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTTCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGGGCCATAG.................................................... 21 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAATGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCG................................................... 22 3 7 0.29 2 2 0 0 0 0 0
................................................TATATGGCAAACAGTTGATT............................................................................................ 20 0 4 0.25 1 1 0 0 0 0 0
..................................................TATGGCAAACAGTTGATTTA.......................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAAG................................................. 24 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCGGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGACTGTTGAGAGCCATAGA................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................GAAGTCTGTTGAGTGCCATA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCCT...................................................... 19 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
..........................................................................................GTCTGTTGAGTGCCATAGA................................................... 19 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAAA.............................................. 27 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAGA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATGG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGACTGCCATAGAA.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCCTAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGCCC................................................. 24 2 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCCGTTGAGTGCCATAGAAAA................................................ 25 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCACAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAATCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTAAGTGCCAT...................................................... 19 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTT...................................................... 19 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATC................................................. 24 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAAA................................................. 24 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGATGAGTGCCATAG.................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTTTGTTGAGTGCCATAGAT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTCAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGACTGTTGAGTGCCATAG.................................................... 21 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCCC................................................ 25 3 7 0.14 1 1 0 0 0 0 0
..............................................................................TCTAGTTCATAAGTCTGTTGAGTGC......................................................... 25 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGTCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCAATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTTCCATAGAT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCCTAGT................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................TAAGTCTGTTGAGTGCCGTAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGGTGAGTGCCATAG.................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCTT................................................... 22 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAG.................................................. 23 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTACCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.........................................................................................AGTCTGTTGAGTGCCATA..................................................... 18 0 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTCGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCGATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAG................................................. 24 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGGGCCATAGA................................................... 22 1 7 0.14 1 0 0 0 1 0 0
.......................................................................................TAAGTCTTTTGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATG..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.........................................................................................AGTCTGTTGAGTGCCATAGA................................................... 20 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTCTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAAAAA................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TCAGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGATTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGCT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTGGAGTGCCATAGA................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTTAGTGCCATAGA................................................... 22 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................TAAGTCTGTCGAGTGCCATAGAA.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGGCTGTTGAGTGCCA....................................................... 18 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAAA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCCGTTGAATGCCATAG.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
...............................................................................CTAGTTCATAAGTCTGTTGAGTGCCA....................................................... 26 0 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTTGAGTGCCATAGAA.................................................. 22 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTTCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTATGTTGAGTGCCA....................................................... 18 1 7 0.14 1 0 0 1 0 0 0
............................................................................TTTCTAGTTCATAAGTCTGTTGAGTGC......................................................... 27 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTCCCATTGT................................................... 22 3 7 0.14 1 0 0 0 0 0 1
.......................................................................................TAAGTCTGTTGAGTGCCATAGATCCC............................................... 26 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAG................................................ 25 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAA............................................... 26 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGCTGAGTGCCATAGA................................................... 22 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGGCTGTTGAGTGCCATAGAA.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAAAA............................................. 28 3 7 0.14 1 1 0 0 0 0 0
..........................................................................................GTCTGTTGAGTGCCATAG.................................................... 18 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTACCATA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGAGCCATAA.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTA................................................... 22 2 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATCC................................................ 25 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCCG.................................................. 23 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTATTGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAGA................................................ 25 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAAT.............................................. 27 3 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTCGAGTGCCATAGA................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATCCT............................................... 26 3 7 0.14 1 1 0 0 0 0 0
...................................................................................TTCATAAGTCTGTTGAGTG.......................................................... 19 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCACAA.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGGGCCATGGA................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAGGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTAG................................................... 22 3 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTA.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAACTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAATCTGTTGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGATTGCCATCGA................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAC.................................................. 23 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAG................................................... 22 2 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTTAAGTGCCATAGA................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTT................................................. 24 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TACGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGACATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTAA................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAACTCTGTTGAGTGCCATAGAT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTCGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGATGAGTGCCATAGTT.................................................. 23 3 8 0.13 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCCT................................................... 22 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTTA.................................................... 21 3 8 0.13 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCT................................................... 22 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATGGTC.................................................. 23 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTC...................................................... 19 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGCTGAGTGCCATT..................................................... 20 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTTT.................................................... 21 3 11 0.09 1 1 0 0 0 0 0
.........................................................................................AAGTTGTTGAGTGCCATAG.................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CATTGGCACAACTCCTTTCACAAAGGGGGTGGTTTCCGTGTAAGCACGATATACCGTTTGTCAACTAAATATAATAAAAGATCAAGTATTCAGACAACTCACGGTATCTCGTTCTTCACACTACGTAGGAGTACATAGGAATCGTACCGAATCTAGTTCT
************************************.((((.(((.((((.(((((((..(((..(((((((((((.....))))..)))))))..)))..))))))).)))).)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
......................................................................................................GGTCTCCCGTTCGTCACACT...................................... 20 3 17 0.06 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_7193:395-554 + dpe_38 GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAAGGCACATTCGTGCTATATGGCAAACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGA
dp5 4_group4:3552522-3552681 + dps-mir-2511-1 GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAAGGCACATTCGTGCTATATGGCAAACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................TAAGTCTGTTGAGTGCCATAGA...................................................227237.431662838182451569
.......................................................................................TAAGTCTGTTGAGTGCCATAG....................................................217208.14145702421331415
.......................................................................................TAAGTCTGTTGAGTGCCATAGAA..................................................23719.1413401000133
.......................................................................................TAAGTCTGTTGAGTGCCATA.....................................................20715.291070505097
..................................................TATGGCAAACAGTTGATTTAT.........................................................................................21411.50460040042
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAA.................................................2478.14570000057
.......................................................................................TAAGTCTGTTGAGTGCCATAGT...................................................2274.86340000034
.......................................................................................TAAGTCTGTTGAGTGCCAT......................................................1974.00280402022
........................................................................................AAGTCTGTTGAGTGCCATAGA...................................................2173.14220100021
.......................................................................................TAAGTCTGTTGAGTGCCATT.....................................................2073.14220501016
.......................................................................................TAAGTCTGTTGAGTGCCA.......................................................1873.14220605011
.......................................................................................TAAGTCTGTTGAGTGCCATAA....................................................2173.14220001021
.......................................................................................TAAGTCTGTTGAGTGCCATAGAT..................................................2373.00210000021
.......................................................................................TAAGTCTGTTGAGTGCCATTT....................................................2171.86130300010
.......................................................................................TAAGTCTGTTGAGTGCCATAGAG..................................................2371.86130000013
.......................................................................................TAAGTCTGTTGAGTGCCATAGC...................................................2271.148010007
..................................................TATGGCAAACAGTTGATTTATT........................................................................................2241.004020002
.......................................................................................TAAGTCTGTTGAGTGCCATC.....................................................2071.007010006
.......................................................................................TAAGTCTGTTGAGTGCCATTC....................................................2171.007000007
.......................................................................................TAAGTCTGTTGAGTGCCATAGTT..................................................2370.715000005
.......................................................................................TAAGTCTGTTGAGTGCCATAGTC..................................................2370.715000005
.......................................................................................TAAGTCTGTTGAGTGCCATAGG...................................................2270.715300002
.......................................................................................TAAGTCTGTTGAGTGCCATTTT...................................................2280.635010103
.......................................................................................TAAGTCTGTTGAGTGCCATCCC...................................................2270.574000004
.......................................................................................TAAGTCTGTTGAGTGCCAA......................................................1970.574000004
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAT.................................................2470.574000004
.......................................................................................TAAGTCTGTTGAGTGCCATCT....................................................2170.574000004
.......................................................................................TAAGTCTGTTGAGTGCCATAT....................................................2170.574000004
.......................................................................................TAAGTCTGTTGAGTGCCATTCC...................................................2270.574000004
..................................................TATGGCAAACAGTTGATTT...........................................................................................1940.502000002
.......................................................................................TAAGTCTGTTGAGTGCCATATT...................................................2270.433000003
........................................................................................AAGTCTGTTGAGTGCCATAG....................................................2070.433010002
.......................................................................................TAAGTCTGTTGAGTGCCATCC....................................................2170.292000002
....................................................................................TCATAAGTCTGTTGAGTGCCATAGA...................................................2570.292000002
.......................................................................................TAAGTCTGTTGAGTGCCATTTC...................................................2270.292000002
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCT.................................................2470.292000002
.......................................................................................TAAGTCTGTTGAGTGCCATTCG...................................................2270.292000002
................................................TATATGGCAAACAGTTGATT............................................................................................2040.251000001
..................................................TATGGCAAACAGTTGATTTA..........................................................................................2040.251000001
..........................................................................................GTCTGTTGAGTGCCATAGA...................................................1970.141000001
..............................................................................TCTAGTTCATAAGTCTGTTGAGTGC.........................................................2570.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATCTT...................................................2270.141000001
.........................................................................................AGTCTGTTGAGTGCCATA.....................................................1870.141010000
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAG.................................................2470.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATG.....................................................2070.141000001
.........................................................................................AGTCTGTTGAGTGCCATAGA...................................................2070.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATAGCT..................................................2370.141000001
...............................................................................CTAGTTCATAAGTCTGTTGAGTGCCA.......................................................2670.141000001
........................................................................................AAGTCTGTTGAGTGCCATAGAA..................................................2270.141010000
............................................................................TTTCTAGTTCATAAGTCTGTTGAGTGC.........................................................2770.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAG................................................2570.141000001
..........................................................................................GTCTGTTGAGTGCCATAG....................................................1870.141000001
...................................................................................TTCATAAGTCTGTTGAGTG..........................................................1970.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATTAG...................................................2270.141010000
.......................................................................................TAAGTCTGTTGAGTGCCATTA....................................................2170.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATAGAC..................................................2370.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATAAG...................................................2270.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTT.................................................2470.141000001
.......................................................................................TAAGTCTGTTGAGTGCCATCCT...................................................2280.131000001
.......................................................................................TAAGTCTGTTGAGTGCCATTCT...................................................2280.131000001
.......................................................................................TAAGTCTGTTGAGTGCCTC......................................................1990.111000001
dp5
GTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................TAAGTCTGTTGAGTGCCATAGA...................................................2225788.50115772914518161532517151076921
.......................................................................................TAAGTCTGTTGAGTGCCATAG....................................................2121369.50273918004118388722346
..................................................TATGGCACACAGTTGATTTATA........................................................................................223141.0042301541000203911
.......................................................................................TAAGTCTGTTGAGTGCCATAGAA..................................................232136.502732500025512080
.......................................................................................TAAGTCTGTTGAGTGCCATA.....................................................202117.0023411201012401950
.......................................................................................TAAGTCTGTTGAGTGCCATAGTAA.................................................24275.50151000000001510
........................................................................................AAGTCTGTTGAGTGCCATAGA...................................................21265.001300160100160970
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAA.................................................24244.5089120001260590
.......................................................................................TAAGTCTGTTGAGTGCCATAGC...................................................22240.008000010030760
.......................................................................................TAAGTCTGTTGAGTGCCATAA....................................................21238.0076010001170561
.......................................................................................TAAGTCTGTTGAGTGCCATAGT...................................................22235.007002000080600
..................................................TATGGCACACAGTTGATTTAT.........................................................................................21330.67921130200130630
.......................................................................................TAAGTCTGTTGAGTGCCATT.....................................................20221.004202000010390
..................................................TATGGCACACAGTTGATTTATAA.......................................................................................23316.675002000000480
.......................................................................................TAAGTCTGTTGAGTGCCAT......................................................19216.503313000030260
.......................................................................................TAAGTCTGTTGAGTGCCATAGAT..................................................23213.502700000020250
.......................................................................................TAAGTCTGTTGAGTGCCATTT....................................................2139.002700000030240
.......................................................................................TAAGTCTGTTGAGTGCCA.......................................................1828.001600000040120
........................................................................................AAGTCTGTTGAGTGCCATAG....................................................2027.50150900001050
.......................................................................................TAAGTCTGTTGAGTGCCATAGAG..................................................2326.501301000010110
..................................................TATGGCACACAGTTGATTTA..........................................................................................2036.001801000000170
.......................................................................................TAAGTCTGTTGAGTGCCATAGTT..................................................2326.001200000020100
.......................................................................................TAAGTCTGTTGAGTGCCATAGATA.................................................2425.501100000000110
.......................................................................................TAAGTCTGTTGAGTGCCATAGCTG.................................................2424.5090000000090
.......................................................................................TAAGTCTGTTGAGTGCCATTA....................................................2124.5090000000090
.......................................................................................TAAGTCTGTTGAGTGCCATAGATT.................................................2433.671100000010100
.......................................................................................TAAGTCTGTTGAGTGCCATC.....................................................2023.5070000011050
.........................................................................................AGTCTGTTGAGTGCCATAGA...................................................2023.5070300001030
.......................................................................................TAAGTCTGTTGAGTGCCATAGTC..................................................2323.0060000003030
..............................................................................TCTAGTTCATAAGTCTGTTGAGTGC.........................................................2523.0060000000060
..................................................TATGGCACACAGTTGATTTATAAA......................................................................................2433.0090100000080
.......................................................................................TAAGTCTGTTGAGTGCCATAGG...................................................2223.0060100102020
.......................................................................................TAAGTCTGTTGAGTGCCATAGACTG................................................2523.0060000000060
.......................................................................................TAAGTCTGTTGAGTGCCATAT....................................................2133.0090000003060
.......................................................................................TAAGTCTGTTGAGTGCCATTTT...................................................2242.75110200000090
.......................................................................................TAAGTCTGTTGAGTGCCATTCT...................................................2222.5050200001020
.......................................................................................TAAGTCTGTTGAGTGCC........................................................1722.5050000000050
.........................................................................TATTTTCTAGTTCATAAGTCTGT................................................................2332.3370000000070
..................................................TATGGCACACAGTTGATTTATC........................................................................................2232.3370000001060
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTA.................................................2422.0040000001030
.........................................................................TATTTTCTAGTTCATAAGTCTGTTGAG............................................................2732.0060000000060
.......................................................................................TAAGTCTGTTGAGTGCCATAGCC..................................................2322.0040000000040
.......................................................................................TAAGTCTGTTGAGTGCCATAGATG.................................................2422.0040000000040
.......................................................................................TAAGTCTGTTGAGTGCCATAGAC..................................................2321.5030100001010
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCA.................................................2421.5030000001020
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAT.................................................2421.5030000001020
........................................................................................AAGTCTGTTGAGTGCCATAGAAA.................................................2321.5030100000020
........................................................................................AAGTCTGTTGAGTGCCATAGAA..................................................2221.5030000001020
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAG.................................................2421.5030000000030
.......................................................................................TAAGTCTGTTGAGTGCCATCCC...................................................2221.5030000000030
........................................................................................AAGTCTGTTGAGTGCCATA.....................................................1921.5030000000030
.............................................................................TTCTAGTTCATAAGTCTGTTGAGTGC.........................................................2621.5030000001020
................................................................................TAGTTCATAAGTCTGTTGAGTGC.........................................................2321.5030000000030
.......................................................................................TAAGTCTGTTGAGTGCCATATT...................................................2231.3340000000040
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTT.................................................2431.3340000000040
.......................................................................................TAAGTCTGTTGAGTGCCATCTG...................................................2231.0030000000030
..........................................................................................GTCTGTTGAGTGCCATAGA...................................................1921.0020000010010
...................................................ATGGCACACAGTTGATTTATAAAT.....................................................................................2431.0030000000030
......................................................................................ATAAGTCTGTTGAGTGCCATAG....................................................2221.0020000000020
............................................................................TTTCTAGTTCATAAGTCTGTTGA.............................................................2331.0030000000030
.......................................................................................TAAGTCTGTTGAGTGCCATAAT...................................................2221.0020000000020
.......................................................................................TAAGTCTGTTGAGTGCCATAGTA..................................................2321.0020000000020
............................................................................TTTCTAGTTCATAAGTCTGTTGAGTGC.........................................................2721.0020000000020
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAC................................................2521.0020000000020
.................................................ATATGGCACACAGTTGATTTATA........................................................................................2331.0030000000030
.......................................................................................TAAGTCTGTTGAGTGCCATAGACG.................................................2421.0020000000020
.......................................................................................TAAGTCTGTTGAGTGCCATAGAGA.................................................2421.0020000000020
....................................................................................TCATAAGTCTGTTGAGTGCCATA.....................................................2321.0020000000020
....................................................................................TCATAAGTCTGTTGAGTGCCATAG....................................................2421.0020000000020
..................................................TATGGCACACAGTTGATTT...........................................................................................1930.6720100001000
..................................................TATGGCACACAGTTGATTTATATTA.....................................................................................2530.6720000000020
..................................................TATGGCACACAGTTGATTTAA.........................................................................................2130.6720000000020
..................................................TATGGCACACAGTTGATTTATCA.......................................................................................2330.6720000000020
..................................................TATGGCACACAGTTGATT............................................................................................1830.6721000000010
.......................................................................................TAAGTCTGTTGAGTG..........................................................1530.6720000000020
.......................................................................................TAAGTCTGTTGAGTGCCATCT....................................................2130.6720000000020
..................................................TATGGCACACAGTTGATTTATATTATC...................................................................................2730.6720000000020
.................................................ATATGGCACACAGTTGATTTAT.........................................................................................2230.6720100001000
.........................................................................TATTTTCTAGTTCATAAGTCTGTA...............................................................2430.6720000000020
.......................................................................................TAAGTCTGTTGAGTGCCATCCT...................................................2220.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATAGCTA.................................................2420.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATAGAGT.................................................2420.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATCCG...................................................2220.5010000000010
................................................................................TAGTTCATAAGTCTGTTGAGTGCCA.......................................................2520.5010000000010
........................................................................................AAGTCTGTTGAGTGCCATAGG...................................................2120.5010100000000
.......................................................................................TAAGTCTGTTGAGTGCCATCC....................................................2120.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCG.................................................2420.5010000001000
.......................................................................................TAAGTCTGTTGAGTGCCATAGAGTCT...............................................2620.5010000000010
.............................................................................................TGTTGAGTGCCATAG....................................................1520.5010000000010
........................................................................................AAGTCTGTTGAGTGCCATAGTT..................................................2220.5010100000000
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCT.................................................2420.5010000000010
...............................................................................CTAGTTCATAAGTCTGTTGAGTGC.........................................................2420.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATG.....................................................2020.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATGA....................................................2120.5010000000010
...............................................................................CTAGTTCATAAGTCTGTTGAGTGCCA.......................................................2620.5010000000010
.......................................................................................TAAGTCTGTTGAGTGC.........................................................1620.5010000000010
.........................................................................................AGTCTGTTGAGTGCCATAGATA.................................................2220.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATAATA..................................................2320.5010000000010
............................................................................................CTGTTGAGTGCCATAG....................................................1620.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATAGCT..................................................2320.5010000000010
...........................................................................................TCTGTTGAGTGCCATAGA...................................................1820.5010000000010
.......................................................................................TAAGTCTGTTGAGTGCCATAC....................................................2120.5010000001000
.......................................................................................TAAGTCTGTTGAGTGCCATAGGA..................................................2320.5010000001000
......................................................................................ATAAGTCTGTTGAGTGCCATAGA...................................................2320.5010000000010
......................................................................................ATAAGTCTGTTGAGTGCCATAGAAA.................................................2520.5010000000010
..............................................................................TCTAGTTCATAAGTCTGTTGAGTGCC........................................................2620.5010000001000
....................................................TGGCACACAGTTGATTTATAA.......................................................................................2130.3310000000010
.............................................................................TTCTAGTTCATAAGTCTGTTG..............................................................2130.3310000000010
...................................................ATGGCACACAGTTGATTTATAT.......................................................................................2230.3310000000010
..................................................TATGGCACACAGTTGATTTATATTATTT..................................................................................2830.3310000000010
.......................................................................................TAAGTCTGTTGAGTGCCATATG...................................................2230.3310000000010
...................................................ATGGCACACAGTTGATTTATC........................................................................................2130.3310100000000
.................................................ATATGGCACACAGTTGATTTATATTAT....................................................................................2730.3310000000010

Generated: 05/15/2015 at 02:23 PM