dpe_360

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTCTACAAGGTGAGTGGCAGATCCATGATGGGGGACGGGGTTTTGATGGCACTTTCATTTTTGCGATTATTTATACAATTTTTTAATTAAACCTTAAACAATTTTTTTTCGTAATTACTCAATAGGGGGAGGGGGGGCGGGGTTTTTTTCCACGAACCCAAAAAACAAATTGAAAACAATCCTGGTATCTTGGGAAGATTTTTGGAGGGG ************************************************..(((((.(((((((.((........)))))))....)).)))))......((((((..........................................))))))...(((........))).(((..(((((......))).))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V111 male body	V057 head	V042 embryo
.....................GTTCTGGATTTTTCTCGGA...................................................................................................................................................................................................................	19	0	1	3.00	3	3	0	0	0
...........................GATTTTTCTCGGAGGTCTACA...........................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
.................ATTGGTTCTGGATTTTTCTC......................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0
....................GGTTCTGGATTTTTCTCGGG...................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0
....TGTCAAGGAGAAAATTGGTTCTGGATT............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
....................................................................................................................................................................AGTGGGAGGGGATGCGGGGTTT.................................................................	22	3	8	0.13	1	0	0	1	0
....................................................................................................................................................................AGGGGGGGGGGGTGCGGGGTT..................................................................	21	2	9	0.11	1	0	0	1	0
....................................................................................................................................................................................................................................TGTTGGGACGATTTTTTGAGG..	21	3	11	0.09	1	0	0	0	1
...................................................................................................................................................................TGGGGGGAGGGTGGGCGGGG....................................................................	20	2	20	0.05	1	0	0	1	0

TAAAACAGTTCCTCTTTTAACCAAGACCTAAAAAGAGCCTCCAGATGTTCCACTCACCGTCTAGGTACTACCCCCTGCCCCAAAACTACCGTGAAAGTAAAAACGCTAATAAATATGTTAAAAAATTAATTTGGAATTTGTTAAAAAAAAGCATTAATGAGTTATCCCCCTCCCCCCCGCCCCAAAAAAAGGTGCTTGGGTTTTTTGTTTAACTTTTGTTAGGACCATAGAACCCTTCTAAAAACCTCCCC ************************************************..(((((.(((((((.((........)))))))....)).)))))......((((((..........................................))))))...(((........))).(((..(((((......))).))..))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo
.................................................CCGCTCACCGTCCAGGTAC.......................................................................................................................................................................................	19	2	7	0.14	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_0:686542-686792 -	dpe_360	ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTCTACAAGGTGAGTGGCAGATCCATG-------------------------------------------------------------------ATGGGGGACGGG-GTTTTGATGGCACTTTCATTT-TT-----------------------------------------GCGATTATTTATACAATTTTTTAAT---TAAACCTTAAACAA--TTTTTTTTCGTAATTACTCAATAGGGG--------------GAG-----------------------------GGGGGGCGG----GGTTTTTTTCCACGAACCCAAA---AAAC-AAATTG-AAAACAAT--C-----CTGGTATCTTGGGAAGATTTTTGG--AGG-GG
dp5	2:6851039-6851295 -	dps_403	ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTTTACAAGGTGAGTGGCAGATCCAT------------------------CTGCACCATGGGGGTGCAGA---------------------------GGGGGCGGG-TTTTGGATGGCACTTTCATTT-TTG----------------------------------------GCGATTATTTACACAATTTTTTAAT---TAAACCTTAAACAA--TTTTATTTCGTAATTACTCAATAGGGG--------------GAG-----------------------------G--GGGCGG----GGTTTTTTCCAACGAACCCAAA---AAAC-A------------ATAGC-----CTGGGATCTTCGGGAGAGTTTGGG--GGG-GG
droWil2	scf2_1100000004943:2057463-2057669 +		ATTTTGTCAAGGAAAAAATTGGCTCTGGATTTTTCTCGGAGGTTTACAAGGTAAGTGAATTA--------GTTTAGTTACACTCATTTTCAT--------------------------------TTCTTCCAACAATGGAGCTTCATTAATTGAATGCCACTTTCGTTT-TCGAATTTGC------------------CGCAGCAATAACAATACTATTATTTACACAATT--TTAATTTTTAAACTTTACT--AGTTT----TTCGTAATTAC----------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12822:28080-28143 -		ATTTTGTCAAGGAAAAAATTGGTTCCGGGTTTTTCTCAGAAGTTTACAGGGTAAGTGGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:32683029-32683084 -		ACTTTGTTAAGGAAAAAATCGGTTCAGGGTTTTTCTCCGAAGTTTACAGGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15074:3707947-3708008 +		ATTTTGTCAAGGAGAAAATCGGTTCAGGTTTTTTCTCGGAGGTTTACCGGGTAAGTGGCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13340:17546361-17546419 -		ATTTCGTCAAGGAGAAGATTGGCTCGGGATTCTTCTCGGAGGTGTACAAGGTGAGTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396721:387789-388139 +		ATTTCGTCAAGGAGAAAATTGGCTCGGGATTTTTTTCGGAGGTGTACAAGGTGAGTGTGACTACA-----GCTTA---AGACTCGATATATTTTCCCCATGT-CATGCCGAGCTATTCATCGAGTAGTTCCCACAATAGAGCCTCAT-ATTTTGATGGCACTTTCATTT-TCGCAACGGCAGCAGTCA-CAATAGTAACAATGCCAAACCAATACGATTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TGAGTAATTACTCAATAGCTG--------------GGGCTCATCATTCATTATA-----GCCGCCCAGAGCCGCTG----AGT---------------------------AAATTGCAAAACAATGACCCAGACTCAGA-CCCGGCCAGATCCCAGACCCGG-CC
droKik1	scf7180000300058:178890-178945 +		ATTTTGTTAAGGAGAAAATCGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453812:123465-123601 +		CCACAATTGAGCATCAAAATTTAATGGCACTT-----------------------------------------------------------------------------------------------------------------------------------TCATTT-TCGCAAGAGTAACACCCGCCTGCGGTAACAAAGCCAAACAAATACGATTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TTTGTAATTACTCAATAGG--------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490994:669884-669940 -		ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTCTCAGAGGTCTACAAGGTAAGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777280:9595-9841 +		TTT------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCACTTTCATTT-TCGCAAGAGTAACACCCGCCAACGGTAACAAAGCCAAACAAATGCGTTTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TTTGTAATTACTCAATAGGTATTGTGGCGGTGGCTCGGCTCATCATTCATTATTATCATGCCGCCGCATCCCCCTGCCTGGG---------------CTAAAATTAAACAAAATTGCAAAACAATGGCCCAGAC-CAGA-CCAGACCTGACTCAAATCCAAGCCC
droBia1	scf7180000302402:667256-667316 -		ACTTCGTCAAGGAGAAAATCGGATCGGGATTTTTCTCGGAGGTTTACAAGGTGAGTGTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415256:408423-408559 -		CCACAATTGAGCATCATATTTTGATGGCACTT-----------------------------------------------------------------------------------------------------------------------------------TCATTT-TCGCAAGAGTAACACCCGCCAACGGTAACAAAGCCAAACAAATACGATTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TTTGTAATTACTCAATAGG--------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409804:1157290-1157353 -		ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGATAGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3R:14913036-14913176 -		ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCCGCACT--------------------------------------------------------------------TGAATAAGC-ATAAGAATCAATTCTTTAGTTTT-T----------------------------------------ACAATTGGTTTCATTTTTTTATTTT---TAAATCATTGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	3r:6344995-6345059 +		ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_77:25872-25936 +		ACTTCGTCAAGGAGAAAATTGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3R:3596972-3597098 -		ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGCGACAATTGCGCACA--------------------------------------------------------------------TGGGTAAAC-ATAAGAATCACTCTTTTAGTTTT-T----------------------------------------ACAATTTTTGGTTTCATTTTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4770:6717115-6717174 +		ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTCTACAAGGTGAGTGGCAGATCCATG-------------------------------------------------------------------ATGGGGGACGGG-GTTTTGATGGCACTTTCATTT-TT-----------------------------------------GCGATTATTTATACAATTTTTTAAT---TAAACCTTAAACAA--TTTTTTTTCGTAATTACTCAATAGGGG--------------GAG-----------------------------GGGGGGCGG----GGTTTTTTTCCACGAACCCAAA---AAAC-AAATTG-AAAACAAT--C-----CTGGTATCTTGGGAAGATTTTTGG--AGG-GG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................GTTCTGGATTTTTCTCGGA....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
...........................GATTTTTCTCGGAGGTCTACA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................ATTGGTTCTGGATTTTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................GGTTCTGGATTTTTCTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....TGTCAAGGAGAAAATTGGTTCTGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0

dp5

ATTTTGTCAAGGAGAAAATTGGTTCTGGATTTTTCTCGGAGGTTTACAAGGTGAGTGGCAGATCCAT------------------------CTGCACCATGGGGGTGCAGA---------------------------GGGGGCGGG-TTTTGGATGGCACTTTCATTT-TTG----------------------------------------GCGATTATTTACACAATTTTTTAAT---TAAACCTTAAACAA--TTTTATTTCGTAATTACTCAATAGGGG--------------GAG-----------------------------G--GGGCGG----GGTTTTTTCCAACGAACCCAAA---AAAC-A------------ATAGC-----CTGGGATCTTCGGGAGAGTTTGGG--GGG-GG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....GTCAAGGAGAAAATTGGTTCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........AAGGAGAAAATTGGTTCTGGATTTTTCC........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................GGTTCTGGATTTTTCTCGGAGGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................AATTGGTTCTGGATTTTTCT........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............AAATTGGTTCTGGATTTTTCT........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................GCACTTTCATTT-TTG----------------------------------------GCGATT.................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GAAAATTGGTTCTGGATTTTTCC........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droWil2

ATTTTGTCAAGGAAAAAATTGGCTCTGGATTTTTCTCGGAGGTTTACAAGGTAAGTGAATTA--------GTTTAGTTACACTCATTTTCAT--------------------------------TTCTTCCAACAATGGAGCTTCATTAATTGAATGCCACTTTCGTTT-TCGAATTTGC------------------CGCAGCAATAACAATACTATTATTTACACAATT--TTAATTTTTAAACTTTACT--AGTTT----TTCGTAATTAC----------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........AAGGAAAAAATTGGCTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
......................................GAGGTTTACAAGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.................ATTGGCTCTGGATTTTTCTCGGG....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
....................GGCTCTGGATTTTTCTCGGA....................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................ATTGGCTCTGGATTTTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...........................GATTTTTCTCGGAGGTTTACAAGGT........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
............AAAAAATTGGCTCTGGATTTTTCTCGGA....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
............................ATTTTTCTCGGAGGTTTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................ATTGGCTCTGGATTTTTCTCGGA....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0

droVir3

ATTTTGTCAAGGAAAAAATTGGTTCCGGGTTTTTCTCAGAAGTTTACAGGGTAAGTGGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.TTTTGTCAAGGAAAAAATTGGTTCCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	75.00	75	0	0	38	0	6	2	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	0	1	0	0	0	0	0	0	0	14	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0
...TTGTCAAGGAAAAAATTGGTTCCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	55.00	55	0	0	1	0	2	10	12	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	2	0	4	0	6	0	3	0	0	0	0	1	0	1	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.TTTTGTCAAGGAAAAAATTGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	50.00	50	0	0	3	2	10	4	2	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	14	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0
.TTTTGTCAAGGAAAAAATTGGTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	44.00	44	1	0	30	4	1	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.................................TCTCAGAAGTTTACAGGGTAAGTGG..................................................................................................................................................................................................................................................................................................................................................................................	25	1	31.00	31	0	0	13	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	1	0	0	1	0	0	0	0	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.TTTTGTCAAGGAAAAAATTGGTTCCGG................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	30.00	30	0	0	8	0	3	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	1	0	0	0	0	0	0	0	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTTTGTCAAGGAAAAAATTGGTTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	18.00	18	0	0	12	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTGTCAAGGAAAAAATTGGTTCCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	15.00	15	0	0	2	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	23	1	14.00	14	0	0	2	0	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
....TGTCAAGGAAAAAATTGGTTCCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	13.00	13	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	3	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAGTGGA.................................................................................................................................................................................................................................................................................................................................................................................	26	1	12.00	12	0	0	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................TCAGAAGTTTACAGGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	0	0	1	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...TTGTCAAGGAAAAAATTGGTTCCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	10.00	10	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAGTGGAG................................................................................................................................................................................................................................................................................................................................................................................	27	1	9.00	9	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	0	0	0	0	0	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTCAAGGAAAAAATTGGTTCCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGTTCCGG................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCAGAAGTTTACAGGGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCAGAAGTTTACAGGGTAAGTGGAGA...............................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTCTCAGAAGTTTACAGGGTAAGTGG..................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................TCAGAAGTTTACAGGGTAAGTGG..................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTTTCTCAGAAGTTTACAGGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTCAAGGAAAAAATTGGTTCCGG................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTGTCAAGGAAAAAATTGGTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCAGAAGTTTACAGGGTAAGTGGA.................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTTTTCTCAGAAGTTTACAGGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTCAAGGAAAAAATTGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCAGAAGTTTACAGGGTAAGTGGAG................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTTTGTCAAGGAAAAAATTGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCAGAAGTTTACAGGGTAAGTGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................TCAGAAGTTTACAGGGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTCTCAGAAGTTTACAGGGTAAGTGG..................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.TTTTGTCAAGGAAAAAATTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTCTCAGAAGTTTACAGGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTCTCAGAAGTTTACAGGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTCAGAAGTTTACAGGGTAAGTGGA.................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCAGAAGTTTACAGGGTAAGTGGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAGAAGTTTACAGGGTAAGTGGAG................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTCTCAGAAGTTTACAGGGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAGTGGAGA...............................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTTTCTCAGAAGTTTACAGGGTAAGTGG..................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GTCAAGGAAAAAATTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AAATTGGTTCCGGGTTTTTCTCA......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGTTCCGGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTTTCTCAGAAGTTTACAGGGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GTCAAGGAAAAAATTGGTTCCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTGTCAAGGAAAAAATTGGTTCCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..TTTGTCAAGGAAAAAATTGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTGGTTCCGGGTTTTTCTCAGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGTTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AAAAAATTGGTTCCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTCAAGGAAAAAATTGGTTCCGGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAGAAGTTTACAGGGTAAGTGGAGA...............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTCTCAGAAGTTTACAGGGTAAGTGGA.................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAGAAGTTTACAGGGTAAGTGGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	28	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGAAAAAATTGGTTCCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTCAGAAGTTTACAGGGTAAGTGGAGA...............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTGTCAAGGAAAAAATTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTTTGTCAAGGAAAAAATTGG......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTCTCAGAAGTTTACAGGGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTCAAGGAAAAAATTGGTTCCGGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGGAAAAAATTGGTTCCGGGTTTTTC.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCGGGTTTTTCTCAGAAGTC................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGT........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TTACAGGGTAAGTGGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAGGAAAAAATTGGTTCCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTCTCAGAAGTTTACAGGGT........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTCAAGGAAAAAATTGGTTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTTGTCAAGGAAAAAATTGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAGAAGTTTACAGGGTAAGTGGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTCAGAAGTTTACAGGGTAAGTGGAT................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AAGTTTACAGGGTAAGTGG..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAAAATTGGTTCCGGGTTTTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AAGGAAAAAATTGGTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTTTGTCAAGGAAAAAATTGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TTTACAGGGTAAGTGGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGGTTCCGGGTTTTTCTCAGAAGTT................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTTTGTCAAGGAAAAAATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTCAAGGAAAAAATTGGTTCCGGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACTTTGTTAAGGAAAAAATCGGTTCAGGGTTTTTCTCCGAAGTTTACAGGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................TTTTCTCCGAAGTTTACAGGGT........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

ATTTTGTCAAGGAGAAAATCGGTTCAGGTTTTTTCTCGGAGGTTTACCGGGTAAGTGGCGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

ATTTCGTCAAGGAGAAGATTGGCTCGGGATTCTTCTCGGAGGTGTACAAGGTGAGTGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................TCGGGATTCTTCTCGGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
...............AGATTGGCTCGGGATTCTTCTCGGAGGG.................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
................GATTGGCTCGGGATTCTTCTCGGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.............GAAGATTGGCTCGGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0

droBip1

ATTTCGTCAAGGAGAAAATTGGCTCGGGATTTTTTTCGGAGGTGTACAAGGTGAGTGTGACTACA-----GCTTA---AGACTCGATATATTTTCCCCATGT-CATGCCGAGCTATTCATCGAGTAGTTCCCACAATAGAGCCTCAT-ATTTTGATGGCACTTTCATTT-TCGCAACGGCAGCAGTCA-CAATAGTAACAATGCCAAACCAATACGATTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TGAGTAATTACTCAATAGCTG--------------GGGCTCATCATTCATTATA-----GCCGCCCAGAGCCGCTG----AGT---------------------------AAATTGCAAAACAATGACCCAGACTCAGA-CCCGGCCAGATCCCAGACCCGG-CC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTTTGTTAAGGAGAAAATCGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCACAATTGAGCATCAAAATTTAATGGCACTT-----------------------------------------------------------------------------------------------------------------------------------TCATTT-TCGCAAGAGTAACACCCGCCTGCGGTAACAAAGCCAAACAAATACGATTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TTTGTAATTACTCAATAGG--------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTCTCAGAGGTCTACAAGGTAAGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTT------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCACTTTCATTT-TCGCAAGAGTAACACCCGCCAACGGTAACAAAGCCAAACAAATGCGTTTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TTTGTAATTACTCAATAGGTATTGTGGCGGTGGCTCGGCTCATCATTCATTATTATCATGCCGCCGCATCCCCCTGCCTGGG---------------CTAAAATTAAACAAAATTGCAAAACAATGGCCCAGAC-CAGA-CCAGACCTGACTCAAATCCAAGCCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTTCGTCAAGGAGAAAATCGGATCGGGATTTTTCTCGGAGGTTTACAAGGTGAGTGTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCACAATTGAGCATCATATTTTGATGGCACTT-----------------------------------------------------------------------------------------------------------------------------------TCATTT-TCGCAAGAGTAACACCCGCCAACGGTAACAAAGCCAAACAAATACGATTATTTACACAATT--TTAAT---TAAACTTTAAA--A--TT----TTTGTAATTACTCAATAGG--------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGATAGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCCGCACT--------------------------------------------------------------------TGAATAAGC-ATAAGAATCAATTCTTTAGTTTT-T----------------------------------------ACAATTGGTTTCATTTTTTTATTTT---TAAATCATTGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................GATTCTTCTCGGAGGTTTAC.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AAATTGGATCGGGATTCTTCTCGGA....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
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...................TGGATCGGGATTCTTCTCGGAGGTTTA..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................AATTGGATCGGGATTCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GAAAATTGGATCGGGATTCT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............GAAAATTGGATCGGGATTC............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACTTCGTCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................TTGGATCGGGATTCTTCTCGGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATCGGGATTCTTCTCGGAGGTTTACAAGG.........................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
ACTTCGTCAAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ACTTCGTCAAGGAGAAAATTGGATCGGGCTTCTTCTCGGAGGTTTACAAGGTAAGTGACAATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............AAAATTGGATCGGGCTTCTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
................AATTGGATCGGGCTTCTTCTCGGAG...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
................AATTGGATCGGGCTTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..TTCGTCAAGGAGAAAATTGG......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.............GAAAATTGGATCGGGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................TCGGGCTTCTTCTCGGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.....GTCAAGGAGAAAATTGGATCGGGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
................AATTGGATCGGGCTTCTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGCGACAATTGCGCACA--------------------------------------------------------------------TGGGTAAAC-ATAAGAATCACTCTTTTAGTTTT-T----------------------------------------ACAATTTTTGGTTTCATTTTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................TTTTTCGGAGGTTTACAAGGT........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............AGAAAATTGGATCGGGATTT............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................AATTGGATCGGGATTTTTTTCGGA....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............GAAAATTGGATCGGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............GAAAATTGGATCGGGATTT............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................ATTGGATCGGGATTTTTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....GTCAAGGAGAAAATTGGATCGGG................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GAAAATTGGATCGGGATTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................GTTTACAAGGTAGGCGACAATTGCGC.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ACTTCGTCAAGGAGAAAATTGGATCGGGATTTTTTTCGGAGGTTTACAAGGTAGGTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............GAAAATTGGATCGGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..........GGAGAAAATTGGATCGGGATTTT...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0

dpe_360

scaffold_0:686592-686742 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads