ID:

dpe_357

Coordinate:

scaffold_0:1179491-1179688 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL23835-cds]; exon [dper_GLEANR_6168:15]; exon [dper_GLEANR_6168:14]; CDS [Dper\GL23835-cds]; intron [Dper\GL23835-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATGGAGCCAGAGGTGCAGGAAGCCCGCGATCTTTTCAGTGATTTTACATGTACGTATTCTCAGGGCAGCCTCTAGTTCCTCCTAGTGTTCCAATGTTCTCCGAATTGTGCATGTGTATACCCTCAGTCTCCCAGTCCCCAAGTCCCCTAGTCCCCTCGTCCCCTAGTCCACCAGTAGATAGATCTCTCTCTCAATTTGTAAATTGAAAGCTCAGTAGCAAGAATCAACATATTTTTCATCTTTTTAGCATCGTCTTCCTCATGCTCCGAGGCACAGTTCGAGATGCTAATGCCGACA
**************************************************(((((.((((..((((((((..((((......)))).)).....))))))..)))))))))((((((.........................((...((((............))))...))....(((.((....)).)))...(((((..(((((....))))).))))).....))))))...............**************************************************
Read size # Mismatch Hit Count Total Norm Total M021
embryo
V042
embryo
V057
head
.....................................................................................................................................................................................................................................................CATCATCGTCTTCCTCATGCTCCGA............................ 25 2 1 2.00 2 2 0 0
.....................AGCCCGCGATCTTTTCAGT.................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0
CATGGAGCCGGACGTGCA........................................................................................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 1

Anti-sense strand reads

GTACCTCGGTCTCCACGTCCTTCGGGCGCTAGAAAAGTCACTAAAATGTACATGCATAAGAGTCCCGTCGGAGATCAAGGAGGATCACAAGGTTACAAGAGGCTTAACACGTACACATATGGGAGTCAGAGGGTCAGGGGTTCAGGGGATCAGGGGAGCAGGGGATCAGGTGGTCATCTATCTAGAGAGAGAGTTAAACATTTAACTTTCGAGTCATCGTTCTTAGTTGTATAAAAAGTAGAAAAATCGTAGCAGAAGGAGTACGAGGCTCCGTGTCAAGCTCTACGATTACGGCTGT
**************************************************(((((.((((..((((((((..((((......)))).)).....))))))..)))))))))((((((.........................((...((((............))))...))....(((.((....)).)))...(((((..(((((....))))).))))).....))))))...............**************************************************
Read size # Mismatch Hit Count Total Norm Total V057
head
V050
head
V111
male body
M042
female body
.......................................................................................................................TGGGTGTCAGAGGGTCAATGGT............................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0
........................................................................................................................CGGCGTCAGAGGGTCAGGGGT............................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0
................GTCTTTCGGGTGCTAGAAAAG..................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0
..............................................................................................................................................CAGGTGATTAGGAGAGCAG......................................................................................................................................... 19 3 15 0.33 5 0 0 5 0
.......................................................CTACGAGTCCCGACGGAGAT............................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0
..........................................................................................................................................................GGTGCTGGGGATCAGGGGGTC........................................................................................................................... 21 3 6 0.17 1 0 0 1 0
..............................................................................................................................................CAGGTGATTAGGGAAGCAG......................................................................................................................................... 19 3 18 0.11 2 0 0 1 1
..................................................................................................................................GCGGCAGGGGTTCAGGCGAT.................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:1179441-1179738 + dpe_357 CATGGA---GCCAGAGGTGCAGGAAGCCCGCGATCTTTTCAGTGATTTTACATGTACGTATT-----CTCAGGG----------CAGCCTCTAGTTCCTCCTAGTGTTCCAATGTTCTCC-GA------------------------------------------------------------------------------ATTGT--------------------GCATGTGTATACCCTCAGTCTC---------------------CCAGTCCC-----------------CAAGTCCCCTAGTCCCCTCGTCCCCTAGTCCACCAGTAGATA-----GATCTCTCTCTC------------------------AATTTGTAAATTGAAAGCTCAGTAGCA-------------------------------------------------AGAATCA-----ACATATTTTTCATCTTTTTAGCATCGTCTTC---------------CTC---ATGCTCCGAGGCACA---GTTCGAGATGCTAATGCCGACA
dp5 2:7316448-7316745 + dps_411 CATGGA---GCCAGAGGTGCAGGAAGCCCGCGATCTTTTCAGTGATTTTACATGTACGTATT-----CTCAGGG----------CAGCCTCTAGTTCCTCCTAGTGTTCCAATGTTCTCC-GA------------------------------------------------------------------------------ATTGT--------------------GCATGTGTATACCCTCAGTCTC---------------------CCAGTCCC-----------------CCAGTCTCCTAGTCCCGTCGTCCCCTAGTCCCCCAGTAGATA-----GATCTCTCTCTC------------------------AATTTGTAAATTGAAAGCTCAGTAGCA-------------------------------------------------AGAATCA-----ACATATTTTTCATCTTTTTAGCATCGTCTTC---------------CTC---ATGCTCCGAGGCACA---GTTCGAGATGCTAATGCCGACA
droWil2 scf2_1100000004943:14958181-14958459 + TATGGA---GGCTGCAGTGCAGGAGACGCGTGAACTTTTTGGCGACTATTCATGTGAGTATT-----TTAAGAG----------TA--------------------TGTGTA--TGTGTGTGTGAGTTGTGAGCAGGG--CTCAGTTCAAAATTATAAGGATATTTAATTGGGATGTATTTTA--------------------------------------------------------CTGT---------------------------------------------------------------------TTAC-------------------------------GGACT---------------CCTCGCTATG-GT------------------------TTGA----------------------------------------ATTGAATTGCGAGTGTAACATATTTCTCATCTTTTTAGCCTCTTCCTCCAACTCTTCTTCCTCCTCATCTGCTTCCGTGGCACAGCAGTCTGTGCTCTGTATGCCGACA
droVir3 scaffold_13047:998242-998310 + AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTCTCATTTTTTTAGCATC---CTT---------------CTC---TTCCTCCGTCGCACA---GGCTGTGCTACATATGCCGACA
droMoj3 scaffold_6540:5003522-5003580 + TGTGAC---GACAGCAGTGCATGAGACTCGTGATCTTTTCAATGACTATACTTGTGAGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:5290307-5290438 - CATAGCCACAACAACAATGCAGGAGAGTCGCGACATCTTCAGTGACTACGCATGTAAGTAAT-----TTAAAAA----------A-----------------------------------------------------------------------------------TTAAGATATATTCTA----------------------------------------------------------------------------------------------------------TTCATTCC-----GTTCTGATTCGTTTGAC----TTGTGCATAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---------ATCCTCA
droAna3 scaffold_13340:885549-885845 - CATGGA---GGCAGCTGTGCAGGACACGCGGGATCTGTTCAGCGATTACACGTGTAAGTATT-----TGG--GG----------CAT----------------------------------------------------------------------------------TCAGGAAGGTTTTCACAGTAGGACACGGCAGATAAATGCATGT-AACCGATTGTTTTCAAAATAACTA--ATGTGAGCG--CAATGTTCC-----------------G----------------------------------------------------------------------GGACAACGCACTGTC----------------GC------------------------ACGAAATTCCATTTTTATTGATGTTTGATTTAATCAAATGAACAAGAACAAAAGAA-----ATGAACTTTCCACTCTTTTAGCAACTGCTTC---------------CTC---GTGCTCCGAGGCACA---ATTTGAGATGCTGATGCCGACA
droBip1 scf7180000394085:110961-111241 + CATGGA---GGCAGCCGTGCAGGAGACCCGAGATCTATTCAGCGACTATACGTGTAAGTATT-----TGG--------------GGA-TCATAGGGA---------CTTC-------------------------------------------------------------------------ACAATAGGAAACGGCAGAAAAGTGCATGTGAACAGATTTTTATTGAAATATCGA--ATGT---------------------------------------------------------------------GTCC-------------------------------GGACGACACATGGTC-------------------------------------------GGAATTGCCTCTAATATTGATATTTGATTTAATCAAATGAAAAAGAAGAAAAGAA-----ATGAACTTTCCATTCTTTTAGCAACTGCTTC---------------CTC---GTGCTCCGAGGCACA---ATTTGAGATGCTGATGCCGACA
droKik1 scf7180000302810:298270-298334 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCGTTCTTTTAGCAACTGCTTC---------------CTC---ATGCTCCGAGGCACA---ATTTGAGATGCTGATGCCGACA
droFic1 scf7180000453800:2234026-2234320 - CATGGA---AGCCGCAGTGCAGGAGACACGAGATCTATTCAGCGACTATGCTTGTAAGTACT-----TTC--------------------TT----ACAATAGATGTT------TTTTTGTAAATTT--TT---------------------------------------------------------------------------------------------------ATAACTATGGTATGTGCG--AATTTACATAAACGACAT--T---TTGTAAAA---ACCATTTGCACA----AGTATAAGTT-----------------AATAGATTTTGTACTCTCTTGCCGGAGCCTTGTGT--TCCGTACCAAAGAAA------------------------TTGT----------------------------------------GAAACAAATTCA-----ACGAATTTTCCATTCTTTTAGCAACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACA
droEle1 scf7180000491080:76835-77179 + CATGGA---AGCAGCAGTGCAGGAGACACGAGATCTTTTCAGCGACTATACTTGTAAGTATG-----GATTATGATTTGAGAAGTTT-ATTTAGT-AAGCGAAATGCTTATATATTTTTGCAAATTA--T-AAAATCCT--------------------------------------------------------------------------------------------TCAATGTGATATGTGCAAAAAAAAGTGTGTGCAACAAATA-AGTGTTA-AA---AACATTTGCACA----GGTAT-CTTTTCTTCGGA----TTGCCCGTAGATCCT-CAATCCCCTGCCCAGACATAGTGTT-TCCCTAA-CAAGAAA------------------------TTGT----------------------------------------GACCCGATTTCA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACA
droRho1 scf7180000768822:50742-51053 + CATGGA---AGCAACAGTGCAGGAAACACGAGATCTATTCAGCGACTATACTTGTAAGTATC-----TAATATGAATTTATAAGTTT-GTTTAAT-AAGCGAAATGCTTAAATATTTATGCAAA------------------------------------------------------------------------------------------------------------------------------AAAAAATGTGCACAACAAATT---CTGTG-AA---AATATTTGCACA----GGTATT-ATTTCTTCGGA----TTGTCCGTAGATAAT-TAATCCCTTGCCCACCAATAGTGTC-TTCTTAACCAGA-AA------------------------TTGT----------------------------------------GAAACAATTTCA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACA
droBia1 scf7180000302402:8238293-8238587 - CATGGA---AGCTTCAGTGCAGGAAACTAGAGATTTATTCAGCGACTATACCTGTAAGTAGACCACTTTCAAGG--------TTTCT-GTTTACC-TAGCAAAACGTTTATATATTTATGCAAATTA--TTGAAATTGATT-----TCAAT----------------------------------------------------------------------ACTTTA----------------------------------------AATT---TCACA-AAAATAGCATTTGCAAA----GGTATTCTTTTCTACGGC----GAGACCGTAGTTGCG-AAATCCCTTGGCAGGGCATAGTCA---------------------------------------------------------------------------------------------AACA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACA
droTak1 scf7180000415811:18174-18250 + GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTCGAGATGCTGATGCCGACA
droEug1 scf7180000409881:509481-509553 + C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGTACA---ATTTGAGATGCTGATGCCGACA
dm3 chr3R:6146899-6147236 - AATGGA---AGCTGCGATCCAGGAAACACGGGATCTTTTCAGCGACTATACTTGTAAGTACC-------------------AAGCTT-CCTTAGTTAAGCTAAATGCTTCAATATTTATG-AAATGG--TCAAAATCGATT--------------------------------------------------------------------------------ATTTTATAAATGAATACGATACGTGTG--AAAAGTTGTGCTCAATATATT-GTCCACA-AA---AACATTTGCAGA----GGTATTCATTTCTTCGGA----TTGCCGGTAGATA-----TTTTTTTCCCCGGACATTGTTT--TTCCTTATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATACTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACA
droSim2 3r:14919278-14919586 + AATGGA---AGCTGCTATCCAGGAAACACGGGATCTTTTCAGCGACTATACTTGTAAGTACC-------------------AAGCTT-CCTTAGTTAATCTAAATGCTTCTATATTTATG-AAATGA--TCAAAATCGATT--------------------------------------------------------------------------------ATTTTATATATGAATACGATACGTGTG---------------------------------A---AACATTTGCAGA----GGTATTCATTTCTTCGGC----TTGCCCGTAGATA-----ATTCTTTCCCCGGACATTGTTT--ACCCTAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATACTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACA
droSec2 scaffold_0:15784979-15785287 + AATGGA---AGCTGCTATCCAGGAAACACGGGATCTTTTCAGCGACTATACCTGTAAGTACC-------------------AAGCTT-CCTTAGTTAATCTAAATGCTTCTATATTTATG-AAATGA--TCAAAATCGATT--------------------------------------------------------------------------------ATTTTATATATGAATACGATACGTGTG---------------------------------A---AACATTTGCAGA----GGTATTCATTTCTTCGGC----TTGCCCGTAGATA-----ATTCTTTCCCCGGACATTGTTT--ACCCTAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATACTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACA
droYak3 3R:10183321-10183664 - CATGGA---AGCTGCTGTGCAAGAAACACGAGATCTTTTCAGCGACTACACTTGTAAGTGAT-----TACC----------AAGCTT-ATGTAGTTAGCCTAAAGGCTTTTATATTTATGCAAATAA--TCAAAAGCGTTC--------------------------------------------------------------------------------AT-TGATAAATGAATACGATACGTGTG--AAAAGTTGAGCACAATATGGT-ACCCACA-AA---AACATTTGCAGA----GGTATTCATTTCTTCGGC----TTGTCCGTAGATA-----ATTCTTACCACGGACATTGTGTGTACCCTAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACA
droEre2 scaffold_4770:15459483-15459825 + CATGGA---AGCTGCGGTGCAAGAAACACGAGATATTTTCAGCGACTATACTTGTAAGTAAT-----GACC----------AAGCTT-CCTTAGTTAAGCTAATTGCATTTATATTAATGCAAATAG--TCTAAAGCGATT--------------------------------------------------------------------------------ATTTTATAAATGAATACGATACGTGTG--AAAAGTTGTGCACAATATATT-ACCCACA-AA---AACATTTGCTGT----GGTATTCATTTCTTCGGC----TTGTCCGTAGATA-----ATTCTTACGACGGACATTGTGC--ACCATAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATTCTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CATGGA---GCCAGAGGTGCAGGAAGCCCGCGATCTTTTCAGTGATTTTACATGTACGTATT-----CTCAGGG----------CAGCCTCTAGTTCCTCCTAGTGTTCCAATGTTCTCC-GA------------------------------------------------------------------------------ATTGT--------------------GCATGTGTATACCCTCAGTCTC---------------------CCAGTCCC-----------------CAAGTCCCCTAGTCCCCTCGTCCCCTAGTCCACCAGTAGATA-----GATCTCTCTCTC------------------------AATTTGTAAATTGAAAGCTCAGTAGCA-------------------------------------------------AGAATCA-----ACATATTTTTCATCTTTTTAGCATCGTCTTC---------------CTC---ATGCTCCGAGGCACA---GTTCGAGATGCTAATGCCGACASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
........................AGCCCGCGATCTTTTCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
dp5
CATGGA---GCCAGAGGTGCAGGAAGCCCGCGATCTTTTCAGTGATTTTACATGTACGTATT-----CTCAGGG----------CAGCCTCTAGTTCCTCCTAGTGTTCCAATGTTCTCC-GA------------------------------------------------------------------------------ATTGT--------------------GCATGTGTATACCCTCAGTCTC---------------------CCAGTCCC-----------------CCAGTCTCCTAGTCCCGTCGTCCCCTAGTCCCCCAGTAGATA-----GATCTCTCTCTC------------------------AATTTGTAAATTGAAAGCTCAGTAGCA-------------------------------------------------AGAATCA-----ACATATTTTTCATCTTTTTAGCATCGTCTTC---------------CTC---ATGCTCCGAGGCACA---GTTCGAGATGCTAATGCCGACASizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
.....A---GCCAGAGGTGCAGGAAGCCCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................TTGTAAATTGAAAGCTCAGTAGC..........................................................................................................................................................2311.0010010000000
droWil2
TATGGA---GGCTGCAGTGCAGGAGACGCGTGAACTTTTTGGCGACTATTCATGTGAGTATT-----TTAAGAG----------TA--------------------TGTGTA--TGTGTGTGTGAGTTGTGAGCAGGG--CTCAGTTCAAAATTATAAGGATATTTAATTGGGATGTATTTTA--------------------------------------------------------CTGT---------------------------------------------------------------------TTAC-------------------------------GGACT---------------CCTCGCTATG-GT------------------------TTGA----------------------------------------ATTGAATTGCGAGTGTAACATATTTCTCATCTTTTTAGCCTCTTCCTCCAACTCTTCTTCCTCCTCATCTGCTTCCGTGGCACAGCAGTCTGTGCTCTGTATGCCGACASizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
.........GGCTGCAGTGCAGGAGACGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.ATGGA---GGCTGCAGTGCAGGAGACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.ATGGA---GGCTGCAGTGCAGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTGTGCTCTGTATGC.....1911.00100010
.........GGCTGCAGTGCAGGAGACGCGTGAACTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100100
.ATGGA---GGCTGCAGTGCAGGAGACGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTCTGTGCTCTGTA........1911.00110000
droVir3
AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTCTCATTTTTTTAGCATC---CTT---------------CTC---TTCCTCCGTCGCACA---GGCTGTGCTACATATGCCGACASizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT---------------CTC---TTCCTCCGTCGCACA---GGCT..................2511.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC---TTCCTCCGTCGCACA---GGCTGTGC..............2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGTGAC---GACAGCAGTGCATGAGACTCGTGATCTTTTCAATGACTATACTTGTGAGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
No Reads
droGri2
CATAGCCACAACAACAATGCAGGAGAGTCGCGACATCTTCAGTGACTACGCATGTAAGTAAT-----TTAAAAA----------A-----------------------------------------------------------------------------------TTAAGATATATTCTA----------------------------------------------------------------------------------------------------------TTCATTCC-----GTTCTGATTCGTTTGAC----TTGTGCATAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---------ATCCTCASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads
droAna3
CATGGA---GGCAGCTGTGCAGGACACGCGGGATCTGTTCAGCGATTACACGTGTAAGTATT-----TGG--GG----------CAT----------------------------------------------------------------------------------TCAGGAAGGTTTTCACAGTAGGACACGGCAGATAAATGCATGT-AACCGATTGTTTTCAAAATAACTA--ATGTGAGCG--CAATGTTCC-----------------G----------------------------------------------------------------------GGACAACGCACTGTC----------------GC------------------------ACGAAATTCCATTTTTATTGATGTTTGATTTAATCAAATGAACAAGAACAAAAGAA-----ATGAACTTTCCACTCTTTTAGCAACTGCTTC---------------CTC---GTGCTCCGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
....GA---GGCAGCTGTGCAGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........GGCAGCTGTGCAGGACACGCGGGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droBip1
CATGGA---GGCAGCCGTGCAGGAGACCCGAGATCTATTCAGCGACTATACGTGTAAGTATT-----TGG--------------GGA-TCATAGGGA---------CTTC-------------------------------------------------------------------------ACAATAGGAAACGGCAGAAAAGTGCATGTGAACAGATTTTTATTGAAATATCGA--ATGT---------------------------------------------------------------------GTCC-------------------------------GGACGACACATGGTC-------------------------------------------GGAATTGCCTCTAATATTGATATTTGATTTAATCAAATGAAAAAGAAGAAAAGAA-----ATGAACTTTCCATTCTTTTAGCAACTGCTTC---------------CTC---GTGCTCCGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCGTTCTTTTAGCAACTGCTTC---------------CTC---ATGCTCCGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droFic1
CATGGA---AGCCGCAGTGCAGGAGACACGAGATCTATTCAGCGACTATGCTTGTAAGTACT-----TTC--------------------TT----ACAATAGATGTT------TTTTTGTAAATTT--TT---------------------------------------------------------------------------------------------------ATAACTATGGTATGTGCG--AATTTACATAAACGACAT--T---TTGTAAAA---ACCATTTGCACA----AGTATAAGTT-----------------AATAGATTTTGTACTCTCTTGCCGGAGCCTTGTGT--TCCGTACCAAAGAAA------------------------TTGT----------------------------------------GAAACAAATTCA-----ACGAATTTTCCATTCTTTTAGCAACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droEle1
CATGGA---AGCAGCAGTGCAGGAGACACGAGATCTTTTCAGCGACTATACTTGTAAGTATG-----GATTATGATTTGAGAAGTTT-ATTTAGT-AAGCGAAATGCTTATATATTTTTGCAAATTA--T-AAAATCCT--------------------------------------------------------------------------------------------TCAATGTGATATGTGCAAAAAAAAGTGTGTGCAACAAATA-AGTGTTA-AA---AACATTTGCACA----GGTAT-CTTTTCTTCGGA----TTGCCCGTAGATCCT-CAATCCCCTGCCCAGACATAGTGTT-TCCCTAA-CAAGAAA------------------------TTGT----------------------------------------GACCCGATTTCA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droRho1
CATGGA---AGCAACAGTGCAGGAAACACGAGATCTATTCAGCGACTATACTTGTAAGTATC-----TAATATGAATTTATAAGTTT-GTTTAAT-AAGCGAAATGCTTAAATATTTATGCAAA------------------------------------------------------------------------------------------------------------------------------AAAAAATGTGCACAACAAATT---CTGTG-AA---AATATTTGCACA----GGTATT-ATTTCTTCGGA----TTGTCCGTAGATAAT-TAATCCCTTGCCCACCAATAGTGTC-TTCTTAACCAGA-AA------------------------TTGT----------------------------------------GAAACAATTTCA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droBia1
CATGGA---AGCTTCAGTGCAGGAAACTAGAGATTTATTCAGCGACTATACCTGTAAGTAGACCACTTTCAAGG--------TTTCT-GTTTACC-TAGCAAAACGTTTATATATTTATGCAAATTA--TTGAAATTGATT-----TCAAT----------------------------------------------------------------------ACTTTA----------------------------------------AATT---TCACA-AAAATAGCATTTGCAAA----GGTATTCTTTTCTACGGC----GAGACCGTAGTTGCG-AAATCCCTTGGCAGGGCATAGTCA---------------------------------------------------------------------------------------------AACA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droTak1
GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGCACA---ATTCGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
droEug1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGCACTGAGGTACA---ATTTGAGATGCTGATGCCGACASizeHit CountTotal NormTotal
No Reads
dm3
AATGGA---AGCTGCGATCCAGGAAACACGGGATCTTTTCAGCGACTATACTTGTAAGTACC-------------------AAGCTT-CCTTAGTTAAGCTAAATGCTTCAATATTTATG-AAATGG--TCAAAATCGATT--------------------------------------------------------------------------------ATTTTATAAATGAATACGATACGTGTG--AAAAGTTGTGCTCAATATATT-GTCCACA-AA---AACATTTGCAGA----GGTATTCATTTCTTCGGA----TTGCCGGTAGATA-----TTTTTTTCCCCGGACATTGTTT--TTCCTTATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATACTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
..........................................................................................................................................................................................................................................ATACGATACGTGTG--AAAAGTG............................................................................................................................................................................................................................................................................................................21224.00480000000000000000000000010000000000000000000000000000000000000000000000000000010100000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000100100000000000000000002000000000000000000000001001000000300130010100100000001203010000010002200101100100010510210
.............................................................................................................CAATATTTATG-AAATGG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
........................................................................................................................................................................................................................................................................................................A----GGTATTCATTTCTTCGGA----TT........................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TACGATACGTGTG--AAAAGTG............................................................................................................................................................................................................................................................................................................2022.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000000000
............TGCGATCCAGGAAACACGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTTC---------------CTC---GTGTACTGAGGCA...........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATGGA---AGCTGCGATCCAGGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTTC---------------CTC---GTGTACTGA...............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGGAAACACGGGATCTTTTCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............GATCCAGGAAACACGGGATCTTTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGACGCTGATGCCGACA2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATACGATACGTGTG--AAAAGTT............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------------CTC---GTGTACTGAGGCACT---ATTTGA................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........GCTGCGATCCAGGAAACACGGGATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACGGGATCTTTTCAGCGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................TCCAGGAAACACGGGATCTTTTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCTGCGATCCAGGAAACACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGAGGCACT---ATTTGAGACGCT..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATGGA---AGCTGCGATCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATACGATACGTGTG--AAAAG..............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGA---AGCTGCGATCCAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..............................GGATCTTTTCAGCGACTATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GATCCAGGAAACACGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAACACGGGATCTTTTCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCTGCGATCCAGGAAACACGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................GGGATCTTTTCAGCGACTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA-----ATGAATTTTTCATACTTTTAGC......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGAAACACGGGATCTTTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATGGA---AGCTGCGATCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGACGCTGATGCCGA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTGAGGCACT---ATTTGAGACGCT..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................CGATACGTGTG--AAAAGTTGTGCTC......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GAAACACGGGATCTTTTCAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CACGGGATCTTTTCAGCGACTATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAACACGGGATCTTTTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................ACGATACGTGTG--AAAAGTTGTGCTC......................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................TTTTCAGCGACTATACTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGGAAACACGGGATCTTTTCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGGGATCTTTTCAGCGACTATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTC---------------CTC---GTGTACTGAGG.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTTTTTTCCCCGGACATTGTTT--TT..............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GTGTACTGAGGCACT---ATTTGAG...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----A...........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTTC---------------CTC---GTGTACTGAGGCACT---......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CACGGGATCTTTTCAGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACACGGGATCTTTTCAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CACGGGATCTTTTCAGCGACTATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GGGATCTTTTCAGCGACTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AATGGA---AGCTGCTATCCAGGAAACACGGGATCTTTTCAGCGACTATACTTGTAAGTACC-------------------AAGCTT-CCTTAGTTAATCTAAATGCTTCTATATTTATG-AAATGA--TCAAAATCGATT--------------------------------------------------------------------------------ATTTTATATATGAATACGATACGTGTG---------------------------------A---AACATTTGCAGA----GGTATTCATTTCTTCGGC----TTGCCCGTAGATA-----ATTCTTTCCCCGGACATTGTTT--ACCCTAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATACTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................CGGC----TTGCCCGTAGATA-----A.......................................................................................................................................................................................................................1812.00200002000000000000
....................................TTTCAGCGACTATACTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
...................................TTTTCAGCGACTATACTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................GATA-----ATTCTTTCCCCGGACATTGTT...................................................................................................................................................................................................2511.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACT---ATTTGAGACGCTGATGCC....2211.00100100000000000000
..................................CTTTTCAGCGACTATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACT---ATTTGAGACGCTGATGCCGAC.2711.00100100000000000000
droSec2
AATGGA---AGCTGCTATCCAGGAAACACGGGATCTTTTCAGCGACTATACCTGTAAGTACC-------------------AAGCTT-CCTTAGTTAATCTAAATGCTTCTATATTTATG-AAATGA--TCAAAATCGATT--------------------------------------------------------------------------------ATTTTATATATGAATACGATACGTGTG---------------------------------A---AACATTTGCAGA----GGTATTCATTTCTTCGGC----TTGCCCGTAGATA-----ATTCTTTCCCCGGACATTGTTT--ACCCTAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATACTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
...................................................................................................................................................................................................................................................................................................................CATTTCTTCGGC----TTGCCCGTA.................................................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................................................................................GTG---------------------------------A---AACATTTGCAGA----GGT.............................................................................................................................................................................................................................................................1911.0010010
droYak3
CATGGA---AGCTGCTGTGCAAGAAACACGAGATCTTTTCAGCGACTACACTTGTAAGTGAT-----TACC----------AAGCTT-ATGTAGTTAGCCTAAAGGCTTTTATATTTATGCAAATAA--TCAAAAGCGTTC--------------------------------------------------------------------------------AT-TGATAAATGAATACGATACGTGTG--AAAAGTTGAGCACAATATGGT-ACCCACA-AA---AACATTTGCAGA----GGTATTCATTTCTTCGGC----TTGTCCGTAGATA-----ATTCTTACCACGGACATTGTGTGTACCCTAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTCCATTCTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
............................CGAGATCTTTTCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000
...........................ACGAGATCTTTTCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000
................GTGCAAGAAACACGAGATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................ATTTGCAGA----GGTATTCATTTCTTC.................................................................................................................................................................................................................................................2411.00100100000000
...GGA---AGCTGCTGTGCAAGAAACACGAGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTTC---------------CTC---GTGTACTGAGG.............................2211.00100000010000
.....A---AGCTGCTGTGCAAGAAACACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................CAAAAGCGTTC--------------------------------------------------------------------------------AT-TGATAAATGA...................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC---------------CTC---GTGTACTGAGGCACT---......................2211.00100000100000
..................................CTTTTCAGCGACTACACTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
........................AACACGAGATCTTTTCAGCGACTACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.ATGGA---AGCTGCTGTGCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........................AACACGAGATCTTTTCAGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................AACACGAGATCTTTTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.....................AGAAACACGAGATCTTTTCAGCGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAGGCACT---ATTTGAGACGCT..........2511.00100000010000
droEre2
CATGGA---AGCTGCGGTGCAAGAAACACGAGATATTTTCAGCGACTATACTTGTAAGTAAT-----GACC----------AAGCTT-CCTTAGTTAAGCTAATTGCATTTATATTAATGCAAATAG--TCTAAAGCGATT--------------------------------------------------------------------------------ATTTTATAAATGAATACGATACGTGTG--AAAAGTTGTGCACAATATATT-ACCCACA-AA---AACATTTGCTGT----GGTATTCATTTCTTCGGC----TTGTCCGTAGATA-----ATTCTTACGACGGACATTGTGC--ACCATAATCAAG-AG------------------------TTGT----------------------------------------AAAGAATTTCCA-----ATGAATTTTTCATTCTTTTAGCCACTGCTTC---------------CTC---GTGTACTGAGGCACT---ATTTGAGACGCTGATGCCGACASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
..................GCAAGAAACACGAGATATTTTCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................................................................................................................GATACGTGTG--AAAAGTTGTGCACA.....................................................................................................................................................................................................................................................................................................2411.0010000010
.......................AAACACGAGATATTTTCAGCGACTATACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000100
CATGGA---AGCTGCGGTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010

Generated: 06/08/2015 at 02:34 PM