ID:

dpe_354

 Coordinate:

scaffold_0:520304-520454 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.0 -13.0

Flybase annnotation

exon [dper_GLEANR_6138:5]; CDS [Dper\GL23807-cds]; intron [Dper\GL23807-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
star
  1. scaffold_22:1647563-1647583 +
  2. scaffold_1:3753709-3753729 +
  3. dpe_354  scaffold_0:520416-520436 +
  4. scaffold_0:6498609-6498629 +
  5. scaffold_0:8749491-8749511 +
  6. scaffold_69:25785-25805 +
  7. scaffold_77:98235-98255 +
  8. scaffold_6:3749639-3749659 +
  9. scaffold_6:4147191-4147211 +
  10. scaffold_6:4216069-4216089 +
  11. scaffold_9:975354-975374 +
  12. scaffold_9:2497304-2497324 +
  13. scaffold_13:119670-119690 +
  14. scaffold_60:66742-66762 +
  15. scaffold_19:1706765-1706785 +
  16. scaffold_46:314040-314060 +
  17. scaffold_29:943425-943445 +
  18. scaffold_30:82153-82173 +
  19. scaffold_33:615878-615898 +
  20. scaffold_36:373341-373361 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTTCGAGCGGCGGTGGGGAGCGCATCAAGCGATCGGCCAGTCCCTTGGGCGTCTATGCGGATATCAAGAGGGAGCGTCTGAGTGCGGACAGTGCCAGCAGCGATGAGGAGAGGGATCGAGAGCGGGAGCGGGACCGGGATCGGGATCATGATCATTCCAGCAACAACAACAACAACAACAGCGACCTGGCGCACAACAAGAACAAGAGCAGCAGCAGCAACAACAATGGCAACAGCAGCAGCAGGAACAA
****************************************************************************************************((...(((((....((((..((.(((........)))...))..))))....)).)))..)).....................******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V050
head
 V111
male body
....................................................................................................GCGATGAGGAGAGGGATCGAGA................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................CAAGAGCAGCAGCAGCAACAACA......................... 23 0 2 0.50 1 1 0 0 0
...........................................................................CGTCTGAGTGCGGATTGCGC............................................................................................................................................................ 20 3 5 0.20 1 0 1 0 0
..............................................................................................................................................................................................................GAGCAGCAGCAGCAACAACAA........................ 21 0 7 0.14 1 1 0 0 0
..............TGGGGAGTGCATGAAGCGAGC........................................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 1
...............................................................................................................................AGCGGGAGCCGGATCGGGATC....................................................................................................... 21 2 11 0.09 1 0 0 1 0
.........................................................................................................................AGCGGGAGCCGGATCGGGATC............................................................................................................. 21 2 11 0.09 1 0 0 1 0
..................................................................................................................................................................AACAACAACAACAACAACAGC.................................................................... 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

ACAAGCTCGCCGCCACCCCTCGCGTAGTTCGCTAGCCGGTCAGGGAACCCGCAGATACGCCTATAGTTCTCCCTCGCAGACTCACGCCTGTCACGGTCGTCGCTACTCCTCTCCCTAGCTCTCGCCCTCGCCCTGGCCCTAGCCCTAGTACTAGTAAGGTCGTTGTTGTTGTTGTTGTTGTCGCTGGACCGCGTGTTGTTCTTGTTCTCGTCGTCGTCGTTGTTGTTACCGTTGTCGTCGTCGTCCTTGTT
********************************************************************((...(((((....((((..((.(((........)))...))..))))....)).)))..)).....................**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V042
embryo
........................................................................................................................................................................TTGTTGTTCTTGTCGCTGGA............................................................... 20 1 2 0.50 1 1 0 0
.........................................................................................ATCACGGGCGTCGCTACTGCT............................................................................................................................................. 21 3 2 0.50 1 0 1 0
.......CGCCGCCACACTTCGCGTGGTT.............................................................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0
............................GCAATAGCCGGTCAGGGAAC........................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0
...............................................................................ACTCCCGCCTGTCACGGTAA........................................................................................................................................................ 20 3 8 0.13 1 1 0 0
............................................................................................................................................................................................................................TGTGGTTACCGTTGTCGTCTTAGT....... 24 3 14 0.07 1 0 0 1
...AGGTCGCCGCCACCCGACGC.................................................................................................................................................................................................................................... 20 3 17 0.06 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:520254-520504 + dpe_354 TGTTCGAGCGGCGGT------------------GGGGAGCGCATCAAGCGATCGG-CCAGTCCCTTGGG---------CGTCTATGCGGATATCAAGAGGGAGCGTCTGAGT------------GCGGACAGTGC---CAGCAGCGATGAGGAGAGGGAT----------------------------------------------------------------------------CGAGAGCGGGAGCGGGACCGGGATCGGGATCATGATCATTC---CA----------GCA------ACAA------------------C---------AACAACAACAACAGCGACCTGGCGCACAACAAGAACAAGA---------GCAGC---------------------AGCAGCAACAACAATGG---CAACAGCAGC---AGC------AG---------------------GAACAA
dp5 2:6694891-6695135 + TGTTCGAGCGGCGGT------------------GGGGAGCGCATCAAGCGTTCGG-CCAGTCCCTTGGG---------CGTCTATGCGGATATCAAGAGGGAGCGTCTGAGT------------GCGGACAGTGC---CAGCAGCGATGAGGAGAGGGAT----------------------------------------------------------------------------CGAG------AGCGGGACCGGGATCGGGATCATGATCATTC---CA----------GCA------ACAA------------------C---------AACAACAACAACAGCGACCTGGCGCACAACAAGAACAAGA---------GCAAC---------------------AGCAGCAACAACAATGG---CAACAGCAGC---AGC------AG---------------------GAACAA
droWil2 scf2_1100000004943:11929242-11929459 + TGCCCGCCAGTCAGT------------------ACCGAGAGCATTAAACGCTCGG-CCAGTCCAATGGG---------CTCGTATGCGGATATTAAGCGGGAGCGTCTCAGT------------GGTGAAAGTGGTAGTAGTAGCGATGAGGAAC----------------------------------------------------------------------------------------------------------TAAATGATCATCATTCCCACA----------ATA------ACAA---------------CAAC---------AACAATAACAATAGCGATTTAGCTCACAATAAAAACAAGA---------GCAAC---------------------AAT------------GG---CACCACTAAC---AAC------AA---------------------CAACAA
droVir3 scaffold_12855:4632190-4632443 + GCAGTCGCGGCCGCTGCGAACAGAAGCGCCAGCGCCGATGCT-TTAAACAGTCGCGGCGA---TGCGGG---------CAGCGATCGGGGCAGCGAGCGGGGCACGCTCGA-------------GC--------GGG--------------------------------------CTGATAGTCGGGATGAGCTGCTGCAGCTGGA-----------------------------------------------------------CTA---CAGTAC---CA-AGGATAATAATA------ATAG---------TAACAG---C---------AACAACAACAACAACAAC------AACAACAACAACAATAGCAGCAGCAGTAGC---------------------AGCAACAATAACAACAA---CAACAACAAC---AGC------AG---------------------CAGCAA
droMoj3 scaffold_6359:3221583-3221828 + GATGCGGGCGACGGT------------------GAAGCGAAGCCGAAGCTGTT-G-CTGGTTAAGCAGG---------CGTCGGTGCCGG-------------------------------------------------------------------------------------TTGATAACCACAAGGAGTTGCC--AGCTGAACAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGGACGAGCAGCAACAACAGCAGCA------------------GCA------ACAGCAGCAGCAA---------CAACAGCAGCAACAACAACAGCAG---------------------CAACA---------GCAAC---------------------AGCAGCAGCAACAACAA---CAGCAACAGC---AGC------AG---------------------CAGCAA
droGri2 scaffold_15074:965401-965615 + TGTTCCACCTC------------------------CGAGAGCAATAAACGTGCCG-GCAGTCCGATGGG---------CGCCTATACGGATATTAAACGTGAGCGTCTCAGTCCCATGCGCAGTGCGGATAGTGCTAGCAGT---GATGACGATC----------------------------------------------------------------------------------------------------------------ATGAGCATTC---CA----------ACA------ACAA------------------C---------AATAACAACAACAGCGACCTGGCGCACAACAAGAACAACA---------AGAGC---------------------AGCAGC------AACAA---CAACAACAAC---GGC---AG------------------------TAGCAG
droAna3 scaffold_13340:8836096-8836322 + TGTTCCAGCGCCAGC------------------GGAGAGAGCGTGAAGCGGTCAG-GGAGTCCCCTGGGCGGACCGAGCGGCTATCCGGACATCAAGAGGGAGCGGCTGAGC------------GCCGACAGCGGCGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------A----------------------------CAT---------------CAAC---------CTCAACAACAACAGCGACCTGGCGCACAATAAGAACAAGG---------GCTCC------AGCTCCTTTTCCGGAAACG------------G---CAACGGCGCCGGAAACGGAAATGGACAGG---------------------C
droBip1 scf7180000396708:12831-13054 - TGTTCCAGCGCCAGC------------------GGAGAGAGCGTCAAGCGGTCGG-GGAGTCCCCTGGGCGGAGCGGGCGGCTATCCGGACATTAAAAGGGAGCGGTTGAGC------------GCCGACAGCGGCGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------A----------------------------CAT---------------AAAC---------CTCAACAACAACAGCGACCTGGCGCACAATAAGAACAAGG---------GCTCC------AGCTCCTTTTC------CGGAAACGGCAATGG---CAATGGCGCC---GGA---AA------------------------CGGAAA
droKik1 scf7180000302388:1213942-1214168 - TGTTCCAGTGCCAGT------------------GGGGAAAGCGTCAAGAGATCGG-GCAGTCCGCTGGG---------CAACTATGCGGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGTGCCGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCCAGCA----------GAC------ACAC------------------A---CCGGCCAACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGG---------GCAGCGCCTCCTCATCCTCCTT------CG------------GGGCC------------AGCGGCAATGGTCAGG------------------CCAA
droFic1 scf7180000454106:981414-981622 + TGCTCGAGTGCCAGC------------------GGCGAGAGCGTCAAGCGGTCGG-GCAGTCCGCTCGG---------CGGCTATGCGGACATCAAGCGGGAGCGGCTGAGC------------GCCGACAGCGGTGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTC---CG----------GCC------ACAT------------------C---------AACAACAACAACAGCGAGCTGGCGCACAACAAGAACAGCA---------GCAAG---------------------GG---AAGTGGCGGTGG---AAGCGGAGGTGGAGGTGGCAA------------------------------
droEle1 scf7180000491212:2301201-2301460 + TGTTCGAGTGCCAGC------------------GGGGAAAGTGTTAAGCGGTCGG-GCAGTCCGTTGGG---------CAACTATGCGGACATCAAGCGGGAACGGCTGAGT------------GCCGACAGCAATGCCAGCAGCGACGAGGAGC---AGCAGCACCATCCACAC-------------------------------------------------------------CCA---CAGGCACACCACCTGCATCTGCATCA---CCACTC---CA-GCGGCAGTAGCC------ATAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAAA---------GTGGC---------------------AGTG------------G---TGGTGGTGGTGGTGGTGGCAATGG---------------------------
droRho1 scf7180000780293:206746-206962 - TGTTCGAGTGCCAGC------------------GGGGAGAGTGTGAAGCGATCGG-GCAGTCCGCTGGG---------CACCTATGCGGACATCAAGCGGGAGCGGTTGAGC------------GCCGACAGCGGCGGCAGCAGCGACGAGGAGC---AT----------------------------------------------------------------------------C------------------ACCACCAGCACCACCATCACCA---CC----------ACC------ACAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GTGGC---------------------GGTGGC---------------------------GGTGGCAATGGCCAGG----------------------
droBia1 scf7180000302402:6248816-6249041 - TGCTCGAGTGCCAGC------------------GGCGAGAGTGTGAAGCGGTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAACGGCTGAGC------------GCCGACAGCGGCGGGAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGCCCA----------GCCACAGCCACATCCTGCACGGCAGCAGCAGC---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GCGGA---------------------GGCG------------G---TGGC---------GGTGGCGGTGGTCAGG----------------------
droTak1 scf7180000415711:1271229-1271439 - TGCTCGAGTGCCAGC------------------GGGGAGAGTGTGAAGCGGTCGG-GCAGTCCCATCGG---------CAACTATGCCGACATCAAGCGGGAAAGGCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCAGCCGG-------CACAGCCACAT------------------C---ACGGCGAACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGG---------GAGGT---------------------GGA------------------------------GGTGGTAATGGCCAGG----------------------
droEug1 scf7180000409490:1161316-1161511 + TGTTCAAGTGCCAGT------------------GGTGAGAGTGTCAAGCGATCGG-GCAGTCCGATGGG---------TAGCTATGCGGACATTAAGCGAGAAAGATTGAGC------------GCGGATAGCGGAGGCAGCAGTGACGAGGAAC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GTC------ACAT------------------T---------AACAACAACAACAGTGATCTGGCGCACAACAAGAACAAGA---------GCGGA---------------------GGA------------------------------GGTGGCAATGGTCAGG----------------------
dm3 chr3R:17831753-17831955 + TGTTCGAGTGCCAGC------------------GGGGAGAGCGTAAAGCGGTCGG-GCAGTCCCATGGG---------CAACTATGCAGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AACAACAACAACAGCGATTTGGCGCACAACAAGAACAAGA---------GCGGC---------------------GGCG------------G---CGGCGGCGGC---GGCGGCAATGG---------------------------
droSim2 3r:17369463-17369670 + CA--------CCAGC------------------GGGGAGAGCGTGAAGCGATCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAAGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AATAACAACAACAGCGATTTGGCGCACAACAAGAACAAGA---------GCGGC---------------------GGC------------------------------GGCGGCAATGGCCAGACCAATGGGAACGGCAGGAGC--
droSec2 scaffold_0:18202226-18202433 + CA--------CCAGC------------------GGGGAGAGCGTGAAGCGGTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AACAACAACAACAGCGATTTGGCGCACAACAAGAACAAGA---------GCGGC---------------------GGC------------------------------GGCGGCAATGGCCAGACCAATGGGAACGGCAGGAGC--
droYak3 3R:18665435-18665637 + TGTTCGAGTGCCAGC------------------GGAGAGAGTGTGAAGCGTTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGACTGAGC------------GCCGACAGTGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GTC------ACAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GCGGT---------------------GGCG------------G---TGGC---------GGTGGCAATGGTCAGA---------------------C
droEre2 scaffold_4820:10249343-10249557 - TGCTCCAGTGCCAGC------------------GGTGAGAGTGTGAAGCGTTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGGCTGAGC------------GCCGACAGCGGCGGGAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GCGGA---------------------GGAGGTGGAGGTGGCGG---TGAT---------GGGGGCAATGGTCAGA---------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGTTCGAGCGGCGGT------------------GGGGAGCGCATCAAGCGATCGG-CCAGTCCCTTGGG---------CGTCTATGCGGATATCAAGAGGGAGCGTCTGAGT------------GCGGACAGTGC---CAGCAGCGATGAGGAGAGGGAT----------------------------------------------------------------------------CGAGAGCGGGAGCGGGACCGGGATCGGGATCATGATCATTC---CA----------GCA------ACAA------------------C---------AACAACAACAACAGCGACCTGGCGCACAACAAGAACAAGA---------GCAGC---------------------AGCAGCAACAACAATGG---CAACAGCAGC---AGC------AG---------------------GAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................GCGATGAGGAGAGGGAT----------------------------------------------------------------------------CGAGA..............................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................CAAGA---------GCAGC---------------------AGCAGCAACAACA..........................................................2320.501010000
...................................................................................................................................................................................................................................................................................................................................................................................GA---------GCAGC---------------------AGCAGCAACAACAA.........................................................2170.141010000
......................................................................................................................................................................................................................................................................................................A------ACAA------------------C---------AACAACAACAACAGC...................................................................................................................................21200.051010000
dp5
TGTTCGAGCGGCGGT------------------GGGGAGCGCATCAAGCGTTCGG-CCAGTCCCTTGGG---------CGTCTATGCGGATATCAAGAGGGAGCGTCTGAGT------------GCGGACAGTGC---CAGCAGCGATGAGGAGAGGGAT----------------------------------------------------------------------------CGAG------AGCGGGACCGGGATCGGGATCATGATCATTC---CA----------GCA------ACAA------------------C---------AACAACAACAACAGCGACCTGGCGCACAACAAGAACAAGA---------GCAAC---------------------AGCAGCAACAACAATGG---CAACAGCAGC---AGC------AG---------------------GAACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................CAGTCCCTTGGG---------CGTCTATGC........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................ATGAGGAGAGGGAT----------------------------------------------------------------------------CGAG------AGC......................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................TGAGT------------GCGGACAGTGC---CAGCAGCGA............................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................AGCAGCGATGAGGAGAGGGAT----------------------------------------------------------------------------CGAG------.........................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AGC------AG---------------------GAAC..1850.2010000100000
....................................................................................................................................................................................................................................................................................................GCA------ACAA------------------C---------AACAACAACAACA.....................................................................................................................................21200.0510100000000
......................................................................................................................................................................................................................................................................................................A------ACAA------------------C---------AACAACAACAACA.....................................................................................................................................19200.0510100000000
droWil2
TGCCCGCCAGTCAGT------------------ACCGAGAGCATTAAACGCTCGG-CCAGTCCAATGGG---------CTCGTATGCGGATATTAAGCGGGAGCGTCTCAGT------------GGTGAAAGTGGTAGTAGTAGCGATGAGGAAC----------------------------------------------------------------------------------------------------------TAAATGATCATCATTCCCACA----------ATA------ACAA---------------CAAC---------AACAATAACAATAGCGATTTAGCTCACAATAAAAACAAGA---------GCAAC---------------------AAT------------GG---CACCACTAAC---AAC------AA---------------------CAACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................GAAAGTGGTAGTAGTAGC..............................................................................................................................................................................................................................................................................................................................................1811.00101000
.................................................................................GTATGCGGATATTAAGCGGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................................................................GGG---------CTCGTATGCGGATATTAA...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.............................................................................................TAAGCGGGAGCGTCTCAGT------------GGTGA..............................................................................................................................................................................................................................................................................................................................................................2411.00100001
.....................................................................................................................................................AGGAAC----------------------------------------------------------------------------------------------------------TAAATGATCATCATTCCC........................................................................................................................................................................................................2411.00101000
..........................................ATTAAACGCTCGG-CCAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................................................................................................................................................................................................................................................................................................................................AACAATAACAATAGCGATT...............................................................................................................................1911.00100001
...........................................................................................ATTAAGCGGGAGCGTCTCAGT------------GGTGAA.............................................................................................................................................................................................................................................................................................................................................................2711.00100100
......................................................................................................................................GTAGTAGTAGCGATGAGGA......................................................................................................................................................................................................................................................................................................................................1911.00100100
droVir3
GCAGTCGCGGCCGCTGCGAACAGAAGCGCCAGCGCCGATGCT-TTAAACAGTCGCGGCGA---TGCGGG---------CAGCGATCGGGGCAGCGAGCGGGGCACGCTCGA-------------GC--------GGG--------------------------------------CTGATAGTCGGGATGAGCTGCTGCAGCTGGA-----------------------------------------------------------CTA---CAGTAC---CA-AGGATAATAATA------ATAG---------TAACAG---C---------AACAACAACAACAACAAC------AACAACAACAACAATAGCAGCAGCAGTAGC---------------------AGCAACAATAACAACAA---CAACAACAAC---AGC------AG---------------------CAGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................GATAGTCGGGATGAGCTGCTGCAGCT....................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................TA---CAGTAC---CA-AGGATAATAAT.........................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
....................................GATGCT-TTAAACAGTCGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATA------ATAG---------TAACAG---C---------AACAACAACAAC......................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CAACAACAATAGCAGCAGCAGT...............................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................A------ATAG---------TAACAG---C---------AACAACAACAAC......................................................................................................................................2420.501000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AACAAC------AACAACAACAACAA............................................................................................................20200.408008000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................G---------TAACAG---C---------AACAACAACAACAACA..................................................................................................................................24120.081000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTAGC---------------------AGCAACAA...............................................................18190.051000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA---CAACAACAAC---AGC------AG---------------------CAG...25200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACAACAA---CAACAACAAC---A.....................................23200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGTAGC---------------------AGCAA..................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CAACAACAATAGCAGCAGCA.................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................C---------AACAACAACAACAACAAC------AACAAC....................................................................................................................25200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................C------AACAACAACAACAATAGCAGC.....................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAATAGCAGC.....................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAACAACAAC---AGC------AG---------------------CAGC..24200.051000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAACAACAAC---AGC------AG---------------------C.....19200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AC------AACAACAACAACAATAGCAG......................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AACAACAACAAC------AACAACAA..................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACAACAATAGCAGCAGCAG................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
GATGCGGGCGACGGT------------------GAAGCGAAGCCGAAGCTGTT-G-CTGGTTAAGCAGG---------CGTCGGTGCCGG-------------------------------------------------------------------------------------TTGATAACCACAAGGAGTTGCC--AGCTGAACAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGGACGAGCAGCAACAACAGCAGCA------------------GCA------ACAGCAGCAGCAA---------CAACAGCAGCAACAACAACAGCAG---------------------CAACA---------GCAAC---------------------AGCAGCAGCAACAACAA---CAGCAACAGC---AGC------AG---------------------CAGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................CAGCAGGACGAGCAGCAACAACAGC.................................................................................................................................................................................................................2511.001000010
...............................................................................................................................................................................................................................................CAGCAGCAGCAGGACGAGCAGCAACAAC....................................................................................................................................................................................................................2811.001000010
...................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAG.......................................................................................................................................................................................................................................21200.153300000
........................................................................................................................................................................................................................................................................AACAGCAGCA------------------GCA------ACAGCA............................................................................................................................................................................19200.102200000
...........................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................22200.102200000
.............................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAA---------CAACAGC.....................................................................................................................................................20200.102000020
...................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAACAGCAG---------------------CAACA---------.................................................................................................29200.051000010
.............................................................................................................................................................................................................ACAGCAGCAGCAGCAACAGC..............................................................................................................................................................................................................................................................20200.051000010
.........................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCAG---------------------CAACA---------G................................................................................................24200.051100000
.....................................................................................................................................................................................................................................................................AACAACAGCAGCA------------------GCA------ACAGCAGCAGC.......................................................................................................................................................................27200.051000010
................................................................................................................................................................................................................................................................................CA------------------GCA------ACAGCAGCAGCAA---------CA..........................................................................................................................................................20200.051100000
....................................................................................................................................................................................................................................................................................................................................................ACAGCAG---------------------CAACA---------GCAAC---------------------AGCAGCAGCA.............................................................27200.051100000
.........................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGG...................................................................................................................................................................................................................................19200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................A---------GCAAC---------------------AGCAGCAGCAACAACA.......................................................22200.051000010
................................................................................................................................................................................................................................................................................................................................................................................CAACA---------GCAAC---------------------AGCAGCAGCAACA..........................................................23200.051000010
......................................................................................................................................................................................................................................................................................................A------ACAGCAGCAGCAA---------CAACAGCAGCA.................................................................................................................................................25200.051100000
................................................................................................................................................................................................................................................................GCAGCAACAACAGCAGCA------------------GC.........................................................................................................................................................................................20200.051100000
.....................................................................................................................................................................................................................................................................AACAACAGCAGCA------------------GCA------ACAGCAGC..........................................................................................................................................................................24200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAA---CAGCAACAGC---......................................23200.051100000
.................................................................................................................................................................................................................................................................................................................................................ACAACAGCAG---------------------CAACA---------GCAAC---------------------AGCAGC.................................................................26200.051000010
.................................................................................................................................................................................................................................................................................A------------------GCA------ACAGCAGCAGCAA---------CA..........................................................................................................................................................19200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAGCAACAGC---AGC------AG---------------------CAGC..25200.051000010
..........................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAG---------------------CAACA---------GC...............................................................................................24200.051000010
.................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAG---------------------C..............................................................................................................18200.051100000
.........................................................................................................................................................................................................................................................................................................................A---------CAACAGCAGCAACAACAACAGCAG---------------------CAAC...........................................................................................................29200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAGCAACAGC---AGC------AG---------------------CA....21200.051000010
.................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCA------------------GCA------ACAGC.............................................................................................................................................................................25200.051100000
....................................................................................................................................................................................................................................................................CAACAACAGCAGCA------------------GCA------AC................................................................................................................................................................................19200.051100000
........................................................................................................................................................................................................................................................................................................................AA---------CAACAGCAGCAACAACA...........................................................................................................................................19200.051000100
................................................................................................................................................................................................................................................................................................................................................AACAACAGCAG---------------------CAACA---------GCAAC---------------------AG.....................................................................23200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................AACA---------GCAAC---------------------AGCAGCAGCAACAACA.......................................................25200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAA---CAG................................................20200.051000010
.........................................................................................................................................................................................................................................................................................................................................................AG---------------------CAACA---------GCAAC---------------------AGCAGCAGCAACA..........................................................25200.051000010
..............................................................................................................................................................................................................................................................................AGCA------------------GCA------ACAGCAGCAGCAA---------CAA.........................................................................................................................................................23200.051100000
..........................................................................................................................................................................................................................CAACAGCAACAGCAGCAGCA.................................................................................................................................................................................................................................................20200.051100000
...................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAACAGC......................................................................................................................................22200.051100000
......................................................................................................................................................................................................................................................................ACAACAGCAGCA------------------GCA------ACAGCAGCAG........................................................................................................................................................................25200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA---CAGCAACAGC---AGC------AG---------------------CAGCA.27200.051000010
..........................................................................................................................................................................................................................CAACAGCAACAGCAGCAGCAGCAGCAGC.........................................................................................................................................................................................................................................28200.051100000
.................................................................................................................................................................................................................................................................................A------------------GCA------ACAGCAGCAGCAA---------CAACAGCAGC..................................................................................................................................................27200.051000010
...................................................................................................................................................................................................................................................................................................................................................AACAGCAG---------------------CAACA---------GCAAC---------------------AGCAGC.................................................................24200.051100000
droGri2
TGTTCCACCTC------------------------CGAGAGCAATAAACGTGCCG-GCAGTCCGATGGG---------CGCCTATACGGATATTAAACGTGAGCGTCTCAGTCCCATGCGCAGTGCGGATAGTGCTAGCAGT---GATGACGATC----------------------------------------------------------------------------------------------------------------ATGAGCATTC---CA----------ACA------ACAA------------------C---------AATAACAACAACAGCGACCTGGCGCACAACAAGAACAACA---------AGAGC---------------------AGCAGC------AACAA---CAACAACAAC---GGC---AG------------------------TAGCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................AACAGCGACCTGGCGCACA......................................................................................................................1911.00110
..................................................................................................................................................................................................................................................................................................................................................................................ACA---------AGAGC---------------------AGCAGC------AACAA---C..................................................2020.50110
....................................................................................................................................................................................................................................................................................................................................................................................A---------AGAGC---------------------AGCAGC------AACAA---CAACAAC............................................2420.50110
.................................................................................................................................................................................................................................................................................................................................................................................AACA---------AGAGC---------------------AGCAGC------AACAA---CAACA..............................................2520.50101
...........................................................................................................................................................................................................................................................................................................................................................................AAGAACAACA---------AGAGC---------------------AGCA...................................................................1940.25110
droAna3
TGTTCCAGCGCCAGC------------------GGAGAGAGCGTGAAGCGGTCAG-GGAGTCCCCTGGGCGGACCGAGCGGCTATCCGGACATCAAGAGGGAGCGGCTGAGC------------GCCGACAGCGGCGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------A----------------------------CAT---------------CAAC---------CTCAACAACAACAGCGACCTGGCGCACAATAAGAACAAGG---------GCTCC------AGCTCCTTTTCCGGAAACG------------G---CAACGGCGCCGGAAACGGAAATGGACAGG---------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................GGACATCAAGAGGGAGCGGCTGA.................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCGCCGGAAACGGAAATGGACA........................2711.001000010
......................................................................................................................................................................................................................................................................................................................................................................ACAATAAGAACAAGG---------GCTCC------A.....................................................................................2111.001000010
.........................................................GAGTCCCCTGGGCGGACCGAGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...........................................................................GAGCGGCTATCCGGACATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................AGAGGGAGCGGCTGAGC------------GCCGACAGCGGC.......................................................................................................................................................................................................................................................................................................................................................2911.001000001
...............................................................................................................................GACAGCGGCGGCAGCAGCGACGAG........................................................................................................................................................................................................................................................................................................................................2411.001000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCGCCGGAAACGGA................................1811.001100000
...TCCAGCGCCAGC------------------GGAGAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................G------------G---CAACGGCGCCGGAAACGGAAAT.............................2411.001100000
...................................................................................................................................GCGGCGGCAGCAGCGACGAGGA......................................................................................................................................................................................................................................................................................................................................2211.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................G------------G---CAACGGCGCCGGAAACGGA................................2111.001000010
droBip1
TGTTCCAGCGCCAGC------------------GGAGAGAGCGTCAAGCGGTCGG-GGAGTCCCCTGGGCGGAGCGGGCGGCTATCCGGACATTAAAAGGGAGCGGTTGAGC------------GCCGACAGCGGCGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------A----------------------------CAT---------------AAAC---------CTCAACAACAACAGCGACCTGGCGCACAATAAGAACAAGG---------GCTCC------AGCTCCTTTTC------CGGAAACGGCAATGG---CAATGGCGCC---GGA---AA------------------------CGGAAASizeHit CountTotal NormTotal
No Reads
droKik1
TGTTCCAGTGCCAGT------------------GGGGAAAGCGTCAAGAGATCGG-GCAGTCCGCTGGG---------CAACTATGCGGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGTGCCGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCCAGCA----------GAC------ACAC------------------A---CCGGCCAACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGG---------GCAGCGCCTCCTCATCCTCCTT------CG------------GGGCC------------AGCGGCAATGGTCAGG------------------CCAASizeHit CountTotal NormTotal
No Reads
droFic1
TGCTCGAGTGCCAGC------------------GGCGAGAGCGTCAAGCGGTCGG-GCAGTCCGCTCGG---------CGGCTATGCGGACATCAAGCGGGAGCGGCTGAGC------------GCCGACAGCGGTGGCAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTC---CG----------GCC------ACAT------------------C---------AACAACAACAACAGCGAGCTGGCGCACAACAAGAACAGCA---------GCAAG---------------------GG---AAGTGGCGGTGG---AAGCGGAGGTGGAGGTGGCAA------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGTTCGAGTGCCAGC------------------GGGGAAAGTGTTAAGCGGTCGG-GCAGTCCGTTGGG---------CAACTATGCGGACATCAAGCGGGAACGGCTGAGT------------GCCGACAGCAATGCCAGCAGCGACGAGGAGC---AGCAGCACCATCCACAC-------------------------------------------------------------CCA---CAGGCACACCACCTGCATCTGCATCA---CCACTC---CA-GCGGCAGTAGCC------ATAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAAA---------GTGGC---------------------AGTG------------G---TGGTGGTGGTGGTGGTGGCAATGG---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGTTCGAGTGCCAGC------------------GGGGAGAGTGTGAAGCGATCGG-GCAGTCCGCTGGG---------CACCTATGCGGACATCAAGCGGGAGCGGTTGAGC------------GCCGACAGCGGCGGCAGCAGCGACGAGGAGC---AT----------------------------------------------------------------------------C------------------ACCACCAGCACCACCATCACCA---CC----------ACC------ACAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GTGGC---------------------GGTGGC---------------------------GGTGGCAATGGCCAGG----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCTCGAGTGCCAGC------------------GGCGAGAGTGTGAAGCGGTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAACGGCTGAGC------------GCCGACAGCGGCGGGAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGCCCA----------GCCACAGCCACATCCTGCACGGCAGCAGCAGC---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GCGGA---------------------GGCG------------G---TGGC---------GGTGGCGGTGGTCAGG----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGCTCGAGTGCCAGC------------------GGGGAGAGTGTGAAGCGGTCGG-GCAGTCCCATCGG---------CAACTATGCCGACATCAAGCGGGAAAGGCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCAGCCGG-------CACAGCCACAT------------------C---ACGGCGAACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGG---------GAGGT---------------------GGA------------------------------GGTGGTAATGGCCAGG----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGTTCAAGTGCCAGT------------------GGTGAGAGTGTCAAGCGATCGG-GCAGTCCGATGGG---------TAGCTATGCGGACATTAAGCGAGAAAGATTGAGC------------GCGGATAGCGGAGGCAGCAGTGACGAGGAAC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GTC------ACAT------------------T---------AACAACAACAACAGTGATCTGGCGCACAACAAGAACAAGA---------GCGGA---------------------GGA------------------------------GGTGGCAATGGTCAGG----------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGTTCGAGTGCCAGC------------------GGGGAGAGCGTAAAGCGGTCGG-GCAGTCCCATGGG---------CAACTATGCAGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AACAACAACAACAGCGATTTGGCGCACAACAAGAACAAGA---------GCGGC---------------------GGCG------------G---CGGCGGCGGC---GGCGGCAATGG---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCGATTTGGCGCAC.......................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------............................................................................................................................................................2612.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................ATCAAGCGGGAGCGCCTGAGC------------GC.................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GC.........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.GTTCGAGTGCCAGC------------------GGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................AACAGCGATTTGGCGCACAA.....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CAAGCGGGAGCGCCTGAGC------------GCC................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCGAGTGCCAGC------------------GGGGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................................GATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GC.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................ATCAAGCGGGAGCGCCTGAGC------------GCCGAC.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GCGGGAGCGCCTGAGC------------GCC................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGG........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................GGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCC......................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCCAGC------------------GGGGAGAGCGTAAAGCGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................................................................................GCGATTTGGCGCACAACA...................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AGCGGTCGG-GCAGTCCCATG............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................GCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGG........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................GAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------AC................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGTGCCAGC------------------GGGGAGAGCGTAAAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................C---------AACAACAACAACAGCGATTTGG............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................TGAGC------------GCCGACAGCGGCG......................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TATGCAGACATCAAGCGGGAGCGCC....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................AAGCGGTCGG-GCAGTCCCATG............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCGATTTGGCGC.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GACAGCGGCGGCAGCAGCGATGA.........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................GGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------AC............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................GCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCG.........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................ATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................AGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------..................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCGAGTGCCAGC------------------GGGGAGAGCGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......AGTGCCAGC------------------GGGGAGAGCGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................AACAGCGATTTGGCGCACA......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTCGAGTGCCAGC------------------GGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............GC------------------GGGGAGAGCGTAAAGCGGTCGG-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................CATCAAGCGGGAGCGCCTGAGC------------GC.................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAACAAGA---------GCGGC---------------------.......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CTATGCAGACATCAAGCGGGAGCGCCTG..................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGGCGCACAACAAGAAC..............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GC.........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................GCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GC.........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................GGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------AC................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................ACAAGAACAAGA---------GCGGC---------------------GGCG------------G---C..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................AGAACAAGA---------GCGGC---------------------GGCG------------G---C..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................GTAAAGCGGTCGG-GCAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................C---------------------GGCG------------G---CGGCGGCGGC---GGCGG.................................21200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009
...............................................................................................................................................................................................................................................................................................................................................................................................CGGC---------------------GGCG------------G---CGGCGGCGGC---GG....................................21200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------G---CGGCGGCGGC---GGCG..................................18200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCG------------G---CGGCGGCGGC---GGCGGC................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------GGCG------------G---CGGCGGCGGC---GGC...................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GCGGC---------------------GGCG------------G---CGGCGGCGGC---......................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
droSim2
CA--------CCAGC------------------GGGGAGAGCGTGAAGCGATCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAAGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AATAACAACAACAGCGATTTGGCGCACAACAAGAACAAGA---------GCGGC---------------------GGC------------------------------GGCGGCAATGGCCAGACCAATGGGAACGGCAGGAGC--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................AACAACAGCGATTTGGCG..........................................................................................................................1811.00110000000000000000
.A--------CCAGC------------------GGGGAGAGCGTGAAGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................AACAGCGATTTGGCGCACAACAAGAAC..............................................................................................................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGGCCAGACCAATGGGAAC...........2411.00100010000000000000
droSec2
CA--------CCAGC------------------GGGGAGAGCGTGAAGCGGTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGCCTGAGC------------GCCGACAGCGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AACAACAACAACAGCGATTTGGCGCACAACAAGAACAAGA---------GCGGC---------------------GGC------------------------------GGCGGCAATGGCCAGACCAATGGGAACGGCAGGAGC--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGGCCAGACCAATGG...............2011.0011000
.................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCGATTTGGCGCA........................................................................................................................2211.0010100
...............................................................................................................................................................................................................................................................................................................AT------------------C---------AACAACAACAACAGCGATTTG.............................................................................................................................2411.0010100
..................................................................................................................................................ATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------..................................................................................................................................................................................2111.0011000
.....................................................................................................................................................AGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------AC................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAATGGGAACGGCAGGAGC--2211.0010001
droYak3
TGTTCGAGTGCCAGC------------------GGAGAGAGTGTGAAGCGTTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGACTGAGC------------GCCGACAGTGGCGGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GTC------ACAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GCGGT---------------------GGCG------------G---TGGC---------GGTGGCAATGGTCAGA---------------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................CTCGGCCA----------GTC------ACAT------------------C---------AACAACAAC.........................................................................................................................................2512.00220000000000
.................................................................................................................................................GATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GT.........................................................................................................................................................................................2112.00200000020000
........................................................................................................GACTGAGC------------GCCGACAGTGGCGGC....................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
........................................................................................................................................GGCAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCC......................................................................................................................................................................................................2711.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................ATCTGGCGCACAACAAGAA...............................................................................................................1911.00101000000000
.....................................................................................................AGCGACTGAGC------------GCCGACAGT..........................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................A---------GCGGT---------------------GGCG------------G---TGGC---------GGTGGCAATGGTC.........................2811.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................ACAAGA---------GCGGT---------------------GGCG------------G---TGGC---------GGTGGC................................2611.00101000000000
.................................................................................................................................................GATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GTC------ACAT------------------............................................................................................................................................................2611.00100000010000
..........................................................................................CATCAAGCGGGAGCGACTGA.................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................ACAGCGATCTGGCGCACAA.....................................................................................................................1911.00101000000000
....................................................................................TGCGGACATCAAGCGGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................CACAACAAGAACAAGA---------GCGGT---------------------.......................................................................2111.00100000010000
..........................................................................................................................................CAGCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GTC------..................................................................................................................................................................................2911.00100000010000
............................................................................................................................................GCAGCGATGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGC.......................................................................................................................................................................................................2211.00100000010000
................................................................................................GCGGGAGCGACTGAGC------------GC.................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................GA---------GCGGT---------------------GGCG------------G---TGGC---------GG....................................1811.00101000000000
.GTTCGAGTGCCAGC------------------GGAGAGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................ACAAGAACAAGA---------GCGGT---------------------GGC....................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCGA.................................................................................................................................15200.05100000000001
droEre2
TGCTCCAGTGCCAGC------------------GGTGAGAGTGTGAAGCGTTCGG-GCAGTCCCATGGG---------CAACTATGCGGACATCAAGCGGGAGCGGCTGAGC------------GCCGACAGCGGCGGGAGCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GCC------ACAT------------------C---------AACAACAACAACAGCGATCTGGCGCACAACAAGAACAAGA---------GCGGA---------------------GGAGGTGGAGGTGGCGG---TGAT---------GGGGGCAATGGTCAGA---------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................CATCAAGCGGGAGCGGCTGAGC------------GC.................................................................................................................................................................................................................................................................................................................................................................2412.0021000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GG---TGAT---------GGGGGCAATGGT..........................1811.0010000100
................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCGATCTGGCGC.........................................................................................................................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................GCGGA---------------------GGAGGTGGAGGTGGCGG---TGA................................................2511.0011000000
..................................................................GGG---------CAACTATGCGGACATCAAGCGGGA.........................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...............................................................................................................................................................................................................................................................................................................AT------------------C---------AACAACAACAACAGCGATCT..............................................................................................................................2311.0010000100
............................................................................................................................................GCAGCGACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCC......................................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................................................................................................................................................................................C---------AACAACAACAACAGCGATCTGGC...........................................................................................................................2411.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGTGGCGG---TGAT---------GGG...................................2011.0010000100
..............................................................CCATGGG---------CAACTATGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....................................................CGG-GCAGTCCCATGGG---------CAACTATGC........................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................................................................................................................................................................................................................................................................................................C---------AACAACAACAACAGCGATCTG.............................................................................................................................2211.0010000100
........................................................................................................................................................................................................................................................................................................................................................................AACAAGAACAAGA---------GCGGA---------------------GGAGGTGGA..............................................................2711.0010000100
..................................................................................................................................................ACGAGGAGC----------------------------------------------------------------------------------------------------------------------ACTCGGCCA----------GC.........................................................................................................................................................................................2011.0010000100
..........................................................................................CATCAAGCGGGAGCGGCTGAGC------------GCCGACAG...........................................................................................................................................................................................................................................................................................................................................................3011.0010000100

Generated: 06/08/2015 at 02:35 PM