ID:

dpe_35

 Coordinate:

scaffold_10:2584959-2585018 +

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.9 -33.7 -33.4

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dpe_34  scaffold_10:2581447-2581468 +
  2. dpe_40  scaffold_10:2582158-2582179 +
  3. dpe_35  scaffold_10:2584996-2585017 +
  4. dpe_36  scaffold_8585:695-716 +
  5. dpe_38  scaffold_7193:482-503 +
  6. dpe_39  scaffold_9415:578-599 +
  7. dpe_37  scaffold_7821:401-422 +
star
  1. dpe_34  scaffold_10:2581410-2581431 +
  2. dpe_35  scaffold_10:2584959-2584980 +

Sense Strand Reads

GTGATTTTGAAAATGAGAGTGTTTCCCCGACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATGTTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTATCCTCATGTATCCTTAGCATGGCTTAGATCAAGATATGA
***********************************(((((.(((.((((.((((((((.(((..((((((((..(((....))).))))))))..))).)))))))).)))).))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V050
head
 V042
embryo
 M021
embryo
 V057
head
.......................................................................................TAAGTCTGTTGAGTGCCATAGA................................................... 22 0 7 237.43 1662 1569 38 24 18 8 5
.......................................................................................TAAGTCTGTTGAGTGCCATAG.................................................... 21 0 7 208.14 1457 1415 24 13 2 0 3
.......................................................................................TAAGTCTGTTGAGTGCCATAGAA.................................................. 23 1 7 19.14 134 133 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATA..................................................... 20 0 7 15.29 107 97 5 5 0 0 0
..................................................TATGGCACACAGTTGATTTATG........................................................................................ 22 0 2 14.00 28 9 13 3 3 0 0
..................................................TATGGCACACAGTTGATTTATGT....................................................................................... 23 0 2 13.50 27 26 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAA................................................. 24 2 7 8.14 57 57 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGT................................................... 22 1 7 4.86 34 34 0 0 0 0 0
..................................................TATGGCACACAGTTGATTTAT......................................................................................... 21 0 4 4.25 17 13 3 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAT...................................................... 19 0 7 4.00 28 22 4 2 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATT..................................................... 20 1 7 3.14 22 16 5 1 0 0 0
........................................................................................AAGTCTGTTGAGTGCCATAGA................................................... 21 0 7 3.14 22 21 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCA....................................................... 18 0 7 3.14 22 11 6 5 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAA.................................................... 21 1 7 3.14 22 21 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAT.................................................. 23 1 7 3.00 21 21 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAG.................................................. 23 0 7 1.86 13 13 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTT.................................................... 21 2 7 1.86 13 10 3 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAA................................................ 25 2 7 1.43 10 10 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGC................................................... 22 1 7 1.14 8 7 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATC..................................................... 20 1 7 1.00 7 6 1 0 0 0 0
..................................................TATGGCACACAGTTGATTTATGTT...................................................................................... 24 0 2 1.00 2 1 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAA................................................... 22 1 7 1.00 7 7 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTC.................................................... 21 2 7 1.00 7 7 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTT.................................................. 23 2 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTC.................................................. 23 2 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAATTCTGTTGAGTGCCATAG.................................................... 21 1 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGG................................................... 22 1 7 0.71 5 2 0 0 0 3 0
.......................................................................................TAAGTCTGTTGAGTGCCATCG.................................................... 21 1 7 0.71 5 5 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTT................................................... 22 3 8 0.63 5 3 1 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCC................................................... 22 3 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAA...................................................... 19 1 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCT.................................................... 21 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAA.................................................. 23 2 7 0.57 4 4 0 0 0 0 0
......................................................................................CTAAGTCTGTTGAGTGCCATAGA................................................... 23 1 7 0.57 4 3 0 0 0 0 1
.......................................................................................TAACTCTGTTGAGTGCCATAG.................................................... 21 1 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCC................................................. 24 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAT................................................. 24 2 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCCC................................................... 22 3 7 0.57 4 4 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAT.................................................... 21 1 7 0.57 4 4 0 0 0 0 0
................................................TATATGGCACACAGTTGATTTATGT....................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
................................................TATATGGCACACAGTTGATTTATGTCG..................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0
..................................................TATGGCACACAGTTGATTTATT........................................................................................ 22 1 4 0.50 2 1 1 0 0 0 0
..................................................TATGTCACACAGTTGATTTATGT....................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................TATGGCACACAGTTGATTTA.......................................................................................... 20 0 4 0.50 2 1 0 1 0 0 0
..................................................TATGGCACGCAGTTGATTTATG........................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
..................................................TATGGCACACAGTTGATTTATGTCC..................................................................................... 25 2 2 0.50 1 0 1 0 0 0 0
..................................................TATGGCTCACAGTTGATTTATG........................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................TAAGTCTTTTGAGTGCCATAGA................................................... 22 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGACATAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCCGTTGAGTGCCATAGA................................................... 22 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGCCTGTTGAGTGCCATAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
........................................................................................AAGTCTGTTGAGTGCCATAG.................................................... 20 0 7 0.43 3 2 1 0 0 0 0
.......................................................................................TAAGTCTGGTGAGTGCCATAGA................................................... 22 1 7 0.43 3 0 3 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTT..................................................... 20 2 7 0.43 3 1 2 0 0 0 0
.......................................................................................TAAGTCTGTTGGGTGCCATAGA................................................... 22 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATATT................................................... 22 2 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGCGCCATAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCACAG.................................................... 21 1 7 0.43 3 3 0 0 0 0 0
..................................................TATGGCATACAGTTGATTTATGT....................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAAAA.................................................... 21 2 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCCGTTGAGTGCCATAG.................................................... 21 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................CAAGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTC................................................. 24 2 7 0.29 2 1 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTCG.................................................. 23 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCC.................................................... 21 2 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGCCTGTTGAGTGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCT................................................. 24 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTAA.................................................. 23 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAATGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTC................................................... 22 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCG................................................... 22 3 7 0.29 2 2 0 0 0 0 0
....................................................................................TCATAAGTCTGTTGAGTGCCATAGA................................................... 25 0 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTTAA................................................... 22 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGGGCCATAG.................................................... 21 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTTCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.......................................................................................TAATTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.29 2 2 0 0 0 0 0
...................................................ATGGCACACAGTTGATTTAT......................................................................................... 20 0 4 0.25 1 0 1 0 0 0 0
..................................................TATGGCACACAGTTGATTTATCA....................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
..................................................TATGGCACACAGTTGATTTC.......................................................................................... 20 1 4 0.25 1 1 0 0 0 0 0
..................................................TAGGGCATACAGTTGATGTATG........................................................................................ 22 3 4 0.25 1 0 0 0 1 0 0
..................................................TATGGCACACAGTTGATTTATC........................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0
...................................................ATGGCACATAGTGGATTTAT......................................................................................... 20 2 4 0.25 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAA............................................... 26 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAAA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCCGTTGAATGCCATAG.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAG.................................................. 23 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTA.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTCGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTCGAGTGCCATAGAA.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCCTAGT................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.........................................................................................AGTCTGTTGAGTGCCATA..................................................... 18 0 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCCT...................................................... 19 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................GAAGTCTGTTGAGTGCCATA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTACCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTTAGTGCCATAGA................................................... 22 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCACAA.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAG................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TCAGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGACTGTTGAGAGCCATAGA................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................TAAGTCTGTTGAGTGCAATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGGGCCATGGA................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCTT................................................... 22 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAGA................................................ 25 2 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTTGAGTGCCATAGAA.................................................. 22 1 7 0.14 1 0 1 0 0 0 0
..............................................................................TCTAGTTCATAAGTCTGTTGAGTGC......................................................... 25 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATCCT............................................... 26 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATC................................................. 24 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTACCATA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGCTGAGTGCCATAGA................................................... 22 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTAA................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAGGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTCGAGTGCCATAGA................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAG................................................. 24 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAACTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TACGTCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTTCCATAGAT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
............................................................................TTTCTAGTTCATAAGTCTGTTGAGTGC......................................................... 27 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCGGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATGG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAAA................................................. 24 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGACTGTTGAGTGCCATAG.................................................... 21 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTGACATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
........................................................................................AAGTCTGTTAAGTGCCATAGA................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATCCC............................................... 26 3 7 0.14 1 1 0 0 0 0 0
.........................................................................................AGTCTGTTGAGTGCCATAGA................................................... 20 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAAAA............................................. 28 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTTCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCGATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGATGAGTGCCATAG.................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTAAGTGCCAT...................................................... 19 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTCCC................................................ 25 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGTTT................................................. 24 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCACAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTTTTGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGATTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAAAAG................................................. 24 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGACTGCCATAGAA.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
...................................................................................TTCATAAGTCTGTTGAGTG.......................................................... 19 0 7 0.14 1 1 0 0 0 0 0
..........................................................................................GTCTGTTGAGTGCCATAG.................................................... 18 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGGTGAGTGCCATAG.................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGATCC................................................ 25 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTATTGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGAGCCATAA.................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTCAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAGA..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGATTGCCATCGA................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................TAAGGCTGTTGAGTGCCATAGAA.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
..........................................................................................GTCTGTTGAGTGCCATAGA................................................... 19 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTATGTTGAGTGCCA....................................................... 18 1 7 0.14 1 0 0 1 0 0 0
.......................................................................................TAAGTCTGTTGAGTCCCATTGT................................................... 22 3 7 0.14 1 0 0 0 0 0 1
.......................................................................................TAAGTCTGTTGAGTGCCATAGCCC................................................. 24 2 7 0.14 1 0 1 0 0 0 0
........................................................................................AAGTCTGTGGAGTGCCATAGA................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGCT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTCTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTCGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCCG.................................................. 23 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAATCTGTTGAGTGCCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGGCTGTTGAGTGCCA....................................................... 18 1 7 0.14 1 0 0 1 0 0 0
...............................................................................CTAGTTCATAAGTCTGTTGAGTGCCA....................................................... 26 0 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCGTAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAG................................................ 25 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAC.................................................. 23 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAATCTGTTGAGTGCCATAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATG..................................................... 20 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCAAAAA................................................... 22 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTT...................................................... 19 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTAG................................................... 22 3 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAAT.............................................. 27 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTTA................................................... 22 2 7 0.14 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATAGAAAAAA.............................................. 27 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGTCATAG.................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCCGTTGAGTGCCATAGAAAA................................................ 25 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTTTGTTGAGTGCCATAGAT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAACTCTGTTGAGTGCCATAGAT.................................................. 23 2 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGGGCCATAGA................................................... 22 1 7 0.14 1 0 0 0 1 0 0
.......................................................................................TAAGTCTGTTGAGTGCCCTAGA................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATTCT................................................... 22 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTTA.................................................... 21 3 8 0.13 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGATGAGTGCCATAGTT.................................................. 23 3 8 0.13 1 0 1 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATGGTC.................................................. 23 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCATCCT................................................... 22 3 8 0.13 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTC...................................................... 19 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGCTGAGTGCCATT..................................................... 20 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................TAAGTCTGTTGAGTGCCTTTT.................................................... 21 3 11 0.09 1 1 0 0 0 0 0
......TTGAAAATTAGAGTGTTC........................................................................................................................................ 18 2 16 0.06 1 0 1 0 0 0 0
.........................................................................................AAGTTGTTGAGTGCCATAG.................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CACTAAAACTTTTACTCTCACAAAGGGGCTGGTTTACGTGTAAGCACGATATACCGTGTGTCAACTAAATACAATAAAAGATCAAGTATTCAGACAACTCACGGTATCTCGTTCTTCACATAGGAGTACATAGGAATCGTACCGAATCTAGTTCTATACT
************************************(((((.(((.((((.((((((((.(((..((((((((..(((....))).))))))))..))).)))))))).)))).))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_10:2584909-2585068 + dpe_35 GTGATTTTGAAAATGAG------------------AGTGTTTCCCCGACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATGTTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGT-----ATCCTCATGTATCCTTAGCATGGCTTAGATCAAGATATGA
dp5 4_group4:3552504-3552686 + dps-mir-2511-1 GTGATTTTGAAAAAGAAAGTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGATATGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GTGATTTTGAAAATGAG------------------AGTGTTTCCCCGACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATGTTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGT-----ATCCTCATGTATCCTTAGCATGGCTTAGATCAAGATATGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................TAAGTCTGTTGAGTGCCATAGA........................................................227237.431662838182451569
.........................................................................................................TAAGTCTGTTGAGTGCCATAG.........................................................217208.14145702421331415
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAA.......................................................23719.1413401000133
.........................................................................................................TAAGTCTGTTGAGTGCCATA..........................................................20715.291070505097
....................................................................TATGGCACACAGTTGATTTATG.............................................................................................22214.00280133309
....................................................................TATGGCACACAGTTGATTTATGT............................................................................................23213.50270001026
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAA......................................................2478.14570000057
.........................................................................................................TAAGTCTGTTGAGTGCCATAGT........................................................2274.86340000034
....................................................................TATGGCACACAGTTGATTTAT..............................................................................................2144.25170301013
.........................................................................................................TAAGTCTGTTGAGTGCCAT...........................................................1974.00280402022
.........................................................................................................TAAGTCTGTTGAGTGCCATT..........................................................2073.14220501016
..........................................................................................................AAGTCTGTTGAGTGCCATAGA........................................................2173.14220100021
.........................................................................................................TAAGTCTGTTGAGTGCCA............................................................1873.14220605011
.........................................................................................................TAAGTCTGTTGAGTGCCATAA.........................................................2173.14220001021
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAT.......................................................2373.00210000021
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAG.......................................................2371.86130000013
.........................................................................................................TAAGTCTGTTGAGTGCCATTT.........................................................2171.86130300010
.........................................................................................................TAAGTCTGTTGAGTGCCATAGC........................................................2271.148010007
.........................................................................................................TAAGTCTGTTGAGTGCCATC..........................................................2071.007010006
....................................................................TATGGCACACAGTTGATTTATGTT...........................................................................................2421.002010001
.........................................................................................................TAAGTCTGTTGAGTGCCATTC.........................................................2171.007000007
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTT.......................................................2370.715000005
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTC.......................................................2370.715000005
.........................................................................................................TAAGTCTGTTGAGTGCCATAGG........................................................2270.715300002
.........................................................................................................TAAGTCTGTTGAGTGCCATTTT........................................................2280.635010103
.........................................................................................................TAAGTCTGTTGAGTGCCATTCC........................................................2270.574000004
.........................................................................................................TAAGTCTGTTGAGTGCCAA...........................................................1970.574000004
.........................................................................................................TAAGTCTGTTGAGTGCCATCT.........................................................2170.574000004
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAT......................................................2470.574000004
.........................................................................................................TAAGTCTGTTGAGTGCCATCCC........................................................2270.574000004
.........................................................................................................TAAGTCTGTTGAGTGCCATAT.........................................................2170.574000004
..................................................................TATATGGCACACAGTTGATTTATGT............................................................................................2520.501000001
..................................................................TATATGGCACACAGTTGATTTATGTCG..........................................................................................2720.501000001
....................................................................TATGGCACACAGTTGATTTATT.............................................................................................2240.502010001
....................................................................TATGGCACACAGTTGATTTA...............................................................................................2040.502000101
....................................................................TATGGCACACAGTTGATTTATGTCC..........................................................................................2520.501010000
..........................................................................................................AAGTCTGTTGAGTGCCATAG.........................................................2070.433010002
.........................................................................................................TAAGTCTGTTGAGTGCCATATT........................................................2270.433000003
.........................................................................................................TAAGTCTGTTGAGTGCCATCC.........................................................2170.292000002
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTCT......................................................2470.292000002
.........................................................................................................TAAGTCTGTTGAGTGCCATTTC........................................................2270.292000002
.........................................................................................................TAAGTCTGTTGAGTGCCATTCG........................................................2270.292000002
......................................................................................................TCATAAGTCTGTTGAGTGCCATAGA........................................................2570.292000002
.....................................................................ATGGCACACAGTTGATTTAT..............................................................................................2040.251010000
....................................................................TATGGCACACAGTTGATTTATCA............................................................................................2340.251000001
....................................................................TATGGCACACAGTTGATTTC...............................................................................................2040.251000001
....................................................................TATGGCACACAGTTGATTTATC.............................................................................................2240.251000001
.........................................................................................................TAAGTCTGTTGAGTGCCATTA.........................................................2170.141000001
...........................................................................................................AGTCTGTTGAGTGCCATA..........................................................1870.141010000
.........................................................................................................TAAGTCTGTTGAGTGCCATAAG........................................................2270.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATCTT........................................................2270.141000001
..........................................................................................................AAGTCTGTTGAGTGCCATAGAA.......................................................2270.141010000
................................................................................................TCTAGTTCATAAGTCTGTTGAGTGC..............................................................2570.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAG......................................................2470.141000001
..............................................................................................TTTCTAGTTCATAAGTCTGTTGAGTGC..............................................................2770.141000001
...........................................................................................................AGTCTGTTGAGTGCCATAGA........................................................2070.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTTT......................................................2470.141000001
.....................................................................................................TTCATAAGTCTGTTGAGTG...............................................................1970.141000001
............................................................................................................GTCTGTTGAGTGCCATAG.........................................................1870.141000001
............................................................................................................GTCTGTTGAGTGCCATAGA........................................................1970.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATAGCT.......................................................2370.141000001
.................................................................................................CTAGTTCATAAGTCTGTTGAGTGCCA............................................................2670.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAAG.....................................................2570.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAC.......................................................2370.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATG..........................................................2070.141000001
.........................................................................................................TAAGTCTGTTGAGTGCCATTAG........................................................2270.141010000
.........................................................................................................TAAGTCTGTTGAGTGCCATTCT........................................................2280.131000001
.........................................................................................................TAAGTCTGTTGAGTGCCATCCT........................................................2280.131000001
.........................................................................................................TAAGTCTGTTGAGTGCCTC...........................................................1990.111000001
dp5
GTGATTTTGAAAAAGAAAGTAACCGTGTTGAGGAAAGTGTTTCCCCCACCAAATGCACATTCGTGCTATATGGCACACAGTTGATTTATATTATTTTCTAGTTCATAAGTCTGTTGAGTGCCATAGAGCAAGAAGTGTGATGCATCCTCATGTATCCTTAGCATGGCTTAGATCAAGATATGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................TAAGTCTGTTGAGTGCCATAGA........................................................2225788.50115772914518161532517151076921
.........................................................................................................TAAGTCTGTTGAGTGCCATAG.........................................................2121369.50273918004118388722346
....................................................................TATGGCACACAGTTGATTTATA.............................................................................................223141.0042301541000203911
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAA.......................................................232136.502732500025512080
.........................................................................................................TAAGTCTGTTGAGTGCCATA..........................................................202117.0023411201012401950
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTAA......................................................24275.50151000000001510
..........................................................................................................AAGTCTGTTGAGTGCCATAGA........................................................21265.001300160100160970
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAA......................................................24244.5089120001260590
.........................................................................................................TAAGTCTGTTGAGTGCCATAGC........................................................22240.008000010030760
.........................................................................................................TAAGTCTGTTGAGTGCCATAA.........................................................21238.0076010001170561
.........................................................................................................TAAGTCTGTTGAGTGCCATAGT........................................................22235.007002000080600
....................................................................TATGGCACACAGTTGATTTAT..............................................................................................21330.67921130200130630
.........................................................................................................TAAGTCTGTTGAGTGCCATT..........................................................20221.004202000010390
....................................................................TATGGCACACAGTTGATTTATAA............................................................................................23316.675002000000480
.........................................................................................................TAAGTCTGTTGAGTGCCAT...........................................................19216.503313000030260
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAT.......................................................23213.502700000020250
.........................................................................................................TAAGTCTGTTGAGTGCCATTT.........................................................2139.002700000030240
.........................................................................................................TAAGTCTGTTGAGTGCCA............................................................1828.001600000040120
..........................................................................................................AAGTCTGTTGAGTGCCATAG.........................................................2027.50150900001050
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAG.......................................................2326.501301000010110
....................................................................TATGGCACACAGTTGATTTA...............................................................................................2036.001801000000170
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTT.......................................................2326.001200000020100
.........................................................................................................TAAGTCTGTTGAGTGCCATAGATA......................................................2425.501100000000110
.........................................................................................................TAAGTCTGTTGAGTGCCATAGCTG......................................................2424.5090000000090
.........................................................................................................TAAGTCTGTTGAGTGCCATTA.........................................................2124.5090000000090
.........................................................................................................TAAGTCTGTTGAGTGCCATAGATT......................................................2433.671100000010100
.........................................................................................................TAAGTCTGTTGAGTGCCATC..........................................................2023.5070000011050
...........................................................................................................AGTCTGTTGAGTGCCATAGA........................................................2023.5070300001030
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTC.......................................................2323.0060000003030
................................................................................................TCTAGTTCATAAGTCTGTTGAGTGC..............................................................2523.0060000000060
....................................................................TATGGCACACAGTTGATTTATAAA...........................................................................................2433.0090100000080
.........................................................................................................TAAGTCTGTTGAGTGCCATAGG........................................................2223.0060100102020
.........................................................................................................TAAGTCTGTTGAGTGCCATAGACTG.....................................................2523.0060000000060
.........................................................................................................TAAGTCTGTTGAGTGCCATAT.........................................................2133.0090000003060
.........................................................................................................TAAGTCTGTTGAGTGCCATTTT........................................................2242.75110200000090
.........................................................................................................TAAGTCTGTTGAGTGCCATTCT........................................................2222.5050200001020
.........................................................................................................TAAGTCTGTTGAGTGCC.............................................................1722.5050000000050
...........................................................................................TATTTTCTAGTTCATAAGTCTGT.....................................................................2332.3370000000070
....................................................................TATGGCACACAGTTGATTTATC.............................................................................................2232.3370000001060
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTTA......................................................2422.0040000001030
...........................................................................................TATTTTCTAGTTCATAAGTCTGTTGAG.................................................................2732.0060000000060
.........................................................................................................TAAGTCTGTTGAGTGCCATAGCC.......................................................2322.0040000000040
.........................................................................................................TAAGTCTGTTGAGTGCCATAGATG......................................................2422.0040000000040
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAC.......................................................2321.5030100001010
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTCA......................................................2421.5030000001020
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAT......................................................2421.5030000001020
..........................................................................................................AAGTCTGTTGAGTGCCATAGAAA......................................................2321.5030100000020
..........................................................................................................AAGTCTGTTGAGTGCCATAGAA.......................................................2221.5030000001020
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAG......................................................2421.5030000000030
.........................................................................................................TAAGTCTGTTGAGTGCCATCCC........................................................2221.5030000000030
..........................................................................................................AAGTCTGTTGAGTGCCATA..........................................................1921.5030000000030
...............................................................................................TTCTAGTTCATAAGTCTGTTGAGTGC..............................................................2621.5030000001020
..................................................................................................TAGTTCATAAGTCTGTTGAGTGC..............................................................2321.5030000000030
.........................................................................................................TAAGTCTGTTGAGTGCCATATT........................................................2231.3340000000040
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTTT......................................................2431.3340000000040
.........................................................................................................TAAGTCTGTTGAGTGCCATCTG........................................................2231.0030000000030
............................................................................................................GTCTGTTGAGTGCCATAGA........................................................1921.0020000010010
.....................................................................ATGGCACACAGTTGATTTATAAAT..........................................................................................2431.0030000000030
........................................................................................................ATAAGTCTGTTGAGTGCCATAG.........................................................2221.0020000000020
..............................................................................................TTTCTAGTTCATAAGTCTGTTGA..................................................................2331.0030000000030
.........................................................................................................TAAGTCTGTTGAGTGCCATAAT........................................................2221.0020000000020
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTA.......................................................2321.0020000000020
..............................................................................................TTTCTAGTTCATAAGTCTGTTGAGTGC..............................................................2721.0020000000020
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAAAC.....................................................2521.0020000000020
...................................................................ATATGGCACACAGTTGATTTATA.............................................................................................2331.0030000000030
.........................................................................................................TAAGTCTGTTGAGTGCCATAGACG......................................................2421.0020000000020
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAGA......................................................2421.0020000000020
......................................................................................................TCATAAGTCTGTTGAGTGCCATA..........................................................2321.0020000000020
......................................................................................................TCATAAGTCTGTTGAGTGCCATAG.........................................................2421.0020000000020
....................................................................TATGGCACACAGTTGATTT................................................................................................1930.6720100001000
....................................................................TATGGCACACAGTTGATTTATATTA..........................................................................................2530.6720000000020
....................................................................TATGGCACACAGTTGATTTAA..............................................................................................2130.6720000000020
....................................................................TATGGCACACAGTTGATTTATCA............................................................................................2330.6720000000020
....................................................................TATGGCACACAGTTGATT.................................................................................................1830.6721000000010
.........................................................................................................TAAGTCTGTTGAGTG...............................................................1530.6720000000020
.........................................................................................................TAAGTCTGTTGAGTGCCATCT.........................................................2130.6720000000020
....................................................................TATGGCACACAGTTGATTTATATTATC........................................................................................2730.6720000000020
...................................................................ATATGGCACACAGTTGATTTAT..............................................................................................2230.6720100001000
...........................................................................................TATTTTCTAGTTCATAAGTCTGTA....................................................................2430.6720000000020
.........................................................................................................TAAGTCTGTTGAGTGCCATCCT........................................................2220.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATAGCTA......................................................2420.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAGT......................................................2420.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATCCG........................................................2220.5010000000010
..................................................................................................TAGTTCATAAGTCTGTTGAGTGCCA............................................................2520.5010000000010
..........................................................................................................AAGTCTGTTGAGTGCCATAGG........................................................2120.5010100000000
.........................................................................................................TAAGTCTGTTGAGTGCCATCC.........................................................2120.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTCG......................................................2420.5010000001000
.........................................................................................................TAAGTCTGTTGAGTGCCATAGAGTCT....................................................2620.5010000000010
...............................................................................................................TGTTGAGTGCCATAG.........................................................1520.5010000000010
..........................................................................................................AAGTCTGTTGAGTGCCATAGTT.......................................................2220.5010100000000
.........................................................................................................TAAGTCTGTTGAGTGCCATAGTCT......................................................2420.5010000000010
.................................................................................................CTAGTTCATAAGTCTGTTGAGTGC..............................................................2420.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATG..........................................................2020.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATGA.........................................................2120.5010000000010
.................................................................................................CTAGTTCATAAGTCTGTTGAGTGCCA............................................................2620.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGC..............................................................1620.5010000000010
...........................................................................................................AGTCTGTTGAGTGCCATAGATA......................................................2220.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATAATA.......................................................2320.5010000000010
..............................................................................................................CTGTTGAGTGCCATAG.........................................................1620.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATAGCT.......................................................2320.5010000000010
.............................................................................................................TCTGTTGAGTGCCATAGA........................................................1820.5010000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATAC.........................................................2120.5010000001000
.........................................................................................................TAAGTCTGTTGAGTGCCATAGGA.......................................................2320.5010000001000
........................................................................................................ATAAGTCTGTTGAGTGCCATAGA........................................................2320.5010000000010
........................................................................................................ATAAGTCTGTTGAGTGCCATAGAAA......................................................2520.5010000000010
................................................................................................TCTAGTTCATAAGTCTGTTGAGTGCC.............................................................2620.5010000001000
......................................................................TGGCACACAGTTGATTTATAA............................................................................................2130.3310000000010
...............................................................................................TTCTAGTTCATAAGTCTGTTG...................................................................2130.3310000000010
.....................................................................ATGGCACACAGTTGATTTATAT............................................................................................2230.3310000000010
....................................................................TATGGCACACAGTTGATTTATATTATTT.......................................................................................2830.3310000000010
.........................................................................................................TAAGTCTGTTGAGTGCCATATG........................................................2230.3310000000010
.....................................................................ATGGCACACAGTTGATTTATC.............................................................................................2130.3310100000000
...................................................................ATATGGCACACAGTTGATTTATATTAT.........................................................................................2730.3310000000010

Generated: 05/17/2015 at 07:59 PM