ID:

dpe_346

 Coordinate:

scaffold_0:1199810-1199960 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.9 -16.8 -16.8 -16.7

Flybase annnotation

CDS [Dper\GL23689-cds]; exon [dper_GLEANR_6021:1]; intron [Dper\GL23689-in]

No Repeatable elements found

Sense Strand Reads

-------------------------------###################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGCTCTGCCAATTGCCGGCCCTGTGGGTGGATGGGTGGTTTGGGTGCTAGTGGGTGCAGCTGTCGAGAGCTTTGCAGTGGGTGTGTTCTGGTGGAACCAGAACCTGACCTGGCTGAAATTGTTCAAACTCTTTTGTGTTACCCAATTCGATTTACACATTTGTTTATTGTTTAACAAAATTGTTTGTATTTCATTTTGGAGAGCCAACGGCATAGGGAAAACTTTTAATTAAAGTGCCGAACGCCAGCAA
************************************************************......((............(((..((((((((...))))))))...)))...))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M021
embryo
 M042
female body
 V057
head
 V042
embryo
 V050
head
............................................................CTGTCGAGAGCTTTGCAGTGGG......................................................................................................................................................................... 22 0 1 4.00 4 0 4 0 0 0 0
................................................................................................ACCAGAACCTGACCTGGCT........................................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0
...................................GTGGTTTGGGTGGAAGTGGGT................................................................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGGGTGCAGCTGTCGAGAGC.................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
....................................................GGGTGCAGCTGTCGAGAGC.................................................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0
.....................................GGTTTGGGTGCTAGTGGGTGCAGCT............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0
...........................GTGGATGGGTGGTTTGGGTGCTA......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0
.................................GGGTGGTTTGGGTGCTAGT....................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................ACATTTGTTTATTGTTTAACA.......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...................................GTGGTTTGGGTGCTAGTGG..................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.........CAATTGCCGGCCCTGTGGGTGGATGGGT...................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
................CGGCACGGTGGGTAGATGGGT...................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0
......................TGTGGGTGGATGGGTGGTTTGGGTGC........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........AATTGCCGGCCCTGTGGGT.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0
................................................TAGGGGGTGTAGCTGTCGCGAG..................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0
.....................CTGTGGGTGGATGGGTGGTTTGGG.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................AATTCGATGTACACATTTGT....................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.......................................TTTGGGTTCTGGTGGGTG.................................................................................................................................................................................................. 18 2 17 0.82 14 0 0 0 14 0 0
.......................................TTTGGGTGCTGGTGGGTG.................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 1 0 0
..........................GTTGGAGGGGTGGTTTGGGT............................................................................................................................................................................................................. 20 2 5 0.20 1 1 0 0 0 0 0
.......................................TTTGGGTGCTGGTGGGTGT................................................................................................................................................................................................. 19 2 11 0.18 2 0 0 0 2 0 0
..............................................................................................GAACCAGAACCTGATGTGCC......................................................................................................................................... 20 3 13 0.15 2 0 2 0 0 0 0
................TGGCCCTGTGGTTCGATGGGT...................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0
........................................................................TGGCAGTGTGTGTGGTCTGGT.............................................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 1
........................................TTGGGTCCTAGTGGGCGCTG............................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
........................................TTGGGTGCTGGCGGGTGC................................................................................................................................................................................................. 18 2 10 0.10 1 0 0 0 1 0 0
........................................TTGGGTTCTGGTGGGTGCTGC.............................................................................................................................................................................................. 21 3 15 0.07 1 0 0 0 1 0 0
.......................................TTTCGGTGCTGGTGGGTGTA................................................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 1 0 0
...............................ATGGGTGGTTTGGGTTGT.......................................................................................................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0
.................................GGGTGGTTTGGGTGTTGG........................................................................................................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0 0
..............GCCGAACCTGTGGGTGCAT.......................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
................CGGCGCAGTGGGTGGATGGA....................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GACGAGACGGTTAACGGCCGGGACACCCACCTACCCACCAAACCCACGATCACCCACGTCGACAGCTCTCGAAACGTCACCCACACAAGACCACCTTGGTCTTGGACTGGACCGACTTTAACAAGTTTGAGAAAACACAATGGGTTAAGCTAAATGTGTAAACAAATAACAAATTGTTTTAACAAACATAAAGTAAAACCTCTCGGTTGCCGTATCCCTTTTGAAAATTAATTTCACGGCTTGCGGTCGTT
****************************************************************************************************************************************......((............(((..((((((((...))))))))...)))...))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V057
head
........................................................................................GACCACCTTGGTCATGGT................................................................................................................................................. 18 2 13 0.08 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_0:1199760-1200010 - dpe_346 CTGCTCTGCCAATTGCCGGCCCTGTGGGTGGATGGG-TGGTTTGGGTGCTAGTGGGTGCAGCTGTCGAGAGCTTTGCAGTG------GGTGTGTTCTGGTGGAACCA-----------------------------------------------GAACCT-GACCT-GGCTGAAATTGTTCAAA------CTC-TTTTGTGTTACCC-AATTCGATTTACACATTTGTTT--ATTGTTTAA-CAAAATTGTTT-GTATTT------------CATTTTGGAGAG--CCAACG-------------------GCATAGGGAAAACT-TTTAATTAAAGTGCCGAACGC-----CAGCAA-
dp5 2:7336736-7336982 - CTGC-----CAATTGCCGGCCCTGTGGGTGGATGGGATGGTTTGGGTGCTAGTGGGTGCAGCTGTCGAGAGCTTTGTAGTG------GGTGTGTTCTGGTGGAACCA-----------------------------------------------GAACCT-GACCT-GGCTGAAATTGTTCAAA------CTC-TTTTGTGTTGCCC-AATTCGAATTACACATTTGTTT--ATTGTTTAA-CAAAATTGTTT-GTATTT------------CATTTTGGAGAG--CCAACG-------------------GCATAGGGAAAACT-TTTAATTAAAGTGCCGAATGC-----CAGCAA-
droMoj3 scaffold_6473:7466255-7466291 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCATTGGCTGGCGTGTC-----------------------------------------------------------------------------------------------------------------GA---TCGTC----AGGTGG-
droAna3 scaffold_13340:958966-959180 - ATCCGCATCCGCATCCACGCCTGCAATCTGTAGCGG-CAGCACCGCCGCCGCTAAG---AGCCCACAGAAGCACTGAGGTGGTGC--AGCGTGGTTCAGCGGAGTTG-----TGT------------------------------------------CTCTGTTTTGGGCTGGTATTCTTTGAT------TCCCTTCTAATTTGTCAAAATTTAATGTACATTTTTATTT--TCTCTTAAT-CGGAGAA--GA---------------------------------------------GAAGAGGAAAAATTAATTG-AAACACC----------------------------------
droKik1 scf7180000302810:234573-234608 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCGATTTTCATAATTGTTT--ATTGTTTGC-CCAAA----------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453800:2214340-2214565 + G--A-----CAA-----------ATGG-------TG------------------------------------------------T--GG-TTGCGTGGGTGGTGCTG-----CTCC-----------TT--AGACTGCCA-AA-CAGAAAAGAAAAACCA------------AAC--------AAGTTCCAT--TTTTATGTTGCCAAAATTCAATTTGCATATTTGTTA--ACTGTTTAA-CTGAATCGTTAAAAATTTT--TGTTTTCGACACTTTGAAC-GAACCAAAAAAAATTGTTTAGTGCAAATTAATTG-AAAAACTTTTTAATTAAGTTCCACAGTGT-----CAGC---
droEle1 scf7180000491080:96521-96668 - T------------------------GGGTGG-------------------------------------------------------------GGCGGTGTGGTGCTG-----CTCCTGCTCCTGCTCTT--AGACTGCTCAAA-----------------------------AAT--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTTGCATATTTGTTT--ATTGTTTAA-CTGAATCGTTC-AAATTCC--TGTTCTCGACATTTCCA---------------------------------------------------------------------AA-----CG-
droRho1 scf7180000768822:70199-70403 - CA---------------------GTGGGTGGTTGTG-----------------------------------------------------------TGGGTGGTGCGGTGCTGCT---T---------TT--AGACTGCCCAGA-----------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTTGCATATTTGTTT--ATTGTTTAA-CTGAATCGTTT-AAATTTT--TGTTTTCGACATTTCCAAC-GAA-----GCAATTCGTTTAGTGCAAATTAATTG-AAAAACTTTTTAATTACAT-CC---CAGCC----CAGCAG-
droBia1 scf7180000302402:8219111-8219303 + G--------------------------GTTGAT---------------------------------------------------T--GG-TTGGTTGGGTGGTGCCG-----CCCCCA---TTTCCCATCGACACTGTTCCA-----------------------------------------AAGTTCCATC-TTTTCTGTTGCCAAAACTCGATTTGCTTAATTGTTTTCATTGTTTT--------------AAATTCC--TGTTTTTCACATTTCGACC-GCT-----AAAATCTGTTTAGTCAAAATTAATTG-ATAAACTTTTTAATTAAAT-CC---C--------CAGGGA-
droTak1 scf7180000415811:38405-38559 - T------------------------TGGTGGTT------------------------------------------------------GG-GTGATTGGGTGGTGCTG-----CAT--A---TTTCCCAT--AGACTGCCCGAA-A---------------------------AAC--------GAGTTCCATC-TTTTATGTTGCCAAAATTCGATTTGCATATTTGTTTTTATTTTTT---TTAAATT-TTT-AAATTC----------T--------------A-----AAAATTTGTTGAGTGAAAAT---------------------------CC--------------CCAA-
droEug1 scf7180000409881:528557-528788 - G--C-----CAA------GTTATTTGGTTGGTGG-G--------------------TG--------------------------TGACCTGTGTGTGGGTGGTGCTG-----CTTTT------TATTTT--AGACTGCCCAAA-----------------------------ACC--------AAGTTCCATTTTTTTATGTTGCCAAAATTCGATTTGCATATCTGTTT--ATTGTTTAAACTGAAGCTTTTAAAATTTCTATGTTTTTGTCATTTTGAAG-GCA-----AAAATTCGTTTAGTGCAAATTAATTG-AAAAACTTTTTAATTAAAT-CC---TAGCG----GAGCTGA
dm3 chr3R:6128032-6128210 + C---------AA-----------GTGGGTGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CTCCTA---------TT--AGACTGCCCAAAAA---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACTTTTTAATTAACT-GC-GCCAGC-----CAGCCA-
droSim2 3r:14938292-14938469 - A----------------------GTGGGTGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CTCCTA---------TT--AGACTGCCCAAA-A---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACT-TTTAATTAACT-GC---CAGCCAGACGAGCAG-
droSec2 scaffold_0:15804004-15804181 - G-----------------------TGGGTGGTGGTG------------------------------------------------T--AG-GTGGCTGGTTGGTGCTG-----CTCCTA---------TT--AGACTGCCCAAA-A---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACTTTTTAATTAACT-GC---CAGCCAGACGAGCAG-
droYak3 3R:10164368-10164541 + G--C-----CAA------GCCAAGTGGGTGGTTGTG-----------------------------------------------------------TAGGTGGTGCTG-----CTCCTA---------TT--AGACTGGCCAAA-C---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACT--TAAATTAACT-GA---CAGCC----GAGCAG-
droEre2 scaffold_4770:15478693-15478866 - A----------------------GTGGGTGGTTGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CTCCTA---------TT--AGACTGGCCAAA-C---------------------------AAC--------AAGTTCCAT--TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTT--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------CGCTATCTAATTG-AAAAACTTTTTAATTAACT-GC---CAGCC----GAGCAG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTGCTCTGCCAATTGCCGGCCCTGTGGGTGGATGGG-TGGTTTGGGTGCTAGTGGGTGCAGCTGTCGAGAGCTTTGCAGTG------GGTGTGTTCTGGTGGAACCA-----------------------------------------------GAACCT-GACCT-GGCTGAAATTGTTCAAA------CTC-TTTTGTGTTACCC-AATTCGATTTACACATTTGTTT--ATTGTTTAA-CAAAATTGTTT-GTATTT------------CATTTTGGAGAG--CCAACG-------------------GCATAGGGAAAACT-TTTAATTAAAGTGCCGAACGC-----CAGCAA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................CTGTCGAGAGCTTTGCAGTG------GG..............................................................................................................................................................................................................................................................................2214.004400000
.......................................................................................................ACCA-----------------------------------------------GAACCT-GACCT-GGCT............................................................................................................................................................................................1912.002200000
...................................................GTGGGTGCAGCTGTCGAGAGC...............................................................................................................................................................................................................................................................................................2112.002000002
.....................................................GGGTGCAGCTGTCGAGAGC...............................................................................................................................................................................................................................................................................................1912.002020000
......................................GGTTTGGGTGCTAGTGGGTGCAGCT........................................................................................................................................................................................................................................................................................................2511.001010000
...........................GTGGATGGG-TGGTTTGGGTGCTA....................................................................................................................................................................................................................................................................................................................2311.001001000
.................................GGG-TGGTTTGGGTGCTAGT..................................................................................................................................................................................................................................................................................................................1911.001000001
............................................................................................................................................................................................................................ACATTTGTTT--ATTGTTTAA-CA...................................................................................................................2111.001100000
...................................G-TGGTTTGGGTGCTAGTGG................................................................................................................................................................................................................................................................................................................1911.001010000
.........CAATTGCCGGCCCTGTGGGTGGATGGG-T.................................................................................................................................................................................................................................................................................................................................2811.001000001
......................TGTGGGTGGATGGG-TGGTTTGGGTGC......................................................................................................................................................................................................................................................................................................................2611.001000001
..........AATTGCCGGCCCTGTGGGT..........................................................................................................................................................................................................................................................................................................................................1911.001010000
.....................CTGTGGGTGGATGGG-TGGTTTGGG.........................................................................................................................................................................................................................................................................................................................2411.001000001
dp5
CTGC-----CAATTGCCGGCCCTGTGGGTGGATGGGATGGTTTGGGTGCTAGTGGGTGCAGCTGTCGAGAGCTTTGTAGTG------GGTGTGTTCTGGTGGAACCA-----------------------------------------------GAACCT-GACCT-GGCTGAAATTGTTCAAA------CTC-TTTTGTGTTGCCC-AATTCGAATTACACATTTGTTT--ATTGTTTAA-CAAAATTGTTT-GTATTT------------CATTTTGGAGAG--CCAACG-------------------GCATAGGGAAAACT-TTTAATTAAAGTGCCGAATGC-----CAGCAA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................T------------CATTTTGGAGAG--CCAACG-------------------GC..............................................2111.0010100000000
....................................................................................................................................................................................................................................................................................TTGGAGAG--CCAACG-------------------GCATAGGGAAAA....................................2611.0010100000000
.................................................................................................GGTGGAACCA-----------------------------------------------GAACCT-GACCT-GGC.............................................................................................................................................................................................2411.0010000000001
..................................................AGTGGGTGCAGCTGTCGAGAGC...............................................................................................................................................................................................................................................................................................2211.0010100000000
...........ATTGCCGGCCCTGTGGGTGGATGGG...................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.TGC-----CAATTGCCGGCCCTGTGGGT..........................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droMoj3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCATTGGCTGGCGTGTC-----------------------------------------------------------------------------------------------------------------GA---TCGTC----AGGTGG-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droAna3
ATCCGCATCCGCATCCACGCCTGCAATCTGTAGCGG-CAGCACCGCCGCCGCTAAG---AGCCCACAGAAGCACTGAGGTGGTGC--AGCGTGGTTCAGCGGAGTTG-----TGT------------------------------------------CTCTGTTTTGGGCTGGTATTCTTTGAT------TCCCTTCTAATTTGTCAAAATTTAATGTACATTTTTATTT--TCTCTTAAT-CGGAGAA--GA---------------------------------------------GAAGAGGAAAAATTAATTG-AAACACC----------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................AAG---AGCCCACAGAAGCACTGAGGT.......................................................................................................................................................................................................................................................................................2411.001000001
......ATCCGCATCCACGCCTGC...............................................................................................................................................................................................................................................................................................................................................1811.001010000
......................................................AG---AGCCCACAGAAGCACTGAGGTGGG....................................................................................................................................................................................................................................................................................2611.001001000
..................................................................................................................T------------------------------------------CTCTGTTTTGGGCTGGT.........................................................................................................................................................................................1820.501100000
droKik1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCGATTTTCATAATTGTTT--ATTGTTTGC-CCAAA----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
G--A-----CAA-----------ATGG-------TG------------------------------------------------T--GG-TTGCGTGGGTGGTGCTG-----CTCC-----------TT--AGACTGCCA-AA-CAGAAAAGAAAAACCA------------AAC--------AAGTTCCAT--TTTTATGTTGCCAAAATTCAATTTGCATATTTGTTA--ACTGTTTAA-CTGAATCGTTAAAAATTTT--TGTTTTCGACACTTTGAAC-GAACCAAAAAAAATTGTTTAGTGCAAATTAATTG-AAAAACTTTTTAATTAAGTTCCACAGTGT-----CAGC---SizeHit CountTotal NormTotal
No Reads
droEle1
T------------------------GGGTGG-------------------------------------------------------------GGCGGTGTGGTGCTG-----CTCCTGCTCCTGCTCTT--AGACTGCTCAAA-----------------------------AAT--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTTGCATATTTGTTT--ATTGTTTAA-CTGAATCGTTC-AAATTCC--TGTTCTCGACATTTCCA---------------------------------------------------------------------AA-----CG-SizeHit CountTotal NormTotal
No Reads
droRho1
CA---------------------GTGGGTGGTTGTG-----------------------------------------------------------TGGGTGGTGCGGTGCTGCT---T---------TT--AGACTGCCCAGA-----------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTTGCATATTTGTTT--ATTGTTTAA-CTGAATCGTTT-AAATTTT--TGTTTTCGACATTTCCAAC-GAA-----GCAATTCGTTTAGTGCAAATTAATTG-AAAAACTTTTTAATTACAT-CC---CAGCC----CAGCAG-SizeHit CountTotal NormTotal
No Reads
droBia1
G--------------------------GTTGAT---------------------------------------------------T--GG-TTGGTTGGGTGGTGCCG-----CCCCCA---TTTCCCATCGACACTGTTCCA-----------------------------------------AAGTTCCATC-TTTTCTGTTGCCAAAACTCGATTTGCTTAATTGTTTTCATTGTTTT--------------AAATTCC--TGTTTTTCACATTTCGACC-GCT-----AAAATCTGTTTAGTCAAAATTAATTG-ATAAACTTTTTAATTAAAT-CC---C--------CAGGGA-SizeHit CountTotal NormTotal
No Reads
droTak1
T------------------------TGGTGGTT------------------------------------------------------GG-GTGATTGGGTGGTGCTG-----CAT--A---TTTCCCAT--AGACTGCCCGAA-A---------------------------AAC--------GAGTTCCATC-TTTTATGTTGCCAAAATTCGATTTGCATATTTGTTTTTATTTTTT---TTAAATT-TTT-AAATTC----------T--------------A-----AAAATTTGTTGAGTGAAAAT---------------------------CC--------------CCAA-SizeHit CountTotal NormTotal
No Reads
droEug1
G--C-----CAA------GTTATTTGGTTGGTGG-G--------------------TG--------------------------TGACCTGTGTGTGGGTGGTGCTG-----CTTTT------TATTTT--AGACTGCCCAAA-----------------------------ACC--------AAGTTCCATTTTTTTATGTTGCCAAAATTCGATTTGCATATCTGTTT--ATTGTTTAAACTGAAGCTTTTAAAATTTCTATGTTTTTGTCATTTTGAAG-GCA-----AAAATTCGTTTAGTGCAAATTAATTG-AAAAACTTTTTAATTAAAT-CC---TAGCG----GAGCTGASizeHit CountTotal NormTotal
No Reads
dm3
C---------AA-----------GTGGGTGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CTCCTA---------TT--AGACTGCCCAAAAA---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACTTTTTAATTAACT-GC-GCCAGC-----CAGCCA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGG.................................................................................................................................................................................................................................................................23141.00410000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010001020000000000000000000000000000000000000000000000000000000000000020001000220000000000000000000000000000000000010000000011024100000000000000000002000000010102000110200002101012100
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGT...................................................................................................................................................................................................................................................................21120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300001100100000000000000000000000000000000100000000000000001000000000000000000000000000121000001100110000020000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGTG..................................................................................................................................................................................................................................................................22110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000001000100000001001000100000000010000000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGT.................................................................................................................................................................................................................................................................23110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000301100000000000000000000000000001000000000000010010000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGG.....................................................................................................................................................................................................................................................................1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000012030
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGG....................................................................................................................................................................................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010101000100010010
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGGT................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001100000010001001000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGG.....................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000010000000000000000000000
............................................................................................................................................................................................................................................................................TC---ACTTT--------------------------TGCTATTTAATTG-AAAAAC...................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGGG....................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGGGT...................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000010000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGGGTG..................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
......................................................................................................................................................................................................ATGTTGCCAAAATTCGATTAGCAT.........................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTGGGTGGATGTG------------------------------------------------T--AG-GTGG.........................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGG.................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGT.................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGA.................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000
....................................................................................................................................................................................................................................................................................TT--------------------------TGCTATTTAATTG-AAAAACTTTTT..............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTCGATTAGCATATCTGTTC--GTTGTT.........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTAATTG-AAAAACTTTTTAATTAAC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AA-----------GTGGGTGGATGTG------------------------------------------------T--AG-GTG..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................GATTAGCATATCTGTTC--GT.............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGGT................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................TGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGC..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGT....................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ACTTT--------------------------TGCTATTTAATTG-AAAAACTTTT...............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GATGTG------------------------------------------------T--AG-GTGGCTGGGTGG.................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................GCTATTTAATTG-AAAAACTTTTTAA............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTC--GTTGTTTAA---------------ATACT--TGTTTTC---AC....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TATCTGTTC--GTTGTTTAA---------------ATACT--TGTT............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TTT--------------------------TGCTATTTAATTG-AAAAACTTTT...............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AA-----------GTGGGTGGATGTG------------------------------------------------T--AG-GT...........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAAC...................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTG-AAAAACTTTTTAATTAACT-GC-GC................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGGGTGGTGCTG-----CTCCTA---------TT--AGAC................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................T--AGACTGCCCAAAAA---------------------------AAC--------................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGGGTGGATGTG------------------------------------------------T--AG-GTGGCTGGG....................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................G-----CTCCTA---------TT--AGACTGCCCAAA........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................T--------------------------TGCTATTTAATTG-AAAAAC...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GGATGTG------------------------------------------------T--AG-GTGGCTGGGT...................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................T--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AA.......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGTGGA................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................CT--TGTTTTC---ACTTT--------------------------TGCTATTTAATT...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................G------------------------------------------------T--AG-GTGGCTGGGTGGTGC..............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTG-AAAAACTTTTTAATTAACT-GC-GCCAG.............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................TG-----CTCCTA---------TT--AGACTGCCCAAAA.......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATTCGATTAGCATATCTGTTC--GTTGTT.........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATT................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GGATGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCT.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................T-TTTTATGTTGCCAAAATTCGATTAGC...........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................GCTGGGTGGTGCTG-----CTCCTA---------T.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTAATTAACT-GC-GCCAGC-----.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TT--AGACTGCCCAAAAA---------------------------AAC--------AAGTTC..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CT.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TCCATT-TTTTATGTTGCCAAAATTCGA................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGTTGCCAAAATTCGATTAGCA..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................GATTAGCATATCTGTTC--GTTGTTT........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTGGATGTG------------------------------------------------T--AG-GTGGCT.......................................................................................................................................................................................................................................................................1820.5010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGGGCTT.................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................TGGATGTG------------------------------------------------T--AG-GTGGCTGT.....................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................TATTTAATTG-AAAAACTTTT...............................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A----------------------GTGGGTGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CTCCTA---------TT--AGACTGCCCAAA-A---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACT-TTTAATTAACT-GC---CAGCCAGACGAGCAG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTG..................................................................................................................................................................................................................................................................2218.00800000060000011000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGG.................................................................................................................................................................................................................................................................2415.00500000003000002000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGG.................................................................................................................................................................................................................................................................2314.00400000010001011000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTGG.....................................................................................................................................................................................................................................................................2014.00400002000001001000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGG.....................................................................................................................................................................................................................................................................1914.00400000000000004000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGGT................................................................................................................................................................................................................................................................2413.00300001000001001000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTGGGT...................................................................................................................................................................................................................................................................2212.00200000001001000000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGGAA...............................................................................................................................................................................................................................................................2512.00200000010000001000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGT...................................................................................................................................................................................................................................................................2112.00200000000001001000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGG....................................................................................................................................................................................................................................................................2011.00100000000001000000
..........................................................................................................................................................................................................TGCCAAAATTCGATTAGCATATCTGTT..................................................................................................................................2711.00100000010000000000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTGGT....................................................................................................................................................................................................................................................................2111.00100000000000001000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGT.................................................................................................................................................................................................................................................................2311.00100000000000010000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGT.................................................................................................................................................................................................................................................................2411.00100000000001000000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGA.................................................................................................................................................................................................................................................................2311.00100000000000001000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGGTAAA.............................................................................................................................................................................................................................................................2811.00100000000000001000
...........................GTGGTGGTG------------------------------------------------T--AG-GTGGCTG......................................................................................................................................................................................................................................................................1911.00100000000000001000
...............................................................................................................................................................................................................AAATTCGATTAGCATATCTGTTC--GTTGTT.........................................................................................................................2911.00100010000000000000
...............................................................................................................................................................................................................................TCTGTTC--GTTGTTTAA---------------ATACT--TGT.............................................................................................2411.00110000000000000000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCTGGGTGGTT...............................................................................................................................................................................................................................................................2511.00100000001000000000
....................................................................................................................................................................................................................CGATTAGCATATCTGTTC--GT.............................................................................................................................2011.00101000000000000000
............................TGGTGGTG------------------------------------------------T--AG-GTGGCC.......................................................................................................................................................................................................................................................................1740.25100000000001000000
droSec2
G-----------------------TGGGTGGTGGTG------------------------------------------------T--AG-GTGGCTGGTTGGTGCTG-----CTCCTA---------TT--AGACTGCCCAAA-A---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACTTTTTAATTAACT-GC---CAGCCAGACGAGCAG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................GGTGGTG------------------------------------------------T--AG-GTGGCTGGTTGGT................................................................................................................................................................................................................................................................2312.0020200
.............................GGTGGTG------------------------------------------------T--AG-GTGGCTGGT....................................................................................................................................................................................................................................................................1911.0010100
...................................G------------------------------------------------T--AG-GTGGCTGGTTGGTGCT.............................................................................................................................................................................................................................................................2011.0010100
...........................................................................................................................................................................................................GCCAAAATTCGATTAGCATATCTGTTC--...............................................................................................................................2711.0010100
.......................................................................................................................................................................................................TGTTGCCAAAATTCGATTAGC...........................................................................................................................................2111.0010010
droYak3
G--C-----CAA------GCCAAGTGGGTGGTTGTG-----------------------------------------------------------TAGGTGGTGCTG-----CTCCTA---------TT--AGACTGGCCAAA-C---------------------------AAC--------AAGTTCCATT-TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTC--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------TGCTATTTAATTG-AAAAACT--TAAATTAACT-GA---CAGCC----GAGCAG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................TTAGCATATCTGTTC--GTTGT..........................................................................................................................2011.00101000000000
droEre2
A----------------------GTGGGTGGTTGTG------------------------------------------------T--AG-GTGGCTGGGTGGTGCTG-----CTCCTA---------TT--AGACTGGCCAAA-C---------------------------AAC--------AAGTTCCAT--TTTTATGTTGCCAAAATTCGATTAGCATATCTGTTT--GTTGTTTAA---------------ATACT--TGTTTTC---ACTTT--------------------------CGCTATCTAATTG-AAAAACTTTTTAATTAACT-GC---CAGCC----GAGCAG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................TT--GTTGTTTAA---------------ATACT--TGTTTTC---ACT...................................................................................2611.0010100000
.............................GGTTGTG------------------------------------------------T--AG-GTGGCTGGGT...................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................AT--TTTTATGTTGCCAAAATTCGATT..............................................................................................................................................2511.0010100000
....................................................................................T--AG-GTGGCTGGGTGGTGCTG-----CTC....................................................................................................................................................................................................................................................2311.0010000010
..........................................................................................................................................................................................................TGCCAAAATTCGATTAGCATATCTGTT..................................................................................................................................2711.0011000000

Generated: 06/08/2015 at 02:33 PM