ID:

dpe_33

 Coordinate:

scaffold_10997:745-820 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.8 -27.2 -27.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Nobel_I-intLTRPao-
Nobel_LTRLTRPao-
mature
  1. dpe_33  scaffold_10997:747-765 +
  2. scaffold_6833:597-615 +
star
  1. scaffold_774:8052-8074 +
  2. scaffold_155:92268-92290 +
  3. scaffold_119:62432-62454 +
  4. scaffold_72:35412-35434 +
  5. scaffold_72:39942-39964 +
  6. scaffold_78:89455-89477 +
  7. scaffold_53:152980-153002 +
  8. dpe_33  scaffold_10997:792-814 +
  9. scaffold_833:2418-2440 +
  10. scaffold_2562:1467-1489 +
  11. scaffold_3590:2032-2054 +
  12. scaffold_1100:6504-6526 +
  13. scaffold_1291:4091-4113 +
  14. scaffold_4143:1593-1615 +
  15. scaffold_2071:1758-1780 +
  16. scaffold_4584:1406-1428 +
  17. scaffold_2021:1909-1931 +
  18. scaffold_2291:2595-2617 +
  19. scaffold_8701:1177-1199 +
  20. scaffold_7136:659-681 +

Sense Strand Reads

TCACTGTCACTTTTTGCCTTCCACTTGAATTAATATGTACGTTTAAATTGCAGGTCCACCCGGGGGCGCCATGAAATTTTAGAATAGTTTTTCTAAATAACAATACCGAAATTTCTTGGGTGACTGCAATTTTTTATTTTAATACTGTGAGGAAAGGTATTCCCACACATAGGGGG
*************************************.......(((((((((...((((((((((((..((.....(((((((......))))))).....))..))....)))))))))).)))))))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total V050
head
 V057
head
 V111
male body		 M042
female body
 V042
embryo
 M021
embryo
....................................................GGTCCACCCGGGGGCGCCA......................................................................................................... 19 0 2 284.50 569 253 116 125 75 0 0
..................................................CGGGTCCACCCGGGGGCGCCA......................................................................................................... 21 1 20 121.10 2422 1923 0 63 426 10 0
.................................................TCGGGTCCACCCGGGGGCGCCA......................................................................................................... 22 2 20 8.50 170 0 0 131 0 39 0
..................................................CAGGTCCACCCGGGGGCGCCA......................................................................................................... 21 0 1 8.00 8 7 1 0 0 0 0
.................................................TCGGGTCCGCCCGGGGGCGCCA......................................................................................................... 22 3 20 6.10 122 4 0 0 118 0 0
.................................................TCAGGTCCACCCGGGGGCGCCA......................................................................................................... 22 1 2 4.00 8 7 1 0 0 0 0
...................................................AGGTCCACCCGGGGGCGCCA......................................................................................................... 20 0 1 3.00 3 1 0 1 1 0 0
...................................................CGGTCCACCCGGGGGCGCCA......................................................................................................... 20 1 20 2.50 50 35 0 0 15 0 0
....................................................GGTCCACCCGGGGGCGCC.......................................................................................................... 18 0 2 2.00 4 0 2 0 2 0 0
...............................................GTTCAGGTCCACCCGGGGGCGCCA......................................................................................................... 24 2 2 1.50 3 3 0 0 0 0 0
.................................................TCGGGTCCTCCCGGGGGCGCCA......................................................................................................... 22 3 20 1.25 25 0 2 0 23 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGATGT................ 21 3 7 1.00 7 0 2 5 0 0 0
................................................TTCAGGTCCACCCGGGGGCGCCA......................................................................................................... 23 1 2 1.00 2 1 0 1 0 0 0
...................................................AGATCCACCCGGGGGCGCCA......................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
................................................TTCGGGTCCACCCGGGGGCGCCA......................................................................................................... 23 2 20 1.00 20 0 0 0 20 0 0
....................................................GATCCACCCGGGGGCGCCA......................................................................................................... 19 1 2 1.00 2 0 1 1 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGGTTTT............... 22 3 3 1.00 3 0 3 0 0 0 0
..................................................CAGGTCCACCCGCGTGCACCA......................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0
....................................................GGTCCACCCGGGGGCGCCAT........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
....................................................GGTCCACCCGGGGGCGCGA......................................................................................................... 19 1 2 1.00 2 1 1 0 0 0 0
...................................................AGGTCAACCCTGGGGCGCCA......................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0
....................................................GGTCCACCCGGGGGCGCCG......................................................................................................... 19 1 3 1.00 3 1 1 0 1 0 0
..................................................CCGGTCCACCCGGGGGCGCCA......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTGAGGAAAAGATTTC.............. 23 3 3 1.00 3 0 3 0 0 0 0
...........................................................................................................................................TAATACTGTCTGGAAAGGTGTT............... 22 3 2 1.00 2 0 2 0 0 0 0
..................................................CAGGTCAACCCGGGGGCCCCA......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
....................................................GGTCCACCAGGGGGCGCCA......................................................................................................... 19 1 2 1.00 2 1 1 0 0 0 0
..................................................CAGGTCCCCACGGGGGCGCCA......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.................................................TCGGGGCCACCCGGGGGCGCCA......................................................................................................... 22 3 20 0.95 19 0 19 0 0 0 0
.................................................GCGGGTCCACCCGGGGGCGCCA......................................................................................................... 22 1 20 0.75 15 2 0 0 13 0 0
....................................................GGTCCACCCGAGGGCGCCA......................................................................................................... 19 1 3 0.67 2 1 1 0 0 0 0
....................................................GGTCCACCCGCGGGCGCCA......................................................................................................... 19 1 3 0.67 2 1 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGTTTTC.............. 23 3 3 0.67 2 0 2 0 0 0 0
....................................................GGTCCACCCGGGGGCGACA......................................................................................................... 19 1 3 0.67 2 2 0 0 0 0 0
....................................................GGTCCACCCGGCGGCGCCA......................................................................................................... 19 1 3 0.67 2 2 0 0 0 0 0
....................................................GGTCCGCCCGGGGGCGCCA......................................................................................................... 19 1 3 0.67 2 1 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGTTGTC.............. 23 3 3 0.67 2 1 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGTTGT............... 22 3 3 0.67 2 0 2 0 0 0 0
....................................................GGTCCACCCGGGGGCGCCC......................................................................................................... 19 1 8 0.63 5 4 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGGTTT................ 21 3 5 0.60 3 2 1 0 0 0 0
.................................................................................................TAACAATACCGAAATTTCTTGGG........................................................ 23 0 20 0.55 11 0 0 0 11 0 0
..................................................CGGGTACACCCGGGGGCGCCA......................................................................................................... 21 2 20 0.55 11 11 0 0 0 0 0
...........................................................................................................................................TAATACTGTTAGGAAAGGTTATC.............. 23 3 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGT.................. 19 2 4 0.50 2 0 2 0 0 0 0
....................................................GGTCCACTCGGGGGCGCCA......................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGGTGTTC.............. 23 3 2 0.50 1 0 1 0 0 0 0
....................................................GGGCCACCCGGGGGCGCCA......................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGGTGTT............... 22 3 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGTGGT............... 22 3 2 0.50 1 0 1 0 0 0 0
....................................................GGTCCACTTGGGGGCGCCA......................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
..................................................CCGGTCCACCCGCGGGCGCGA......................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0
.................................................TCAGGTCCACCCGGGCGCGCCA......................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
...............................................GGGCAGGTCCACCCGCGGGCGC........................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTTAGGAAAGGCTTTC.............. 23 3 2 0.50 1 0 1 0 0 0 0
..................................................CTGGTCCACCCGGCGGCGCCA......................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGTTTTCC............. 24 3 2 0.50 1 0 1 0 0 0 0
....................................................GGTCCACCCGTGGGCGCCA......................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0
..................................................CCGGTCCACCCGGGGGCGCCG......................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTGTGGGAAGGTTTTC.............. 23 3 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGCTTTC.............. 23 3 2 0.50 1 0 1 0 0 0 0
.................................................TCAGATCCACCCGTGGGCGCCA......................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
....................................................GGTCCACCCGGGCGCGCCA......................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAATGTTTTC.............. 23 3 2 0.50 1 0 1 0 0 0 0
....................................................GGTCCACCTGGGGGCGCCA......................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGTGTC............... 22 3 2 0.50 1 0 1 0 0 0 0
.................................................TCTGGTCCACCCGGGGGCGCCA......................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0
...................................................AGGGCCACCCGGGGGCGTCA......................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGATA................. 20 3 4 0.50 2 0 0 2 0 0 0
....................................................GGTCCACCCGGGGGGGCCA......................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0
..................................................TTGGTCCACCCGGGGGCGCCA......................................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0
....................................................GGTCCACCCGGGGGCACCA......................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0
..................................................CTGGTCCACCCCGGAGCGCCA......................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
....................................................GGTCCACCCAGGGGCGCCA......................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
...................................................AGGTCCGCCCGGGGGCGCCA......................................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTTAGGTAAGGTTTTC.............. 23 3 2 0.50 1 0 1 0 0 0 0
....................................................GGACCACCCGGGGGCGCCA......................................................................................................... 19 1 7 0.43 3 1 2 0 0 0 0
....................................................GGTCCACCCGGAGGCGCCA......................................................................................................... 19 1 5 0.40 2 1 0 1 0 0 0
..................................................CGGGTCCACCCGGGGGCGACA......................................................................................................... 21 2 20 0.40 8 8 0 0 0 0 0
....................................................GGTCCACCCGGGGGCGCCTTT....................................................................................................... 21 2 5 0.40 2 0 0 2 0 0 0
.....................................................................................................................................................AGGAAAGGTATTCCCACACATAGG... 24 0 20 0.40 8 0 0 0 8 0 0
.................................................TCGGGTCCACCCGGGGGCACCA......................................................................................................... 22 3 20 0.40 8 5 0 0 3 0 0
....................................................GGTCCACCCCGCGGCGCCA......................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGTAAAGGTGT................ 21 3 3 0.33 1 0 1 0 0 0 0
....................................................GGTCCACCCGGCCGCGCCA......................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTGAGGAAAAGCCTT............... 22 3 3 0.33 1 0 1 0 0 0 0
....................................................GGTCCACCCGGGTGCGCCA......................................................................................................... 19 1 3 0.33 1 0 0 1 0 0 0
....................................................GGTACACCCGGGGGCGCCA......................................................................................................... 19 1 3 0.33 1 0 0 0 1 0 0
..................................................CAGGTCCACCCGGGGACGACA......................................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGGTTTTC.............. 23 3 3 0.33 1 0 1 0 0 0 0
....................................................GGTCCACACGGGGGCGCCA......................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0
....................................................GGTCCCCCCGGGGGCGCCA......................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0
..................................................CAGGTCCACCCGGGGGCGCAC......................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGATGTTC.............. 23 3 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTGGGGAAAAGTTTT............... 22 3 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGTTG................ 21 3 3 0.33 1 1 0 0 0 0 0
....................................................GGTCCACCCGGGGGCGCCTTC....................................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGTTT................ 21 3 6 0.33 2 0 2 0 0 0 0
...........................................................................................................................................TAATACTGTGAGGAAAAGTTGTC.............. 23 3 3 0.33 1 0 1 0 0 0 0
....................................................GGTCCACCCGGGGGCGTT.......................................................................................................... 18 2 6 0.33 2 0 1 0 1 0 0
...........................................................................................................................................TAATACTGTGAGGAAAAGTTGT............... 22 3 6 0.33 2 0 2 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGAAGTC.............. 23 3 3 0.33 1 0 1 0 0 0 0
....................................................GGTCCACCCGGGGGCGCCAC........................................................................................................ 20 1 3 0.33 1 0 0 0 1 0 0
...........................................................................................................................................TAATACTGTCAGGAAACGTTT................ 21 3 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAATGTTTT............... 22 3 3 0.33 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAAGTATTC.............. 23 3 3 0.33 1 0 0 0 0 1 0
..................................................CAGGCACACCCGGGAGCGCCA......................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0
..................................................CTGGTCCACCCGGGGTCGCCA......................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0
..................................................CGGGTCCACACGGGGGCGCCA......................................................................................................... 21 2 20 0.30 6 6 0 0 0 0 0
................................................CTCGGGTCCACCCGGGGGCGCCA......................................................................................................... 23 3 20 0.30 6 3 0 0 3 0 0
..................................................CGGGTCCACCCGGGAGCGCCA......................................................................................................... 21 2 20 0.30 6 6 0 0 0 0 0
.................................................ACGGGTCCACCCGGGGGCGCCA......................................................................................................... 22 2 20 0.25 5 3 0 0 2 0 0
................................................TTCGGGTCCACCCGGAGGCGCCA......................................................................................................... 23 3 20 0.25 5 5 0 0 0 0 0
...........................................................................................................................................TAATACTGTGAGGAAAAGAAGTC.............. 23 3 4 0.25 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGAATTC.............. 23 3 4 0.25 1 0 0 0 0 0 1
...........................................................................................................................................TAATACTGTGAGGAAAAGTCGTC.............. 23 3 4 0.25 1 0 1 0 0 0 0
..................................................CGGGTCCAACCGGGGGCGCCA......................................................................................................... 21 2 20 0.25 5 4 1 0 0 0 0
....................................................GGACCACCCTGGGGCGCCA......................................................................................................... 19 2 8 0.25 2 0 2 0 0 0 0
...........................................................................................................................................TAATACTGTGAGGGAAAGTA................. 20 2 4 0.25 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGGCTT................ 21 3 4 0.25 1 0 1 0 0 0 0
.............................................................................................TAAATAACAATACCGAAATTTCTTGGG........................................................ 27 0 20 0.25 5 0 0 0 5 0 0
....................................................GGTCCACCCGGGGGCGCGG......................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0
....................................................GGTCCACCCGGGGGCGCCT......................................................................................................... 19 1 4 0.25 1 0 1 0 0 0 0
.................................................................................................TAACAATACCGAAATTTCTTGGGT....................................................... 24 0 20 0.25 5 0 0 0 5 0 0
..................................................CCGGTCCAACCGGGGGCGCCA......................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0
..................................................CAGGTCCATCCGGGGGCGGCC......................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTGAGGAAAAGATTT............... 22 3 4 0.25 1 0 1 0 0 0 0
....................................................GGTCCACCCGGGGTCGCCA......................................................................................................... 19 1 4 0.25 1 0 0 1 0 0 0
..................................................CGGGTCAACCCGGGGGCGCCA......................................................................................................... 21 2 20 0.25 5 2 3 0 0 0 0
.................................................TCAGGACCACCCGGGGGCGCCG......................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
...............................................TTTCGGGTCCACCCGGGGGCGCCA......................................................................................................... 24 2 20 0.20 4 2 0 1 1 0 0
.................................................TCGGGTCCACCCGGGGACGCCA......................................................................................................... 22 3 20 0.20 4 4 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGGAAGG................... 18 2 5 0.20 1 0 1 0 0 0 0
................................................TGCGGGTCCACCCGGGGGCGCCA......................................................................................................... 23 1 20 0.20 4 4 0 0 0 0 0
.................................................TCGGGTCCACCCGGAGGCGCCA......................................................................................................... 22 3 20 0.20 4 0 3 0 1 0 0
...............................................GTTCTGGTCCACCCGGGGGCGCCA......................................................................................................... 24 3 5 0.20 1 0 0 1 0 0 0
..................................................CCGCTCCACCCGGGTGCGCCA......................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAGATTTT............... 22 3 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGTTTT............... 22 3 5 0.20 1 0 1 0 0 0 0
....................................................GGTCCACCCGGTGGCGCCA......................................................................................................... 19 1 5 0.20 1 1 0 0 0 0 0
....................................................GGCCCACCCGGGGGCGCCA......................................................................................................... 19 1 5 0.20 1 1 0 0 0 0 0
....................................................GGTCCACCCGGGGGCGGCA......................................................................................................... 19 1 5 0.20 1 0 1 0 0 0 0
....................................................GGTCCACCCGCCGGCGCCA......................................................................................................... 19 2 5 0.20 1 0 1 0 0 0 0
..................................................CAGGGCCAGCCGGGTGCGCCA......................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
....................................................GGGCCATCCGGGGGCGCCA......................................................................................................... 19 2 5 0.20 1 0 1 0 0 0 0
....................................................GGTCCACCAGCGGGCGCCA......................................................................................................... 19 2 5 0.20 1 0 1 0 0 0 0
....................................................GGGCCACCCGGGGGCGCCT......................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAAAGTGT................ 21 3 6 0.17 1 1 0 0 0 0 0
....................................................GTTCCACGCGGGGGCGCCA......................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0
....................................................GGTCCAGCCGCGGGCGCCA......................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0
....................................................GGTCCACCCGGGGGCGCTT......................................................................................................... 19 2 6 0.17 1 0 0 0 1 0 0
....................................................GGCCCACCCCGGGGCGCCA......................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0
..................................................CGGCTCCACCCGGGGGCGCCA......................................................................................................... 21 2 20 0.15 3 1 2 0 0 0 0
..................................................CGGATCCACCCGGGGGCGCCA......................................................................................................... 21 2 20 0.15 3 1 0 2 0 0 0
..................................................CGGGTCCACTCGGGGGCGCCA......................................................................................................... 21 2 20 0.15 3 1 2 0 0 0 0
.................................................TCGGGTCCACCCGGGCGCGCCA......................................................................................................... 22 3 20 0.15 3 0 3 0 0 0 0
................................................TTCGGGTCTACCCGGGGGCGCCA......................................................................................................... 23 3 20 0.15 3 1 2 0 0 0 0
.................................................................................................TAACAATACCGAAATTTCTTGGGTGACTG.................................................. 29 0 20 0.15 3 0 0 0 0 0 3
................................................TTCGGCTCCACCCGGGGGCGCCA......................................................................................................... 23 3 20 0.15 3 3 0 0 0 0 0
......................................................................................................................................................GGAAAGGTATTCCCACACATAGG... 23 0 20 0.15 3 0 0 0 3 0 0
.................................................TCGGGTCCACCCGGGAGCGCCA......................................................................................................... 22 3 20 0.15 3 0 3 0 0 0 0
..................................................CGGGCCCACCCGGGGGAGCCA......................................................................................................... 21 3 20 0.15 3 3 0 0 0 0 0
....................................................GGTCCACCCGGAGGCGACA......................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
..................................................CCGGACCACCCGGGGGAGCCA......................................................................................................... 21 3 7 0.14 1 0 1 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGAAATGTTT................ 21 3 8 0.13 1 0 1 0 0 0 0
....................................................GGTCCACCTGGAGGCGCCA......................................................................................................... 19 2 8 0.13 1 0 1 0 0 0 0
....................................................GGTGCACCCGGCGGCGCCA......................................................................................................... 19 2 8 0.13 1 0 1 0 0 0 0
..................................................CCGGACCACACGGGGGCGCCA......................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0
....................................................GGTCCCACCGGGGGCGCCA......................................................................................................... 19 2 9 0.11 1 1 0 0 0 0 0
....................................................GGTCCACCCGGGTGCGCCC......................................................................................................... 19 2 9 0.11 1 1 0 0 0 0 0
............................................................................................................................................AATACTGTGAGGGAAGATGT................ 20 3 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................TAATACTGACAGGAAAAGTA................. 20 3 9 0.11 1 0 1 0 0 0 0
..................................................CCGGTCCACCCGGGCACGCCA......................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0
.................................................TCGGGTCAACCCGGGGGCGCCA......................................................................................................... 22 3 20 0.10 2 2 0 0 0 0 0
.................................................TCGGGTCCACCCGGGTGCGCCA......................................................................................................... 22 3 20 0.10 2 2 0 0 0 0 0
................................................TTCGGGTCCACCCTGGGGCGCCA......................................................................................................... 23 3 20 0.10 2 2 0 0 0 0 0
TCACTGTCACTTTTTGCCTTCCACT....................................................................................................................................................... 25 0 20 0.10 2 0 0 0 2 0 0
.................................................TCGGGTCCACCCTGGGGCGCCA......................................................................................................... 22 3 20 0.10 2 2 0 0 0 0 0
....................................................GGTCCACCCGGGGGAGATA......................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0
..................................................CGGGTCCACCCGGGGGCGCC.......................................................................................................... 20 1 20 0.10 2 0 0 0 0 2 0
.....................................................GTGCACCCGGGGGCGCCA......................................................................................................... 18 1 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................TAATACTGCCAGGTAAGGT.................. 19 3 10 0.10 1 0 1 0 0 0 0
.................................................TCGGGTCCACCCGGGGTCGCCA......................................................................................................... 22 3 20 0.10 2 0 0 0 2 0 0
..................................................CGGGTCCACCCGGGTGCGCCA......................................................................................................... 21 2 20 0.10 2 2 0 0 0 0 0
..................................................CGGGTCCACCCGGGGGCGC........................................................................................................... 19 1 20 0.10 2 0 0 0 2 0 0
.................................................TCGGGTCCACCCGGGGGCTCCA......................................................................................................... 22 3 20 0.10 2 0 1 1 0 0 0
................................................TTCGGGTCCACCCGTGGGCGCCA......................................................................................................... 23 3 20 0.10 2 2 0 0 0 0 0
..................................................................................................AACAATACCGAAATTTCTTGGGT....................................................... 23 0 20 0.10 2 0 0 0 2 0 0
....................................................GGTCCCCCCGGGGGAGCGA......................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0
....................................................GGTCCACCCGCGGACGACA......................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0
..................................ATGGACGTTTCAATTGAAGG.......................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 1
...........................................................................................................................................TAATACTGTTTGGTAAGGT.................. 19 3 19 0.05 1 0 1 0 0 0 0
....................................................GGTCAACCCGGTGGCGCCT......................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0
.................................................................................................TAACAATAACGAAATTTCTTGGG........................................................ 23 1 20 0.05 1 0 0 0 1 0 0
..................................................CGGGTCCACCGGGGGGCGCCA......................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
..................................................CGGGTGCACCCGGGGGCGCCA......................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
................................................TGCGGGTCTACCCGGGGGCGCCA......................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
.................................................................................................TAACAATAACGAAATTTCTTGGGT....................................................... 24 1 20 0.05 1 0 0 0 1 0 0
..................................................CGGGTGCATCCGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCACCCGGGTGAGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.................................................TCGGGTCCACCCGGGGGGGCCA......................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCACCCGGGTGCGCC.......................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0
..................................................TCGGTCCACCCGGGGGCGCCG......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
.....................................................GTTCACCCGGGGGCGCCA......................................................................................................... 18 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................TAACAATACCGAAATTTCTTGGGTGACT................................................... 28 0 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................................................AAGGTATTCCCACACATAGGGG. 22 0 20 0.05 1 0 0 0 1 0 0
..................................................CGGGTCCATCCGGGGGCGCCA......................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
..................................................TCGATCCACCCGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.................................................TCGGGTCCACCCGGGGGCGCGA......................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTACACCCGGGGGCGACA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.................................................TCGGGTCCACTCGGGGGCGCCA......................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCACCCGGGGGCACCA......................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCACACGGGGGCGCAA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.................................................GCGGGGCCACCCGGGGGCGCCA......................................................................................................... 22 2 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTTCACCCGGGGGCGACA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGTT.................. 19 3 20 0.05 1 0 1 0 0 0 0
..................................................TCGGTCCACCCGGAGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.................................................ACGGGTCCACCCGGGCGCGCCA......................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
.................................................TCGGATCCACCCGGGGGCGCCA......................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
.......................................................................................................TACCGAAATTTCTTGGGTGACTG.................................................. 23 0 20 0.05 1 0 0 0 0 0 1
..................................................CGGGACCACCCCGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
....................................................GGTCATCCCGGGGACGCCA......................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
..................................................TCGGTCCACCCGGGGGCGCC.......................................................................................................... 20 2 20 0.05 1 0 0 0 1 0 0
.................................................TCGGGTCGACCCGGGGGCGCCA......................................................................................................... 22 3 20 0.05 1 0 0 0 1 0 0
..................................................CGGATCCACCCGGGGGAGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................AGGAAAGGTATTCCCACACATA..... 22 0 20 0.05 1 0 0 0 1 0 0
....................................................GGTCCACCCGGCGGCCCCC......................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGGTCCAGCCGGGGGCGCCA......................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
..................................................CGGGCCCACCCCGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
...............................................GTGCGGGTCAACCCGGGGGCGCCA......................................................................................................... 24 3 20 0.05 1 0 1 0 0 0 0
..........................................................................................TTCTAAATAACAATACCGAAATT............................................................... 23 0 20 0.05 1 0 0 0 1 0 0
..................................................CGGGTCCAGCGGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
.................................................TCGGGTCCACCCGGGGGCGCCATGTA..................................................................................................... 26 3 20 0.05 1 0 0 0 1 0 0
............TTTGCCTTCCACTTGAATT................................................................................................................................................. 19 0 20 0.05 1 0 0 0 1 0 0
................................................TTCGGGTACACCCGGGGGCGCCA......................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGGGCAACCCGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
....................................................GGTCCATCCGGCGGCCCCA......................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
..................TTCCACTTGAATTAATATGTACGTT..................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
..................................................TCGGTCCACCCAGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................TAATACTGTCAGGTAAGAT.................. 19 3 20 0.05 1 0 0 0 1 0 0
.................................................ACGGGTACACCCGGGGGCGCC.......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCACCCGGGGGTGCCA......................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
.................................................TCGGGTCCACCCGGGGGCGCC.......................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 1
..................................................CGGGTCCACCCGGGGGCGTCA......................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
................................................TGCGGGTACACCCGGGGGCGCCA......................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................TACCGAAATTTCTTGGGTGACTGCAA............................................... 26 0 20 0.05 1 0 0 0 1 0 0
.................................................TCGGGTCTACCCGGGGGCGCCA......................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTACACCCGGCGGCGCCA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCGTCCGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGGTCCACCCGGGCGCGCTA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
..................................................CGGGTCCACCCGTGTGCGCCA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0
.................................................TCGGGTCCACCCGTGGGCGCCA......................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
................................................TTCGGGTCCACCCGGGGTCGCCA......................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGGACCACCCGGGTGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGGTCCACCCGGGGGCGCGA......................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
.............................................................................................TAAATAACAATACCGAAATTTCTTGG......................................................... 26 0 20 0.05 1 0 0 0 1 0 0
.................................................TCGGGTCCACCCGGGGGTGCCA......................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0
.................................................ACGGGTCCACCCGGGGGCGCAA......................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGGTCCAAACGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0
..................................................CGGATCCAACCGGGGGCGCCA......................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AGTGACAGTGAAAAACGGAAGGTGAACTTAATTATACATGCAAATTTAACGTCCAGGTGGGCCCCCGCGGTACTTTAAAATCTTATCAAAAAGATTTATTGTTATGGCTTTAAAGAACCCACTGACGTTAAAAAATAAAATTATGACACTCCTTTCCATAAGGGTGTGTATCCCCC
*****************************************.......(((((((((...((((((((((((..((.....(((((((......))))))).....))..))....)))))))))).)))))))))...************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 V111
male body
...................................................................................................................................................ACTCCTTTCCATAAGGGTGTGTAT..... 24 0 20 0.10 2 0 2 0
.................GAAGGTTAACTTAATTATACATGCA...................................................................................................................................... 25 1 20 0.05 1 1 0 0
.................................................................................................................................................ACACTCCTTTCCATAAGGGTGTGTAT..... 26 0 20 0.05 1 1 0 0
.......................................................................................................................................................CTTTCCATAAGGGTGTGTATCCC.. 23 0 20 0.05 1 1 0 0
...................................................................................TATCAAAAAGATTTATTGTTATGG..................................................................... 24 0 20 0.05 1 1 0 0
.................................................................................................................................................AAACTCCTTTCCATATGGGTGTGT....... 24 2 20 0.05 1 1 0 0
......................................................................................................................................................CCTTTCCATAAGGGTGTGTAT..... 21 0 20 0.05 1 0 0 1
...................................................................................................TGTTATGGCTTTAAAGAACCCACTG.................................................... 25 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_10997:695-870 + dpe_33 TCACTGTCACTTT-------------TTGCCTTCCACTTGAATTAAT---ATGTACGTTTAAATTGCAGGTCCACCCGGGGGCGCCATGAAATTT---TAGAATAGTTTTTCT--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--GGTGACTGCAAT------TTTTTATTTTAATA--CT--GTG-AGGAAAGGT------ATTC-----CCACACATAGGGGG
dp5 Unknown_group_200:516-676 + TCACTGACACTTT-------------TTGCCTTCCACTTGAATTAAT---ATGTACGTTTAAATTGCAAGTCCACCCGGGGGCGCCATGAAATTT---TAGAATAGTTTTTCT--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--GGTGACTGCAAT------TTTGTATT-TAATA--C----GA--CGAAT---ACGTGC-GT------------------TC
droAna3 scaffold_12928:555148-555307 + TCACTGTCACTGTTT-------TTGGTTGCTTTTTAT-----TTAAT---AATTATAGTAA---ACCAAGTCCACCCGGGGGCGCCAAAATGTTTATTGAAATTAGTTTTCCT--------CA-----------CAC-TTTCGAAAA-AACTAAA--GGTGGCTGTTTA------CTATAATT-TTAAA--CGAC-GA--CGAAAAAT------AAT------------------TC
droBip1 scf7180000391433:1504-1655 + TCACTGTCACTTTG------------TTTTTTTTGTTT----A--TT---AAATATCTCGC---ACTAAGTCCACCCGGGGGCGCCAAAATGTTTAACGAGATTGTTTTATCTCACACTTTAAATA-------ACAA-AACAAAAA--------G--GGTGGCTGCTAA------TATTTAATAAAAAA--CT--GGG--CGAAA---A----------------------------
droKik1 scf7180000301852:10719-10853 + CCACTGTTACTTTTT-----AATTTGTTACCTTTTTTT----A--TAAAATT-ATT----------CAAGTCCACCCGGAAGCGCCATGGAATTT---CTAATTAGTTTATTA--------GAATC-------AAAA-AACCGATA---ACTT----GGTGGCAAGAAA------T--------------------------------------AATTTTTTA----------TATT
droFic1 scf7180000453322:8889-9052 + TCACTGTCACTATAAAAAAAAAATTGTTGGCTTTAATT----A--AT----T-AAT----------TTAGTCCACCCGGGGGCGCCATGAAAATT---TAGAAGAGTTTTTCT--------AAATATGTATAAATAA-TACCGAAAA--ACTTGG--GGTAGCTAATTA------ATTTATTT-TTG-GCGAACC-GAAACGAAAAAT---------------------------AT
droEle1 scf7180000490364:38182-38262 + TCACTGTCACTCAA------AACTTATTTCCTGTACTT----T---A---TTGTTC----------ACTGTCCACTCGGGGGCGCCATTAAAAAT---GAGAATATATTT-------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776778:2115-2269 + TCACTGTCACTAG-------------TTTCCAA----ATAAATTAAT---AACTTT----------AACGTCCACCCGGGGGCGCCATGAAAAAT---TAGA-GAGTT-TTCT--------AATTA-------TTAATTACCGAAAA-AACTT-GGCGGTGGCTAAAAT------TATTAA----TA-GCGA----GAAACGAAA---ACGA------------TAAGAAAAGGTGT
droBia1 scf7180000301478:1206-1320 + TCACTGTCACTTT-------------TTGCCTTCAATT----A--TT---AT-CAT----------ATAACCCACCCGGGAGCGCCATAAAAATG---TAGAATAATTTTTCT--------AAT------------A-TACCGAAAA--ACTT-T--GCTGGCTAGACA------TTTTTATT------------------------------------------------------
droTak1 scf7180000415375:2233-2360 + TCACTGTCACTTG-------------TTGCCTTTAATT----A--TTAATAG-TTT----------AAAGTCCACCCGGGGGCGCCATGAAAATT---TAGAATAGTTTTTCC--------AAATA-------AGAA-AACCGAAAAATACTT-T--GGTGGCGATAAA------CTTTAATT-TTA--------------------------------------------------
droYak3 v2_chrUn_6210:417-564 + TCACTGTCACTTTAA-------TTGAATGCCTTTTGTTTAAAA---T---AATTAT----------CTTGTCCACCCGGGGGCGCCATGAAGTTT---TTAATTAGTTTATT---------GAATA-------ATATTAACCGAA-----CTT-T--GGTGGTAAGAATAATACATTTTTATT---T--CGCAAC-GA--CGAGA---A----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TCACTGTCACTTT-------------TTGCCTTCCACTTGAATTAAT---ATGTACGTTTAAATTGCAGGTCCACCCGGGGGCGCCATGAAATTT---TAGAATAGTTTTTCT--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--GGTGACTGCAAT------TTTTTATTTTAATA--CT--GTG-AGGAAAGGT------ATTC-----CCACACATAGGGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................GGTCCACCCGGGGGCGCCA......................................................................................................................................................192284.505690750253116125
..................................................................CAGGTCCACCCGGGGGCGCCA......................................................................................................................................................2118.008000710
...................................................................AGGTCCACCCGGGGGCGCCA......................................................................................................................................................2013.003010101
....................................................................GGTCCACCCGGGGGCGCC.......................................................................................................................................................1822.004020020
....................................................................GGTCCACCCGGGGGCGCCAT.....................................................................................................................................................2011.001000100
....................................................................GGTCCACCCGGGGGCGCCG......................................................................................................................................................1931.003010110
....................................................................GGTCCACCCGGGGGCGCCC......................................................................................................................................................1980.635000410
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--GG..............................................................................23200.55110110000
.......................................................................................................................................................................................................AGGAAAGGT------ATTC-----CCACACATAGG...24200.408080000
..................................................................CAGGTCCACCCGGGGGCGCAC......................................................................................................................................................2130.331000100
....................................................................GGTCCACCCGGGGGCGTT.......................................................................................................................................................1860.332010010
....................................................................GGTCCACCCGGGGGCGCCAC.....................................................................................................................................................2030.331010000
................................................................................................................T--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--GG..............................................................................27200.255050000
....................................................................GGTCCACCCGGGGGCGCGG......................................................................................................................................................1940.251000100
....................................................................GGTCCACCCGGGGGCGCCT......................................................................................................................................................1940.251000010
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--GGT.............................................................................24200.255050000
....................................................................GGTCCACCCGGGGGCGCTT......................................................................................................................................................1960.171010000
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--GGTGACTG........................................................................29200.153300000
........................................................................................................................................................................................................GGAAAGGT------ATTC-----CCACACATAGG...23200.153030000
TCACTGTCACTTT-------------TTGCCTTCCACT.......................................................................................................................................................................................................25200.102020000
.............................................................................................................................A-------ACAA-TACCGAAAT-TTCTT-G--GGT.............................................................................23200.102020000
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--GGTGACT.........................................................................28200.051010000
...........................................................................................................................................................................................................AAGGT------ATTC-----CCACACATAGGGG.22200.051010000
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTG........................................................................23200.051100000
.......................................................................................................................................................................................................AGGAAAGGT------ATTC-----CCACACATA.....22200.051010000
.............................................................................................................TTCT--------AAATA-------ACAA-TACCGAAAT-T........................................................................................23200.051010000
............T-------------TTGCCTTCCACTTGAATT.................................................................................................................................................................................................19200.051010000
...............................TTCCACTTGAATTAAT---ATGTACGTT..................................................................................................................................................................................25200.051000001
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTGCAA.....................................................................26200.051010000
................................................................................................................T--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--G...............................................................................26200.051010000
dp5
TCACTGACACTTT-------------TTGCCTTCCACTTGAATTAAT---ATGTACGTTTAAATTGCAAGTCCACCCGGGGGCGCCATGAAATTT---TAGAATAGTTTTTCT--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--GGTGACTGCAAT------TTTGTATT-TAATA--C----GA--CGAAT---ACGTGC-GT------------------TCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................AGTCCACCCGGGGGCGCCA......................................................................................................................................................192053.8510770541620032478000
.....................................................................GTCCACCCGGGGGCGCCA......................................................................................................................................................182041.7083415791141329197000
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTGC.......................................................................2456.003002810000100
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTGCAA.....................................................................2654.602301901000030
...........................................TAAT---ATGTACGTTTAAATTGCAAG.......................................................................................................................................................................2453.40170100001870
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTG........................................................................2352.801431000000010
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTGCA......................................................................2552.201101000000100
.............................................AT---ATGTACGTTTAAATTGCAAGTCCA...................................................................................................................................................................2651.2060200000040
...........................................TAAT---ATGTACGTTTAAATTGCAAGT......................................................................................................................................................................2551.0050000000050
....................................................................AGTCCACCCGGGGGCGCCT......................................................................................................................................................19201.002001800002000
..................................................................CAAGTCCACCCGGGGGCGCCA......................................................................................................................................................21130.85110201026000
......................................................................TCCACCCGGGGGCGCCA......................................................................................................................................................17200.75150000000267
....................................................GTACGTTTAAATTGCAAGTCCACCCGGG.............................................................................................................................................................2850.6030300000000
....................................................GTACGTTTAAATTGCAAGTCCACCCGG..............................................................................................................................................................2750.6030300000000
.............................................AT---ATGTACGTTTAAATTGCAAGTCCAC..................................................................................................................................................................2750.6030100001010
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--GG..............................................................................2350.6030200000010
.............................................AT---ATGTACGTTTAAATTGCAAGTCCACC.................................................................................................................................................................2850.6030200000010
.....................................................TACGTTTAAATTGCAAGTCCACC.................................................................................................................................................................2370.5740400000000
.....................................................TACGTTTAAATTGCAAGTCCACCC................................................................................................................................................................2470.5740310000000
..............................................................................................................................................................GTGACTGCAAT------TTTGTATT-TAATA--C----GA--C....................................2820.5010000000010
......................................................................TCCACCCGGGGGCGCCAT.....................................................................................................................................................18200.50100900010000
.....................................................................................................................................................TCTT-G--GGTGACTGCAAT------TTTGTA........................................................2320.5010100000000
.....................................................................GTCCACCCGGGGGCGCCT......................................................................................................................................................18200.4590900000000
......................................................................TCCACCCGGGGGCGCCATTT...................................................................................................................................................20200.4590900000000
.....................................................TACGTTTAAATTGCAAGTCCACCCG...............................................................................................................................................................2570.4330300000000
....................................................GTACGTTTAAATTGCAAGTCCACCCG...............................................................................................................................................................2650.4020200000000
.....................................................................GTCCACCCGGGGGCGCCG......................................................................................................................................................18200.4080800000000
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--G...............................................................................2250.4020200000000
....................................................GTACGTTTAAATTGCAAGTCCACC.................................................................................................................................................................2450.4020200000000
.............................................AT---ATGTACGTTTAAATTGCAAG.......................................................................................................................................................................2250.4020000000020
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACT.........................................................................2250.4020200000000
....................................................................AGTCCACCCGGGGGCGCC.......................................................................................................................................................18200.4080001007000
........................................................................................................................................A-TACCGAAAT-TTCTT-G--GGTGACTGCAA.....................................................................2750.4020000000020
...........................................................TAAATTGCAAGTCCACCCGGGGG...........................................................................................................................................................2380.3830300000000
......................................................................TCCACCCGGGGGCGCCATT....................................................................................................................................................19200.3570000061000
......................................TGAATTAAT---ATGTACGTTTAAATTG...........................................................................................................................................................................25100.3030100000020
.......................................................................................TGAAATTT---TAGAATAGTTTTTCT--------AAA.................................................................................................................26200.3060600000000
.....................................................TACGTTTAAATTGCAAGTCCACCCA...............................................................................................................................................................2570.2920200000000
...................................................................AAGTCCACCCGGGGGCGCCA......................................................................................................................................................20140.2940100102000
.....................................................................GTCCACCCGGGGGCGCCATT....................................................................................................................................................20200.2550500000000
................................................................TGCAAGTCCACCCGGGGGCGCCA......................................................................................................................................................23130.2330300000000
.......................................................................CCACCCGGGGGCGCCA......................................................................................................................................................16200.2040000000040
..................................................ATGTACGTTTAAATTGCAAGT......................................................................................................................................................................2150.2010100000000
............................................................................................................................TA-------ACAA-TACCGAAAT-TTCTT-G--GGT.............................................................................2450.2010100000000
...........................................TAAT---ATGTACGTTTAAATTGCAAGTC.....................................................................................................................................................................2650.2010000000010
............................................AAT---ATGTACGTTTAAATTGCAAG.......................................................................................................................................................................2350.2010100000000
......................................................................................................................................CAA-TACCGAAAT-TTCTT-G--G...............................................................................1950.2010000000010
...........................................TAAT---ATGTACGTTTAAATTGCAAGTCC....................................................................................................................................................................2750.2010100000000
...........................................................................................................................................ACCGAAAT-TTCTT-G--GGTGACTGC.......................................................................2350.2010100000000
...........................................................................................................................................ACCGAAAT-TTCTT-G--GGTGACTGCAA.....................................................................2550.2010100000000
...........................................TAAT---ATGTACGTTTAAATTGCAAGA......................................................................................................................................................................2550.2010000000010
....................................................GTACGTTTAAATTGCAAGTCCACCC................................................................................................................................................................2550.2010100000000
..........................................................................................................................................TACCGAAAT-TTCTT-G--GGTGACTGCAAT------..............................................................2750.2010100000000
......................................................................................................................................CAA-TACCGAAAT-TTCTT-G--GGTGACTG........................................................................2650.2010100000000
..................................................ATGTACGTTTAAATTGCAAGTCCACCC................................................................................................................................................................2750.2010100000000
................................................................................................................T--------AAATA-------ACAA-TACCGAAAT-TTCTT-G--GG..............................................................................2750.2010010000000
...............................................................TTGCAAGTCCACCCGGGGGC..........................................................................................................................................................20130.1520100100000
................................................................TGCAAGTCCACCCGGGGGCGCCATGAA..................................................................................................................................................27130.1520200000000
...............................................................TTGCAAGTCCACCCGGGGG...........................................................................................................................................................19130.1520200000000
....................................................................AGTCCACCCGGGGGCGCCAT.....................................................................................................................................................20200.1530200001000
........................................................................CACCCGGGGGCGCCA......................................................................................................................................................15200.1530000000021
.....................................................TACGTTTAAATTGCAAGTC.....................................................................................................................................................................1970.1410100000000
.....................................................TACGTTTAAATTGCAAGTCCACA.................................................................................................................................................................2370.1410100000000
.....................................................TACGTTTAAATTGCAAGTCCAC..................................................................................................................................................................2270.1410000000010
.....................................................TACGTTTAAATTGCAAGTCCA...................................................................................................................................................................2170.1410100000000
.....................................................TACGTTTAAATTGCAAGTCCACCCGG..............................................................................................................................................................2670.1410000000100
.....................................................TACGTTTAAATTGCAAGTCCACCCGGG.............................................................................................................................................................2770.1410100000000
...........................................................TAAATTGCAAGTCCACCCGGGGGCGCCT......................................................................................................................................................2880.1310100000000
...........................................................TAAATTGCAAGTCCACCCGGGGGCGCC.......................................................................................................................................................2780.1310100000000
...........................................................TAAATTGCAAGTCCACCCGGGGGCGCCA......................................................................................................................................................2880.1310000000010
..................................................................................CGCCATGAAATTT---TAGAATAGTTTT...............................................................................................................................25170.1220101000000
................................TCCACTTGAATTAAT---ATGTAC.....................................................................................................................................................................................2190.1110001000000
........................................................GTTTAAATTGCAAGTCCA...................................................................................................................................................................1890.1110100000000
.........................................................TTTAAATTGCAAGTCCACCCG...............................................................................................................................................................2190.1110100000000
......................................................................TCCACCCGGGGGCGCCATTTT..................................................................................................................................................21200.1020100001000
......................................................................TCCACCCGGGGGCGCCATA....................................................................................................................................................19200.1020000020000
.......................................................................................TGAAATTT---TAGAATAGTTTTTCT--------A...................................................................................................................24200.1020000000200
.............................................AT---ATGTACGTTTAAATTGC..........................................................................................................................................................................19110.0910100000000
................................................................TGCAAGTCCACCCGGGGGC..........................................................................................................................................................19130.0810100000000
................................................................TGCAAGTCCACCCGGGGGT..........................................................................................................................................................19130.0810100000000
..................................................................CAAGTCCACCCGGGGGCGCCATGAAA.................................................................................................................................................26130.0810100000000
................................................................TGCAAGTCCACCCGGGGGCGC........................................................................................................................................................21130.0810100000000
................................................................TGCAAGTCCACCCGGGGG...........................................................................................................................................................18130.0810100000000
.................................................................GCAAGTCCACCCGGGGGCGCCA......................................................................................................................................................22130.0810100000000
................................................................TGCAAGTCCACCCGGGGGCGCCATG....................................................................................................................................................25130.0810100000000
.................................................................GCAAGTCCACCCGGGGGCGCCATGAAA.................................................................................................................................................27130.0810100000000
..................................................................CAAGTCCACCCGGGGGCGCC.......................................................................................................................................................20130.0810100000000
................................................................TGCAAGTCCACCCGGGGGCGCCATGA...................................................................................................................................................26130.0810100000000
................................................................TGCAAGTCCACCCGGGGGCGCC.......................................................................................................................................................22130.0810100000000
...............................................................TTGCAAGTCCACCCGGGG............................................................................................................................................................18140.0710100000000
...............................................................TTGCAAGTCCACCCGGGGT...........................................................................................................................................................19140.0710100000000
.............................................................................GGGGGCGCCATGAAATTT---TAGAATAGT..................................................................................................................................27150.0710000000010
................................................................................GGCGCCATGAAATTT---TAGAATAGTT.................................................................................................................................25170.0610100000000
.....................................................................GTCCACCCGGGGGCGCCATGAAATTT---...........................................................................................................................................26180.0610100000000
......................................................................................................................................................CTT-G--GGTGACTGCAAT------TTTGTA........................................................22180.0610100000000
.........................................................................ACCCGGGGGCGCCATGAAATTT---...........................................................................................................................................22180.0610100000000
......................................................................TCCACCCGGGGGCGCCAG.....................................................................................................................................................18200.0510100000000
......................................................................TCCACCCGGGGGCGCCAC.....................................................................................................................................................18200.0510100000000
......................................................................TCCACCCGGGGGCGCCACC....................................................................................................................................................19200.0510000001000
......................................................................TCCACCCGGGGGCGCCATTTC..................................................................................................................................................21200.0510001000000
....................................................................AGTCCACCCGGGGGCGCCG......................................................................................................................................................19200.0510000001000
.......................................................................................TGAAATTT---TAGAATAGTTTTTCC--------C...................................................................................................................24200.0510000000010
.......................................................................................TGAAATTT---TAGAATAGTTTTTCT--------....................................................................................................................23200.0510100000000
......................................................................TCCACCCGGGGGCGCCATAT...................................................................................................................................................20200.0510000001000
.....................................................................GTCCACCCGGGGGCGCCATA....................................................................................................................................................20200.0510000010000
droAna3
TCACTGTCACTGTTT-------TTGGTTGCTTTTTAT-----TTAAT---AATTATAGTAA---ACCAAGTCCACCCGGGGGCGCCAAAATGTTTATTGAAATTAGTTTTCCT--------CA-----------CAC-TTTCGAAAA-AACTAAA--GGTGGCTGTTTA------CTATAATT-TTAAA--CGAC-GA--CGAAAAAT------AAT------------------TCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................AGTCCACCCGGGGGCGCCA......................................................................................................................................................192013.752751410101330
..............................................T---AATTATAGTAA---ACCAAGTCCACCCGGG.............................................................................................................................................................2811.001100000
..................................................................CAAGTCCACCCGGGGGCGCCA......................................................................................................................................................21200.5010030043
.....................................................TATAGTAA---ACCAAGTCCACCCGGGGGC..........................................................................................................................................................27180.448251000
.....................................................TATAGTAA---ACCAAGTCCACCCGGGG............................................................................................................................................................25200.357340000
.....................................................................GTCCACCCGGGGGCGCCA......................................................................................................................................................18200.357000700
.....................................................TATAGTAA---ACCAAGTCCACCCGGGGG...........................................................................................................................................................26190.326240000
......................................................................................................................................CAC-TTTCGAAAA-AACTAAA--GGTGGCTG........................................................................27200.255500000
......................................................ATAGTAA---ACCAAGTCCACCCGGGGGC..........................................................................................................................................................26190.214310000
......................................................................................................................................CAC-TTTCGAAAA-AACTAAA--GGTGGCT.........................................................................26200.204040000
.......................................................................................................................................AC-TTTCGAAAA-AACTAAA--GGTGGCTG........................................................................26200.204400000
.......................................................................................................................................................TAAA--GGTGGCTGTTTA------CTATAATT-.....................................................24200.204310000
.................................................................CCAAGTCCACCCGGGGGCGCCAAAA...................................................................................................................................................25130.152200000
.....................................................TATAGTAA---ACCAAGTCCACCCGGG.............................................................................................................................................................24200.153030000
.......................................................TAGTAA---ACCAAGTCCACCCGGGGG...........................................................................................................................................................24200.153120000
.......................................................TAGTAA---ACCAAGTCCACCCGGGGGCGC........................................................................................................................................................27160.132020000
..........................................................TAA---ACCAAGTCCACCCGGGGGCGC........................................................................................................................................................24180.112020000
.......................................................TAGTAA---ACCAAGTCCACCCGGGGGC..........................................................................................................................................................25190.112110000
.......................................................TAGTAA---ACCAAGTCCACCCGGGG............................................................................................................................................................23200.102101000
.................................................................CCAAGTCCACCCGGGGGCGCCAAA....................................................................................................................................................24130.081010000
.......................................................................................................................................................TAAA--GGTGGCTGTTTA------CTATAATT-TTA..................................................27140.071100000
...........................................................AA---ACCAAGTCCACCCGGGGGCGCC.......................................................................................................................................................24170.061010000
.....................................................TATAGTAA---ACCAAGTCCACCCGGGGGCG.........................................................................................................................................................28180.061100000
....................................................TTATAGTAA---ACCAAGTCCACCCGGGGGC..........................................................................................................................................................28180.061010000
.......................................................TAGTAA---ACCAAGTCCACCCGGGGGCG.........................................................................................................................................................26180.061100000
.......................................................TAGTAA---ACCAAGTCCACCCGGG.............................................................................................................................................................22200.051100000
........................................................................................................................................C-TTTCGAAAA-AACTAAA--GGTGGCTGT.......................................................................26200.051100000
......................................................................TCCACCCGGGGGCGCCAAAATGTTTA.............................................................................................................................................26200.051100000
......................................................ATAGTAA---ACCAAGTCCACCCGGGGG...........................................................................................................................................................25200.051010000
..................................................................CAAGTCCACCCGGGGGCGCCAA.....................................................................................................................................................22200.051100000
..................................................AATTATAGTAA---ACCAAGTCCACC.................................................................................................................................................................23200.051010000
................................................................................................................T--------CA-----------CAC-TTTCGAAAA-AACTAAA--GGT.............................................................................25200.051010000
...................................................................AAGTCCACCCGGGGGCGCCA......................................................................................................................................................20200.051000010
..................................................AATTATAGTAA---ACCAAGTCCACCCG...............................................................................................................................................................25200.051100000
......................................................................................................................................CAC-TTTCGAAAA-AACTAAA--GGTGGC..........................................................................25200.051100000
....................................................................AGTCCACCCGGGGGCGCC.......................................................................................................................................................18200.051000100
......................................................................................................................................CAC-TTTCGAAAA-AACTAAA--GGTGGCC.........................................................................26200.051010000
.............................................................................................................................................CGAAAA-AACTAAA--GGTGGCTGTTTA------CA............................................................27200.051100000
..........................................................TAA---ACCAAGTCCACCCGGGG............................................................................................................................................................20200.051100000
......................................................................................................................................................CTAAA--GGTGGCTGTTTA------CT............................................................19200.051010000
..............................................................................................................CCT--------CA-----------CAC-TTTCGAAAA-AACTAAA--GGT.............................................................................27200.051010000
.......................................................TAGTAA---ACCAAGTCCACCCGG..............................................................................................................................................................21200.051100000
...........................................................................................................................................TTCGAAAA-AACTAAA--GGTGGCTG........................................................................23200.051100000
.................................................................................................................................................AA-AACTAAA--GGTGGCTGTTTA------CTAT..........................................................25200.051100000
droBip1
TCACTGTCACTTTG------------TTTTTTTTGTTT----A--TT---AAATATCTCGC---ACTAAGTCCACCCGGGGGCGCCAAAATGTTTAACGAGATTGTTTTATCTCACACTTTAAATA-------ACAA-AACAAAAA--------G--GGTGGCTGCTAA------TATTTAATAAAAAA--CT--GGG--CGAAA---A----------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCACTGTTACTTTTT-----AATTTGTTACCTTTTTTT----A--TAAAATT-ATT----------CAAGTCCACCCGGAAGCGCCATGGAATTT---CTAATTAGTTTATTA--------GAATC-------AAAA-AACCGATA---ACTT----GGTGGCAAGAAA------T--------------------------------------AATTTTTTA----------TATTSizeHit CountTotal NormTotal
No Reads
droFic1
TCACTGTCACTATAAAAAAAAAATTGTTGGCTTTAATT----A--AT----T-AAT----------TTAGTCCACCCGGGGGCGCCATGAAAATT---TAGAAGAGTTTTTCT--------AAATATGTATAAATAA-TACCGAAAA--ACTTGG--GGTAGCTAATTA------ATTTATTT-TTG-GCGAACC-GAAACGAAAAAT---------------------------ATSizeHit CountTotal NormTotal
No Reads
droEle1
TCACTGTCACTCAA------AACTTATTTCCTGTACTT----T---A---TTGTTC----------ACTGTCCACTCGGGGGCGCCATTAAAAAT---GAGAATATATTT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCACTGTCACTAG-------------TTTCCAA----ATAAATTAAT---AACTTT----------AACGTCCACCCGGGGGCGCCATGAAAAAT---TAGA-GAGTT-TTCT--------AATTA-------TTAATTACCGAAAA-AACTT-GGCGGTGGCTAAAAT------TATTAA----TA-GCGA----GAAACGAAA---ACGA------------TAAGAAAAGGTGTSizeHit CountTotal NormTotal
No Reads
droBia1
TCACTGTCACTTT-------------TTGCCTTCAATT----A--TT---AT-CAT----------ATAACCCACCCGGGAGCGCCATAAAAATG---TAGAATAATTTTTCT--------AAT------------A-TACCGAAAA--ACTT-T--GCTGGCTAGACA------TTTTTATT------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCACTGTCACTTG-------------TTGCCTTTAATT----A--TTAATAG-TTT----------AAAGTCCACCCGGGGGCGCCATGAAAATT---TAGAATAGTTTTTCC--------AAATA-------AGAA-AACCGAAAAATACTT-T--GGTGGCGATAAA------CTTTAATT-TTA--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
TCACTGTCACTTTAA-------TTGAATGCCTTTTGTTTAAAA---T---AATTAT----------CTTGTCCACCCGGGGGCGCCATGAAGTTT---TTAATTAGTTTATT---------GAATA-------ATATTAACCGAA-----CTT-T--GGTGGTAAGAATAATACATTTTTATT---T--CGCAAC-GA--CGAGA---A----------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................GTCCACCCGGGGGCGCCA......................................................................................................................................................18206.2012400004153000030
.......................................................................CCACCCGGGGGCGCCA......................................................................................................................................................16201.90380000016000022
......................................................................TCCACCCGGGGGCGCCA......................................................................................................................................................17201.6533000000000033
....................................................................TGTCCACCCGGGGGCGCCA......................................................................................................................................................19201.35271011114000000
.....................................................TAT----------CTTGTCCACCCGGGGGCGCCATG....................................................................................................................................................26160.631007120000000
..................................................................CTTGTCCACCCGGGGGCGCCA......................................................................................................................................................21200.40800800000000
.....................................................................GTCCACCCGGGGGCGCCC......................................................................................................................................................18200.35700000000007
.....................................................TAT----------CTTGTCCACCCGGGGGCGCCA......................................................................................................................................................24170.18302000010000
.....................................................................GTCCACCCGGGGGCGCCG......................................................................................................................................................18200.15300000300000
....................................................TTAT----------CTTGTCCACCCGGGGGCGCCA......................................................................................................................................................25170.12200200000000
....................................................TTAT----------CTTGTCCACCCGGGGGCGCC.......................................................................................................................................................24180.11201100000000
....................................................TTAT----------CTTGTCCACCCGGGGGCGC........................................................................................................................................................23190.11201100000000
....................................................................TGTCCACCCGGGGGCGCCATGAAGTT...............................................................................................................................................26200.10200110000000
.......................................................T----------CTTGTCCACCCGGGGGCGCCATG....................................................................................................................................................24200.10200020000000
.......................................................T----------CTTGTCCACCCGGGGGCGCCA......................................................................................................................................................22200.10200000020000
.....................................................................GTCCACCCGGGGGCGCCAT.....................................................................................................................................................19200.10202000000000
.....................................................TAT----------CTTGTCCACCCGGGGGCGCCAT.....................................................................................................................................................25170.06101000000000
.....................................................TAT----------CTTGTCCACCCGGGGGCGCC.......................................................................................................................................................23180.06100100000000
....................................................................TGTCCACCCGGGGGCGCCATGAAGTTT---TA.........................................................................................................................................29180.06100100000000
......................................................................TCCACCCGGGGGCGCCATGAAGTTT---T..........................................................................................................................................26190.05101000000000
......................................................................TCCACCCGGGGGCGCCATGAAGTTT---TT.........................................................................................................................................27190.05100100000000
.....................................................TAT----------CTTGTCCACCCGGGGGCGC........................................................................................................................................................22190.05100100000000
..................................................................CTTGTCCACCCGGGGGCGCCATGAAGC................................................................................................................................................27200.05100100000000
..................................................................CTTGTCCACCCGGGGGCGCCATGA...................................................................................................................................................24200.05101000000000
..................................................................CTTGTCCACCCGGGGGCGCC.......................................................................................................................................................20200.05100100000000
......................................................................TCCACCCGGGGGCGCCG......................................................................................................................................................17200.05100000100000
....................................................................TGTCCACCCGGGGGCGCCATGAAGT................................................................................................................................................25200.05101000000000
.....................................................TAT----------CTTGTCCACCCGGGGGCG.........................................................................................................................................................21200.05101000000000
....................................................................TGTCCACCCGGGGGCGCCC......................................................................................................................................................19200.05100001000000
..................................................................CTTGTCCACCCGGGGGCGC........................................................................................................................................................19200.05101000000000
.......................................................T----------CTTGTCCACCCGGGGGCGCCATGAA..................................................................................................................................................26200.05101000000000

Generated: 05/17/2015 at 07:59 PM