ID:

dpe_320

 Coordinate:

scaffold_592:852-929 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.5 -28.8 -28.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Nobel_I-intLTRPao-
Nobel_LTRLTRPao-
mature
  1. scaffold_841:6233-6252 +
  2. scaffold_155:98817-98836 +
  3. scaffold_164:43925-43944 +
  4. scaffold_158:1486-1505 +
  5. scaffold_71:58245-58264 +
  6. scaffold_71:74043-74062 +
  7. scaffold_373:32887-32906 +
  8. scaffold_72:39896-39915 +
  9. scaffold_79:14378-14397 +
  10. scaffold_84:201209-201228 +
  11. scaffold_91:216486-216505 +
  12. scaffold_711:5121-5140 +
  13. scaffold_95:19332-19351 +
  14. scaffold_97:1899-1918 +
  15. scaffold_104:80303-80322 +
  16. dpe_320  scaffold_592:852-871 +
  17. scaffold_2562:1421-1440 +
  18. scaffold_2460:1094-1113 +
  19. scaffold_8256:1220-1239 +
  20. scaffold_6542:735-754 +
  21. scaffold_774:3815-3834 +
  22. scaffold_928:1024-1043 +
  23. scaffold_2666:1660-1679 +
  24. scaffold_2687:2777-2796 +
  25. scaffold_2508:1226-1245 +
star
  1. scaffold_774:3861-3883 +
  2. scaffold_841:6279-6301 +
  3. scaffold_928:1070-1092 +
  4. scaffold_57:114402-114424 -
  5. scaffold_57:120868-120890 -
  6. scaffold_711:5167-5189 +
  7. scaffold_95:13223-13245 +
  8. scaffold_95:19378-19400 +
  9. scaffold_98:135427-135449 -
  10. dpe_320  scaffold_592:898-920 +
  11. scaffold_3182:1054-1076 +
  12. scaffold_3797:235-257 -
  13. scaffold_1443:4175-4197 -
  14. scaffold_1443:4329-4351 +
  15. scaffold_6321:1371-1393 +
  16. scaffold_8630:648-670 +
  17. scaffold_6579:1103-1125 -
  18. scaffold_8832:793-815 -
  19. scaffold_7045:996-1018 -
  20. scaffold_9395:803-825 -

Sense Strand Reads

ACTGTCACTTTTTGCCTTTCCATTTGAATTAATATATACGTTTAAATTGCGAGTCCACCCGGGGGCGCCATTAAATTTTAGAATAGTTTTTCTAAATAACAATACCGAAAGTTCTTGGGTGACTGCAATTTTTTATTTAATACGACGAAAGAAAAGGGGTGCGTGCGTTCGATTTCAG
***********************************........(((((((.((((.((((((((((..........(((((((......)))))))..............)))))))))))))))))))))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total V050
head
 V111
male body		 V057
head
 M042
female body
 V042
embryo
 M021
embryo
................................................TCGGGTCCACCCGGGGGCGCCA............................................................................................................ 22 2 20 121.05 2421 2384 0 0 0 0 37
.................................................CGGGTCCACCCGGGGGCGCCA............................................................................................................ 21 1 20 115.75 2315 1923 63 329 0 0 0
.................................................CGAGTCCACCCGGGGGCGCCA............................................................................................................ 21 0 20 110.50 2210 959 744 0 507 0 0
..................................................GAGTCCACCCGGGGGCGCCA............................................................................................................ 20 0 20 91.25 1825 634 1009 0 161 21 0
.....................................................TCCACCCGGGGGCGCCATT.......................................................................................................... 19 0 1 23.00 23 6 0 13 4 0 0
................................................TCGTGTCCACCCGGGGGCGCCA............................................................................................................ 22 2 20 12.55 251 0 176 0 0 51 24
.................................................CGTGTCCACCCGGGGGCGCCA............................................................................................................ 21 1 20 8.45 169 0 0 161 0 8 0
.....................................................TCCACCCGGGGGCGCCATTT......................................................................................................... 20 1 1 6.00 6 0 3 2 1 0 0
...............................................TTCGTGTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 4.80 96 0 96 0 0 0 0
....................................................GTCCACCCGGGGGCGCCATT.......................................................................................................... 20 0 1 4.00 4 0 1 3 0 0 0
.....................................................TCCACCCGGGGGCGCCTTT.......................................................................................................... 19 1 4 3.00 12 2 3 5 2 0 0
...............................................TTCGAGTCCACCCGGGGGCGCCA............................................................................................................ 23 1 20 2.35 47 0 0 0 35 12 0
................................................TCGAGTCCTCCCGGGGGCGCCA............................................................................................................ 22 2 20 1.45 29 0 0 0 29 0 0
.................................................CGAGTCCAGCCGGGGGCGCCA............................................................................................................ 21 1 20 1.35 27 0 0 0 27 0 0
..................................................GCGTCCACCCGGGGGCGCCA............................................................................................................ 20 1 20 1.30 26 11 7 1 7 0 0
...............................................TTCGGGTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 1.25 25 0 0 0 20 5 0
.....................................................TCCACCCGGGGGCGCCATTTT........................................................................................................ 21 2 1 1.00 1 0 0 1 0 0 0
...................................................AGTCCACCCGGGGGCGCCATTT......................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.....................................................TCCACCCGGGGGCGCCATTG......................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.....................................................TCCACCCCGGGGCGCCATT.......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..TGTCACTTGTTGCCTTTCCATTTG........................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0
......................................................CCACCCGGGGGCGCCATT.......................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
.....................................................TCCACCCGGGGGCGCCATTA......................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
................................................TCGAGTCCACCCGGGGGCGCCA............................................................................................................ 22 1 20 0.95 19 0 0 0 0 0 19
.........................................................................................................................................TAATACGACGAAAGAAAAGGG.................... 21 0 20 0.90 18 0 18 0 0 0 0
.................................................CGAGTCCACCCGGGGGCGCC............................................................................................................. 20 0 20 0.85 17 5 0 0 9 3 0
................................................TCGTGTCCACCCGAGGGCGCCA............................................................................................................ 22 3 20 0.80 16 16 0 0 0 0 0
.................................................CGGGTCCAGCCGGGGGCGCCA............................................................................................................ 21 2 20 0.80 16 0 0 1 15 0 0
.................................................CGGGTCCACCCGAGGGCGCCA............................................................................................................ 21 2 20 0.70 14 14 0 0 0 0 0
................................................TCGAGTCCACCCGAGGGCGCCA............................................................................................................ 22 2 20 0.65 13 8 0 5 0 0 0
.................................................CGGGTACACCCGGGGGCGCCA............................................................................................................ 21 2 20 0.60 12 11 0 1 0 0 0
.................................................CGGGTCCAACCGGGGGCGCCA............................................................................................................ 21 2 20 0.60 12 4 0 1 7 0 0
................................................................................................TAACAATACCGAAAGTTCTTGGG........................................................... 23 0 20 0.55 11 0 0 0 11 0 0
..................................................GAGTCCACCCGGGGGCGCC............................................................................................................. 19 0 20 0.55 11 0 0 6 5 0 0
................................................TCGAGTCCACCCGGGGGCGCC............................................................................................................. 21 1 20 0.55 11 0 4 7 0 0 0
................................................TCGTGTCCACCCGGGGCCGCCA............................................................................................................ 22 3 20 0.50 10 9 0 1 0 0 0
.................................................CGGGTCCACCCGGGCGCGCCA............................................................................................................ 21 2 20 0.50 10 10 0 0 0 0 0
.................................................CGAGTCCACCCGGAGGCGCCA............................................................................................................ 21 1 20 0.45 9 8 0 1 0 0 0
.................................................CGAGTCCACCCGGCGGCGCCA............................................................................................................ 21 1 20 0.45 9 0 1 8 0 0 0
.................................................CGGGTCCACCCGGAGGCGCCA............................................................................................................ 21 2 20 0.45 9 9 0 0 0 0 0
...................................................GGTCCACCCGGGGGCGCCTTT.......................................................................................................... 21 2 5 0.40 2 0 2 0 0 0 0
.................................................CGAGTCCACCCGGGGGCGACA............................................................................................................ 21 1 20 0.40 8 2 2 4 0 0 0
................................................TCGAGTCCACCCGGGGGCACCA............................................................................................................ 22 2 20 0.40 8 0 3 4 1 0 0
................................................GCGTGTCCACCCGGGGGCGCCA............................................................................................................ 22 1 20 0.40 8 0 0 0 8 0 0
.........................................................................................................................................TAATACGACGAAAGAAAAGGGGT.................. 23 0 20 0.40 8 0 8 0 0 0 0
.................................................CGTGTCCACCCGGGGGCGCC............................................................................................................. 20 1 20 0.40 8 0 0 0 7 1 0
................................................ACGAGTCCACCCGGGGGCGCCA............................................................................................................ 22 1 20 0.40 8 0 2 4 2 0 0
..................................................GAGGCCACCCGGGGGCGCCA............................................................................................................ 20 1 20 0.40 8 0 1 7 0 0 0
................................................TCGAGTCCACCCGGGGCCGCCA............................................................................................................ 22 2 20 0.35 7 0 2 5 0 0 0
.................................................AGAGTCCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.35 7 7 0 0 0 0 0
.................................................CGAGTCCATCCGGGGGCGCCA............................................................................................................ 21 1 20 0.35 7 1 0 0 6 0 0
.........................................................................................................................................TAATACGACGAAAGAAAAGGGG................... 22 0 20 0.35 7 0 7 0 0 0 0
.................................................CGTGTCCACCCGGGGCCGCCA............................................................................................................ 21 2 20 0.35 7 6 0 1 0 0 0
...............................................TTCGGATCCACCCGGGGGCGCCA............................................................................................................ 23 3 20 0.35 7 7 0 0 0 0 0
.................................................CGAGTCCACCCGGGGGAGCCA............................................................................................................ 21 1 20 0.35 7 4 0 3 0 0 0
....................................................GTCCGCCCGGGGGCGACATT.......................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0
.....................................................TCCACCCGGGGCCGCCATT.......................................................................................................... 19 1 3 0.33 1 0 0 1 0 0 0
.................................................CGAGTACACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.30 6 5 0 1 0 0 0
.................................................CGTGTCCACCCGGAGGCGCCA............................................................................................................ 21 2 20 0.30 6 5 0 1 0 0 0
.................................................CGTGTCCACCCGGGGGCGACA............................................................................................................ 21 2 20 0.30 6 6 0 0 0 0 0
...............................................CTCGAGTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.30 6 0 0 0 6 0 0
..................................................GAGTCCACCCGGGCGCGCCA............................................................................................................ 20 1 20 0.30 6 2 2 2 0 0 0
................................................ACGTGTCCACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.30 6 0 0 0 6 0 0
..................................................GAGTCCACACGGGGGCGCCA............................................................................................................ 20 1 20 0.30 6 0 0 0 6 0 0
.................................................CGTGTCCACCCGGGGGAGCCA............................................................................................................ 21 2 20 0.30 6 6 0 0 0 0 0
................................................TCGAGTCCACCCGGAGGCGCCA............................................................................................................ 22 2 20 0.30 6 1 4 0 1 0 0
................................................TCGAGTCCGCCCGGGGGCGCCA............................................................................................................ 22 2 20 0.30 6 0 0 6 0 0 0
.................................................CGAGTCCACCCGCGGGCGCCA............................................................................................................ 21 1 20 0.30 6 1 0 5 0 0 0
................................................TCGAGTCCACCCGGGAGCGCCA............................................................................................................ 22 2 20 0.30 6 0 0 6 0 0 0
.................................................CGGGTCCACCCGGGGGCGCAA............................................................................................................ 21 2 20 0.30 6 6 0 0 0 0 0
..................................................GAGTCCACCCGTGGGCGCCA............................................................................................................ 20 1 20 0.30 6 0 3 3 0 0 0
.................................................CGGGTCCACCCCGGGGCGCCA............................................................................................................ 21 2 20 0.30 6 4 0 2 0 0 0
................................................TCGAGTCCACCCGGGGACGCCA............................................................................................................ 22 2 20 0.30 6 2 0 4 0 0 0
................................................TCGAGCCCACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.25 5 0 5 0 0 0 0
.................................................CGCGTCCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.25 5 0 0 5 0 0 0
..................................................GAGTCCACCCGGGGGAGCCA............................................................................................................ 20 1 20 0.25 5 2 0 3 0 0 0
..................................................GAGCCCACCCGGGGGCGCCA............................................................................................................ 20 1 20 0.25 5 3 2 0 0 0 0
..................................................GAGTCCACCCGGGGGCGCAA............................................................................................................ 20 1 20 0.25 5 5 0 0 0 0 0
.................................................CGTGTCCACCCGGGGACGCCA............................................................................................................ 21 2 20 0.25 5 5 0 0 0 0 0
................................................TCGGGTACACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.25 5 5 0 0 0 0 0
...................................................AGTCCACCCGGGGGCGCCTTT.......................................................................................................... 21 1 4 0.25 1 0 0 0 1 0 0
................................................TCGGGTCCACCCGGGGACGCCA............................................................................................................ 22 3 20 0.25 5 4 0 1 0 0 0
...................................................TGTCCACCCGGGGGCGCCTTTT......................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0
................................................TCGTGTCCACCCGGGGGCGCC............................................................................................................. 21 2 20 0.25 5 5 0 0 0 0 0
.....................................................TCCACCCGGGGGCGCCTTTT......................................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0
..................................................GAGTCCACCCGAGGGCGCCA............................................................................................................ 20 1 20 0.25 5 4 1 0 0 0 0
...................................................AGTCCACCCGGGGGCGCC............................................................................................................. 18 0 20 0.25 5 0 0 0 3 0 2
....................................................GTCCACCCGGGGGCGCCTTT.......................................................................................................... 20 1 4 0.25 1 0 0 0 1 0 0
................................................TCGAGTCCACCCCGGGGCGCCA............................................................................................................ 22 2 20 0.25 5 0 0 5 0 0 0
.................................................CGAGTCCACCTGGGGGCGCCA............................................................................................................ 21 1 20 0.25 5 2 0 3 0 0 0
.................................................CGGGTCCACCCGTGGGCGCCA............................................................................................................ 21 2 20 0.25 5 4 0 1 0 0 0
................................................TCGGGTCCAACCGGGGGCGCCA............................................................................................................ 22 3 20 0.25 5 5 0 0 0 0 0
..................................................GAGTCCACCCGGAGGCGCCA............................................................................................................ 20 1 20 0.25 5 2 1 2 0 0 0
.....................................................TCCCCCCGTGGGCGCCATT.......................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0
................................................TCGTGGCCACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.20 4 0 0 4 0 0 0
.................................................CGTGTCCACCCGGGCGCGCCA............................................................................................................ 21 2 20 0.20 4 4 0 0 0 0 0
................................................TCGAGTCCACCCTGGGGCGCCA............................................................................................................ 22 2 20 0.20 4 0 4 0 0 0 0
.................................................CGAGACCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.20 4 0 0 4 0 0 0
.................................................CGAGTCCACCCGAGGGCGCCA............................................................................................................ 21 1 20 0.20 4 0 3 0 1 0 0
.................................................CGAGTCCCCCCGGGGGCGCCA............................................................................................................ 21 1 20 0.20 4 0 1 3 0 0 0
.................................................CGAGTCCGCCCGGGGGCGCCA............................................................................................................ 21 1 20 0.20 4 2 1 1 0 0 0
.................................................CGTGTCCACCCGCGGGCGCCA............................................................................................................ 21 2 20 0.20 4 3 0 1 0 0 0
..................................................GAGTCCACCCGGGGTCGCCA............................................................................................................ 20 1 20 0.20 4 0 2 2 0 0 0
.................................................CGAGTCCACCCGGGGCCGCCA............................................................................................................ 21 1 20 0.20 4 0 0 4 0 0 0
.................................................CGAGTCCACCCGGGGGCGC.............................................................................................................. 19 0 20 0.20 4 0 1 1 2 0 0
................................................TCGAGTCCACCCGGGGGGGCCA............................................................................................................ 22 2 20 0.20 4 0 0 4 0 0 0
.................................................CGAGTGCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.20 4 4 0 0 0 0 0
.....................................................CCCACCCGGGGGCGCCATTT......................................................................................................... 20 2 5 0.20 1 0 0 1 0 0 0
.................................................CGAGTCCACCCGGGGGCTCCA............................................................................................................ 21 1 20 0.20 4 1 0 3 0 0 0
.................................................CGAGTCCACCCGGGTGCGCCA............................................................................................................ 21 1 20 0.20 4 1 3 0 0 0 0
................................................TCGAGACCACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.20 4 4 0 0 0 0 0
...................................................TGTCCACCAGGGGGCGCCTTT.......................................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0
................................................TCGAGTCCACCCGGGGTCGCCA............................................................................................................ 22 2 20 0.20 4 0 0 0 4 0 0
..................................................GAGTCCACCCAGGGGCGCCA............................................................................................................ 20 1 20 0.20 4 4 0 0 0 0 0
................................................TCGAGTCCACTCGGGGGCGCCA............................................................................................................ 22 2 20 0.20 4 4 0 0 0 0 0
..................................................GAGTCCACCCGCGGGCGCCA............................................................................................................ 20 1 20 0.20 4 4 0 0 0 0 0
................................................GCGAGTCCACCCGGGGGCGCCA............................................................................................................ 22 0 20 0.20 4 1 0 3 0 0 0
.....................................................TCCACCCGGGGGCGCCTTTTT........................................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0
....................................................GTCCACCCGGGGGCGCGTTT.......................................................................................................... 20 2 6 0.17 1 0 1 0 0 0 0
..................................................GAGTCCACCCGGGTGCGCCA............................................................................................................ 20 1 20 0.15 3 1 2 0 0 0 0
..................................................GAGTCCACCCGGCGGCGCCA............................................................................................................ 20 1 20 0.15 3 0 0 3 0 0 0
...............................................GTCGGGTCCACCCGGGGGCGCCA............................................................................................................ 23 3 20 0.15 3 0 0 0 3 0 0
................................................TCGAGTCCAACCGGGGGCGCCA............................................................................................................ 22 2 20 0.15 3 0 2 1 0 0 0
..................................................GAGTCCACTCGGGGGCGCCA............................................................................................................ 20 1 20 0.15 3 1 0 1 1 0 0
.................................................CGTGTCCACCCGTGGGCGCCA............................................................................................................ 21 2 20 0.15 3 3 0 0 0 0 0
.................................................CGAGTCCACCCGGTGGCGCCA............................................................................................................ 21 1 20 0.15 3 0 3 0 0 0 0
...............................................TTCGGCTCCACCCGGGGGCGCCA............................................................................................................ 23 3 20 0.15 3 3 0 0 0 0 0
................................................TCGAGTCTACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.15 3 3 0 0 0 0 0
.................................................CGTGTCTACCCGGGGGCGCCA............................................................................................................ 21 2 20 0.15 3 3 0 0 0 0 0
.................................................CGTATCCACCCGGGGGCGCCA............................................................................................................ 21 2 20 0.15 3 3 0 0 0 0 0
.................................................CGGGCCCACCCGGGGGCGCCA............................................................................................................ 21 2 20 0.15 3 3 0 0 0 0 0
................................................TCGGGTCCACCCCGGGGCGCCA............................................................................................................ 22 3 20 0.15 3 0 0 3 0 0 0
................................................TCGGGTCCACCCGGGGGCACCA............................................................................................................ 22 3 20 0.15 3 0 0 0 3 0 0
..................................................GAATCCACCCGGGGGCGCCA............................................................................................................ 20 1 20 0.15 3 2 0 1 0 0 0
..................................................GAGTCCACCCGGGGGCGC.............................................................................................................. 18 0 20 0.15 3 0 1 0 2 0 0
...............................................TTCGAGGCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.15 3 0 0 3 0 0 0
................................................TCGAGTCCACCTGGGGGCGCCA............................................................................................................ 22 2 20 0.15 3 0 0 3 0 0 0
...............................................TTCGTGTTCACCCGGGGGCGCCA............................................................................................................ 23 3 20 0.15 3 3 0 0 0 0 0
................................................TCGAGGCCACCCGGGGCCGCCA............................................................................................................ 22 3 20 0.15 3 0 0 3 0 0 0
................................................TCGAGTCCACCCAGGGGCGCCA............................................................................................................ 22 2 20 0.15 3 0 2 0 0 1 0
..................................................GAGTCCACCCGGGAGCGCCA............................................................................................................ 20 1 20 0.15 3 3 0 0 0 0 0
................................................TCGAGTACACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.15 3 0 0 3 0 0 0
...............................................TTCGAGTCCACCCGGGGGCGCC............................................................................................................. 22 1 20 0.15 3 0 1 0 0 2 0
.................................................CGGGTCCACCCGGGGGCGCC............................................................................................................. 20 1 20 0.15 3 3 0 0 0 0 0
...............................................TTCGACTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.15 3 3 0 0 0 0 0
................................................TCGAGTCCACCCGGGTGCGCCA............................................................................................................ 22 2 20 0.15 3 1 0 2 0 0 0
...................................................TGTCCACCCGGCGGCGCCTTT.......................................................................................................... 21 3 7 0.14 1 0 0 1 0 0 0
.....................................................TCCACCCGGGGGCGCCTTTCC........................................................................................................ 21 3 7 0.14 1 0 1 0 0 0 0
.....................................................TCCACCCGAGGGCGCCTTT.......................................................................................................... 19 2 7 0.14 1 0 0 1 0 0 0
................................................TCGTATCCACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 0 2 0 0
................................................TCGTGTCCACACGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 2 0 0 0
................................................TCGAGGTCACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 2 0 0 0
.................................................CGAGTCCACCCGGGGGTGCCA............................................................................................................ 21 1 20 0.10 2 0 0 2 0 0 0
.................................................CGAGTCCACCCGGCGCCGCCA............................................................................................................ 21 2 20 0.10 2 0 0 2 0 0 0
................................................TCGTGTCCAACCGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 1 0 0 1 0 0
.................................................CGAGTTCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.10 2 2 0 0 0 0 0
.................................................CGTGTCCACCCGGGGGTGCCA............................................................................................................ 21 2 20 0.10 2 1 0 1 0 0 0
.................................................CGTGTCCACCCGGAAGCGCCA............................................................................................................ 21 3 20 0.10 2 2 0 0 0 0 0
..................................................GAGTCCACCCGGGCCCGCCA............................................................................................................ 20 2 20 0.10 2 2 0 0 0 0 0
...............................................TTCGGGTCCACCCTGGGGCGCCA............................................................................................................ 23 3 20 0.10 2 2 0 0 0 0 0
.................................................CGATTCCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.10 2 0 0 2 0 0 0
..............................................TTTCGAGTCCACCCGGGGGCGCCA............................................................................................................ 24 1 20 0.10 2 0 1 0 1 0 0
.................................................CGAGTCCACCAGGGGGCGCCA............................................................................................................ 21 1 20 0.10 2 2 0 0 0 0 0
................................................................................................TAACAATACCGAAAGTTCTTGGGT.......................................................... 24 0 20 0.10 2 0 1 0 1 0 0
................................................TCGAGTACACACGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 2 0 0 0
.................................................CGTGTCCACACGGGGGCGCCA............................................................................................................ 21 2 20 0.10 2 1 1 0 0 0 0
...............................................TTCGAGTCCACCAGGGGGCGCCA............................................................................................................ 23 2 20 0.10 2 0 1 0 0 1 0
...............................................TTCGGGCCCACCCGGGGGCGCCA............................................................................................................ 23 3 20 0.10 2 1 0 1 0 0 0
................................................TCGCGGCCACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 2 0 0 0 0 0
................................................TCGGGTCCACCCGGGGTCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 0 2 0 0
.................................................CGAGTCCACTCGGGGGCGCCA............................................................................................................ 21 1 20 0.10 2 0 1 1 0 0 0
................................................ACGAGTCCACCCGGTGGCGCCA............................................................................................................ 22 2 20 0.10 2 0 0 2 0 0 0
..................................................GAGTCCACCCGGGGGCCCCA............................................................................................................ 20 1 20 0.10 2 0 1 1 0 0 0
................................................TCGAGTCCACCCGGGCGCGCCA............................................................................................................ 22 2 20 0.10 2 0 2 0 0 0 0
................................................TCGAGTCCACACGGGGGCGCCA............................................................................................................ 22 2 20 0.10 2 0 0 1 1 0 0
..............................................TTTCGGGTCCACCCGGGGGCGCCA............................................................................................................ 24 2 20 0.10 2 2 0 0 0 0 0
................................................TCGAGTCCACCCGGGGGCCCCA............................................................................................................ 22 2 20 0.10 2 2 0 0 0 0 0
...............................................ATCGAGTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.10 2 0 0 2 0 0 0
...............................................TTCGCGTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.10 2 0 2 0 0 0 0
..........................................TAAATTGCGAGTCCACCCGGGG.................................................................................................................. 22 0 20 0.10 2 0 1 0 1 0 0
..................................................GAGTACACCCGGGGGCGCCA............................................................................................................ 20 1 20 0.10 2 1 0 1 0 0 0
.................................................TGAGTCCACCCGGGGGCGCCA............................................................................................................ 21 1 20 0.10 2 0 0 1 1 0 0
................................................TCGACTCCACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.10 2 0 2 0 0 0 0
................................................TCGAGTCCACCGGGGGGCGCCA............................................................................................................ 22 2 20 0.10 2 1 0 1 0 0 0
................................................TCGTGTCCACCCGTGGGCGCCA............................................................................................................ 22 3 20 0.10 2 2 0 0 0 0 0
.................................................CGGGTCCACCCGGGGGCGC.............................................................................................................. 19 1 20 0.10 2 0 0 0 2 0 0
...............................................TTCGTGTCCACCCGGTGGCGCCA............................................................................................................ 23 3 20 0.10 2 2 0 0 0 0 0
..................................................GAGTCCACCCCGGGGCGCCA............................................................................................................ 20 1 20 0.10 2 2 0 0 0 0 0
................................................TCGGGTCCTCCCGGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 2 0 0 0
...............................................TTCGTGTCCACCCGTGGGCGCCA............................................................................................................ 23 3 20 0.10 2 2 0 0 0 0 0
................................................TCGTGTCCACCCCGGGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 0 2 0 0
.................................................CGTGTACACACGGGGGCGCCA............................................................................................................ 21 3 20 0.10 2 2 0 0 0 0 0
.................................................CGGCTCCACCCGGGGGCGCCA............................................................................................................ 21 2 20 0.10 2 0 0 2 0 0 0
.................................................CGGGTCCACTCGGGGGCGCCA............................................................................................................ 21 2 20 0.10 2 0 0 2 0 0 0
.........................................................................................................CGAAAGTTCTTGGGTGACT...................................................... 19 0 20 0.10 2 0 1 0 0 0 1
.................................................CGGGTCCACCCGGGGGCTCCA............................................................................................................ 21 2 20 0.10 2 1 0 0 1 0 0
..................................................GAGTCCACCCGGGGGCGCTA............................................................................................................ 20 1 20 0.10 2 2 0 0 0 0 0
................................................TTGAGTCCACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.10 2 0 0 0 2 0 0
.................................................CGGGTCCACCCAAGGGCGCCA............................................................................................................ 21 3 20 0.10 2 2 0 0 0 0 0
.................................................CGAGTCCACCCGGGGTCGCCA............................................................................................................ 21 1 20 0.10 2 0 2 0 0 0 0
.................................................CGTGTCCACTCGGGGGCGCCA............................................................................................................ 21 2 20 0.10 2 2 0 0 0 0 0
................................................TCGAGTCAACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.10 2 0 1 1 0 0 0
.................................................CGAGTCCACCCGGGCACGCCA............................................................................................................ 21 2 20 0.10 2 2 0 0 0 0 0
..................................................GAGTCCACCCGGGGACGCCA............................................................................................................ 20 1 20 0.10 2 0 0 2 0 0 0
.................................................CGTGTCCACCCGGGTGCGCCA............................................................................................................ 21 2 20 0.10 2 2 0 0 0 0 0
................................................GCGAGGCCACCCGGGGGCGCCA............................................................................................................ 22 1 20 0.10 2 0 0 2 0 0 0
................................................TCGAGGCCACCCGGCGGCGCCA............................................................................................................ 22 3 20 0.10 2 0 0 2 0 0 0
.................................................CGGGTCAACCCGGGGGCGCCA............................................................................................................ 21 2 20 0.10 2 2 0 0 0 0 0
.....................................................TCCACCCGGGGGCGCTCTTT......................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0
.................................................CGACTCCACCCGGGGGCGTCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
................................................ACGGGTCCACCCGGGGACGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCCCCCGCGGGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
..................................................GCGGCCACCCGGGGGCGCCA............................................................................................................ 20 2 20 0.05 1 0 0 1 0 0 0
................................................TCGAATCCACCCGGAGGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGGGACCACCCCGGGGCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
................................................TCGAGTCCACCAGGGGGCGCCA............................................................................................................ 22 2 20 0.05 1 0 0 1 0 0 0
.................................................CGTGTCCACCCCTGGGCGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................TGAGGCCACCCGGGGGCGCTA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
..........................................TAAATTGCGAGTCCACCCGGGGGCGCCA............................................................................................................ 28 0 20 0.05 1 0 0 0 1 0 0
................................................TCGAATCCACCCGGGCGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
..................................................GAGACCACCCGGGGACGACA............................................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCGCCCGGGGGCGCC............................................................................................................. 20 1 20 0.05 1 0 0 0 0 1 0
...............................................TGCGTGTCCACCCGGGGGCGCCA............................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0
.................................................CGAGGCCTCCCGCGGGCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
................................................ACGAGTACACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.05 1 0 0 1 0 0 0
...............................................TTTGAGTCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0
...................................................AGTCCACCCGGGGGAGCCA............................................................................................................ 19 1 20 0.05 1 1 0 0 0 0 0
.................................................CGAGACCACCCGGGAGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
..................................................GAGTCCACCCGCCGGCGCCA............................................................................................................ 20 2 20 0.05 1 0 0 1 0 0 0
................................................TCGAGTCCACCCGTGGCCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
................................................ACGTGTCCACCCGGGAGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
................................................TCGAGACCACCCGGGGGCACCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
...............................................CTCGAGTCCACCCGCGGGCGCCA............................................................................................................ 23 3 20 0.05 1 1 0 0 0 0 0
................................................................................................TAACAATAGCGAAAGTTCTTGGG........................................................... 23 1 20 0.05 1 0 0 0 1 0 0
.................................................CGGGTCCACCCGGACGCGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CGTGTCCACCCGGTGGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 0 0 0 1
.................................................CGAGACCACCCGTGCGCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
.................................................CGGGTCCACCCGAGGTCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
..................................................GAGCCCACCCGGGGGCGACA............................................................................................................ 20 2 20 0.05 1 0 0 1 0 0 0
.................................................CGACTCCACCCGGGGGCCCTA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CGGATCCACTCGGGGGCGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CTAGTCCACCCGGGAGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
................................................TCGAGTGCACCCGGGGGCGCCA............................................................................................................ 22 2 20 0.05 1 0 0 1 0 0 0
................................................TCGAGTCCACACGGGAGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGTGTCAACACGGGGGCGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
..............................................CTTCGAGTCCCCCCGGGGGCGCCA............................................................................................................ 24 3 20 0.05 1 0 0 1 0 0 0
.................................................CGACTCCACCCGAGGGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
................................................TCGTGTCCACCCGGGGGTGCCA............................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
.................................................CGTGACCACCCGGAGGCGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CGAGTCCACCCGGGAGCGCCA............................................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0
.................................................CGGGTCCACTCGGGGACGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CCAGCCCACCCGGGGGCGCAA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CGAGTCCACCAGGGGGAGACA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
...............................................TTCGAGTCAACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.05 1 0 0 0 1 0 0
................................................GCGTGTCCACCCGGGGCCGCCA............................................................................................................ 22 2 20 0.05 1 1 0 0 0 0 0
...............................................TTCGAGTCCACCCGGCGGCGCCA............................................................................................................ 23 2 20 0.05 1 0 0 1 0 0 0
................................................TCGAGTACACCCGGAGGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCACCCCGGGGCGCCA............................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0
...................................................ATTCCACCCCGGGGCGCCA............................................................................................................ 19 2 20 0.05 1 1 0 0 0 0 0
................................................TCGGGTCCACCCGGGTGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 0 1 0 0
.................................................CGGGTCCAGCGGGGGGCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
.................................................CGTGTCCACCCGGGGGCGCTA............................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0
................................................TCGAGTCAACCCGCGGGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGTGTCCACAAGGGGGCGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
..................................................GAGGCCACCCGGGGTCGTCA............................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
.................................................CGAGTCCACCCCGGCGCGCCA............................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0
.................................................CGAGTCCACCCCGGATCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCACCCGGGGGCGTCA............................................................................................................ 21 1 20 0.05 1 0 0 1 0 0 0
.................................................CGGGTCCACCCCGGAGCGCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCACCCGGGGACGCCA............................................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0
................................................TCGTGTCCACCAGGGGGCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.....................................................................................................................................................AGAAAAGGGGTGCGTGCGTTC........ 21 0 20 0.05 1 0 1 0 0 0 0
..................................................GAGTCCACCCGGGGCCGCCA............................................................................................................ 20 1 20 0.05 1 1 0 0 0 0 0
...............................................TGCGAGTCCACCCGGGGGCGCGA............................................................................................................ 23 1 20 0.05 1 0 0 1 0 0 0
................................................TCGAGTCCACCCGGTGCCGCCA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCACCCCGGGGCCCCA............................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0
................................................TCGTGCCCACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.05 1 0 1 0 0 0 0
.................................................CGAGTTCCCCCGGGGGCGCCA............................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0
..................................................GAGTCCCCCCCGGGGCGCCA............................................................................................................ 20 2 20 0.05 1 1 0 0 0 0 0
.................................................CGAGTCCACCCGGGGGTGACA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
.................................................CGACTCCACCCGGGGCCTCCA............................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCACCCGGGGGCGTC............................................................................................................. 20 1 20 0.05 1 0 0 1 0 0 0
..............................................GTGCGAGTCCACCCGCGGGCGCCA............................................................................................................ 24 2 20 0.05 1 1 0 0 0 0 0
...............................................TTCGAGCCCACCCGGGGGCGCCA............................................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0
...................................................ATTCCACCCGGGGTCGCCA............................................................................................................ 19 2 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTCCACACGGGCGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
...............................................TTCGACACCACCCGGGGGCGCCA............................................................................................................ 23 3 20 0.05 1 1 0 0 0 0 0
..................................................GAGCACACCCGGGCGCGCCA............................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
.................................................CGGGTCCACCCGGGGAAGCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
..............................................GTGCGAGTCCACCCGAGGGCGCCA............................................................................................................ 24 2 20 0.05 1 0 0 1 0 0 0
............................................................................................TAAATAACAATACCGAAAGTTCTTGGG........................................................... 27 0 20 0.05 1 0 0 0 1 0 0
..............................................GTGCGGGGCCACCCGGGGGCGCCA............................................................................................................ 24 3 20 0.05 1 0 0 1 0 0 0
................................................TCGAGCCCACCCGGGGGCGCGA............................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0
.................................................CGAGTGCATCCGGGGGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
....................................TACGTTTAAATTGCGAGTCCACCCG..................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
................................................TCGTGTCAACCCGGGGGCGCCA............................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
...............................................GTCGAGTCCACCCGGGCGCGCCA............................................................................................................ 23 3 20 0.05 1 1 0 0 0 0 0
.................................................CGAGTCCCCCCGGTGGCGCCA............................................................................................................ 21 2 20 0.05 1 0 0 1 0 0 0
...............................ATATATACGTTTAAATTGCGAGTCCA......................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0
.................................................CGAGTCCACCCCGGCGCCCCA............................................................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.................................................CGTGTCCACCCGGGGGCACCA............................................................................................................ 21 2 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

TGACAGTGAAAAACGGAAAGGTAAACTTAATTATATATGCAAATTTAACGCTCAGGTGGGCCCCCGCGGTAATTTAAAATCTTATCAAAAAGATTTATTGTTATGGCTTTCAAGAACCCACTGACGTTAAAAAATAAATTATGCTGCTTTCTTTTCCCCACGCACGCAAGCTAAAGTC
********************************************........(((((((.((((.((((((((((..........(((((((......)))))))..............)))))))))))))))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
........................................................................................................................................................TTTCCCCACGCACGCAAGCTAA.... 22 0 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_592:802-979 + dpe_320 AC-TGT---CACT--------------TTT---TGCCTTTCCA--TTTGAATT-----------------------------------------------------AATATATACGTTTAAATT-GCGAGTCCACCCG--GGGG--------------CGC---------------CATTAAATTTTA-GAATAGTTTTTCTAAATAACAA-TACCG------------AAAG-TTCTTGGG-------TGACTGC-AATTTTTTAT--------------------------------------TTAA--TACGACGA-A-A-GAAAA---GGGGTGC-GTGCGTTCGAT--TTCAG
dp5 Unknown_group_484:121-297 - CATATA---TTC-A----AACAATTTCTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-TGGCAAAG-CGGGGCGAATTCGC-CAAGAGCGAGAGA-----ACGAGCTTTTAT--------------------------TGCGCTCCCGC-TTTGCCCTAGC-CTAACTTACACTAGA----------------------------------CTTCATGAAA-T------ACTATCC-------TAATAAC-AAATTATTAT-------------------------------TATTCAAATGG--C-----GCT-------------------------------------A
droVir3 scaffold_12734:485314-485449 - TG-ATATGATT------CGACAACTGAATTTAA---GCCTA-C--AT-----T-ACGCTAAGG-CAGCGAAG-CGGGGCGAATTCGCTCGAAAGCGAGGGA-----TACAGCTTTA-T--------------------------TGCAATCTCGC-TCCGCCCTAAACCTAACTTACACTGCA----------------------------------CTTCATG--------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13274:223087-223264 - AT-ATA---TTC-ATATCAACAA--AAACTTAA---GCCTA-G--CT-----T-AT-CTAATG-CGGCGAAG-CGGGGCGAATTCATGGGAGAGCGCAAGT-----GAGAGCTTCACT--------------------------TGCGCTCCCGC-TCCGCCCTAAA-CTAACTTATACTAGA----------------------------------CTTCATAAAA-T------TC-----GACT---TAATTAT-CTACATTAAT-------------------------------TATACAAATGT--C-----ACC-------------------------------------A
droBip1 scf7180000391588:5693-5852 - AT-ATT---TCT-CT----------AATCTTAA---GCCCA-A--CT-----T-AT-CCATTG-CGGCGAAG-CGGGGCGAATTCGTACAAGAGCGAATA-------TGAGCAT-------------------------------TCGCTCCCGG-TCCGCCCTAAG-CTATTTTAGACTAGA----------------------------------TTTAGAGACT--------------------AA------------------------CAATTCAACTACAAAATACAATTTTTATACCCTT--------------------------------------------------G
droKik1 scf7180000302298:3465-3659 + AT-TTT---ATT-ATTTTATAA--------------ATATGCAAAATACAAAT-----------------------------------------------------AATAGATATATTTACATTTATAAATGAATAAGTAGGT----------------------------ATGTATATTGGATTTTCTAATTAGTTTATTTGAATAAACAAAACCG------------AGA---ACTT-GG-------TGGCAAG-AAAT-------------------------------AATTTTTTAATATTTGGCAAACGACGA-AAACGAGAG---GCGATGAGGTGCGTTAGGT--TT--C
droFic1 scf7180000453885:476-646 + AC-TGT---CACT-TTTAAAAAA--TGTGT---TGCCTTTA-A--TT-----T-AT-TAAT--------------------------------------------T---------------------TAGTCCACCCG--GGGG--------------CGC---------------CATGAAAATTTA-GAATAGTTTTTCTAAATATTAATAACCG------------AAAA---ATGGGG-------TGGCTAA-TT-AATTTAT--TCGGCAA------------------------------------ACAACGA-A-ACGAAAA---AAAATGC-GTGCGCTCGAT--CAAAC
droEle1 scf7180000486677:6834-7002 + AC-TGT---CACTAT----------ATTGT---TGCCTTCT-A--TT-----A-ATT--------------------------------------------GTTCA---------------------CAGTCCACCCG--GGGG--------------CGC---------------CATGAAGACTAA-GAATATTTTTTCTAATTGA-AATAAC-GTTA---------AGG--AACTT-GG-------TGGTGTGAACTTTGC--T--TGGGCAAAT--------------------------------------CGA-CAACGAAAA-GAAAAGTGC-GTGCGATCGAAACGAAAC
droRho1 scf7180000775983:834-1000 - AT-ATA---TTT-----CGACAAA-GAACTTAGA--GCCTA-G--CT-----T-AA-CGAAGGTTGGCGACGACGGGGCGACTTCGC-CAAGAGCGAGAG-------AAAACTTTA-T--------------------------TGTGCTCCCGCCTTCGCCCTAAA-CTAACTTACACTAAA----------------------------------CTTCAAGTTTTT------A------TTTTTAA------C-AAATTTCAAT------------------ATA-----------ATTCAAG---------------------------------------------------T
droBia1 scf7180000301478:1208-1320 + AC-TGT---CACT--------------TTT---TGCCTTCA-A--TT---ATT---A--------------------------------------------TCATA---------------------TAACCCACCCG--GGAG--------------CGC---------------CATAAAAATGTA-GAATAATTTTTCTAAT-----A-TACCG------------AAAA--ACTTTGC-------TGGCTAG-ACATTTTTAT------------------------------------------------------------------------------------------T
droTak1 scf7180000415375:2235-2406 + AC-TGT---CACT--------------TGT---TGCCTTTA-A--TT---ATTAATA--------------------------------------------GTTTA---------------------AAGTCCACCCG--GGGG--------------CGC---------------CATGAAAATTTA-GAATAGTTTTTCCAAATAAGAA-AACCG------------AAAAATACTTTGG-------TGGCGAT-AAACTTTAATTTTAGGCAAAG--------------------------------------CGAAAAACGAGAATGAGAAATAC-GTGTGGTCGAT--CTAAA
droSim2 node_28841:35-163 - CT-ATT---TAA-----CATATGT-GTTCTTAG---GCCTA-G--CT-----T-AA-CAGAGGTTGGCGAAGACGGGGCGAATTCGC-AAAGAGCGAGAG-------AGAACTTTA-T--------------------------TATGCTCCCGCCTTCGCCCTAAA-CTAACTTACACTAGA----------------------------------CTTCA----------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUh_001:33927-34094 - TCTATT---TTA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----T-AA-CAGAGGTTGGTGAAGGCGGGGCGAATTCGC-AAAGAGCGAGAG-------AAAGCTTTA-T--------------------------TATGCTCCCGCCTTCGCCCTAAA-CTAACTTACACTAGA----------------------------------CTTAAAATTTTT------TC-----TACTTAA---CAAT-AAACTAC---------------------AAA----------CAAT-AAA---------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AC-TGT---CACT--------------TTT---TGCCTTTCCA--TTTGAATT-----------------------------------------------------AATATATACGTTTAAATT-GCGAGTCCACCCG--GGGG--------------CGC---------------CATTAAATTTTA-GAATAGTTTTTCTAAATAACAA-TACCG------------AAAG-TTCTTGGG-------TGACTGC-AATTTTTTAT--------------------------------------TTAA--TACGACGA-A-A-GAAAA---GGGGTGC-GTGCGTTCGAT--TTCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................CGAGTCCACCCG--GGGG--------------CGC---------------CA....................................................................................................................................................................................2120110.502210050709590744
...............................................................................................................................GAGTCCACCCG--GGGG--------------CGC---------------CA....................................................................................................................................................................................202091.25182501612163401009
..................................................................................................................................TCCACCCG--GGGG--------------CGC---------------CATT..................................................................................................................................................................................19123.00230406130
..................................................................................................................................TCCACCCG--GGGG--------------CGC---------------CATTT.................................................................................................................................................................................2016.006010023
.................................................................................................................................GTCCACCCG--GGGG--------------CGC---------------CATT..................................................................................................................................................................................2014.004000031
..................................................................................................................................TCCACCCG--GGGG--------------CGC---------------CATTTT................................................................................................................................................................................2111.001000010
................................................................................................................................AGTCCACCCG--GGGG--------------CGC---------------CATTT.................................................................................................................................................................................2211.001010000
..................................................................................................................................TCCACCCG--GGGG--------------CGC---------------CATTG.................................................................................................................................................................................2011.001010000
...................................................................................................................................CCACCCG--GGGG--------------CGC---------------CATT..................................................................................................................................................................................1811.001000010
..................................................................................................................................TCCACCCG--GGGG--------------CGC---------------CATTA.................................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................................................................................................................TAA--TACGACGA-A-A-GAAAA---GGG.......................21200.90180000018
..............................................................................................................................CGAGTCCACCCG--GGGG--------------CGC---------------C.....................................................................................................................................................................................20200.8517093500
.............................................................................................................................................................................................................TAACAA-TACCG------------AAAG-TTCTTGGG-------.............................................................................................................23200.55110110000
...............................................................................................................................GAGTCCACCCG--GGGG--------------CGC---------------C.....................................................................................................................................................................................19200.5511050060
..................................................................................................................................................................................................................................................................................................................TAA--TACGACGA-A-A-GAAAA---GGGGT.....................23200.408000008
..................................................................................................................................................................................................................................................................................................................TAA--TACGACGA-A-A-GAAAA---GGGG......................22200.357000007
................................................................................................................................AGTCCACCCG--GGGG--------------CGC---------------C.....................................................................................................................................................................................18200.255230000
..............................................................................................................................CGAGTCCACCCG--GGGG--------------CGC---------------......................................................................................................................................................................................19200.204020011
.............................................................................................................................GCGAGTCCACCCG--GGGG--------------CGC---------------CA....................................................................................................................................................................................22200.204000130
...............................................................................................................................GAGTCCACCCG--GGGG--------------CGC---------------......................................................................................................................................................................................18200.153020001
.............................................................................................................................................................................................................TAACAA-TACCG------------AAAG-TTCTTGGG-------T............................................................................................................24200.102010001
......................................................................................................................TAAATT-GCGAGTCCACCCG--GGG.......................................................................................................................................................................................................................22200.102010001
.......................................................................................................................................................................................................................CG------------AAAG-TTCTTGGG-------TGACT........................................................................................................19200.102100001
......................................................................................................................TAAATT-GCGAGTCCACCCG--GGGG--------------CGC---------------CA....................................................................................................................................................................................28200.051010000
..................................................................................................................................................................................................................................................................................................................................A-GAAAA---GGGGTGC-GTGCGTTC..........21200.051000001
.........................................................................................................................................................................................................TAAATAACAA-TACCG------------AAAG-TTCTTGGG-------.............................................................................................................27200.051010000
................................................................................................................TACGTTTAAATT-GCGAGTCCACCCG--..........................................................................................................................................................................................................................25200.051000001
...........................................................................................................ATATATACGTTTAAATT-GCGAGTCCA................................................................................................................................................................................................................................26200.051010000
dp5
CATATA---TTC-A----AACAATTTCTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-TGGCAAAG-CGGGGCGAATTCGC-CAAGAGCGAGAGA-----ACGAGCTTTTAT--------------------------TGCGCTCCCGC-TTTGCCCTAGC-CTAACTTACACTAGA----------------------------------CTTCATGAAA-T------ACTATCC-------TAATAAC-AAATTATTAT-------------------------------TATTCAAATGG--C-----GCT-------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGG..........................................................................................................................................................................................................................................................................................21208.80176000000017600
....................................................T-AC-CTACGG-TGGCAAAG-CGGGG........................................................................................................................................................................................................................................................................................22207.95159015900000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGG.........................................................................................................................................................................................................................................................................................22205.70114000000072420
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGGCG......................................................................................................................................................................................................................................................................................25203.206406400000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGA..........................................................................................................................................................................................................................................................................................21202.555105100000000
......................................................AC-CTACGG-TGGCAAAG-CGGGG........................................................................................................................................................................................................................................................................................21201.402802800000000
..............................................................................................................................................................................................................................TGAAA-T------ACTATCC-------TAATAAC-AAATTA...............................................................................................2660.8350500000000
................................................................................................................TTTTAT--------------------------TGCGCTCCCGC-TTTG......................................................................................................................................................................................................21200.751501500000000
................................................................................................................................................TGCGCTCCCGC-TTTGCCCTAGC-C.............................................................................................................................................................................................23200.701401400000000
....................................................T-AC-CTACGG-TGGCAAAG-CGGGGCG......................................................................................................................................................................................................................................................................................24200.701401400000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGT..........................................................................................................................................................................................................................................................................................21200.651301300000000
.......................................TA-C--CT-----T-AC-CTACGG-TGGCAAAG-CGGG.........................................................................................................................................................................................................................................................................................26200.501000000000100
..........................................................TACGG-TGGCAAAG-CGGGGCGAA....................................................................................................................................................................................................................................................................................22200.501001000000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGG........................................................................................................................................................................................................................................................................................23200.4590000000900
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGA........................................................................................................................................................................................................................................................................................23200.4590900000000
.............................................CT-----T-AC-CTACGG-TGGCAAAG-CGGG.........................................................................................................................................................................................................................................................................................23200.4590900000000
...................................................................................TCGC-CAAGAGCGAGAGA-----ACGAGCTT....................................................................................................................................................................................................................................................25200.4590800001000
.........................TCTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................25170.4170610000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGGCGT.....................................................................................................................................................................................................................................................................................26200.4080800000000
....TA---TTC-A----AACAATTTCTTCTAA---GCC...............................................................................................................................................................................................................................................................................................................................24110.3640211000000
..........................................................TACGG-TGGCAAAG-CGGGGCGA.....................................................................................................................................................................................................................................................................................21200.3570000000700
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGGT.......................................................................................................................................................................................................................................................................................24200.3060600000000
.......................TTTCTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................27170.2950200000030
........................TTCTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................26170.2950300000020
.................................................................................................................TTTAT--------------------------TGCGCTCCCGC-TTTG......................................................................................................................................................................................................20200.2550500000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CA...........................................................................................................................................................................................................................................................................................20200.2550500000000
....................................................T-AC-CTACGG-TGGCAAAG-CGGG.........................................................................................................................................................................................................................................................................................21200.2550000500000
...................................................................................TCGC-CAAGAGCGAGAGA-----ACGAGC......................................................................................................................................................................................................................................................23200.2040400000000
..........................................................TACGG-TGGCAAAG-CGGGGCGAATT..................................................................................................................................................................................................................................................................................24200.2040000001300
..............................................T-----T-AC-CTACGG-TGGCAAAG-CAA..........................................................................................................................................................................................................................................................................................21200.2040400000000
...................................................................................TCGC-CAAGAGCGAGAGA-----ACGAGCTTT...................................................................................................................................................................................................................................................26200.2040300001000
.............................................................................................................................................................................................................................ATGAAA-T------ACTATCC-------TAATAAC-AAATTA...............................................................................................2760.1710100000000
................................................................................................................................................................................................................................AAA-T------ACTATCC-------TAATAAC-AAATTAT..............................................................................................2560.1710010000000
..............................................................................................................................................................................................................................TGAAA-T------ACTATCC-------TAATAAC-AAATTAT..............................................................................................2760.1710100000000
................................................................................................................................................TGCGCTCCCGC-TTTGCCCTAGC-CTA...........................................................................................................................................................................................25200.1530300000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-AAA..........................................................................................................................................................................................................................................................................................21200.1530300000000
.........................................................................................................................................................................TAACTTACACTAGA----------------------------------CTTCATG......................................................................................................................................21200.1530300000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CG...........................................................................................................................................................................................................................................................................................20200.1530010002000
....................................................T-AC-CTACGG-TGGCAAAG-AAA..........................................................................................................................................................................................................................................................................................20200.1530300000000
..........................................................TACGG-TGGCAAAG-CGGGGCG......................................................................................................................................................................................................................................................................................20200.1530000000030
................................................................TGGCAAAG-CGGGGCGAATTCGC-..............................................................................................................................................................................................................................................................................22200.1530000000300
..............................................................................................................................................................................................................................TGAAA-T------ACTATCC-------TAATAAC-AAAT.................................................................................................2470.1410100000000
...............................................................................................................................................................................................................................GAAA-T------ACTATCC-------TAATAAC-AAAT.................................................................................................2370.1410100000000
...........................TTCTAA---GCCTA-C--CT-----T-AC-CTACGG-TGG...................................................................................................................................................................................................................................................................................................26160.1320200000000
.........TTC-A----AACAATTTCTTCTAA---GCCTA-C--CT-----..................................................................................................................................................................................................................................................................................................................27100.1010100000000
................................................................TGGCAAAG-CGGGGCGAATTCGC-CAAGAG........................................................................................................................................................................................................................................................................28200.1020000000020
................................................................TGGCAAAG-CGGGGCGAATTCGC-CAAG..........................................................................................................................................................................................................................................................................26200.1020000002000
....................................................T-AC-CTACGG-TGGCAAAG-AA...........................................................................................................................................................................................................................................................................................19200.1020000200000
..........................................................................................................................................................C-TTTGCCCTAGC-CTAACTTACACTA.................................................................................................................................................................................25200.1020200000000
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTTGCCCTAGA-..............................................................................................................................................................................................26200.1020200000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGTTT......................................................................................................................................................................................................................................................................................25200.1020200000000
....TA---TTC-A----AACAATTTCTTCTAA---GCCTA-C--CT-----..................................................................................................................................................................................................................................................................................................................29100.1010100000000
..................................................................................TTCGC-CAAGAGCGAGAGA-----ACGAGC......................................................................................................................................................................................................................................................24200.1020200000000
.....................................................................................................................................................................GC-CTAACTTACACTAGA----------------------------------CTTCAT.......................................................................................................................................23200.1020000000200
....................................................T-AC-CTACGG-TGGCAAAG-CGG..........................................................................................................................................................................................................................................................................................20200.1020000002000
..........TC-A----AACAATTTCTTCTAA---GCCTA-C--CT-----..................................................................................................................................................................................................................................................................................................................26100.1010100000000
......................................................AC-CTACGG-TGGCAAAG-CGG..........................................................................................................................................................................................................................................................................................19200.1020000000200
.............................................................................................................................................................................TTACACTAGA----------------------------------CTTCATGAAA-T------ACT........................................................................................................................24200.1020000000020
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTTGCCCTAGC-A.............................................................................................................................................................................................27200.1020200000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-TA...........................................................................................................................................................................................................................................................................................20200.1020200000000
..TATA---TTC-A----AACAATTTCTTCTAA---GCC...............................................................................................................................................................................................................................................................................................................................26100.1010100000000
...ATA---TTC-A----AACAATTTCTTCTAA---GCCT..............................................................................................................................................................................................................................................................................................................................26100.1010100000000
...............................................................................................GAGAGA-----ACGAGCTTTTAT--------------------------TGCGCT................................................................................................................................................................................................................24200.1020200000000
....TA---TTC-A----AACAATTTCTTCTAA---GC................................................................................................................................................................................................................................................................................................................................23110.0910010000000
..............................TAA---GCCTA-C--CT-----T-AC-CTACGG-TGGCAAAG-C............................................................................................................................................................................................................................................................................................29150.0710100000000
..............................TAA---GCCTA-C--CT-----T-AC-CTACGG-TGGCAAAG-.............................................................................................................................................................................................................................................................................................28150.0710100000000
.....................................................................................................................................................................................................................................................................TATTAT-------------------------------TATTCAAATGG--C-----G........................................19150.0710100000000
............................TCTAA---GCCTA-C--CT-----T-AC-CTACGG-TGG...................................................................................................................................................................................................................................................................................................25160.0610100000000
..............................TAA---GCCTA-C--CT-----T-AC-CTACGG-TGG...................................................................................................................................................................................................................................................................................................23160.0610100000000
..............................TAA---GCCTA-C--CT-----T-AC-CTACGG-TGGCA.................................................................................................................................................................................................................................................................................................25160.0610100000000
........................TTCTTCTAA---GCCTA-C--CT-----T-AC-CTACG........................................................................................................................................................................................................................................................................................................25170.0610100000000
.......................TTTCTTCTAA---GCCTA-C--CT-----T-AC-CTA..........................................................................................................................................................................................................................................................................................................24170.0610100000000
..............................TAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................20170.0610100000000
.............................CTAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................21170.0610100000000
......................ATTTCTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................28170.0610000000100
..........................CTTCTAA---GCCTA-C--CT-----T-AC-CTACGG-......................................................................................................................................................................................................................................................................................................24170.0610100000000
...............................................................................................................................................................GCCCTAGC-CTAACTTACACTAGA----------------------------------CTT..........................................................................................................................................26200.0510100000000
...........................................................................................GAGCGAGAGA-----ACGAGCTTTTAT--------------------------......................................................................................................................................................................................................................22200.0510100000000
...................................................................................................GA-----ACGAGCTTTTAT--------------------------TGCGCTC...............................................................................................................................................................................................................21200.0510000010000
..............................................................................................................................................................TGCCCTAGC-CTAACTTACAC...................................................................................................................................................................................20200.0510100000000
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTTGA.....................................................................................................................................................................................................20200.0510100000000
................................................................................................................TTTTAT--------------------------TGCGCTCCCGC-TTTGCCC...................................................................................................................................................................................................24200.0510001000000
..................................................................GCAAAG-CGGGGCGAATTCGA-..............................................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................TCGC-CAAGAGCGAGAGA-----ACGAG.......................................................................................................................................................................................................................................................22200.0510100000000
..............................................................................CGAATTCGC-CAAGAGCGAGAG..................................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................CGAGAGA-----ACGAGCTTTTAT--------------------------TGCGCTC...............................................................................................................................................................................................................26200.0510100000000
.......................................................................G-CGGGGCGAATTCGC-CAAGAGC.......................................................................................................................................................................................................................................................................22200.0510000000010
CATATA---TTC-A----AACAATTTCTTCT.......................................................................................................................................................................................................................................................................................................................................23200.0510100000000
................................................................................................................................................................................................................................AAA-T------ACTATCC-------TAAT.........................................................................................................15200.0510000000100
...........................................................................................................CGAGCTTTTAT--------------------------TGCGCTCCCGC-TTTG......................................................................................................................................................................................................26200.0510100000000
................................................................TGGCAAAG-CGGGGCGAATTCGC-CAA...........................................................................................................................................................................................................................................................................25200.0510010000000
..........................................................................................................................................................................AACTTACACTAGA----------------------------------CTTCATGA.....................................................................................................................................21200.0510100000000
................................................................TGGCAAAG-CGGGGCGAATTCGC-A.............................................................................................................................................................................................................................................................................23200.0510000100000
....................................................T-AC-CTACGG-TGGCAAAG-CGGGGCGA.....................................................................................................................................................................................................................................................................................25200.0510010000000
.........................................................................CGGGGCGAATTCGC-CAAGAGCGAGAGA-----A...........................................................................................................................................................................................................................................................28200.0510100000000
..............................................................................CGAATTCGC-CAAGAGCGAGAGA-----AC..........................................................................................................................................................................................................................................................24200.0510100000000
......................................................................AG-CGGGGCGAATTCGC-CAAGAGC.......................................................................................................................................................................................................................................................................23200.0510100000000
......................................................AC-CTACGG-TGGCAAAG-CGGG.........................................................................................................................................................................................................................................................................................20200.0510010000000
.............................................CT-----T-AC-CTACGG-TGGCAAAG-C............................................................................................................................................................................................................................................................................................20200.0510100000000
...........................................................................................GAGCGAGAGA-----ACGAGCTTTTAT--------------------------TGCGC.................................................................................................................................................................................................................27200.0510100000000
...................................................................................TCGC-CAAGAGCGAGAGA-----ACGA........................................................................................................................................................................................................................................................21200.0510100000000
.....................................................................AAG-CGGGGCGAATTCGC-CAAG..........................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................TCGC-CAAGAGCGAGAGA-----AAA.........................................................................................................................................................................................................................................................20200.0510100000000
....................................................................................................................................................CTCCCGC-TTTGCCCTAGC-CTAAC.........................................................................................................................................................................................23200.0510100000000
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTG.......................................................................................................................................................................................................18200.0510100000000
........................................................................................CAAGAGCGAGAGA-----ACGAGCT.....................................................................................................................................................................................................................................................20200.0510100000000
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTTGCCCTACA-..............................................................................................................................................................................................26200.0510010000000
.........................................................................................................................................................................TAACTTACACTAGA----------------------------------CTTCATGAAA-T------...........................................................................................................................25200.0510100000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGCA.......................................................................................................................................................................................................................................................................................24200.0510100000000
....................................................T-AC-CTACGG-TGGCAAAG-CGGGTT.......................................................................................................................................................................................................................................................................................23200.0510100000000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGC.........................................................................................................................................................................................................................................................................................22200.0510000100000
...........................................................................................................CGAGCTTTTAT--------------------------TGCGCTCCCGC-TT........................................................................................................................................................................................................24200.0510010000000
......................................................................................C-CAAGAGCGAGAGA-----ACGAGC......................................................................................................................................................................................................................................................20200.0510000001000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGGCGAA....................................................................................................................................................................................................................................................................................27200.0510000001000
..............................................T-----T-AC-CTACGG-TGGCAAAG-CGGGGCGAAT...................................................................................................................................................................................................................................................................................28200.0510000000100
.........................................................................................................................................................................TAACTTACACTAGA----------------------------------CTTCATGAAA-..................................................................................................................................24200.0510100000000
...........................................................................................GAGCGAGAGA-----ACGAGCTTTTAT--------------------------TGC...................................................................................................................................................................................................................25200.0510100000000
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTTGCCC...................................................................................................................................................................................................22200.0510000000100
..................................................................................................................TTAT--------------------------TGCGCTCCCGC-TTTGCCA...................................................................................................................................................................................................22200.0510100000000
....................................................T-AC-CTACGG-TGGCAAAG-CGT..........................................................................................................................................................................................................................................................................................20200.0510000000100
....................................................T-AC-CTACGG-TGGCAAAG-CGGGGCGT.....................................................................................................................................................................................................................................................................................25200.0510100000000
...........................................................................................GAGCGAGAGA-----ACGAGCTTTTAT--------------------------TGCGCA................................................................................................................................................................................................................28200.0510100000000
..................................................................................TTCGC-CAAGAGCGAGAGA-----ACGAG.......................................................................................................................................................................................................................................................23200.0510100000000
....................................................T-AC-CTACGG-TGGCAAAG-CGGGGCGAAT...................................................................................................................................................................................................................................................................................27200.0510000100000
...........................................................................................................................................................................................................................TCATGAAA-T------ACTATCC-------TAATAAC-AA...................................................................................................25200.0510100000000
............................................................CGG-TGGCAAAG-CGGGGCGAATTC.................................................................................................................................................................................................................................................................................23200.0510001000000
................................................................TGGCAAAG-CGGGGCGAATTCGA-..............................................................................................................................................................................................................................................................................22200.0510000000100
...........................................................................................................................................................................ACTTACACTAGA----------------------------------CTTCATGAAA-T------AC.........................................................................................................................25200.0510000000100
droVir3
TG-ATATGATT------CGACAACTGAATTTAA---GCCTA-C--AT-----T-ACGCTAAGG-CAGCGAAG-CGGGGCGAATTCGCTCGAAAGCGAGGGA-----TACAGCTTTA-T--------------------------TGCAATCTCGC-TCCGCCCTAAACCTAACTTACACTGCA----------------------------------CTTCATG--------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................TAAACCTAACTTACACTGCA----------------------------------C............................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...ATATGATT------CGACAACTGGT..........................................................................................................................................................................................................................................................................................................................................1920.501000000000000100000000000000000000000000000000000000000000000000
droAna3
AT-ATA---TTC-ATATCAACAA--AAACTTAA---GCCTA-G--CT-----T-AT-CTAATG-CGGCGAAG-CGGGGCGAATTCATGGGAGAGCGCAAGT-----GAGAGCTTCACT--------------------------TGCGCTCCCGC-TCCGCCCTAAA-CTAACTTATACTAGA----------------------------------CTTCATAAAA-T------TC-----GACT---TAATTAT-CTACATTAAT-------------------------------TATACAAATGT--C-----ACC-------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................TTCATGGGAGAGCGCAAGT-----GAGAGCC.....................................................................................................................................................................................................................................................26204.90980980000
..................................................................................TTCATGGGAGAGCGCAAGT-----GAGAGCT.....................................................................................................................................................................................................................................................26204.25858500000
......................................................................................TGGGAGAGCGCAAGT-----GAGAGCTTCACT--------------------------......................................................................................................................................................................................................................27201.70340340000
....................................................................................................T-----GAGAGCTTCACT--------------------------TGCGCTCCCGC-TC........................................................................................................................................................................................................26200.95190190000
....TA---TTC-ATATCAACAA--AAACTTAA---GCC...............................................................................................................................................................................................................................................................................................................................26200.70140140000
.......................................TA-G--CT-----T-AT-CTAATG-CGGCGAAG-CGG..........................................................................................................................................................................................................................................................................................25200.5010910000
....................................................................................................T-----GAGAGCTTCACT--------------------------TGCGCTCCCGC-..........................................................................................................................................................................................................24200.255050000
..............................................T-----T-AT-CTAATG-CGGCGAAG-CGGGGCGA.....................................................................................................................................................................................................................................................................................26200.204400000
....................................................................................................T-----GAGAGCTTCACT--------------------------TGCGCTCCCG............................................................................................................................................................................................................23200.204400000
..................................................................................TTCATGGGAGAGCGCAAGT-----GAGA........................................................................................................................................................................................................................................................23200.153000030
................................................................................................CAAGT-----GAGAGCTTCACT--------------------------TGCGCC................................................................................................................................................................................................................23200.153030000
...............ATCAACAA--AAACTTAA---GCCT..............................................................................................................................................................................................................................................................................................................................20200.153030000
................................................................................................................TTCACT--------------------------TGCGCTCCCGC-TCCGCCC...................................................................................................................................................................................................24200.102200000
..............................................T-----T-AT-CTAATG-CGGCGAAG-CGG..........................................................................................................................................................................................................................................................................................21200.102200000
.......................................TA-G--CT-----T-AT-CTAATG-CGGCGAAG-CG...........................................................................................................................................................................................................................................................................................24200.102200000
....................................................T-AT-CTAATG-CGGCGAAG-CGGGGCGA.....................................................................................................................................................................................................................................................................................25200.102200000
....................................................T-AT-CTAATG-CGGCGAAG-CGGGGCG......................................................................................................................................................................................................................................................................................24200.102200000
...................................................................................................GT-----GAGAGCTTCACT--------------------------TGCGCTCCCG............................................................................................................................................................................................................24200.051100000
................................................................................................CAAGT-----GAGAGCTTCACT--------------------------TGCGCTC...............................................................................................................................................................................................................24200.051001000
............................................................................................................GAGCTTCACT--------------------------TGCGCTCCCGC-TCCGC.....................................................................................................................................................................................................26200.051001000
......................................................AT-CTAATG-CGGCGAAG-CGGG.........................................................................................................................................................................................................................................................................................20200.051010000
.....................AA--AAACTTAA---GCCTA-G--CC-----..................................................................................................................................................................................................................................................................................................................18200.051010000
...................ACAA--AAACTTAA---GCCTA-G--CT-----..................................................................................................................................................................................................................................................................................................................20200.051010000
.........................................................CTAATG-CGGCGAAG-CGGGGCG......................................................................................................................................................................................................................................................................................21200.051100000
................................................................................AATTCATGGGAGAGCGCAAGT-----GAGA........................................................................................................................................................................................................................................................25200.051010000
..................................................................GCGAAG-CGGGGCGAATTCATGGG............................................................................................................................................................................................................................................................................23200.051000001
..............................................T-----T-AT-CTAATG-CGGCGAAG-CGGGGC.......................................................................................................................................................................................................................................................................................24200.051010000
..............................................T-----T-AT-CTAATG-CGGCGAAG-CGGGGCGAAT...................................................................................................................................................................................................................................................................................28200.051100000
droBip1
AT-ATT---TCT-CT----------AATCTTAA---GCCCA-A--CT-----T-AT-CCATTG-CGGCGAAG-CGGGGCGAATTCGTACAAGAGCGAATA-------TGAGCAT-------------------------------TCGCTCCCGG-TCCGCCCTAAG-CTATTTTAGACTAGA----------------------------------TTTAGAGACT--------------------AA------------------------CAATTCAACTACAAAATACAATTTTTATACCCTT--------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droKik1
AT-TTT---ATT-ATTTTATAA--------------ATATGCAAAATACAAAT-----------------------------------------------------AATAGATATATTTACATTTATAAATGAATAAGTAGGT----------------------------ATGTATATTGGATTTTCTAATTAGTTTATTTGAATAAACAAAACCG------------AGA---ACTT-GG-------TGGCAAG-AAAT-------------------------------AATTTTTTAATATTTGGCAAACGACGA-AAACGAGAG---GCGATGAGGTGCGTTAGGT--TT--CSizeHit CountTotal NormTotal
No Reads
droFic1
AC-TGT---CACT-TTTAAAAAA--TGTGT---TGCCTTTA-A--TT-----T-AT-TAAT--------------------------------------------T---------------------TAGTCCACCCG--GGGG--------------CGC---------------CATGAAAATTTA-GAATAGTTTTTCTAAATATTAATAACCG------------AAAA---ATGGGG-------TGGCTAA-TT-AATTTAT--TCGGCAA------------------------------------ACAACGA-A-ACGAAAA---AAAATGC-GTGCGCTCGAT--CAAACSizeHit CountTotal NormTotal
No Reads
droEle1
AC-TGT---CACTAT----------ATTGT---TGCCTTCT-A--TT-----A-ATT--------------------------------------------GTTCA---------------------CAGTCCACCCG--GGGG--------------CGC---------------CATGAAGACTAA-GAATATTTTTTCTAATTGA-AATAAC-GTTA---------AGG--AACTT-GG-------TGGTGTGAACTTTGC--T--TGGGCAAAT--------------------------------------CGA-CAACGAAAA-GAAAAGTGC-GTGCGATCGAAACGAAACSizeHit CountTotal NormTotal
No Reads
droRho1
AT-ATA---TTT-----CGACAAA-GAACTTAGA--GCCTA-G--CT-----T-AA-CGAAGGTTGGCGACGACGGGGCGACTTCGC-CAAGAGCGAGAG-------AAAACTTTA-T--------------------------TGTGCTCCCGCCTTCGCCCTAAA-CTAACTTACACTAAA----------------------------------CTTCAAGTTTTT------A------TTTTTAA------C-AAATTTCAAT------------------ATA-----------ATTCAAG---------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
AC-TGT---CACT--------------TTT---TGCCTTCA-A--TT---ATT---A--------------------------------------------TCATA---------------------TAACCCACCCG--GGAG--------------CGC---------------CATAAAAATGTA-GAATAATTTTTCTAAT-----A-TACCG------------AAAA--ACTTTGC-------TGGCTAG-ACATTTTTAT------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
AC-TGT---CACT--------------TGT---TGCCTTTA-A--TT---ATTAATA--------------------------------------------GTTTA---------------------AAGTCCACCCG--GGGG--------------CGC---------------CATGAAAATTTA-GAATAGTTTTTCCAAATAAGAA-AACCG------------AAAAATACTTTGG-------TGGCGAT-AAACTTTAATTTTAGGCAAAG--------------------------------------CGAAAAACGAGAATGAGAAATAC-GTGTGGTCGAT--CTAAASizeHit CountTotal NormTotal
No Reads
droSim2
CT-ATT---TAA-----CATATGT-GTTCTTAG---GCCTA-G--CT-----T-AA-CAGAGGTTGGCGAAGACGGGGCGAATTCGC-AAAGAGCGAGAG-------AGAACTTTA-T--------------------------TATGCTCCCGCCTTCGCCCTAAA-CTAACTTACACTAGA----------------------------------CTTCA----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
TCTATT---TTA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----T-AA-CAGAGGTTGGTGAAGGCGGGGCGAATTCGC-AAAGAGCGAGAG-------AAAGCTTTA-T--------------------------TATGCTCCCGCCTTCGCCCTAAA-CTAACTTACACTAGA----------------------------------CTTAAAATTTTT------TC-----TACTTAA---CAAT-AAACTAC---------------------AAA----------CAAT-AAA---------------------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................T-GTTCTTAG---GCCTA-G--CT-----T-AA-CAGAGGT......................................................................................................................................................................................................................................................................................................27208.001600000000000160
..........................TTCTTAG---GCCTA-G--CT-----T-AA-CAGAGGT......................................................................................................................................................................................................................................................................................................25206.251250000000000125
..........TA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----..................................................................................................................................................................................................................................................................................................................25200.30603300000000
..TATT---TTA-----CATATAT-GTTCTTAG---GCCT..............................................................................................................................................................................................................................................................................................................................26200.20400400000000
....TT---TTA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----..................................................................................................................................................................................................................................................................................................................28170.18301200000000
..........TA-----CATATAT-GTTCTTAG---GCCTA-G--CC-----..................................................................................................................................................................................................................................................................................................................25200.15300300000000
..........TA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----T-................................................................................................................................................................................................................................................................................................................26200.10200200000000
.....T---TTA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----..................................................................................................................................................................................................................................................................................................................27200.10201010000000
..TATT---TTA-----CATATAT-GTTCTTAG---GCCC..............................................................................................................................................................................................................................................................................................................................26200.10200200000000
....TT---TTA-----CATATAT-GTTCTTAG---GCCTA-G--C........................................................................................................................................................................................................................................................................................................................27190.05101000000000
..TATT---TTA-----CATATAT-GTTCTTAG---GCCTA-G--C........................................................................................................................................................................................................................................................................................................................29190.05101000000000
.........TTA-----CATATAT-GTTCTTAG---GCCTA-G--C........................................................................................................................................................................................................................................................................................................................25200.05100100000000
.....................................................................................................................................................TCCCGCCTTCGCCCTAAA-CTAACTTA......................................................................................................................................................................................26200.05101000000000
................................................................................................................................................TATGCTCCCGCCTTCGCCCTAAA-CTAAC.........................................................................................................................................................................................28200.05100100000000
.................................................................................................................TTA-T--------------------------TATGCTCCCGCCTT........................................................................................................................................................................................................18200.05101000000000
.........TTA-----CATATAT-GTTCTTAG---GCCTA-G--CT-----..................................................................................................................................................................................................................................................................................................................26200.05101000000000
...................TATAT-GTTCTTAG---GCCTA-G--TC-----C-................................................................................................................................................................................................................................................................................................................22200.05101000000000
..TATT---TTA-----CATATAT-GTTCTTAG---GCC...............................................................................................................................................................................................................................................................................................................................25200.05101000000000
......................................................................................................................................................CCCGCCTTCGCCCTAAA-CTAACTTACAC...................................................................................................................................................................................28200.05101000000000

Generated: 05/15/2015 at 03:13 PM