ID:

dpe_315

 Coordinate:

scaffold_330:50237-50293 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.7 -27.7 -27.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy+
mature
  1. scaffold_64:212359-212381 +
  2. scaffold_186:17523-17545 -
  3. scaffold_3535:1303-1325 -
  4. dpe_315  scaffold_330:50271-50293 -
star
  1. scaffold_2:122303-122321 +
  2. scaffold_64:212395-212413 +
  3. scaffold_54:212072-212090 +
  4. scaffold_28:52684-52702 -
  5. scaffold_186:17491-17509 -
  6. scaffold_3535:1271-1289 -
  7. dpe_315  scaffold_330:50238-50256 -
  8. scaffold_7995:269-287 +

Sense Strand Reads

TCGGCCTGCAGTTGCCGCCTCTCGGGGCCCTCGTCGTCCTTCGGCTGGTGGCGTAGGCTGCCACAACTCGCCTTCCTCCTCCTCGAGCCTGCTGCAGCCGCCGCTGCCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
***********************************.......(((.((((((...((((((..((.((((.............))))..))..))))))))))))))).............************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
 V057
head
..................................................GCGTAGGCTGCCACAACTCGCCT.................................................................................... 23 0 4 65.00 260 246 14 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTTCC................................................................................. 26 0 4 59.50 238 238 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTTC.................................................................................. 25 0 4 16.75 67 67 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTT................................................................................... 24 0 4 13.25 53 53 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCC..................................................................................... 22 0 4 11.00 44 44 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCT.................................................................................... 22 0 4 6.50 26 26 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTTCC................................................................................. 25 0 4 5.50 22 22 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTTCCT................................................................................ 27 0 4 4.50 18 16 2 0 0 0
..................................................GCGTAGGCTGCCACAACTCGC...................................................................................... 21 0 4 3.50 14 14 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTTCCTC............................................................................... 28 0 4 2.50 10 10 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTCGCCT.................................................................................... 25 0 3 2.33 7 6 1 0 0 0
...................................................CGTAGGCTGCCACAACTCGCC..................................................................................... 21 0 4 2.25 9 9 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTT................................................................................... 23 0 4 2.00 8 8 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTTC.................................................................................. 24 0 4 2.00 8 8 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTCGCC..................................................................................... 24 0 3 2.00 6 2 4 0 0 0
..................................................GCGTAGGCGGCCACAACTCGCCT.................................................................................... 23 1 4 1.75 7 7 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCG....................................................................................... 20 0 4 1.75 7 6 0 0 1 0
................................................TGGCGTAGGCTGCCACAACTCGC...................................................................................... 23 0 3 1.33 4 4 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTTCCTCC.............................................................................. 29 0 4 1.25 5 5 0 0 0 0
..................................................GCGTAGGCAGCCACAACTCGCCTTCC................................................................................. 26 1 4 1.25 5 5 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTCG....................................................................................... 22 0 3 1.00 3 3 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTC........................................................................................ 21 0 3 1.00 3 3 0 0 0 0
.........................................CGGCTTGTGGCGTAGGCTGCCACAAC.......................................................................................... 26 1 2 1.00 2 2 0 0 0 0
...................TCTCGGGGCCCTCGTCGTCCTTT................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
..................................................GCGTAGGCGGCCACAACTCGCCTTCC................................................................................. 26 1 4 1.00 4 4 0 0 0 0
.................CCTCTCGGGGCCCTCGTCGTCCTT.................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTTCCTC............................................................................... 27 0 4 1.00 4 4 0 0 0 0
.................................................GGCGTAGGCTGCCACAACTCGCCT.................................................................................... 24 0 3 1.00 3 3 0 0 0 0
..................................................GCGTAGGCAGCCACAACTCGCCT.................................................................................... 23 1 4 0.75 3 3 0 0 0 0
........................................TCGGCTGGTGGCGTAGGCTGCCA.............................................................................................. 23 0 4 0.75 3 3 0 0 0 0
........................................TCGGCTGGTGGCGTAGGCTGC................................................................................................ 21 0 4 0.75 3 3 0 0 0 0
..................................................GCGTAGGCTGCCACAACTC........................................................................................ 19 0 4 0.75 3 3 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCGT.................................................................................... 23 1 4 0.75 3 3 0 0 0 0
........................................TCGGCTGGTGGCGTAGGCTGCC............................................................................................... 22 0 4 0.75 3 3 0 0 0 0
..................................................GCGTAGGCGGCCACAACTCGCC..................................................................................... 22 1 4 0.75 3 3 0 0 0 0
..................................................GCGTAGGCGGCCACAACTCGCCTTC.................................................................................. 25 1 4 0.75 3 3 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTCGA...................................................................................... 23 1 3 0.67 2 2 0 0 0 0
............TGCCGCCTCTCGGGGCCCTCGTC.......................................................................................................................... 23 0 5 0.60 3 3 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGC...................................................................................... 20 0 4 0.50 2 2 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTGCC................................................................................. 26 1 4 0.50 2 2 0 0 0 0
........................................TCGGCTGGTGGCGTAGGCTGCCACAA........................................................................................... 26 0 4 0.50 2 2 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCTTG.................................................................................. 25 1 4 0.50 2 2 0 0 0 0
..................................................GCGTAGGCCGCCACAACTCGCCTTCC................................................................................. 26 1 4 0.50 2 2 0 0 0 0
........................................TCGGCTGGTGGCGTAGGCT.................................................................................................. 19 0 4 0.50 2 2 0 0 0 0
........................................TCGGCTGGTGGCGTAGGT................................................................................................... 18 1 4 0.50 2 2 0 0 0 0
........................................TCGGCTGGTGGCGTAGGCTG................................................................................................. 20 0 4 0.50 2 2 0 0 0 0
.....................................................TAGGCTGCCACAACTCGCC..................................................................................... 19 0 5 0.40 2 1 1 0 0 0
............TGCCGCCTCTCGGGGCCCTCGTCG......................................................................................................................... 24 0 5 0.40 2 2 0 0 0 0
......................................................AGGCTGCCACAACTCGCCT.................................................................................... 19 0 5 0.40 2 2 0 0 0 0
.................CCTCTCGGGGCCCTCGTCGTCC...................................................................................................................... 22 0 6 0.33 2 2 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTA........................................................................................ 21 1 3 0.33 1 1 0 0 0 0
...............................................GTGGCGTAGGCTGCCACAACTCGCCT.................................................................................... 26 0 3 0.33 1 1 0 0 0 0
...................TCTCGGGACCCTCGTCGTCC...................................................................................................................... 20 1 6 0.33 2 0 2 0 0 0
.............GCCGCCTCTCGGGGCCCTCGTC.......................................................................................................................... 22 0 6 0.33 2 2 0 0 0 0
................................................TGGCGTAGGCTGCCACAACTCGT...................................................................................... 23 1 6 0.33 2 2 0 0 0 0
...................TCTCGGGGCCCTCGTCGT........................................................................................................................ 18 0 6 0.33 2 2 0 0 0 0
.................................................GGCGTAGGCTGCCACAACTCGCCTTCC................................................................................. 27 0 3 0.33 1 1 0 0 0 0
.................................................GGCGTAGGCTGCCACAACTCGCAA.................................................................................... 24 2 3 0.33 1 1 0 0 0 0
........................................TCGGCTTGTGGCGTAGGCTGCA............................................................................................... 22 2 4 0.25 1 1 0 0 0 0
..................................................GAGTAGGCTGCCACAACTCGCCT.................................................................................... 23 1 4 0.25 1 1 0 0 0 0
........................................TCGGCTGGGGGCGTAGGCTGCCACAA........................................................................................... 26 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTACCACAACTCGCCTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCCGCCACAACTCGCC..................................................................................... 22 1 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTTGC................................................................................. 25 1 4 0.25 1 1 0 0 0 0
.................................................CGCGTAGGCTGCCACAACTC........................................................................................ 20 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCA.................................................................................... 23 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCG.................................................................................... 23 1 4 0.25 1 0 1 0 0 0
...................................................CGTAGGCTACCACAACTCGCCTTCC................................................................................. 25 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCGGCCACAACTCG....................................................................................... 20 1 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTCCCACAACTCGCCT.................................................................................... 22 1 4 0.25 1 1 0 0 0 0
.........................................CGGCTGGTGGCGTAGGCTG................................................................................................. 19 0 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTTCCT................................................................................ 26 0 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCCGCCACAACTCGCCT.................................................................................... 23 1 4 0.25 1 1 0 0 0 0
...........................................GCTTGTGGCGTAGGCTGCC............................................................................................... 19 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTTGCCTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
........................................TCGGCTTGTGGCGTAGGCTGCCA.............................................................................................. 23 1 4 0.25 1 1 0 0 0 0
........................................TCGGCTGGTGGCGTAGGA................................................................................................... 18 1 4 0.25 1 1 0 0 0 0
..................................................GCGTACGCTGCCACAACTCGCCT.................................................................................... 23 1 4 0.25 1 0 1 0 0 0
..................................................GCTTAGGCTGCCACAACTCGCCTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTTCCACAACTCGCCTTCC................................................................................. 25 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGTTGCCACAACTCGCC..................................................................................... 22 1 4 0.25 1 1 0 0 0 0
........................................TCGGCTTGTGGCGTAGGCTGC................................................................................................ 21 1 4 0.25 1 1 0 0 0 0
..................................................GCTTAGGCTGCCACAACTCGCCT.................................................................................... 23 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGCCTGCCACAACTCGCCTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTGCCACAACTCG....................................................................................... 19 0 4 0.25 1 1 0 0 0 0
..................................................GCGCAGGCTGCCACAACTCGCCT.................................................................................... 23 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCAT.................................................................................... 23 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCCTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
..................................................TCGTAGGCTGCCACAACTCGCCTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCGGCCACAACTCGC...................................................................................... 21 1 4 0.25 1 1 0 0 0 0
........................................TCGGCTTGTGGCGTAGGCTGCCACAA........................................................................................... 26 1 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCTTCCA................................................................................ 26 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCAGCCACAACTCGCCTTC.................................................................................. 25 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCGCCC.................................................................................... 23 1 4 0.25 1 0 1 0 0 0
..................................................TCGTAGGCTGCCACAACTCGCCTTC.................................................................................. 25 1 4 0.25 1 1 0 0 0 0
..................................................GCCTAGGCTGCCACAACTCGCCTTC.................................................................................. 25 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTTCCACAACTCG....................................................................................... 20 1 4 0.25 1 1 0 0 0 0
...................................................CGTAGGCTGCCACAACTCGCCA.................................................................................... 22 1 4 0.25 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACAACTCACCTTCC................................................................................. 26 1 4 0.25 1 1 0 0 0 0
....................................................GTAGGCTGCCACAACTCGC...................................................................................... 19 0 5 0.20 1 1 0 0 0 0
..................................................GCGTAGGCTGCCACATCTCGCCT.................................................................................... 23 1 5 0.20 1 1 0 0 0 0
............TGCCGCCTCTCGGGGCCCTCGT........................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0
.....................................................TAGGCTGCCACAACTCGCCTT................................................................................... 21 0 5 0.20 1 1 0 0 0 0
............TGCCGCCTCTCGGGGCCCTCGTCC......................................................................................................................... 24 1 5 0.20 1 1 0 0 0 0
.....................................................TAGGCTGCGACAACTCGCCTT................................................................................... 21 1 5 0.20 1 1 0 0 0 0
............TGCCGCCTATCGGGGCCCTCGTCG......................................................................................................................... 24 1 5 0.20 1 1 0 0 0 0
....................................................GTAGGCTGACACAACTCGCCT.................................................................................... 21 1 5 0.20 1 1 0 0 0 0
...........TTGCCGCCTCTCGGGGCCCTCG............................................................................................................................ 22 0 5 0.20 1 1 0 0 0 0
............TGCCGCCTCTCGGGGCCCTCGTCGTCC...................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0
...........TTGCCGCCTCTCGGGGCCCTCGTCG......................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0
...........................................................GCCACAACGCGCCTTCCTCCTCCT.......................................................................... 24 1 5 0.20 1 1 0 0 0 0
...........TTGCCGCCGCTCGGGGCCCTCG............................................................................................................................ 22 1 5 0.20 1 1 0 0 0 0
...............................................................CAACTCGCCTTCCTCCTCCTCG........................................................................ 22 0 5 0.20 1 1 0 0 0 0
....................................................GTAGGCTGCCACAACTCGCCTTCC................................................................................. 24 0 5 0.20 1 1 0 0 0 0
...........TTGCCGCCTCTCGGGGCCCTCGTC.......................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0
..................................................GCGTAGACTGCCACAACTCGCCT.................................................................................... 23 1 5 0.20 1 1 0 0 0 0
........................................TCGGCTTGTGGCGTAGGCTA................................................................................................. 20 2 5 0.20 1 1 0 0 0 0
............................................................CCACAACTCGCCTTCCTCCTACTC......................................................................... 24 1 5 0.20 1 1 0 0 0 0
....................................................GTAGGCTGCCACAACTCGCCT.................................................................................... 21 0 5 0.20 1 1 0 0 0 0
...........TTGCCGCCTCTCGGGGCCCTAG............................................................................................................................ 22 1 5 0.20 1 1 0 0 0 0
............TGCGGCCTCTCGGGGCCCTCGTCGTC....................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0
...........................................................GCCACAACGCGCCTTCCTCCTACTC......................................................................... 25 2 5 0.20 1 1 0 0 0 0
............TGCCGCCTCTCGGGGCCCTCGTCGT........................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0
..................CTCTCGGGGCCCTCGTCGTCTA..................................................................................................................... 22 2 6 0.17 1 1 0 0 0 0
.............GCCGCCTCTCGGGGCCCTCGTCGTCC...................................................................................................................... 26 0 6 0.17 1 1 0 0 0 0
....................CTCGGGGCCCTCGTCGTCCT..................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0
............TGCCGCCTCTCGGGGCCCTC............................................................................................................................. 20 0 6 0.17 1 1 0 0 0 0
...........................................................GCCACAACTCGCCTTCCTCCT............................................................................. 21 0 6 0.17 1 1 0 0 0 0
................GCCTCTCGGGGCCCTCGTCGTCC...................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0
.................CCTCTCGGGGCCCTCGTCGTCCT..................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0
...............................................................CAACTCGCCTTCCTCCTC............................................................................ 18 0 6 0.17 1 1 0 0 0 0
...................TCTCGGGGCCCTCGTCGTT....................................................................................................................... 19 1 6 0.17 1 1 0 0 0 0
..........................................................TGCCACAACTCGCCTTCCTCC.............................................................................. 21 0 7 0.14 1 1 0 0 0 0
..................................................GCGTAGGCTGCCAAAACTCGTCTTCC................................................................................. 26 2 7 0.14 1 1 0 0 0 0
.......................................................................................CCTGCTGCAGCCGCCGCTG................................................... 19 0 8 0.13 1 0 1 0 0 0
..........................................................TGCCACAAGTCGCCTTCCTCCT............................................................................. 22 1 8 0.13 1 1 0 0 0 0
.......................................................................................CCTGCTGCAGCCGCCGCTGT.................................................. 20 1 9 0.11 1 0 0 0 1 0
.......................................ATCGTCTGGTGGCGTAGGT................................................................................................... 19 3 18 0.06 1 0 0 0 0 1

Anti-sense strand reads

AGCCGGACGTCAACGGCGGAGAGCCCCGGGAGCAGCAGGAAGCCGACCACCGCATCCGACGGTGTTGAGCGGAAGGAGGAGGAGCTCGGACGACGTCGGCGGCGACGGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
************************************.......(((.((((((...((((((..((.((((.............))))..))..))))))))))))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
........................................AGCCGACCACCGCATCCGAC................................................................................................. 20 0 4 1.50 6 6 0 0
.........................................GCCGACCACCGCATCCGAC................................................................................................. 19 0 4 1.25 5 5 0 0
............................................................GGTGTTGAGCGGAAGGAG............................................................................... 18 0 7 0.71 5 5 0 0
.........................................GCCGACCACCGCATCCGACGGTGT............................................................................................ 24 0 4 0.50 2 2 0 0
.....................................................................................TCGGACGACGTCAGCGGCGACGGT................................................ 24 1 2 0.50 1 1 0 0
........................................AGCCGACCACCACATCCGAC................................................................................................. 20 1 4 0.25 1 1 0 0
...........................................CGACCACCGCATCCGACGGTGTT........................................................................................... 23 0 4 0.25 1 1 0 0
........................................TGCCGACCACCGCATCCGAC................................................................................................. 20 1 4 0.25 1 1 0 0
........................................AGCCGACCACCGCATCCG................................................................................................... 18 0 4 0.25 1 1 0 0
...........................................................CGGTGTTGAGCGGAAGGAGGAGGAG......................................................................... 25 0 5 0.20 1 0 1 0
............................................................GGTGTTGAGCGGAAGGAGGAG............................................................................ 21 0 6 0.17 1 1 0 0
.................GGAGAGCCCCGGGAGCAGCAGGA..................................................................................................................... 23 0 6 0.17 1 1 0 0
.........................................................GACGGTGTTGAGCGGAAGGAGGAT............................................................................ 24 1 6 0.17 1 1 0 0
............................................................TGTGTTGAGCGGAAGGAGGAT............................................................................ 21 2 6 0.17 1 1 0 0
............................................................GGTGTTGAGCGGAAGGAGGAT............................................................................ 21 1 6 0.17 1 1 0 0
..............GGCGGAGAGCCCCGGGAGCA........................................................................................................................... 20 0 6 0.17 1 1 0 0
............................................................GGTGTTGAGCGGAAGGAGGA............................................................................. 20 0 6 0.17 1 1 0 0
...............................................................GTTGAGCGGAAAGAGGATGA.......................................................................... 20 2 7 0.14 1 1 0 0
................................................................TTGAGCGGGAGGAGGAGGA.......................................................................... 19 1 7 0.14 1 0 1 0
.....................................................ATCCGTGGGTGTTGTGCGGA.................................................................................... 20 3 7 0.14 1 0 0 1
......................................................................................CGGACGACGTCCACGGCGAC................................................... 20 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_330:50187-50343 - dpe_315 TCGGCCTGCAGT-T-GCCGCCTCTCGGGGCCCT---------------------CGTCGTCCTT----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTCCTC---------CTC-------G------AGCC---TGCTGCA---GCCGCC--GCTGCCATTC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------
dp5 Unknown_singleton_3127:1481-1590 + TCGGCCTGCGGT-T-GCCGCCTCTCGGGGCCCT---------------------CGTCGTCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGCA---GCCGCC--GCTGCCATT-------------------------------------------------------------------------C
droWil2 scf2_1100000001927:869-976 - TGGGCCCGCCGC-C-GCTGCATCCGCCCCTGCT-------------------------GGG------CTAACCGCTG---------------T---------------------------------------CACACTCG------CCCCT----GCT-G---------GCCCAACT-------GC-------------C--------GTCATA---------CTC-------G------CCCC---TGCTGCA---CCCGCC--GCTGCTGT---------------------------------------------------------------------------
droVir3 scaffold_12875:9893515-9893613 - TAGCTCTGCAGC-TTGCCGCCCGTGGT-CCACTGGACCAGCTGCGGCTGCTGCTGC------------------------------------------------------------------------------------------TCG------GC-TG---------CGGCGG------TTT-----------------------CCTGCG-----------------CCCA------GC------------------GCT--GCTGCTGCTCG---------------------------------------------CC------------------------G
droMoj3 scaffold_6540:14739495-14739601 - TGTCACTGCTGC-T-GCTGTTTCTCTTGCTCCT-------------------------------------------------GTTC------CTCCTAC------------------------------------TGCCG------CTTAT----AC-TG---------CTACTACTGCTCATTGC-----------------------TCCC-----------------GCTG------CTCC---TGCTCTT---GCTGCT--GCTGCTCT--------------------------------------------------------------------------T
droGri2 scaffold_14906:7162808-7162906 - TGCGACTGCTGT-T-GCTGCTGCTGCTGTT----------------------------------------------------G---------TTGCTGCTG------------------------------------CTG------TTGTT----GTT-GTTGCTG---CTGTTGC--------GC-----------------------TGCA-----------------GTAA------AGGC---GGCTGCT---GCCGCC--GCTGCCAT--------------------------------------------------------------------------T
droAna3 scaffold_13117:3530049-3530161 + GACGGCGGCAGA-TAACTGTTGTTGAT-GCCCG---------------------CCGCTG-----------------CTGCTG---------CCGCTGATG------------------------------------CCG------CCGCC----GCT-G---------CCACGGCT--GCATTGT-----------------------TGCT-----------------GCTA------CTGC---TGCTGCT---GCTGCT--GCTGCTGT--------------------------------------------------------------------------T
droBip1 scf7180000396691:1702450-1702555 - TCGGACTGCGAA-T-GCAGCTGG----GTGCTT---------------------CTTCTT---------------------------------------------------------A---CCTTGAGA---TGCCGCCG------CTGGC----TC------------CGCCGC--------CAC----------CGCC--A----CCTCCTC---------C------T---------CCGA---CGCTGCC---ACCTCC--ACCGCTGC--------------------------------------------------------------------------C
droKik1 scf7180000302698:599519-599633 - CTTGAGGGCTGC-C-GCCGCTGCCTTGGCCTCT---------------------TGC--TTCTTGGACTTGGTGTAG---------------C---------------------------------------TGTAGCTT------CCT----------C---------CTGAAGCT-CCACTT-----------------------CCTCCT-----------------CCTG------CTGC---TGCTGCT---GCTGCC--GCCGCCGC--------------------------------------------------------------------------C
droFic1 scf7180000453882:762732-762836 + GTAGTCGGCGGA---GCTCTCGTTGC----TCT---------------------CGTTGTCCGT------------------------------------GT------------------------CCA---AGTTGT---------------------T---------CGACAGCT-CGTCCTGC-----------------------TCCTCCTCCT-----------CCTG------CTCC---TGCTCCT---GCTGCT--GCTGCTCCT-------------------------------------------------------------------------C
droEle1 scf7180000491080:1632983-1633107 - TGGTCTCGCCGT-A-GCTGCCGCCATTGGGC-------------------------------------------------GT-------------------------------------------GGGA---CATTGCTG------TTGCT----GCT-G---------CTGC----------TGC----------TGTT--G----CT-------GGTGTT--------G---------CTGC---AGTTGCT---GTTGCT--GCTGCTGT------------------------------------------------GAGTCCCCTCCCGCCGCCTCGCCCTTC
droRho1 scf7180000777217:235571-235679 - GTAGCCAGCATG-T---TGCTGC---------G---------------------GTGCTG-----------------CTGCCG---------TTGCTGATGC---------------------------------CGTCG------GCAGT--------G---------CAACAACT-G------CTGCTGCTGCCGC-----------CGCT-----------------GCAG------CGGT---TGCTGTT---GCAGCT--GCCGCTGC--------------------------------------------------------------------------C
droBia1 scf7180000302075:2232256-2232361 + TCGGCACTCAGC-A-GCTCCATGTCGTCGTCAT---------------------CGTCATCATC--------------------------------------------------------------ATC---------TTGCTCCGCCT----------G---------CGC-----------CGC----------CGTCCGCCTGTCATCATC---------CTC-----------------G---TCCCGCC---GCCGCC--GGTGTCCT--------------------------------------------------------------------------T
droTak1 scf7180000415909:449267-449397 - TGGGCCTGAATCGAAGCCGCCTGCGGATGGGC------------------------------------------------GG-------------------GCGTCAGCGGCTCCTTGCGGCTGGGGGG---CGTGGCCA------TCAGCTGGAGC-GG---------CAACAACTTCGCATTGC-----------------------TCTTC--------------------------AGCG---TACCGCA---ATTGCT--GCTGTTGT--------------------------------------------------------------------------T
droEug1 scf7180000408162:5805-5905 - TCGCT--GCC-----GCTGTCGTCGCTGCCGCT-------------------------GTC---------------------G---------TCGCTGC------------------------------------CGCTG------TTGAC----GCT-GCTGCTG---TTGTAGCT-------GC-----------------------CGTT-----------------GTCG------TGGC---TGTTGCT---GTCGTC--GCTGCCGC--------------------------------------------------------------------------T
dm3 chr2L:13309841-13309950 + GCAATCTGCTGA-T-GCTGCTGATGGGGGGCTG---------------------CGTAGTCGGT-------------------------------------------------------------GAGCCAACGTTGCCG------CAG------GC-AG---------GAGTAACT-C----TGC----------TG---------CA-------ACTCACGCTC--------------GAGT---CGCTG---------CA--GCAGCAATT-------------------------------------------------------------------------G
droSim2 2l:4701927-4702036 + TCCGCCTGCAGT-T-GCTGCTGGTGGTGCTGCT---------------------CCTCGG-----------------------------------------GCGTCAGTCT---CATA---TCACGG----------------------------GG-CG---------CCATCGCC-------------------GGCA-------GCTGATC---------GTCGGGCGTC---------------ACCGCC---G--CCT--CCTGCTGTT-------------------------------------------------------------------------C
droSec2 scaffold_5454:1216-1330 - CCGCGCCGATGC-T-GCTGCTTCCGGTGGCAAC---------------------TGC-------------------------GTCGCTGCTGT---------------------------------------TGCTGCTG------GTGGTG---AC-TG---------CG-T----------CGC----------TGCT------------------------------ACTGTTGCTGCTGGTGGTGACTGCGCCGCTGCT--GCTGCTAC--------------------------------------------------------------------------T
droYak3 2R:14067938-14068039 + TCCGC-TGCTGT-T-GCTGCTGCTGCTGCC----------------------------------------------------G---------------------------------------------------------------TTCGCG---GC-TGCCCCGCCTGCTCCAACT-C------C-----------------------TCCTCCTCCTCCTCCTC--------------CACC---TCCTCCG---GCGGCGGCTCCGCCAT--------------------------------------------------------------------------T
droEre2 scaffold_4929:9005900-9006007 + TGGGTCATCAGT-T-GCTGCTGCTGCTGCGC-------------------------------------------------GTGTTGCTG---C---------------------------------GGA---TGTTGCTG------GTGGT----GCT-G---------GCCA----------AGA----------TGTT--G----CT-------GCTGCT--------G---------CTGGAGATGCTGCT---GCGGCT--GCTGCTGC---------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TCGGCCTGCAGT-T-GCCGCCTCTCGGGGCCCT---------------------CGTCGTCCTT----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTCCTC---------CTC-------G------AGCC---TGCTGCA---GCCGCC--GCTGCCATTC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................23465.00260142460000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CC...........................................................................................................................................26459.5023802380000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------C............................................................................................................................................25416.75670670000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------.............................................................................................................................................24413.25530530000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCC......................................................................................................................................................................22411.00440440000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2246.50260260000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CC...........................................................................................................................................2545.50220220000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCT..........................................................................................................................................2744.50182160000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGC.......................................................................................................................................................................2143.50140140000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTC.........................................................................................................................................2842.50100100000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2532.337160000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCC......................................................................................................................................................................2142.259090000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------.............................................................................................................................................2342.008080000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------C............................................................................................................................................2442.008080000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGCC......................................................................................................................................................................2432.006420000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CG........................................................................................................................................................................2041.757061000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGC.......................................................................................................................................................................2331.334040000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTCC........................................................................................................................................2941.255050000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CG........................................................................................................................................................................2231.003030000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-C.........................................................................................................................................................................2131.003030000
.....................TCTCGGGGCCCT---------------------CGTCGTCCTT----------------------------T---------------------------------..............................................................................................................................................................................................................................2311.001000001
...................CCTCTCGGGGCCCT---------------------CGTCGTCCTT----------------------------................................................................................................................................................................................................................................................................2411.001010000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTC.........................................................................................................................................2741.004040000
..............................................................................................................................................GGCGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2431.003030000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------CCA................................................................................................................................................................................2340.753030000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------C..................................................................................................................................................................................2140.753030000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-C.........................................................................................................................................................................1940.753030000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------CC.................................................................................................................................................................................2240.753030000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGA.......................................................................................................................................................................2330.672020000
.............T-GCCGCCTCTCGGGGCCCT---------------------CGTC..................................................................................................................................................................................................................................................................................................2350.603030000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGC.......................................................................................................................................................................2040.502020000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------CCACAA.............................................................................................................................................................................2640.502020000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------G............................................................................................................................................2540.502020000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-T.............................................................................................................................................................................................1940.502020000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GT-..............................................................................................................................................................................................1840.502020000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------...................................................................................................................................................................................2040.502020000
..................................................................................................................................................TAG------GC-TG---------CCACAACT-CGCC......................................................................................................................................................................1950.402110000
.............T-GCCGCCTCTCGGGGCCCT---------------------CGTCG.................................................................................................................................................................................................................................................................................................2450.402020000
...................................................................................................................................................AG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................1950.402020000
...................CCTCTCGGGGCCCT---------------------CGTCGTCC..............................................................................................................................................................................................................................................................................................2260.332020000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-A.........................................................................................................................................................................2130.331010000
............................................................................................................................................GTGGCGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2630.331010000
...............GCCGCCTCTCGGGGCCCT---------------------CGTC..................................................................................................................................................................................................................................................................................................2260.332020000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGT.......................................................................................................................................................................2360.332020000
.....................TCTCGGGGCCCT---------------------CGTCGT................................................................................................................................................................................................................................................................................................1860.332020000
..............................................................................................................................................GGCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CC...........................................................................................................................................2730.331010000
..............................................................................................................................................GGCGTAG------GC-TG---------CCACAACT-CGCAA.....................................................................................................................................................................2430.331010000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCA.....................................................................................................................................................................2340.251010000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCG.....................................................................................................................................................................2340.251100000
............................................................................................C---------------------------------GGC---------TGGTGGCGTAG------GC-TG---------...................................................................................................................................................................................1940.251010000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCT..........................................................................................................................................2640.251010000
...............................................................T----------------------------C---------------------------------GGC---------TGGTGGCGTAG------GA-..............................................................................................................................................................................................1840.251010000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CG........................................................................................................................................................................1940.251010000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCA..........................................................................................................................................2640.251010000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCC.....................................................................................................................................................................2340.251100000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCA.....................................................................................................................................................................2240.251010000
.................................................................................................................................................GTAG------GC-TG---------CCACAACT-CGC.......................................................................................................................................................................1950.201010000
.............T-GCCGCCTCTCGGGGCCCT---------------------CGT...................................................................................................................................................................................................................................................................................................2250.201010000
..................................................................................................................................................TAG------GC-TG---------CCACAACT-CGCCTT-----------------------.............................................................................................................................................2150.201010000
.............T-GCCGCCTCTCGGGGCCCT---------------------CGTCC.................................................................................................................................................................................................................................................................................................2450.201010000
...........T-T-GCCGCCTCTCGGGGCCCT---------------------CG....................................................................................................................................................................................................................................................................................................2250.201010000
.............T-GCCGCCTCTCGGGGCCCT---------------------CGTCGTCC..............................................................................................................................................................................................................................................................................................2750.201010000
...........T-T-GCCGCCTCTCGGGGCCCT---------------------CGTCG.................................................................................................................................................................................................................................................................................................2550.201010000
............................................................................................................................................................................CAACT-CGCCTT-----------------------CCTCCTC---------CTC-------G------............................................................................................................2250.201010000
.................................................................................................................................................GTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CC...........................................................................................................................................2450.201010000
...........T-T-GCCGCCTCTCGGGGCCCT---------------------CGTC..................................................................................................................................................................................................................................................................................................2450.201010000
.................................................................................................................................................GTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2150.201010000
.............T-GCCGCCTCTCGGGGCCCT---------------------CGTCGT................................................................................................................................................................................................................................................................................................2550.201010000
....................CTCTCGGGGCCCT---------------------CGTCGTCTA.............................................................................................................................................................................................................................................................................................2260.171010000
...............GCCGCCTCTCGGGGCCCT---------------------CGTCGTCC..............................................................................................................................................................................................................................................................................................2660.171010000
......................CTCGGGGCCCT---------------------CGTCGTCCT.............................................................................................................................................................................................................................................................................................2060.171010000
.............T-GCCGCCTCTCGGGGCCCT---------------------C.....................................................................................................................................................................................................................................................................................................2060.171010000
...............................................................................................................................................................G---------CCACAACT-CGCCTT-----------------------CCTCCT.......................................................................................................................................2160.171010000
..................GCCTCTCGGGGCCCT---------------------CGTCGTCC..............................................................................................................................................................................................................................................................................................2360.171010000
...................CCTCTCGGGGCCCT---------------------CGTCGTCCT.............................................................................................................................................................................................................................................................................................2360.171010000
............................................................................................................................................................................CAACT-CGCCTT-----------------------CCTCCTC---------.............................................................................................................................1860.171010000
.....................TCTCGGGGCCCT---------------------CGTCGTT...............................................................................................................................................................................................................................................................................................1960.171010000
..............................................................................................................................................................TG---------CCACAACT-CGCCTT-----------------------CCTCC........................................................................................................................................2170.141010000
..................................................................................................................................................................................................................................................CC---TGCTGCA---GCCGCC--GCTG...............................................................................1980.131100000
..................................................................................................................................................................................................................................................CC---TGCTGCA---GCCGCC--GCTGT..............................................................................2090.111001000
dp5
TCGGCCTGCGGT-T-GCCGCCTCTCGGGGCCCT---------------------CGTCGTCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGCA---GCCGCC--GCTGCCATT-------------------------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CC...........................................................................................................................................2654.602302300000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2354.002002000000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------C............................................................................................................................................2551.6080800000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------.............................................................................................................................................2451.6080800000000
.......................................................................................................................................................................................T-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGCA---G..........................................................................................2391.22110300000800
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCT..........................................................................................................................................2750.6030300000000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CC...........................................................................................................................................2550.6030300000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGC.......................................................................................................................................................................2150.6030300000000
.......................................................................................................................................................................................T-----------------------CCTCCTC---------CTC--------------GGCC---TGCTG................................................................................................2090.5650100000400
.................................................................................................................................................................................................................TCCTC---------CTC--------------GGCC---TGCTGCA---G..........................................................................................2090.5650500000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCC......................................................................................................................................................................2250.4020200000000
.................................................................................................................................................................................................................TCCTC---------CTC--------------GGCC---TGCTGCA---GCCGCC--GC.................................................................................2760.3320200000000
.............................................................................................................................................................................AACT-CGCCTT-----------------------CCTCCTC---------CTC--------------GGCC---.....................................................................................................2430.3310100000000
............................................................................................................................................................................CAACT-CGCCTT-----------------------CCTCCTC---------CTC--------------GGCC---.....................................................................................................2530.3310010000000
....................................................................................................................................................................................................................TC---------CTC--------------GGCC---TGCTGCA---GCCGCC--GC.................................................................................2470.2920200000000
...........T-T-GCCGCCTCTCGGGGCCCT---------------------CGTCA.................................................................................................................................................................................................................................................................................................2540.2510100000000
TCGGCCTGCGGT-T-GCCGCCTCTCG..................................................................................................................................................................................................................................................................................................................................2440.2510100000000
.CGGCCTGCGGT-T-GCCGCCTCTCGG.................................................................................................................................................................................................................................................................................................................................2440.2510100000000
.......................................................................................................................................................................................T-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGC...............................................................................................2190.2220000000200
..............................................................TC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CCACA..............................................................................................................................................................................25140.2130300000000
......TGCGGT-T-GCCGCCTCTCGGGGCC.............................................................................................................................................................................................................................................................................................................................2350.2010000100000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGC.......................................................................................................................................................................2350.2010100000000
............................................................................................................................................................C-TG---------CCACAACT-CGCCTT-----------------------CCTCC........................................................................................................................................2250.2010010000000
.............................................................................................................................................TGGCGTAG------GC-TG---------CCACAACT-CGA.......................................................................................................................................................................2350.2010100000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-C.........................................................................................................................................................................1950.2010100000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCC.....................................................................................................................................................................2350.2010100000000
............................................................................................................................................GTGGCGTAG------GC-TG---------CCACAACT-CGCCT.....................................................................................................................................................................2650.2010100000000
...........................................................TCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------C..................................................................................................................................................................................24150.2030300000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CCTCG........................................................................................................................................2950.2010100000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CG........................................................................................................................................................................2050.2010100000000
................................................................................................................................................CGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------.............................................................................................................................................2350.2010100000000
..............................................................................................................................................GGCGTAG------GC-TG---------CCACAACT-CG........................................................................................................................................................................2150.2010100000000
................................................................................................................................................................................T-CGCCTT-----------------------CCTCCTC---------CTC--------------GGC.........................................................................................................20110.1820200000000
................................................................................................................................................................................T-CGCCTT-----------------------CCTCCTC---------CTC--------------GGCC---.....................................................................................................21110.1820200000000
.......................................................................................................................................................................................T-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGCA---GCCGC......................................................................................2760.1710100000000
...............................................................................................................................................GCGTAG------GC-TG---------CCACAACT-CGCCTT-----------------------CT...........................................................................................................................................2660.1710100000000
.................................................................................................................................................................................................................TCCTC---------CTC--------------GGCC---TGCTGCA---GCCGCC--G..................................................................................2660.1710100000000
...............GCCGCCTCTCGGGGCCCT---------------------CGTCGT................................................................................................................................................................................................................................................................................................2470.1410100000000
...........................................................TCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CCA................................................................................................................................................................................26150.1320200000000
..............................................................TC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------TA.................................................................................................................................................................................22150.1320200000000
...............................................................C--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------...................................................................................................................................................................................19150.1320200000000
.................CGCCTCTCGGGGCCCT---------------------CGTCGTCC..............................................................................................................................................................................................................................................................................................2480.1310100000000
......................CTCGGGGCCCT---------------------CGTCGTCCT.............................................................................................................................................................................................................................................................................................2090.1110100000000
......................................................................................................................................................................................TT-----------------------CCTCCTC---------CTC--------------GGCC---TGCTG................................................................................................2190.1110100000000
.....................TCTCGGGGCCCT---------------------CGTCGTCC..............................................................................................................................................................................................................................................................................................2090.1110100000000
.................................................................................................................................................................................................................TCCTC---------CTC--------------GGCC---TGCTGCA---...........................................................................................1990.1110100000000
.................................................................................................................................................................................................................TCCTC---------CTC--------------GGCC---TGCTGCA---A..........................................................................................2090.1110100000000
.......................................................................................................................................................................................T-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGCT---...........................................................................................2290.1110100000000
.......................................................................................................................................................................................T-----------------------CCTCCTC---------CTC--------------GGCC---TGCTGCA---...........................................................................................2290.1110100000000
..................................................................................................................................................................................................................CCTC---------CTC--------------GGCC---TGCTGCA---GA.........................................................................................2090.1110100000000
......................................................................................................................................................................................TT-----------------------CCTCCTC---------CTC--------------GGCC---TGC..................................................................................................1990.1110100000000
.....................TCTCGGGGCCCT---------------------CGTCGTCCTC--------------------------------------------------------------GGC---------A.................................................................................................................................................................................................................2690.1110100000000
..................GCCTCTCGGGGCCCT---------------------CGTCGTCCTC--------------------------------------------------------------GG............................................................................................................................................................................................................................2790.1110100000000
..................................................................................................................................................................................CGCCTT-----------------------CCTCCTC---------CTC--------------GGCC---T....................................................................................................21110.0910100000000
...........................GGCCCT---------------------CGTCGTCCTC--------------------------------------------------------------GGC---------..................................................................................................................................................................................................................19140.0710100000000
..............................................................TC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CCA................................................................................................................................................................................23150.0710100000000
............................................................CCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CA.................................................................................................................................................................................24150.0710100000000
...........................................................TCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-TG---------CC.................................................................................................................................................................................25150.0710100000000
...........................................................TCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GA-AA---------...................................................................................................................................................................................23150.0710100000000
............................................................CCTC--------------------------------------------------------------GGC---------CGGTGGCGTAA------A................................................................................................................................................................................................19160.0610100000000
...........................................................TCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAG------GC-..............................................................................................................................................................................................21160.0610100000000
...........................................................TCCTC--------------------------------------------------------------GGC---------CGGTGGCGTAC------AA-..............................................................................................................................................................................................21170.0610100000000
droWil2
TGGGCCCGCCGC-C-GCTGCATCCGCCCCTGCT-------------------------GGG------CTAACCGCTG---------------T---------------------------------------CACACTCG------CCCCT----GCT-G---------GCCCAACT-------GC-------------C--------GTCATA---------CTC-------G------CCCC---TGCTGCA---CCCGCC--GCTGCTGT---------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................TAACCGCTG---------------T---------------------------------------CACACTCG------CCC.......................................................................................................................................................................................................21200.15330000
....................................................................................................................................................................................................................TA---------CTC-------G------CCCC---TGCTGCA---CCCGCC--G..................................................................................24190.05101000
....................................................................................................................................................................................................................TA---------CTC-------G------CCCC---TGCTGCA---CCCG.......................................................................................21190.05101000
....CCCGCCGC-C-GCTGCATCCGCC.................................................................................................................................................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................................................C-------G------CCCC---TGCTGCA---CCCGCC--GC.................................................................................21200.05101000
...................................................................CTAACCGCTG---------------T---------------------------------------CACACTCG------CC........................................................................................................................................................................................................21200.05100100
.............................................................................................................................................................................AACT-------GC-------------C--------GTCATA---------CTC-------G------CCCC---.....................................................................................................21200.05100010
.............................................................................................................................................................T-G---------GCCCAACT-------GC-------------C--------GTCATA---------CTC-------G------............................................................................................................23200.05101000
droVir3
TAGCTCTGCAGC-TTGCCGCCCGTGGT-CCACTGGACCAGCTGCGGCTGCTGCTGC------------------------------------------------------------------------------------------TCG------GC-TG---------CGGCGG------TTT-----------------------CCTGCG-----------------CCCA------GC------------------GCT--GCTGCTGCTCG---------------------------------------------CC------------------------GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TGTCACTGCTGC-T-GCTGTTTCTCTTGCTCCT-------------------------------------------------GTTC------CTCCTAC------------------------------------TGCCG------CTTAT----AC-TG---------CTACTACTGCTCATTGC-----------------------TCCC-----------------GCTG------CTCC---TGCTCTT---GCTGCT--GCTGCTCT--------------------------------------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGCGACTGCTGT-T-GCTGCTGCTGCTGTT----------------------------------------------------G---------TTGCTGCTG------------------------------------CTG------TTGTT----GTT-GTTGCTG---CTGTTGC--------GC-----------------------TGCA-----------------GTAA------AGGC---GGCTGCT---GCCGCC--GCTGCCAT--------------------------------------------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GACGGCGGCAGA-TAACTGTTGTTGAT-GCCCG---------------------CCGCTG-----------------CTGCTG---------CCGCTGATG------------------------------------CCG------CCGCC----GCT-G---------CCACGGCT--GCATTGT-----------------------TGCT-----------------GCTA------CTGC---TGCTGCT---GCTGCT--GCTGCTGT--------------------------------------------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................CTA------CTGC---TGCTGCT---GCTGC......................................................................................19200.051100000
droBip1
TCGGACTGCGAA-T-GCAGCTGG----GTGCTT---------------------CTTCTT---------------------------------------------------------A---CCTTGAGA---TGCCGCCG------CTGGC----TC------------CGCCGC--------CAC----------CGCC--A----CCTCCTC---------C------T---------CCGA---CGCTGCC---ACCTCC--ACCGCTGC--------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
CTTGAGGGCTGC-C-GCCGCTGCCTTGGCCTCT---------------------TGC--TTCTTGGACTTGGTGTAG---------------C---------------------------------------TGTAGCTT------CCT----------C---------CTGAAGCT-CCACTT-----------------------CCTCCT-----------------CCTG------CTGC---TGCTGCT---GCTGCC--GCCGCCGC--------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droFic1
GTAGTCGGCGGA---GCTCTCGTTGC----TCT---------------------CGTTGTCCGT------------------------------------GT------------------------CCA---AGTTGT---------------------T---------CGACAGCT-CGTCCTGC-----------------------TCCTCCTCCT-----------CCTG------CTCC---TGCTCCT---GCTGCT--GCTGCTCCT-------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
TGGTCTCGCCGT-A-GCTGCCGCCATTGGGC-------------------------------------------------GT-------------------------------------------GGGA---CATTGCTG------TTGCT----GCT-G---------CTGC----------TGC----------TGTT--G----CT-------GGTGTT--------G---------CTGC---AGTTGCT---GTTGCT--GCTGCTGT------------------------------------------------GAGTCCCCTCCCGCCGCCTCGCCCTTCSizeHit CountTotal NormTotal
No Reads
droRho1
GTAGCCAGCATG-T---TGCTGC---------G---------------------GTGCTG-----------------CTGCCG---------TTGCTGATGC---------------------------------CGTCG------GCAGT--------G---------CAACAACT-G------CTGCTGCTGCCGC-----------CGCT-----------------GCAG------CGGT---TGCTGTT---GCAGCT--GCCGCTGC--------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
TCGGCACTCAGC-A-GCTCCATGTCGTCGTCAT---------------------CGTCATCATC--------------------------------------------------------------ATC---------TTGCTCCGCCT----------G---------CGC-----------CGC----------CGTCCGCCTGTCATCATC---------CTC-----------------G---TCCCGCC---GCCGCC--GGTGTCCT--------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
TGGGCCTGAATCGAAGCCGCCTGCGGATGGGC------------------------------------------------GG-------------------GCGTCAGCGGCTCCTTGCGGCTGGGGGG---CGTGGCCA------TCAGCTGGAGC-GG---------CAACAACTTCGCATTGC-----------------------TCTTC--------------------------AGCG---TACCGCA---ATTGCT--GCTGTTGT--------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEug1
TCGCT--GCC-----GCTGTCGTCGCTGCCGCT-------------------------GTC---------------------G---------TCGCTGC------------------------------------CGCTG------TTGAC----GCT-GCTGCTG---TTGTAGCT-------GC-----------------------CGTT-----------------GTCG------TGGC---TGTTGCT---GTCGTC--GCTGCCGC--------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
GCAATCTGCTGA-T-GCTGCTGATGGGGGGCTG---------------------CGTAGTCGGT-------------------------------------------------------------GAGCCAACGTTGCCG------CAG------GC-AG---------GAGTAACT-C----TGC----------TG---------CA-------ACTCACGCTC--------------GAGT---CGCTG---------CA--GCAGCAATT-------------------------------------------------------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...ATCTGCTGA-T-GCTGCTGATGCT.................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCGCCTGCAGT-T-GCTGCTGGTGGTGCTGCT---------------------CCTCGG-----------------------------------------GCGTCAGTCT---CATA---TCACGG----------------------------GG-CG---------CCATCGCC-------------------GGCA-------GCTGATC---------GTCGGGCGTC---------------ACCGCC---G--CCT--CCTGCTGTT-------------------------------------------------------------------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................CT---------------------CCTCGG-----------------------------------------GCGTCAGTCT---C.........................................................................................................................................................................................................................................1912.00220000000000000000
..............................................................................................................................................................................GCC-------------------GGCA-------GCTGATC---------GTCGGGC......................................................................................................................2111.00101000000000000000
droSec2
CCGCGCCGATGC-T-GCTGCTTCCGGTGGCAAC---------------------TGC-------------------------GTCGCTGCTGT---------------------------------------TGCTGCTG------GTGGTG---AC-TG---------CG-T----------CGC----------TGCT------------------------------ACTGTTGCTGCTGGTGGTGACTGCGCCGCTGCT--GCTGCTAC--------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................GCTTCCGGTGGCAAC---------------------TGC-------------------------GTC.......................................................................................................................................................................................................................................................................2140.2510010
droYak3
TCCGC-TGCTGT-T-GCTGCTGCTGCTGCC----------------------------------------------------G---------------------------------------------------------------TTCGCG---GC-TGCCCCGCCTGCTCCAACT-C------C-----------------------TCCTCCTCCTCCTCCTC--------------CACC---TCCTCCG---GCGGCGGCTCCGCCAT--------------------------------------------------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGGGTCATCAGT-T-GCTGCTGCTGCTGCGC-------------------------------------------------GTGTTGCTG---C---------------------------------GGA---TGTTGCTG------GTGGT----GCT-G---------GCCA----------AGA----------TGTT--G----CT-------GCTGCT--------G---------CTGGAGATGCTGCT---GCGGCT--GCTGCTGC---------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:13 PM