ID:

dpe_311

 Coordinate:

scaffold_58:1444-1523 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.3 -30.5 -30.3 -30.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dpe_311  scaffold_58:1499-1522 +
  2. scaffold_53:150874-150897 -
  3. scaffold_120:117553-117576 -
star

Sense Strand Reads

ATCCTGGCATCCAGAAAGCTCGCAGATTTCGCCTCGTGCAGCTATCCTCTAGGATGGATGGACAATTGCTGCTCGGATCTTTATCTATAAACTCTTAGTGGTTAGCATCGATTGCCCTGACCTGCTTAGTAGGATGGGCTTGAGTACGTCTGCAAGGAGCTCAAGTACCCATACACCCAC
***********************************((....((((((((((((..((..((.((((((.((((..((((....................)))))))).)))))).))...))..))))).)))))))......))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V111
male body		 M021
embryo
 V042
embryo
.........................................................................................................CATCGATTGCCCTGACCTGCTTAG................................................... 24 0 3 8.00 24 24 0 0 0 0
..................................................................................................TGGTTAGGATCGATTGAC................................................................ 18 2 1 1.00 1 0 0 1 0 0
.....................................................................................................................TGACATGCATAGTAGGATGGGA......................................... 22 3 1 1.00 1 0 1 0 0 0
.....................................................................................................................TGGCGTGCTAAGTAGGATGG........................................... 20 3 1 1.00 1 0 1 0 0 0
.........................................................................................................CATCGATTGCCCTGACCTGCTTAGT.................................................. 25 0 3 0.67 2 2 0 0 0 0
..........................................................................................................ATCGATTGCCCTGACCTGCTTAG................................................... 23 0 3 0.67 2 2 0 0 0 0
.........................................................................................................CATCGATTGCCCTGACCTGCTTAGTA................................................. 26 0 3 0.67 2 2 0 0 0 0
.........................................................................................................CATCGATTGCCCTGACCTGCTTA.................................................... 23 0 3 0.33 1 1 0 0 0 0
.........................................................................................................CATCGATTGCCCTGACCTG........................................................ 19 0 3 0.33 1 1 0 0 0 0
.........................................................................................................CATCGATTGCCCTGACCTGCTTAGTAG................................................ 27 0 3 0.33 1 0 0 0 1 0
..........................................................................................................ATCGATTGCCCTGACCTGCTTAGTAG................................................ 26 0 3 0.33 1 1 0 0 0 0
.........................................................................................................CATCGATTTCCCTGACCTGCTTAG................................................... 24 1 4 0.25 1 1 0 0 0 0
................................................................................................................TGCCCTGACCTGCTTAGTAGGAT............................................. 23 0 8 0.13 1 1 0 0 0 0
...................................................................................................GGTTAAGATCGATTGACCTGA............................................................ 21 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TAGGACCGTAGGTCTTTCGAGCGTCTAAAGCGGAGCACGTCGATAGGAGATCCTACCTACCTGTTAACGACGAGCCTAGAAATAGATATTTGAGAATCACCAATCGTAGCTAACGGGACTGGACGAATCATCCTACCCGAACTCATGCAGACGTTCCTCGAGTTCATGGGTATGTGGGTG
***********************************((....((((((((((((..((..((.((((((.((((..((((....................)))))))).)))))).))...))..))))).)))))))......))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
.........................................................................................................GTAGCTAACGGGACTGGACGAAT.................................................... 23 0 3 0.33 1 1 0
................................................................................................................ACGGGACTGGACGAATCATC................................................ 20 0 9 0.11 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_58:1394-1573 + dpe_311 ATCCTGGCATCCAGAAAGCTCGCAGATTTCGCCTCGTGCAGCTATCCTCTAGGATG-------GATGGACAATT---GCTGCTCGGATCTTTATCTATAA---ACTCTTAGTGGTTAGCATCGATTGCCCTGACCTGCTTAGTAGGATGGGCTTGAGTACGTCTGCAAGGAGCTCAAGTACCCATACA------CCCAC
dp5 XR_group5:404736-404911 - ATCCTGGCATCCAGAAAGCTCGCAGATTTCGCCTCGTGCAGCTATCCTCTAGGATG-------GATGGACAATT---GCTGCTCGGATCTTTATCTATAA---ACTCTTAGTGGTTAGC----ATTGCCCTGACCTGCTTAGTAGGATGGGCTTGAGTACGTCTGCAAGGAGCTCAAGTACCCATACA------CCCAC
droEle1 scf7180000490419:22551-22721 + ATTCTAGCATCTG---------------TCGTCTTGTTCATCCTT---CTAGCCTTGAATACTATAGGAAAATACAAGCTTTACT------TATCTTTGAAGACCTTCTTGCTGGCTGCCTAGATTGCCCTGTGTTGCTTTCCAAGA----CTTTTGTGTGCCATGCAGGTCTTTACGTTCTCACGAACCATTTTTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ATCCTGGCATCCAGAAAGCTCGCAGATTTCGCCTCGTGCAGCTATCCTCTAGGATG-------GATGGACAATT---GCTGCTCGGATCTTTATCTATAA---ACTCTTAGTGGTTAGCATCGATTGCCCTGACCTGCTTAGTAGGATGGGCTTGAGTACGTCTGCAAGGAGCTCAAGTACCCATACA------CCCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................CATCGATTGCCCTGACCTGCTTAG.........................................................2438.00240240000
......................................................................................................................CATCGATTGCCCTGACCTGCTTAGT........................................................2530.672020000
.......................................................................................................................ATCGATTGCCCTGACCTGCTTAG.........................................................2330.672020000
......................................................................................................................CATCGATTGCCCTGACCTGCTTAGTA.......................................................2630.672020000
......................................................................................................................CATCGATTGCCCTGACCTGCTTA..........................................................2330.331010000
......................................................................................................................CATCGATTGCCCTGACCTG..............................................................1930.331010000
......................................................................................................................CATCGATTGCCCTGACCTGCTTAGTAG......................................................2730.331100000
.......................................................................................................................ATCGATTGCCCTGACCTGCTTAGTAG......................................................2630.331010000
.............................................................................................................................TGCCCTGACCTGCTTAGTAGGAT...................................................2380.131010000
dp5
ATCCTGGCATCCAGAAAGCTCGCAGATTTCGCCTCGTGCAGCTATCCTCTAGGATG-------GATGGACAATT---GCTGCTCGGATCTTTATCTATAA---ACTCTTAGTGGTTAGC----ATTGCCCTGACCTGCTTAGTAGGATGGGCTTGAGTACGTCTGCAAGGAGCTCAAGTACCCATACA------CCCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................TGCCCTGACCTGCTTAGTAGGA....................................................2230.3310100000000
droEle1
ATTCTAGCATCTG---------------TCGTCTTGTTCATCCTT---CTAGCCTTGAATACTATAGGAAAATACAAGCTTTACT------TATCTTTGAAGACCTTCTTGCTGGCTGCCTAGATTGCCCTGTGTTGCTTTCCAAGA----CTTTTGTGTGCCATGCAGGTCTTTACGTTCTCACGAACCATTTTTTATSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 03:11 PM