ID:

dpe_307

Coordinate:

scaffold_9406:1135-1183 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in alignment

mismatch in read

Predicted structure

-22.1	-21.6

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

TCGTTGCACTTTAGGATTTTAATCCCATTTAGCCACCTAGCACCATCGAAAGAGGGCATTGGGGCTGCGGGACTTCCTCCATGTGCGCAAACAGTGCGTGACGTTCCTGCACCAGCTTCCACT *******...((((......((((...(((((.((..((.((.((....))))))...))))))).))))..))))..........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V057 head
........................CCATTTAGCCACCTAGCACCATCG...........................................................................	24	0	3	3.67	11	11	0	0
........................CCATTTAGCCACCTAGCACCATCGA..........................................................................	25	0	3	1.67	5	4	1	0
........................................................................................AAACAGTGAGTGACGTTCCTGCACC..........	25	1	2	0.50	1	1	0	0
........................CCATTTAGCCACCTAGCACCATC............................................................................	23	0	4	0.50	2	2	0	0
........................CCATTTAGCCACCTAGCACCATCGAA.........................................................................	26	0	3	0.33	1	1	0	0
.........................CATTTAGCCACCTAGCACCATCGA..........................................................................	24	0	3	0.33	1	1	0	0
...................CAAATCCATTTAGCCACCTAGCACCATCG...........................................................................	29	3	3	0.33	1	1	0	0
........................CCATTTAGCCACCTAGCACCAACG...........................................................................	24	1	3	0.33	1	1	0	0
.........................CATTTAGCAACCTAGCACCATCGA..........................................................................	24	1	3	0.33	1	1	0	0
........................CCATTTAGGCACCTAGCACCATC............................................................................	23	1	4	0.25	1	1	0	0
.........................CATTTAGCCACCTAGCACCAT.............................................................................	21	0	4	0.25	1	1	0	0
..........................................................TTGGGGCTGGGGGACCTC...............................................	18	2	10	0.10	1	0	0	1

Anti-sense strand reads

AGCAACGTGAAATCCTAAAATTAGGGTAAATCGGTGGATCGTGGTAGCTTTCTCCCGTAACCCCGACGCCCTGAAGGAGGTACACGCGTTTGTCACGCACTGCAAGGACGTGGTCGAAGGTGA *********************************...((((......((((...(((((.((..((.((.((....))))))...))))))).))))..))))..........*******	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body
................................................................GACGCCCTGAAGGAGGGACACGCGT..................................	25	1	2	0.50	1	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droPer2	scaffold_9406:1085-1207 -	dpe_307	TCGTTGCACTT----------------------TAGGATTTTAATCCCATTTAGCCACCTAGCACCATCGAAAGAGGGCATTGGGGCTGCGGGACTTCCTCCATGTGCGCAAACAGTGCGTGACGTTCCTGCACCAGCTTCCACT---------------------------
dp5	Unknown_group_85:26512-26634 -		TTGCCTGAACCGTGACAGTAGACTACTACAGGTTAAA--GGCAGTCCCATCCGGAGGCTTGGA-----------------------------------------------TAAATGTGGACAAGGTCCCTGGTTTAATTTCCTACAGATCCGAAATGTCCGTGAGGAAAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

TCGTTGCACTT----------------------TAGGATTTTAATCCCATTTAGCCACCTAGCACCATCGAAAGAGGGCATTGGGGCTGCGGGACTTCCTCCATGTGCGCAAACAGTGCGTGACGTTCCTGCACCAGCTTCCACT---------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................CCATTTAGCCACCTAGCACCATCG......................................................................................................	24	3	3.67	11	0	11	0	0	0	0
..............................................CCATTTAGCCACCTAGCACCATCGA.....................................................................................................	25	3	1.67	5	1	4	0	0	0	0
..............................................CCATTTAGCCACCTAGCACCATC.......................................................................................................	23	4	0.50	2	0	2	0	0	0	0
..............................................CCATTTAGCCACCTAGCACCATCGAA....................................................................................................	26	3	0.33	1	0	1	0	0	0	0
...............................................CATTTAGCCACCTAGCACCATCGA.....................................................................................................	24	3	0.33	1	0	1	0	0	0	0
...............................................CATTTAGCCACCTAGCACCAT........................................................................................................	21	4	0.25	1	0	1	0	0	0	0

dp5

TTGCCTGAACCGTGACAGTAGACTACTACAGGTTAAA--GGCAGTCCCATCCGGAGGCTTGGA-----------------------------------------------TAAATGTGGACAAGGTCCCTGGTTTAATTTCCTACAGATCCGAAATGTCCGTGAGGAAAGCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....TGAACCGTGACAGTAGACTACTAC...............................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	3	0	0
............................................TCCCATCCGGAGGCTTGGA-----------------------------------------------TAAATG........................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................GGTTTAATTTCCTACAGATCCGAAA.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................AAA--GGCAGTCCCATCCGGAGGCTTG...............................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TGAACCGTGACAGTAGACTACTACA..............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TGGTTTAATTTCCTACAGATCCG....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TAAA--GGCAGTCCCATCCGGAGGC..................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................TCCCATCCGGAGGCTTGGA-----------------------------------------------T.............................................................	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.................................TAAA--GGCAGTCCCATCCG.......................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................GGCAGTCCCATCCGGAGGCTTGG..............................................................................................................	23	20	0.25	5	0	5	0	0	0	0	0	0	0	0
....................................................................................................................................................TCCGAAATGTCCGTGAGGAAAGC.	23	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.............................................CCCATCCGGAGGCTTGGA-----------------------------------------------..............................................................	18	20	0.15	3	0	3	0	0	0	0	0	0	0	0

Generated: 05/15/2015 at 03:11 PM