dpe_299

ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGTCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCAAGAGTACCTAGGCTATCGCCGGATAGTACTGACGGGACCCTGTCGGACTAAGAATTACTACGAAGGTCTTTGCTA *********************************((((((((((....((....(((.(((((.((((((....((((........))))....))))))...))))).)))...)))))).))))))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo
...............................................................................................AGAGTACCTAGGCTATCGCCGGAT...................................................	24	0	5	32.00	160	135	11	14
...............................................................................................AGAGTACCTAGGCTATCGCCGGATA..................................................	25	0	5	8.80	44	36	3	5
...............................................................................................AGAGTACCTAGGCTATCGCCGGA....................................................	23	0	20	4.95	99	99	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGATAG.................................................	26	0	5	2.80	14	7	6	1
................................................................................................GAGTACCTAGGCTATCGCCGGAT...................................................	23	0	6	2.00	12	12	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGATAA.................................................	26	1	8	1.13	9	6	3	0
..............................................................................................AAGAGTACCTAGGCTATCGCCGG.....................................................	23	0	1	1.00	1	1	0	0
...............................................................................................AGAGTACCGAGGCTATCGCCGGAT...................................................	24	1	14	0.93	13	13	0	0
...............................................................................................AGAGTACCAAGGCTATCGCCGGAT...................................................	24	1	5	0.80	4	4	0	0
................................................................................................GAGTACCTAGGCTATCGCCGGATA..................................................	24	0	6	0.67	4	4	0	0
................................................................................................GAGTACCTAGGCTATCGCCGGATAG.................................................	25	0	6	0.67	4	4	0	0
...............................................................................................AGAGTACCAAGGCTATCGCCGGATA..................................................	25	1	5	0.20	1	1	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGCT...................................................	24	1	5	0.20	1	0	0	1
...............................................................................................AGAGTACCTAGGCTATCGCCGGATT..................................................	25	1	10	0.20	2	2	0	0
...............................................................................................AGAGTACCTAGGATATCGCCGGATA..................................................	25	1	5	0.20	1	0	1	0
...............................................................................................AGAGTACCTAGCCTATCGCCGGATA..................................................	25	1	6	0.17	1	1	0	0
..................................................................................................GTACCTAGGCTATCGCCGGATAG.................................................	23	0	6	0.17	1	1	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGGT...................................................	24	1	6	0.17	1	0	0	1
.................................................................................................AGTACCTAGGCTATCGCCGGATA..................................................	23	0	6	0.17	1	1	0	0
...............................................................................................AGAGTACCGAGGCTATCGCCGGATA..................................................	25	1	12	0.17	2	2	0	0
.................................................................................................AGTACCTAGGCTATCGCCGGAT...................................................	22	0	6	0.17	1	1	0	0
........................................................................................ATCGACAAGACAACCTAGG...............................................................	19	3	7	0.14	1	1	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGCTAA.................................................	26	2	8	0.13	1	0	1	0
.............................GGACCCTGTCGCACCACGA..........................................................................................................................	19	3	20	0.10	2	2	0	0
...............................................................................................AGAGTACCAAGGCTATCGCCGGATT..................................................	25	2	10	0.10	1	1	0	0
...............................................................................................GGAGTACCTAGGCTATCGCCGGAT...................................................	24	1	10	0.10	1	1	0	0
...............................................................................................AGAGTACCGAGGCTATCGCCGGATAG.................................................	26	1	12	0.08	1	1	0	0
...............................................................................................AGAGTACCTATGCTATCGCCGGAT...................................................	24	1	16	0.06	1	1	0	0
...............................................................................................AGAGTACCAAGGCTATCGCCGGA....................................................	23	1	20	0.05	1	1	0	0
...............................................................................................AGAGTACCCAGGCTATCGGCGGAT...................................................	24	2	20	0.05	1	0	0	1
..............................................................................................AGCAGTACCTAGGCTACCGCCGGA....................................................	24	3	20	0.05	1	1	0	0

ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGTCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCAAGAGTACCTAGGCTATCGCCGGATAGTACTGACGGGACCCTGTCGGACTAAGAATTACTACGAAGGTCTTTGCTA
***********************************((((((((((....((....(((.(((((.((((((....((((........))))....))))))...))))).)))...)))))).))))))......***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042
female body

M021
embryo

V042
embryo

...............................................................................................AGAGTACCTAGGCTATCGCCGGAT...................................................

32.00

160

135

...............................................................................................AGAGTACCTAGGCTATCGCCGGATA..................................................

8.80

...............................................................................................AGAGTACCTAGGCTATCGCCGGA....................................................

4.95

...............................................................................................AGAGTACCTAGGCTATCGCCGGATAG.................................................

2.80

................................................................................................GAGTACCTAGGCTATCGCCGGAT...................................................

2.00

...............................................................................................AGAGTACCTAGGCTATCGCCGGATAA.................................................

1.13

..............................................................................................AAGAGTACCTAGGCTATCGCCGG.....................................................

1.00

...............................................................................................AGAGTACCGAGGCTATCGCCGGAT...................................................

0.93

...............................................................................................AGAGTACCAAGGCTATCGCCGGAT...................................................

0.80

................................................................................................GAGTACCTAGGCTATCGCCGGATA..................................................

0.67

................................................................................................GAGTACCTAGGCTATCGCCGGATAG.................................................

0.67

...............................................................................................AGAGTACCAAGGCTATCGCCGGATA..................................................

0.20

...............................................................................................AGAGTACCTAGGCTATCGCCGGCT...................................................

0.20

...............................................................................................AGAGTACCTAGGCTATCGCCGGATT..................................................

0.20

...............................................................................................AGAGTACCTAGGATATCGCCGGATA..................................................

0.20

...............................................................................................AGAGTACCTAGCCTATCGCCGGATA..................................................

0.17

..................................................................................................GTACCTAGGCTATCGCCGGATAG.................................................

0.17

...............................................................................................AGAGTACCTAGGCTATCGCCGGGT...................................................

0.17

.................................................................................................AGTACCTAGGCTATCGCCGGATA..................................................

0.17

...............................................................................................AGAGTACCGAGGCTATCGCCGGATA..................................................

0.17

.................................................................................................AGTACCTAGGCTATCGCCGGAT...................................................

0.17

........................................................................................ATCGACAAGACAACCTAGG...............................................................

0.14

...............................................................................................AGAGTACCTAGGCTATCGCCGGCTAA.................................................

0.13

.............................GGACCCTGTCGCACCACGA..........................................................................................................................

0.10

...............................................................................................AGAGTACCAAGGCTATCGCCGGATT..................................................

0.10

...............................................................................................GGAGTACCTAGGCTATCGCCGGAT...................................................

0.10

...............................................................................................AGAGTACCGAGGCTATCGCCGGATAG.................................................

0.08

...............................................................................................AGAGTACCTATGCTATCGCCGGAT...................................................

0.06

...............................................................................................AGAGTACCAAGGCTATCGCCGGA....................................................

0.05

...............................................................................................AGAGTACCCAGGCTATCGGCGGAT...................................................

0.05

..............................................................................................AGCAGTACCTAGGCTACCGCCGGA....................................................

0.05

TGGATCCGATAGCAGCCTATCATGAAGGCCCTGGGACAGCCTGATTCTTAATTATGCTTCCAGAAACGAGACGATCTATGGCTGTCAATAGCGGTTCTCATGGATCCGATAGCGGCCTATCATGACTGCCCTGGGACAGCCTGATTCTTAATGATGCTTCCAGAAACGAT *********************************((((((((((....((....(((.(((((.((((((....((((........))))....))))))...))))).)))...)))))).))))))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V111 male body	V050 head	V057 head
................................GGGACAGCCTGATTCTTAAT......................................................................................................................	20	0	20	2.80	56	48	3	0	5	0	0
....................................................................................................................................GGGACAGCCTGATTCTTAAT..................	20	0	20	2.80	56	48	3	0	5	0	0
....................................................................................................................................GGGACAGCCTGATTCTTAATGATGCT............	26	0	20	1.15	23	17	5	1	0	0	0
.................................GGACAGCCTGATTCTTAAT......................................................................................................................	19	0	20	1.05	21	14	5	2	0	0	0
...............................................................................GGCTGTCAATAGCGGTTCTCATGGAT.................................................................	26	0	1	1.00	1	1	0	0	0	0	0
................................GGGACAGCCTGATTCTTAATTATGCTTC..............................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................GGACAGCCTGATTCTTAATGATGCT............	25	0	20	0.65	13	13	0	0	0	0	0
.......................................................................................................................................ACAGCCTGATTCTTAATGATGCT............	23	0	20	0.45	9	9	0	0	0	0	0
.....................................................................................................................................GGACAGCCTGATTCTTAAT..................	19	0	20	0.35	7	0	5	2	0	0	0
...............................TGGGACAGCCTGATTCTTAA.......................................................................................................................	20	0	3	0.33	1	1	0	0	0	0	0
................................................................................................................................CCCTGGGACAGCCTGATTCTTAAT..................	24	0	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................TGGGACAGCCTGATTCTTAA...................	20	0	3	0.33	1	1	0	0	0	0	0
............................CCCTGGGACAGCCTGATTCTTAAT......................................................................................................................	24	0	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................TGGTACAGCCTGATTCTTAAT..................	21	1	4	0.25	1	0	0	1	0	0	0
...............................TGGTACAGCCTGATTCTTAAT......................................................................................................................	21	1	4	0.25	1	0	0	1	0	0	0
....................................................................................................................................GGGACAGCCTGATTCTTAA...................	19	0	20	0.20	4	4	0	0	0	0	0
................................GGGACAGCCTGATTCTTAA.......................................................................................................................	19	0	20	0.20	4	4	0	0	0	0	0
.................................................................................................TTGCGGATCCGATAGCGGCCTATCAT...............................................	26	3	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................GGACAGCCTGATTCTTAA...................	18	0	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................GGGACAGCCTGATTCTTAATGATGC.............	25	0	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................ACAGCCTGATTCTTAATGATGC.............	22	0	20	0.10	2	2	0	0	0	0	0
.................................GGACAGCCTGATTCTTAA.......................................................................................................................	18	0	20	0.10	2	2	0	0	0	0	0
................................GGGACAGCCTGCTTCTTAAT......................................................................................................................	20	1	20	0.10	2	2	0	0	0	0	0
....................................................................................................CGGATCCGATAGCGGCCTATCATGA.............................................	25	1	14	0.07	1	1	0	0	0	0	0
.........................AGGCCCCGGGAGAGCTTGAT.............................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................GGACAGCCTGATTCTTAATGATGC.............	24	0	20	0.05	1	1	0	0	0	0	0
.............................CCTGCGACAGCCTGATTCTTAAT......................................................................................................................	23	1	20	0.05	1	1	0	0	0	0	0
...................................................................................................GCGGATCCGATAGCGGCCTATCAT...............................................	24	2	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................GGGACAGCCTGATTCTGAAT..................	20	1	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................GACAGCCTGATTCTTAATGATGCT............	24	0	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................GGGACAGCCTGGTTCTTAAT..................	20	1	20	0.05	1	1	0	0	0	0	0
................................TGGACAGCCTGATTCTTAAT......................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................GGACAGCCTGATTCTTAATGATGCA............	25	1	20	0.05	1	1	0	0	0	0	0
....................................................................AGACGAACTTTGGCTATCA...................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................CCTGCGACAGCCTGATTCTTAAT..................	23	1	20	0.05	1	1	0	0	0	0	0

TGGATCCGATAGCAGCCTATCATGAAGGCCCTGGGACAGCCTGATTCTTAATTATGCTTCCAGAAACGAGACGATCTATGGCTGTCAATAGCGGTTCTCATGGATCCGATAGCGGCCTATCATGACTGCCCTGGGACAGCCTGATTCTTAATGATGCTTCCAGAAACGAT
***********************************((((((((((....((....(((.(((((.((((((....((((........))))....))))))...))))).)))...)))))).))))))......***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M042
female body

M021
embryo

V042
embryo

V111
male body

V050
head

V057
head

................................GGGACAGCCTGATTCTTAAT......................................................................................................................

2.80

....................................................................................................................................GGGACAGCCTGATTCTTAAT..................

2.80

....................................................................................................................................GGGACAGCCTGATTCTTAATGATGCT............

1.15

.................................GGACAGCCTGATTCTTAAT......................................................................................................................

1.05

...............................................................................GGCTGTCAATAGCGGTTCTCATGGAT.................................................................

1.00

................................GGGACAGCCTGATTCTTAATTATGCTTC..............................................................................................................

1.00

.....................................................................................................................................GGACAGCCTGATTCTTAATGATGCT............

0.65

.......................................................................................................................................ACAGCCTGATTCTTAATGATGCT............

0.45

.....................................................................................................................................GGACAGCCTGATTCTTAAT..................

0.35

...............................TGGGACAGCCTGATTCTTAA.......................................................................................................................

0.33

................................................................................................................................CCCTGGGACAGCCTGATTCTTAAT..................

0.33

...................................................................................................................................TGGGACAGCCTGATTCTTAA...................

0.33

............................CCCTGGGACAGCCTGATTCTTAAT......................................................................................................................

0.33

...................................................................................................................................TGGTACAGCCTGATTCTTAAT..................

0.25

...............................TGGTACAGCCTGATTCTTAAT......................................................................................................................

0.25

....................................................................................................................................GGGACAGCCTGATTCTTAA...................

0.20

................................GGGACAGCCTGATTCTTAA.......................................................................................................................

0.20

.................................................................................................TTGCGGATCCGATAGCGGCCTATCAT...............................................

0.10

.....................................................................................................................................GGACAGCCTGATTCTTAA...................

0.10

....................................................................................................................................GGGACAGCCTGATTCTTAATGATGC.............

0.10

.......................................................................................................................................ACAGCCTGATTCTTAATGATGC.............

0.10

.................................GGACAGCCTGATTCTTAA.......................................................................................................................

0.10

................................GGGACAGCCTGCTTCTTAAT......................................................................................................................

0.10

....................................................................................................CGGATCCGATAGCGGCCTATCATGA.............................................

0.07

.........................AGGCCCCGGGAGAGCTTGAT.............................................................................................................................

0.05

.....................................................................................................................................GGACAGCCTGATTCTTAATGATGC.............

0.05

.............................CCTGCGACAGCCTGATTCTTAAT......................................................................................................................

0.05

...................................................................................................GCGGATCCGATAGCGGCCTATCAT...............................................

0.05

....................................................................................................................................GGGACAGCCTGATTCTGAAT..................

0.05

......................................................................................................................................GACAGCCTGATTCTTAATGATGCT............

0.05

....................................................................................................................................GGGACAGCCTGGTTCTTAAT..................

0.05

................................TGGACAGCCTGATTCTTAAT......................................................................................................................

0.05

.....................................................................................................................................GGACAGCCTGATTCTTAATGATGCA............

0.05

....................................................................AGACGAACTTTGGCTATCA...................................................................................

0.05

.................................................................................................................................CCTGCGACAGCCTGATTCTTAAT..................

0.05

Species	Coordinate	ID	Alignment
droPer2	scaffold_3:478466-478635 -	dpe_299	ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGTCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCAAGAGTACCTAGGCTATCGCCGGATAGTACTGACGGGACCCTGTCGGACTAAGAATTACTACGAAGGTCTTTGCTA------
dp5	2:18140966-18141141 -		ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGCCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCGAGAGTACCTAAGCTATCGCCGGATAGTACTTACGGGACACTGTCGGCCTAAAAATTACTACGAAGGTCTTGGCTATGCTGA

Species

Coordinate

Alignment

droPer2

scaffold_3:478466-478635 -

dpe_299

ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGTCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCAAGAGTACCTAGGCTATCGCCGGATAGTACTGACGGGACCCTGTCGGACTAAGAATTACTACGAAGGTCTTTGCTA------

dp5

2:18140966-18141141 -

ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGCCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCGAGAGTACCTAAGCTATCGCCGGATAGTACTTACGGGACACTGTCGGCCTAAAAATTACTACGAAGGTCTTGGCTATGCTGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGTCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCAAGAGTACCTAGGCTATCGCCGGATAGTACTGACGGGACCCTGTCGGACTAAGAATTACTACGAAGGTCTTTGCTA------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................AGAGTACCTAGGCTATCGCCGGAT.........................................................	24	5	32.00	160	11	135	14	0	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGATA........................................................	25	5	8.80	44	3	36	5	0	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGA..........................................................	23	20	4.95	99	0	99	0	0	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGATAG.......................................................	26	5	2.80	14	6	7	1	0	0	0
................................................................................................GAGTACCTAGGCTATCGCCGGAT.........................................................	23	6	2.00	12	0	12	0	0	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGATAA.......................................................	26	8	1.13	9	3	6	0	0	0	0
..............................................................................................AAGAGTACCTAGGCTATCGCCGG...........................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................GAGTACCTAGGCTATCGCCGGATA........................................................	24	6	0.67	4	0	4	0	0	0	0
................................................................................................GAGTACCTAGGCTATCGCCGGATAG.......................................................	25	6	0.67	4	0	4	0	0	0	0
...............................................................................................AGAGTACCTAGGCTATCGCCGGATT........................................................	25	10	0.20	2	0	2	0	0	0	0
..................................................................................................GTACCTAGGCTATCGCCGGATAG.......................................................	23	6	0.17	1	0	1	0	0	0	0
.................................................................................................AGTACCTAGGCTATCGCCGGATA........................................................	23	6	0.17	1	0	1	0	0	0	0
.................................................................................................AGTACCTAGGCTATCGCCGGAT.........................................................	22	6	0.17	1	0	1	0	0	0	0

dp5

ACCTAGGCTATCGTCGGATAGTACTTCCGGGACCCTGCCGGACTAAGAATTAATACGAAGGTCTTTGCTCTGCTAGATACCGACAGTTATCGCCGAGAGTACCTAAGCTATCGCCGGATAGTACTTACGGGACACTGTCGGCCTAAAAATTACTACGAAGGTCTTGGCTATGCTGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................TACTACGAAGGTCTTGGCTATGC...	23	1	5.00	5	0	4	1	0	0	0	0	0	0	0
...............................................................................................AGAGTACCTAAGCTATCGCCGG...........................................................	22	1	4.00	4	0	3	0	0	0	0	0	0	1	0
......................................................................................................................................................TACTACGAAGGTCTTGGCTATGCTG.	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..................................................TAATACGAAGGTCTTTGCTCTGCT......................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................CTAAGAATTAATACGAAGGTCT................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.............................................................................TACCGACAGTTATCGCCGAGAGTACC.........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TACTACGAAGGTCTTGGCTATG....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................GTCGGCCTAAAAATTACTACGAAGG...............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...TAGGCTATCGTCGGATAGTACTTCC....................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................AGAGTACCTAAGCTATCGCCGGATA........................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TACTACGAAGGTCTTGGCTATGCTGA	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TAAAAATTACTACGAAGGTCTTGGC........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................ACCGACAGTTATCGCCGAGAGTACC.........................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................ACTTACGGGACACTGTCGGCC.................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................TTTGCTCTGCTAGATACCGACAGTTA.......................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
....................................................................TCTGCTAGATACCGACAGTTATCGC...................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................CGGACTAAGAATTAATACGAAGGTC.................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................TAGATACCGACAGTTATCG....................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GAGTACCTAAGCTATCGCCGGA..........................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GAGTACCTAAGCTATCGCCGG...........................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TCGCCGGATAGTACTTACGG..............................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................CGGGACCCTGCCGGACTAAGAAG..............................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	1	0
................................CCCTGCCGGACTAAGAAGG.............................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0

dpe_299

scaffold_3:478516-478585 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.8	-23.5	-23.3