ID:

dpe_292

 Coordinate:

scaffold_15:330109-330153 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.3 -33.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_10:1208862-1208880 +
  2. scaffold_22:156175-156193 +
  3. scaffold_185:22841-22859 +
  4. scaffold_173:599-617 +
  5. scaffold_0:2206114-2206132 +
  6. scaffold_0:3346889-3346907 +
  7. scaffold_6:4080109-4080127 +
  8. scaffold_3:65364-65382 +
  9. scaffold_4:6424787-6424805 +
  10. scaffold_9:2196321-2196339 +
  11. scaffold_1169:66-84 +
  12. scaffold_17:251224-251242 +
  13. scaffold_14:1971753-1971771 +
  14. scaffold_15:1214533-1214551 +
  15. scaffold_20:626444-626462 +
  16. scaffold_186:40407-40425 +
  17. scaffold_2842:2557-2575 +
  18. scaffold_3613:2124-2142 +
  19. scaffold_4003:847-865 +
  20. scaffold_2195:786-804 +
  21. scaffold_0:3855634-3855652 +
  22. scaffold_2:5354010-5354028 +
  23. dpe_292  scaffold_15:330134-330152 +
  24. scaffold_16:964547-964565 +
  25. scaffold_19:993041-993059 +
  26. scaffold_46:125433-125451 +
  27. dpe_312  scaffold_32:938219-938237 +
  28. scaffold_5642:697-715 +
star

Sense Strand Reads

ACACTGATCCCGAACCGAAACACGTGCGTGTAACAGTAATGAGTTACACCACTAACCATACTGTATACTGTACAGTATACTGTATGGTTAGTGGTTACATCATGTCTTGCTCACACACCTTTCATATTTGAATACTTTTTATAGT
***********************************...((((((...((((((((((((((.(((((((....))))))).)))))))))))))).)).)))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V050
head
 V057
head
 M042
female body
 V042
embryo
.............................................................................TACTGTATGGTTAGTGGTTACA.............................................. 22 0 2 8.50 17 8 3 2 2 2
.............................................................................TACTGTATGGTTAGTGGTTAC............................................... 21 0 2 1.50 3 1 1 1 0 0
............................................................................ATACTGTATGGTTAGTGGTTAC............................................... 22 0 2 1.50 3 0 1 0 1 1
...........................................................................TATACTGTATGGTTAGTGG................................................... 19 0 20 1.45 29 29 0 0 0 0
.............................................................................TACTGTATGGTTAGTGGTTACAT............................................. 23 0 2 1.00 2 2 0 0 0 0
.............................................................................TACTGTATGGGTAGTGGGTACA.............................................. 22 2 2 0.50 1 0 0 1 0 0
.............................................................................TACTGGATGGTTAGTGGTTAC............................................... 21 1 2 0.50 1 0 0 1 0 0
...........................................................................TATACTGTATGGTTAGTGGTT................................................. 21 0 20 0.20 4 4 0 0 0 0
............................................................................ATACTGTATGGTTAGTGGTTA................................................ 21 0 18 0.17 3 1 1 1 0 0
............................................................................ATACTGTATGGTTAGTGGTT................................................. 20 0 20 0.10 2 0 2 0 0 0
...........................................................................TATACTGTATGGTTAGTGGT.................................................. 20 0 20 0.10 2 0 2 0 0 0
.............................................................................TACTGTATGGTTAGTGGTTA................................................ 20 0 18 0.06 1 0 0 1 0 0
...........................................................................TATACTGTATGGTTATTGGT.................................................. 20 1 20 0.05 1 0 0 1 0 0
..........................................................................GTATACTGTATGGTTAGTGGT.................................................. 21 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGTGACTAGGGCTTGGCTTTGTGCACGCACATTGTCATTACTCAATGTGGTGATTGGTATGACATATGACATGTCATATGACATACCAATCACCAATGTAGTACAGAACGAGTGTGTGGAAAGTATAAACTTATGAAAAATATCA
***********************************...((((((...((((((((((((((.(((((((....))))))).)))))))))))))).)).)))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V111
male body
.............................................TGTGGTGATTGGTATGACAT................................................................................ 20 0 1 1.00 1 1 0
............................................ATGTGGTGATTGGTATGACAT................................................................................ 21 0 1 1.00 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_15:330059-330203 + dpe_292 ACACTGATCCCGAACCGAAACACGTGCGTGTAACAGTAATGAGTTACACCACTAACCATACTGTATACTGTACAGTATACTGTATGGTTAGTGGTTACATCATGTCTTGCTCACACACCTTTCATATTTGAATACTTTTTATAGT
dp5 XL_group1a:7973125-7973218 + ACACTGATCCGGAACCGAAACACGTGCGTGTAACAGTAATGAGTTGCACC---------------------------------------------------ATGTCTTGGTCACACACCCTTCATATTTGAATACTTTTTATGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACACTGATCCCGAACCGAAACACGTGCGTGTAACAGTAATGAGTTACACCACTAACCATACTGTATACTGTACAGTATACTGTATGGTTAGTGGTTACATCATGTCTTGCTCACACACCTTTCATATTTGAATACTTTTTATAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................TACTGTATGGTTAGTGGTTACA..............................................2228.5017022328
.............................................................................TACTGTATGGTTAGTGGTTAC...............................................2121.503000111
............................................................................ATACTGTATGGTTAGTGGTTAC...............................................2221.503011100
...........................................................................TATACTGTATGGTTAGTGG...................................................19201.45290000029
.............................................................................TACTGTATGGTTAGTGGTTACAT.............................................2321.002000002
...........................................................................TATACTGTATGGTTAGTGGTT.................................................21200.204000004
............................................................................ATACTGTATGGTTAGTGGTTA................................................21180.173000111
............................................................................ATACTGTATGGTTAGTGGTT.................................................20200.102000200
...........................................................................TATACTGTATGGTTAGTGGT..................................................20200.102000200
.............................................................................TACTGTATGGTTAGTGGTTA................................................20180.061000010
..........................................................................GTATACTGTATGGTTAGTGGT..................................................21200.051000010
dp5
ACACTGATCCGGAACCGAAACACGTGCGTGTAACAGTAATGAGTTGCACC---------------------------------------------------ATGTCTTGGTCACACACCCTTCATATTTGAATACTTTTTATGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads

Generated: 05/15/2015 at 03:08 PM