ID:

dpe_289

 Coordinate:

scaffold_2518:2891-2980 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_768:4816-4838 +
  2. scaffold_1232:5816-5838 -
  3. dpe_289  scaffold_2518:2892-2914 -
star
  1. scaffold_3031:1799-1821 -
  2. scaffold_872:3544-3566 +
  3. scaffold_336:2214-2236 -
  4. scaffold_1517:3809-3831 +
  5. dpe_289  scaffold_2518:2931-2953 -
  6. scaffold_8790:267-289 -

Sense Strand Reads

TGGTCCGAGTTATTGGCCGCATCCGAGTGGCTGCTGGTCCGGCCACCAGGATGCGTTGTCGATTTTGTTGATTGGCCGCATCCAAGTGGCTCTGGTCCGGCCACAAGGATGCGTTGTCAGTAGAATTGGCCTGGCCTCCTCGGCCATGTTCATCGTCGGGTTGATGGTGTAATTTTGAGTGGCTGCTGGT
**************************************************************........(((((((((((((..((((((.......))))))..)))))))..)))))).(((((((((.((...))..))))).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V057
head
 V042
embryo
....................................................................................................................TCAGTAGAATTGGCCTGGCCTCC................................................... 23 0 3 5.33 16 11 5 0 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCTCCT.................................................. 24 0 3 4.33 13 8 3 2 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCTC.................................................... 22 0 3 2.67 8 6 2 0 0 0
..................................................................................................................TGTCAGTAGAATTGGCCTGGCCTCC................................................... 25 0 3 2.33 7 1 6 0 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCT..................................................... 21 0 3 1.67 5 1 4 0 0 0
...........................................................................................................GATGCGTTTTCAGTAGAATTGGCCTGGCC...................................................... 29 1 2 1.00 2 0 2 0 0 0
..................................................................................................................TGTCAGTAGAATTGGCCTGGCCT..................................................... 23 0 3 1.00 3 0 3 0 0 0
.....................................................................................................................CAGTAGAATTGGCCTGGCCTCC................................................... 22 0 3 1.00 3 3 0 0 0 0
...................................................................................................................................................................ATGGTGTAATTTTGAGTGGCTG..... 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................TAATTTTGAGTGGCTGCTGG. 20 0 6 1.00 6 5 0 0 0 1
..............................................................................................................GCGTTTTCAGTAGAATTGGCCTGGCC...................................................... 26 1 2 1.00 2 1 1 0 0 0
................................................................................................CCGGCCACAAGGATGCGTTG.......................................................................... 20 0 1 1.00 1 1 0 0 0 0
...............................TGCTGGTCCGGCCACCAGGATGCGTTG.................................................................................................................................... 27 0 20 0.70 14 14 0 0 0 0
...................................................................................................................TTCAGTAGAATTGGCCTGGC....................................................... 20 1 3 0.67 2 0 2 0 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTC................................................. 25 0 3 0.67 2 1 1 0 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTCG................................................ 26 0 3 0.67 2 2 0 0 0 0
...................................................................................................................................................GTACATCGTCGCGCTGATGGT...................... 21 3 3 0.67 2 0 2 0 0 0
..............................................................................................GACCGGCCACAAGGTTGCGTT........................................................................... 21 2 2 0.50 1 0 0 0 1 0
.........................................................................................................................................................................TAATTTTGAGTGGCTGCTGGT 21 0 6 0.50 3 3 0 0 0 0
.........................................................................................................................................................................TAATTTTGAGTGGCTGCTG.. 19 0 6 0.50 3 3 0 0 0 0
.....................................................................................................................................................................GGTGTAATTTTGAGTGGCTGT.... 21 1 5 0.40 2 0 0 2 0 0
..................................................................................................................TGTCAGTAAAATTGGCCTGGCCTCC................................................... 25 1 3 0.33 1 0 1 0 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTCGGC.............................................. 28 0 3 0.33 1 1 0 0 0 0
..................................................................................................................TGTCAGTAAAATTGGCCTGGCCT..................................................... 23 1 3 0.33 1 1 0 0 0 0
....................................................................................................................TCAGTAGAAGTGGCCTGGCCTC.................................................... 22 1 3 0.33 1 0 1 0 0 0
...................................................................................................................GTCAGTAGAATTGGCCTGGCCTCC................................................... 24 0 3 0.33 1 1 0 0 0 0
...............................................................................................................CGTTGTCAGTAGAATTGGCCTGG........................................................ 23 0 3 0.33 1 1 0 0 0 0
.................................................................................................................TTGTCAGTAGAATTGGCCTGGCC...................................................... 23 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................GTAGAATTGGCCTGGCCTCC................................................... 20 0 3 0.33 1 0 1 0 0 0
....................................................................................................................TCAGGAGAATTGGCCTGGCCT..................................................... 21 1 3 0.33 1 0 1 0 0 0
................................................................................................................GTTGTCAGTAGAATTGGCCTGGCCT..................................................... 25 0 3 0.33 1 0 1 0 0 0
....................................................................................................................TCAGTAGAGTTGGCCTGGCCT..................................................... 21 1 3 0.33 1 1 0 0 0 0
....................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTCGG............................................... 27 0 3 0.33 1 1 0 0 0 0
..................................................................................................................TGTCAGTAGAATTGGCCTGGCCTCCT.................................................. 26 0 3 0.33 1 1 0 0 0 0
.............................................................................................................TGCGTTTTCAGTAGAATTGG............................................................. 20 1 3 0.33 1 1 0 0 0 0
...................................................................................................................GTCAGTAGAATTGGCCTGG........................................................ 19 0 3 0.33 1 0 1 0 0 0
..............................................................................................................GCGTTGTCAGTAGAATTGGC............................................................ 20 0 3 0.33 1 1 0 0 0 0
...............................................................................................................CGTTTTCAGTAGAATTGGCCTGGCC...................................................... 25 1 3 0.33 1 0 1 0 0 0
...................................................................................................................TTCAGTAGAATTGGCCTGGCCTC.................................................... 23 1 3 0.33 1 1 0 0 0 0
......................................................................................................................AGTAGAATTGGCCTGGCCT..................................................... 19 0 3 0.33 1 0 1 0 0 0
....................................................................................................................TCAGTAGAATTGACCTGGCCTC.................................................... 22 1 4 0.25 1 1 0 0 0 0
...............................TGCTGGTCCGGCCACCAGGATGC........................................................................................................................................ 23 0 20 0.25 5 5 0 0 0 0
.................................................................................................................TTGTCAGTAGAATTGGCCTG......................................................... 20 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCTG.. 24 0 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................TGGTGTAATTTTGAGTGGC....... 19 0 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCT... 23 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................GGTGTAATTTTGAGTGGCTGCTGG. 24 0 5 0.20 1 0 0 1 0 0
.....................................................................................................................................................................GGTGTAATTTTGAGTGGCTGC.... 21 0 5 0.20 1 1 0 0 0 0
......................................................................................................................................................................GTGTAATTTTGAGTGGCTGCT... 21 0 5 0.20 1 0 1 0 0 0
....................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCTGG. 25 0 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................TCGAGTTGATGGTGTAATTTTGAGTGGC....... 28 1 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCGGGC 26 2 5 0.20 1 0 0 1 0 0
....................................................................................................................................................................TGGTGTAAGTTTGAGTGGCTGCTA.. 24 2 5 0.20 1 1 0 0 0 0
..................................................................................................................................................................TGTGGTGTAATTTTGAGTGGC....... 21 2 5 0.20 1 1 0 0 0 0
.........................................................................................................................................................................TAATTTTGAGTGGCTGTTGT. 20 2 6 0.17 1 0 0 0 0 1
.......................................................................................................................................................................TGTAATTTTGAGTGGCTGCT... 20 0 6 0.17 1 1 0 0 0 0
..........................................................................................................................................................................AATTTTGAGTGGCTGCTG.. 18 0 6 0.17 1 1 0 0 0 0
.............................................................................GCATCCAAGTGGCTCTGGTCCGG.......................................................................................... 23 0 6 0.17 1 1 0 0 0 0
........................................................................................................................................................................GTAATTTTGAGTGGCTGCTA.. 20 1 6 0.17 1 1 0 0 0 0
...............................................................TTTGTTGATTGGCCGCATCCAAGAG...................................................................................................... 25 1 6 0.17 1 1 0 0 0 0
..................................................................................CAAGTGGCTCTGGTCCGGCC........................................................................................ 20 0 6 0.17 1 1 0 0 0 0
...............................................................TTTGTTGATTGGCCGCATCCAAG........................................................................................................ 23 0 6 0.17 1 1 0 0 0 0
.......................................................................TTGGCCGCATCCAAGTGGCTCTGGTCCG........................................................................................... 28 0 6 0.17 1 0 1 0 0 0
................................................................TTGTTGATTGGCCGCATCCAAGTGG..................................................................................................... 25 0 6 0.17 1 1 0 0 0 0
.......................................................................................................................................................................TGTAATTTTGAGTGGCTGCTGG. 22 0 6 0.17 1 1 0 0 0 0
.....................................TCCGGCCACCAGGATGCGTTGTCAA................................................................................................................................ 25 1 20 0.15 3 3 0 0 0 0
................................................................................TCCAAGTGTCTCTGGTCCGG.......................................................................................... 20 1 7 0.14 1 1 0 0 0 0
.................................................................................................................TTTTCTGTAGAATTGGCCT.......................................................... 19 2 8 0.13 1 0 1 0 0 0
...................CATCCGAGTGGCTGCTGGTC....................................................................................................................................................... 20 0 20 0.10 2 0 0 2 0 0
...............................TGCTGGTCCGGCCACCAGGATGT........................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
..................................TGGTCCGGGCACCAGGATGCGT...................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
......................................CCGGCCACCAGGATGCGTTGTCAA................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
.....................................TCCGGCCAGCAGGATGCGTTGTC.................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0
.....................................TCCGGCCAGCAGGATGCGTTGTCGATTT............................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0
...............................TGCTGGTCCGGCCACCAGGATGCGTA..................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 1
............................GGCTGCTGGTCCGGCCACCAGGA........................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................CCACCAGGATGCGTTGTCGT................................................................................................................................ 20 1 20 0.05 1 0 0 1 0 0
...............................TGCTGGTCGGGCCACCAGGATGCA....................................................................................................................................... 24 2 20 0.05 1 1 0 0 0 0
.....................................TCCGGCCACCAGGATGCGT...................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 1
.........TTATTGGCCGCATCCGAGTGGCTGC............................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.............TGGCCGCATCCGAGTGGCTGCTGG......................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..........TATTGGCCGCATCCGAGTGGCTGCTG.......................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACCAGGCTCAATAACCGGCGTAGGCTCACCGACGACCAGGCCGGTGGTCCTACGCAACAGCTAAAACAACTAACCGGCGTAGGTTCACCGAGACCAGGCCGGTGTTCCTACGCAACAGTCATCTTAACCGGACCGGAGGAGCCGGTACAAGTAGCAGCCCAACTACCACATTAAAACTCACCGACGACCA
************************************........(((((((((((((..((((((.......))))))..)))))))..)))))).(((((((((.((...))..))))).))))...************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body
.........................................CGGTGGTCCTACGCAACAGCTAAA............................................................................................................................. 24 0 20 0.40 8 8 0 0
..........................................GGTGGTCCTACGCAACAGCTAAA............................................................................................................................. 23 0 20 0.35 7 7 0 0
.......................GCTCACCGACGACCAGGCCGGT................................................................................................................................................. 22 0 20 0.25 5 5 0 0
.......................................GCCGGTGGTCCTACGCAAC.................................................................................................................................... 19 0 20 0.15 3 0 3 0
.........................................CGGTGGTCCTACGCAACAGCT................................................................................................................................ 21 0 20 0.10 2 2 0 0
.....................AGGCTCACCGACGACCAGGCCGGT................................................................................................................................................. 24 0 20 0.10 2 2 0 0
........................................CCGGTGGTCCTACGCAACAGCTAAA............................................................................................................................. 25 0 20 0.10 2 2 0 0
.........AATAACCGGCGTAGGCTCACCGAC............................................................................................................................................................. 24 0 20 0.10 2 2 0 0
......................................GGCCGGTGGTCCTACGCAACAGCTAAA............................................................................................................................. 27 0 20 0.10 2 2 0 0
..................................ACCAGGCCGGTGGTCCTAC......................................................................................................................................... 19 0 20 0.10 2 0 2 0
...................................................................AACTAACCGGCGTAGGTTCACCG.................................................................................................... 23 0 12 0.08 1 1 0 0
...................................................................................................CGGTGTTCCTGCGGAATAG........................................................................ 19 3 18 0.06 1 1 0 0
....................................CAGGCCGGTGGTCCTACGCAACAGCT................................................................................................................................ 26 0 20 0.05 1 1 0 0
.........................................CGGTGGTCCTACGAAACAGCTA............................................................................................................................... 22 1 20 0.05 1 1 0 0
................................CGACCAGGCCGGTGGTCCTACGCAAC.................................................................................................................................... 26 0 20 0.05 1 1 0 0
.........................................CGGTGGTCCTACGCAACAGCTAA.............................................................................................................................. 23 0 20 0.05 1 1 0 0
.............................CGACGACCAGGCCGGTGGTC............................................................................................................................................. 20 0 20 0.05 1 1 0 0
........................................ACGGTGGTCCTACGCAACAGCTAAA............................................................................................................................. 25 1 20 0.05 1 1 0 0
.........................................CGGTGGTCCTACGCACCAGCTAAA............................................................................................................................. 24 1 20 0.05 1 1 0 0
............................................TGGTCCTACGCAACAGCTAA.............................................................................................................................. 20 0 20 0.05 1 1 0 0
..............................GACGACCAGGCCGGTGGTCCTACGC....................................................................................................................................... 25 0 20 0.05 1 1 0 0
............................................TGGTCCTACGCAACAGCTA............................................................................................................................... 19 0 20 0.05 1 1 0 0
...........................................GTGGTCCTACGCAACAGCTAAA............................................................................................................................. 22 0 20 0.05 1 1 0 0
.......................GCTCACCGACGACCAGGC..................................................................................................................................................... 18 0 20 0.05 1 1 0 0
..................................ACCAGGCCGGTGGTCCTACGCA...................................................................................................................................... 22 0 20 0.05 1 0 1 0
......................................GGCCGGTGGTCCTACGCAA..................................................................................................................................... 19 0 20 0.05 1 0 0 1
.....................................AGGCCGGTGGTCCTACGCAACAGCT................................................................................................................................ 25 0 20 0.05 1 1 0 0
.......................................GCCGGTGGTCCTACGCAACAGCTAAA............................................................................................................................. 26 0 20 0.05 1 1 0 0
.....................................AGGCCGGTGGTCCTACGCAAC.................................................................................................................................... 21 0 20 0.05 1 1 0 0
...................GTAGGCTCACCGACGACCAGGC..................................................................................................................................................... 22 0 20 0.05 1 1 0 0
........................................CCGGTGGTCCTACGCAACAG.................................................................................................................................. 20 0 20 0.05 1 1 0 0
...................................CCAGGCCGGTGGTCCTACGCAACAGCT................................................................................................................................ 27 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2518:2841-3030 - dpe_289 TGGTCCGAGTTATTGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCC-GAGT--------G---------------------GCTGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGAT-GCGT-----------------T-GTCGA--------------TTTTGTTGATTGGCCGCATCCAAGTGGCTCTGGTCCGGCCACAAGGA-------------------------------------TGCGTTGTCAGTAGAATTGGCCTGGCCTCCTCGGCCATGTTCATCGTCGGGTTGATGGTGTAATTTTGAGTGGCTGCTGG------------------------T
dp5 Unknown_singleton_1425:3813-4000 + ATATGTTTTGGGCGTTTTT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------TTATTGTGTTT-TAGT--------G---------------------GCTGGCCTCTGGACTTCTGTTGAAATTG---ACGGTAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCCCATTATGCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGAGGCAGCTGCT----------------------------GGAGGGG-------------------------------------------------------CAGCTCTGTCGGTTT
droWil2 scf2_1100000003738:545-712 - TTGTCCGTTGTCCCATGTTGCCTGTTGTGTTGTATTTTTTATTT-----------------TATTTT----------------------------------------------------------A----------------------------TAG------------C-TATTAAGGTTTGGGTTTTGGTTGGCTGA------------------------------TCTGC----------------------------------------------------------------------------TGCTGCTGT---TGCTGTTGCTGCTTTTGCT-TTAGCCCCATGTGGTTTGTTCAAGAAATGTT-------------------------------------------------------------------------------------------------------------------------------AAATGGTCCCAAAGCAA----------------------------------------------------------------------------------------------------------TTGC
droVir3 scaffold_13050:2023268-2023396 + AGTAGCTGGCCC--------CT--------------------------------------------CGAGGTCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--TCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATTTAAAGTAACTTTAATAAACGTGC--------GAAGCAGCC------------------------------GCTGCAGG-------------------------------------------------------CAGACAAGTCGGCAG
droMoj3 scaffold_6442:34657-34867 + CTATGCTTGTGCACATACT-----------------------------------------------CATCGTCTATTCTATGCGTACAGACAGAAGCGCGCCTTTTCTCATATTCTTAGAATTTCGATTG--ATTTCTGGACTTTCTAGCCGTT---ACTGTAGTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------TT---T---GAT-GACGCT--CT-----------------------------------------------------------CTAATTA-AGCTATTATATTTTAGCAACT-GACTG-----------------------------------------CTTGAGCAAAGCAGC--------GGCGCGGGT------------------------------GCTAAGGG-------------------------------------------------------CGACGCAAGTAATGT
droGri2 scaffold_15203:10303374-10303444 + GCCCCTTGGACC--------CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAGTCCTTGCAGGGGAGTGG-------------------------------------------------------------------------------------------------------------------------------GG--------GGAGCTGGA------------------------------TGAGGAGG-------------------------------------------------------CAACCCGTTCGACTT
droAna3 scaffold_12916:4627370-4627546 + TTTCTTTGCCAGT--------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCAGCTGGA-------------------ACTGG--TACTGGTAGTGGTA----------------------------GTGGTGGTGG---TGCTATTGC---T---GAT-GGTGCT--T------------------------------------------------------------------C-AGCCA--------------GA-GTCGGTTTGGCTGTGGAAGTGTGGCTTAAGATTACTCTACAAGAAG-------------------------------------CTTTAATTGCAGAAGCGATTAGGAAGGAAAGCG-------------------------------------------------------CCGATACTTCAGTTG
droBip1 scf7180000396691:1474675-1474883 - TATGTCATACGAGGATTTT--------------------CATTC-----------------AATCTC----------------------------------------------------------G----------------------------TTG------------T-CTTTTACATTACTGCTTCTGTTTCTGTT------------------------------TCTGTTGCTGCT-------------------CTTGC--TATTTCTAGCGCGG----------------------------ACACTGCCGC---TACTACTGT---T---GCT-GTCGCT--TTATGGCATAGTCAAC-----------------------------------------------AATTTTATTTGTTACACATAC-------------------------------------------------GA-------------------------------------CCCGTTGCCAGGAGCAGCCTCCCTACACGCCCG----------------------------------------------------------TTCTCAGCCGTTTC
droKik1 scf7180000299857:1030-1093 + GAGTATTTTTTAAGATTTT--------------------------------------------TG--------------------------------------------------------GTTTTG-----------TT-------------------CG-------------TTT--------------------------------TTGA-TT---------G-----------------------------------------------------------------------TTT------TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTTGGTTTT----TG------------------------T
droFic1 scf7180000454068:76850-76911 - AACTTTTTTTTTTGTTTAT--------------------------------------------TTTT----------------------------------------------------------G----------------------------TTG------------A-TTTTTT--------------------------------TAAA-AT---------GT-----------------------------------------------------------------------TTTT-----------------TTGTTT---ATTTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------G
droEle1 scf7180000491193:4895585-4895659 + TGTTTTCTTTT-TATTTCT--------------------------------------------CA--------------------------------------------------------TTTTTA------------------------------------------T-TTCTCT--------------------------------TTTT-TT---------G-----------------------------------------------------------------------TTTTTCATTTTATTT---------------------------------------------------------------------------------------------------------T-AGCCA--------------TC-ATCCTTTCG------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------T
droRho1 scf7180000779334:55671-55857 + TTGCTGTTGTTG--------TCTAGTGTGGCCAATTTATCGTTG-----------------C----------------------------------------------------------------------ATTT-GG---------------CAA------------C-TGGCTGG--TGAAATTTTG-T-G-CT--CGCTTTGATCTTGA-C---------------------------------------------------------GCGTTTTTGACACTCGCCGGGCATTTCGTCGATTT------------------------------TACTCTCAGCCTCGGG---------------AAAGA-------------------------------------------------------------------------------------------------------------------------------AA--------TACAACGGA------------------------------TGAGGTAG-------------------------------CG----------GACAGCCGGCGGCATGTGCATGTGCCT
droBia1 scf7180000302140:125616-125770 - GTACAGATGTGTTTTTCCA----------------------TATAAGGTAATTTTGTAATAT----------------------------------------------------------------------ATTT-AAGGATATCTGGTGCGT---TGTAGTTT----------------------------------------------------------------------------ATTTCTGTTAT-TAAT--------G------GTAGTGTGGTTGCTTACTAAGCAGCTGGTCTACAAGCTCATTG---CCCATAA---TGCCGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------GGCCTGGGCCC
droTak1 scf7180000414649:12641-12796 + TTTTGTCCTTTT--------TT-------------------------------------------------------------------------------------------------------A-------------------------------------------AAAT-TGT--------------------------------TTGCCCTTTTTTCTCTTT----------------------TTTTTGGTGTATCTGTCCTGTTTTTAA---------------------------------------------------------------------------------------AGCTGAGTGATGGCAGCACTGATTACGACACACATTTTGCTTGATTTAAGAAAAT-------------------------------------------A------GTGTCTAAAGTT-----------------------------------------------------------------------AAGAGC-------------------------------------------------------AATCTGTATTGACTT
droEug1 scf7180000409554:2851250-2851315 + AATTTCACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACGCCTCAGGTCGAAGGGATCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--CTGCC----------------------------AAATGGA-------------------------------------------------------CTGCCCTGGCATTTG
dm3 chr2R:1486160-1486206 + TTTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCTTTGTATAT-TAAT--------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:5987-6058 + TAACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------T
droSec2 scaffold_14:19868-19939 + TAACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------T
droYak3 v2_chr2h_random_017:4381-4537 + TTTATGGGTTTT--------TCT-------------------GT-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGTTGCTTTCTGATGAAC---TGTGTATTGTTGC-TGCTG-----------------------------------------------------------------TTGAAATATTT-TCTT--------C---------------------TTCGCCTACCACGTTTTCTTCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATAAAGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTACCTTCTA
droEre2 scaffold_4858:182445-182479 + CAAGTTTGGTCCT--------T---------------------------------------------------------------------------------------------------------------------------------------TATGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGGTCCGAGTTATTGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCC-GAGT--------G---------------------GCTGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGAT-GCGT-----------------T-GTCGA--------------TTTTGTTGATTGGCCGCATCCAAGTGGCTCTGGTCCGGCCACAAGGA-------------------------------------TGCGTTGTCAGTAGAATTGGCCTGGCCTCCTCGGCCATGTTCATCGTCGGGTTGATGGTGTAATTTTGAGTGGCTGCTGG------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTCC...........................................................................2335.33165110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTCCT..........................................................................2434.3313380002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTC............................................................................2232.678260000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGTAGAATTGGCCTGGCCTCC...........................................................................2532.337610000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCT.............................................................................2131.675410000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGTAGAATTGGCCTGGCCT.............................................................................2331.003300000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGAATTGGCCTGGCCTCC...........................................................................2231.003030000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGTAATTTTGAGTGGCTG.............................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGAGTGGCTGCTGG------------------------.2061.006051000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCCACAAGGA-------------------------------------TGCGTTG..................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................TGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGAT-GCGT-----------------T-G...............................................................................................................................................................................................................27200.70140140000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTC.........................................................................2530.672110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTCG........................................................................2630.672020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGAGTGGCTGCTGG------------------------T2160.503030000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGAGTGGCTGCTG..........................1960.503030000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTAATTTTGAGTGGCTGT............................2150.402000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTCGGC......................................................................2830.331010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTAGAATTGGCCTGGCCTCC...........................................................................2430.331010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGTCAGTAGAATTGGCCTGG................................................................................2330.331010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAGTAGAATTGGCCTGGCC..............................................................................2330.331010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAATTGGCCTGGCCTCC...........................................................................2030.331100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGTAGAATTGGCCTGGCCT.............................................................................2530.331100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTAGAATTGGCCTGGCCTCCTCGG.......................................................................2730.331010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGTAGAATTGGCCTGGCCTCCT..........................................................................2630.331010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTAGAATTGGCCTGG................................................................................1930.331100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGTCAGTAGAATTGGC....................................................................................2030.331010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGAATTGGCCTGGCCT.............................................................................1930.331100000
.................................................................................................................................................................................................................................................................................................TGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGAT-GC.....................................................................................................................................................................................................................................23200.255050000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAGTAGAATTGGCCTG.................................................................................2040.251010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCTG..........................2450.201010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAATTTTGAGTGGC...............................1950.201010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCT...........................2350.201010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTAATTTTGAGTGGCTGCTGG------------------------.2450.201000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTAATTTTGAGTGGCTGC............................2150.201010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAATTTTGAGTGGCTGCT...........................2150.201100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTAATTTTGAGTGGCTGCTGG------------------------.2550.201010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATTTTGAGTGGCTGCT...........................2060.171010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGAGTGGCTGCTG..........................1860.171010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCCAAGTGGCTCTGGTCCGG.......................................................................................................................................................2360.171010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTTGAGTGGCTGCTA..........................2060.171010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGGCTCTGGTCCGGCC.....................................................................................................................................................2060.171010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTGATTGGCCGCATCCAAG.....................................................................................................................................................................2360.171010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCGCATCCAAGTGGCTCTGGTCCG........................................................................................................................................................2860.171100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGATTGGCCGCATCCAAGTGG..................................................................................................................................................................2560.171010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATTTTGAGTGGCTGCTGG------------------------.2260.171010000
.......................................................................................................................................................................................................................................................CATCC-GAGT--------G---------------------GCTGC-------------------------------------------------------------------------------------TGGTC.....................................................................................................................................................................................................................................................20200.102000002
.................................................................................................................................................................................................................................................................................................TGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGAT-GT.....................................................................................................................................................................................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................TGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGAT-GCGT-----------------A-................................................................................................................................................................................................................26200.051001000
.........................................................................................................................................................................................................................................................................G---------------------GCTGC-------------------------------------------------------------------------------------TGGTCCGGCCACCAGGA.........................................................................................................................................................................................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................CCACCAGGAT-GCGT-----------------T-GTCGT--------------.............................................................................................................................................................................................20200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................TCCGGCCACCAGGAT-GCGT-----------------..................................................................................................................................................................................................................19200.051001000
.........TTATTGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCC-GAGT--------G---------------------GCTGC-------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................25200.051010000
.............TGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCC-GAGT--------G---------------------GCTGC-------------------------------------------------------------------------------------TGG.......................................................................................................................................................................................................................................................24200.051010000
..........TATTGGCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCC-GAGT--------G---------------------GCTGC-------------------------------------------------------------------------------------TG........................................................................................................................................................................................................................................................26200.051010000
dp5
ATATGTTTTGGGCGTTTTT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------TTATTGTGTTT-TAGT--------G---------------------GCTGGCCTCTGGACTTCTGTTGAAATTG---ACGGTAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCCCATTATGCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGAGGCAGCTGCT----------------------------GGAGGGG-------------------------------------------------------CAGCTCTGTCGGTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................TCTGGACTTCTGTTGAAATTG---ACGG.................................................................................................................................................................................................................................................................................................................25155.005504400002900
............................................................................................................................................................................................................................................................................................................CTTCTGTTGAAATTG---ACGGTAG---T..........................................................................................................................................................................................................................................................................................................23111.001100000001100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGG......................................................................................................................2128.501701700000000
.......................................................................................................................................................................................................................................................................................................CTGGACTTCTGTTGAAATTG---ACG..................................................................................................................................................................................................................................................................................................................2318.0080800000000
......................................................................................................................................................................................................................................................................................................TCTGGACTTCTGTTGAAATTG---ACG..................................................................................................................................................................................................................................................................................................................2418.0080800000000
.......................................................................................................................................................................................................................................................................................................CTGGACTTCTGTTGAAATTG---ACGG.................................................................................................................................................................................................................................................................................................................2416.0060600000000
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GAT-GAGG.........................................................................................................................................................................................................................................................................................2516.0060000000600
................................................................................................................................................................................A--------------------------------TTGACT----------GTTT------------TTATTGTGTT........................................................................................................................................................................................................................................................................................................................................................................................2114.0040100000300
..................................................................................................................................................................................................................TGACT----------GTTT------------TTATTGTGTTT-TAGT--------..........................................................................................................................................................................................................................................................................................................................................................................2414.0040400000000
............................................................................................................................................................................................................................................................................................................CTTCTGTTGAAATTG---ACGGTA...............................................................................................................................................................................................................................................................................................................2114.0040000000400
.............................................................................................................................................................................................................................................................................................................TTCTGTTGAAATTG---ACGGTAG---TGC........................................................................................................................................................................................................................................................................................................2414.0040200000200
............................................................................................................................................................................................................................................................................................................CTTCTGTTGAAATTG---ACGGTAG---TGC........................................................................................................................................................................................................................................................................................................2514.0040000000400
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GAT-GA...........................................................................................................................................................................................................................................................................................2314.0040000000400
..................................................................................................................................................................................................................TGACT----------GTTT------------TTATTGTGTTT-TAGT--------G---------------------GC..................................................................................................................................................................................................................................................................................................................................................2713.0030200001000
..................................................................................................................................................................................................................TGACT----------GTTT------------TTATTGTGTTT-TAG...................................................................................................................................................................................................................................................................................................................................................................................2313.0030300000000
......................................................................................................................................................................................................................................................................................................TCTGGACTTCTGTTGAAATTG---ACGGT................................................................................................................................................................................................................................................................................................................2613.0030200000100
..................................................................................................................................................................................................................TGACT----------GTTT------------TTATTGTGTTT-TAGT--------G---------------------....................................................................................................................................................................................................................................................................................................................................................2513.0030300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGGC.....................................................................................................................2222.5050500000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTG.......................................................................................................................2022.5050500000000
.....................................................................................................................................................................................................................................................TGTGTTT-TAGT--------G---------------------GCTGGCCTCTG.........................................................................................................................................................................................................................................................................................................................................2322.5050500000000
........................................................................................................................................................................................................................................................................................................TGGACTTCTGTTGAAATTG---ACGG.................................................................................................................................................................................................................................................................................................................2312.0020200000000
......TTTGGGCGTTTTT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................TG---ACGGTAG---TGCTGCT---GAT-GAGG.........................................................................................................................................................................................................................................................................................2312.0020200000000
.......................................................................................................................................................................................................................................................................................................CTGGACTTCTGTTGAAATTG---ACGGTAG---...........................................................................................................................................................................................................................................................................................................2712.0020200000000
............................................................................................................................................................................................................................................................................................................CTTCTGTTGAAATTG---ACGGTAG---...........................................................................................................................................................................................................................................................................................................2212.0020000000200
..................................................................................................................................................................................................................TGACT----------GTTT------------TTATTGTGTTT-TAGT--------G---------------------G...................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
........................................................................................................................................................................................................................................................................................................................TTG---ACGGTAG---TGCTGCT---GAT-GAGGCC--T....................................................................................................................................................................................................................................................................................2712.0020000000200
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GAT-G............................................................................................................................................................................................................................................................................................2212.0020200000000
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GAT-GAGGC........................................................................................................................................................................................................................................................................................2612.0020000000200
........................................................................................................................................................................................................................................................................................................................................TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATT..................................................................................................................................................................................................................2432.0060600000000
...................................................................................................................................................................................................................................................................................................................TGAAATTG---ACGGTAG---TGCTGCT---G................................................................................................................................................................................................................................................................................................2312.0020100000100
............................................................................................................................TG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------TTATTT............................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000200
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCCC............................................................................................................................................................................................................2731.6750500000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGT........................................................................................................................1921.5030300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCG....................................................................................................................2321.5030300000000
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGC..............................................................................................................................................................................................................2531.3340400000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGC........................................................................................................................................................................................................................................................................................1831.3340400000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CA......................................................................................................................................................................................................................2331.3340400000000
.................TT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...............................................................................................................................................................................................................................................................................................................CTGTTGAAATTG---ACGGTAG---T..........................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GAT-GAGGCC--.....................................................................................................................................................................................................................................................................................2711.0010000000100
............CGTTTTT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAG------------------------------------------------AGTTGC---------AGGAGTGG......................................................................................................................2021.0020200000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--T....................................................................................................................................................................................................................................................................................2031.0030300000000
.........................................................................................................................................................................................................................................................................G---------------------GCTGGCCTCTGGACTTCTGTTGAAAT..........................................................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................TAGT--------G---------------------GCTGGCCTCTGGACTTC...................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................TTGACT----------GTTT------------TTATTGTGTTT-TAGT--------G---------------------G...................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................ACGGTAG---TGCTGCT---GAT-GAG..........................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................TG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------TTATTG............................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................GGCCTCTGGACTTCTGTTGAA............................................................................................................................................................................................................................................................................................................................2111.0010100000000
........TGGGCGTTTTT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TT................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------C.......................................................................................................................................................................................................................2231.0030200100000
........................................................................................................................................................................................................................................................................................................................................TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------C.......................................................................................................................................................................................................................1931.0030300000000
....................................................................................................................................................................................................................................................................................................................GAAATTG---ACGGTAG---TGCTGCT---GAT-G............................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................TGTGTTT-TAGT--------G---------------------GCTGGCCTCTGG........................................................................................................................................................................................................................................................................................................................................2421.0020200000000
.......................................................................................................................................................................................................................................................................................................CTGGACTTCTGTTGAAATTG---AC...................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................TT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
........................................................................................................................................................................................................................................................................................................TGGACTTCTGTTGAAATTG---AC...................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................T-GAA--------------------------------TTGACT----------GTTT------------TTATTGTGTTT-......................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................TGAAATTG---ACGGTAG---TGCTGCT---GAT-GG...........................................................................................................................................................................................................................................................................................2711.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGAGG.................................................................................................................2621.0020100001000
.............................................................................................................................................................................................................................................................................................................TTCTGTTGAAATTG---ACGGTAG---TGCTG......................................................................................................................................................................................................................................................................................................2611.0010100000000
.......TTGGGCGTTTTT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................TT--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------TA................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGAG..................................................................................................................2521.0020200000000
........................................................................................................................................................................................................................................................................................................................TTG---ACGGTAG---TGCTGCT---GAT-GAGG.........................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGA...................................................................................................................2421.0020200000000
..........................................................................................................................................................................................................................................................................................................................G---ACGGTAG---TGCTGCT---GAT-GAGGC........................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAG------------------------------------------------AGTTGC---------AGGAGTGG......................................................................................................................1921.0020100000100
...................................................................................................................................................................................................................GACT----------GTTT------------TTATTGTGTTT-TAGT--------..........................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................GTTT------------TTATTGTGTTT-TAGT--------G---------------------G...................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GAT-GAG..........................................................................................................................................................................................................................................................................................2411.0010000000100
...............................................................................................................................................................................................................................................................................................................................CGGTAG---TGCTGCT---GAT-GAGG.........................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCCTCAATAG------------------------------------------------AGTTGC---------AGGAG.........................................................................................................................2521.0020100000100
............................................................................................................................TG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------TTATTGT...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
..............................................................................................................................................................................................................................................................................................................TCTGTTGAAATTG---ACGGTAG---TGC........................................................................................................................................................................................................................................................................................................2311.0010000000100
..............................................................................................................................................................................................................................................................................................................TCTGTTGAAATTG---ACGGTAG---TGCTGC.....................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................................................................................................................................................................................TTGAAATTG---ACGGTAG---TGCTGCT---GA...............................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................CGGTAG---TGCTGCT---GAT-GAG..........................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................GTTGAAATTG---ACGGTAG---TGC........................................................................................................................................................................................................................................................................................................2011.0010000000100
........................................................................................................................................................................................................................................................................................................................TTG---ACGGTAG---TGCTGCT---GAT-GAGGCC--.....................................................................................................................................................................................................................................................................................2611.0010000000100
.............................................................................................................................................................................................................................................................................................................TTCTGTTGAAATTG---ACGGTAG---TGCT.......................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAA....................................................................................................................................................................................................................2531.0030300000000
..................................................................................................................................................................................................................................................................................................................TTGAAATTG---ACGGTAG---TGCTGC.....................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................ATTG---ACGGTAG---TGCTGCT---GA...............................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................TCTGGACTTCTGTTGAAATTG---AC...................................................................................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................GAAATTG---ACGGTAG---TGCTGCT---G................................................................................................................................................................................................................................................................................................2211.0010100000000
..................T--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------T.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
....................................................................................................................................................................................................................................................................................................................GAAATTG---ACGGTAG---TGCTGCT---GA...............................................................................................................................................................................................................................................................................................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................TGAAATTG---ACGGTAG---TGCTA......................................................................................................................................................................................................................................................................................................2011.0010000100000
......................................................................................................................................................................................................................................................................................................TCTGGACTTCTGTTGAAATTG---ACGGA................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................................TG---ACGGTAG---TGCTGCT---GAT-GAGGCC--T....................................................................................................................................................................................................................................................................................2611.0010100000000
..................T--------------------------------------------TG--------------------------------------------------------TGTTG-------------------------------------------GCGT-GAA--------------------------------TTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000100
................................................................................................................................................................................................................................................................................................................................GGTAG---TGCTGCT---GAT-GAGG.........................................................................................................................................................................................................................................................................................1931.0030300000000
............................................................................................................................TG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------T.................................................................................................................................................................................................................................................................................................................................................................................................2040.7530100000200
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGA........................................................................................................................................................................................................................................................................................1830.6720100100000
.................................................................................................................................................................................................................................................................................................................................GTAG---TGCTGCT---GAT-GAGGCC--T....................................................................................................................................................................................................................................................................................2130.6720200000000
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCCCA...........................................................................................................................................................................................................2830.6720200000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAA.....................................................................................................................................................................................................................2430.6720200000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAAT...................................................................................................................................................................................................................2630.6720200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTGGCGAGGCAGCTG...........................................................................................................1920.5010100000000
.......................................................................................................................................................................................................................................................TGTTT-TAGT--------G---------------------GCTGGCCTCTGGA.......................................................................................................................................................................................................................................................................................................................................2320.5010100000000
....................................................................................................................................................................................................................................................TTGTGTTT-TAGT--------G---------------------GCTGGCCTCT..........................................................................................................................................................................................................................................................................................................................................2320.5010100000000
................................................................................................................................................................................................................................................................................................CTGGCCTCTGGACTTCTGTT...............................................................................................................................................................................................................................................................................................................................2020.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATAG------------------------------------------------AGTTGC---------AGGAGT........................................................................................................................2020.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTG.......................................................................................................................2420.5010100000000
.......................................................................................................................................................................................................................................................TGTTT-TAGT--------G---------------------GCTGGCCTCTGGAC......................................................................................................................................................................................................................................................................................................................................2420.5010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTGG......................................................................................................................2420.5010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATTATGCCTCAATAG------------------------------------------------AG...........................................................................................................................................2020.5010100000000
.....................................................................................................................................................................................................................................................TGTGTTT-TAGT--------G---------------------GCTGGCCTC...........................................................................................................................................................................................................................................................................................................................................2120.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGC---------AGGAGTGGCGAGGC................................................................................................................2020.5010100000000
.................................................................................................................................................................................................................................................TTATTGTGTTT-TAGT--------G---------------------GCTGGC..............................................................................................................................................................................................................................................................................................................................................2220.5010010000000
......................................................................................................................................................................................................................................................GTGTTT-TAGT--------G---------------------GCTGGCCTCTGG........................................................................................................................................................................................................................................................................................................................................2320.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGAGG.................................................................................................................2720.5010100000000
......................................................................................................................................................................................................................................................................................................TCTGGACTTCTGTTGAAATTG---AAA..................................................................................................................................................................................................................................................................................................................2420.5010100000000
.............................................................................................................................................................................................................................................................TAGT--------G---------------------GCTGGCCTCTGGACT.....................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCCTCAATAG------------------------------------------------AGTTGC---------A.............................................................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................GTGTTT-TAGT--------G---------------------GCTGGCCT............................................................................................................................................................................................................................................................................................................................................1920.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTGG......................................................................................................................2520.5010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAG------------------------------------------------AGTTGC---------AGGAGTGGCGA...................................................................................................................2320.5010100000000
...........................................................................................................................TTG-------------------------------------------GCGT-GAA--------------------------------TTGACT----------GTTT------------T.................................................................................................................................................................................................................................................................................................................................................................................................2120.5010010000000
.....................................................................................................................................................................................................................................................TGTGTTT-TAGT--------G---------------------GCTGGCCTCTGGACA.....................................................................................................................................................................................................................................................................................................................................2720.5010100000000
.............................................................................................................................................................................................................................................................TAGT--------G---------------------GCTGGCCTCTGGACTT....................................................................................................................................................................................................................................................................................................................................2120.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---------AGGAGTGGCGAGGCAGCTC...........................................................................................................2220.5010100000000
.............................................................................................................................................................................................................................................................TAGT--------G---------------------GCTGGCCTCTGGA.......................................................................................................................................................................................................................................................................................................................................1820.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------------------------------------------AGTTGC---------AGGAGTGGCGAGG.................................................................................................................2220.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTGG......................................................................................................................2720.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------------------------------------------AGTTGC---------AGGAGTGGCGAGGCAG..............................................................................................................2520.5010000001000
.........................................................................................................................................................................................................................................................TTT-TAGT--------G---------------------GCTGGCCTCTGGAAAA....................................................................................................................................................................................................................................................................................................................................2420.5010100000000
......................................................................................................................................................................................................................................................GTGTTT-TAGT--------G---------------------GCTGGCC.............................................................................................................................................................................................................................................................................................................................................1820.5010100000000
.......................................................................................................................................................................................................................................................TGTTT-TAGT--------G---------------------GCTGGCCTCTG.........................................................................................................................................................................................................................................................................................................................................2120.5010100000000
..............................................................................................................................................................................................................................................................AGT--------G---------------------GCTGGCCTCTGGACTTC...................................................................................................................................................................................................................................................................................................................................2120.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATAG------------------------------------------------AGTTGC---------AGGAGTGGC.....................................................................................................................2320.5010010000000
.....................................................................................................................................................................................................................................................TGTGTTT-TAGT--------G---------------------GCTGGCCTCT..........................................................................................................................................................................................................................................................................................................................................2220.5010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCAATAG------------------------------------------------AGTTGC---------AGGAGTGGC.....................................................................................................................2520.5010100000000
.......................................................................................................................................................................................................................................................TGTTT-TAGT--------G---------------------GCTGGCCTCTGGACTT....................................................................................................................................................................................................................................................................................................................................2620.5010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAG------------------------------------------------AGTTGC---------AGGAGTGTA.....................................................................................................................2220.5010100000000
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCT.............................................................................................................................................................................................................2630.3310100000000
....................................................................................................................................................................................................................................................................................................................................................T-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCCCATT.........................................................................................................................................................................................................2430.3310100000000
....................................................................................................................................................................................................................................................................................................................................G---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTT.................................................................................................................................................................................................................2630.3310100000000
..........................................................................................................................................................................................................................................................................................................................................CTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTC................................................................................................................................................................................................................2430.3310100000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATT..................................................................................................................................................................................................................2730.3310100000000
................................................................................................................................................................................................................................................................................................................................GGTAG---TGCTGCT---GAT-GAGGCC--TT-----------------------------------------------------------........................................................................................................................................................................................................................2330.3310100000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TT-----------------------------------------------------------........................................................................................................................................................................................................................2130.3310100000000
..................................................................................................................................................................................................................................................................................................................................................GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGC..............................................................................................................................................................................................................2130.3310100000000
....................................................................................................................................................................................................................................................................................................................................................T-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCC.............................................................................................................................................................................................................2030.3310100000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------........................................................................................................................................................................................................................2130.3310100000000
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCG...............................................................................................................................................................................................................2430.3310100000000
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCC.............................................................................................................................................................................................................2630.3310100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---------AGGAGTGGCGAGGCTT..............................................................................................................1930.3310100000000
........................................................................................................................................................................................................................................................................................................................................TGCTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTT.................................................................................................................................................................................................................2530.3310100000000
.................................................................................................................................................................................................................................................................................................................................GTAG---TGCTGCT---GAT-GAGGCC--.....................................................................................................................................................................................................................................................................................2030.3310100000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGT........................................................................................................................................................................................................................................................................................1830.3310100000000
...........................................................................................................................................................................................................................................................................................................................................TGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTC................................................................................................................................................................................................................2330.3310001000000
..................................................................................................................................................................................................................................................................................................................................TAG---TGCTGCT---GAT-GAGGCC--.....................................................................................................................................................................................................................................................................................1930.3310100000000
..........................................................................................................................................................................................................................................................................................................................................CTGCT---GAT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGC..............................................................................................................................................................................................................2630.3310100000000
...................................................................................................................................................................................................................................................................................................................................AG---TGCTGCT---GAT-GAGGCC--T....................................................................................................................................................................................................................................................................................1930.3310100000000
...................................................................................................................................................................................................................................................................................................................................................AT-GAGGCC--TC-----------------------------------------------------------CAAATTTCGCCCATTC........................................................................................................................................................................................................2630.3310100000000
droWil2
TTGTCCGTTGTCCCATGTTGCCTGTTGTGTTGTATTTTTTATTT-----------------TATTTT----------------------------------------------------------A----------------------------TAG------------C-TATTAAGGTTTGGGTTTTGGTTGGCTGA------------------------------TCTGC----------------------------------------------------------------------------TGCTGCTGT---TGCTGTTGCTGCTTTTGCT-TTAGCCCCATGTGGTTTGTTCAAGAAATGTT-------------------------------------------------------------------------------------------------------------------------------AAATGGTCCCAAAGCAA----------------------------------------------------------------------------------------------------------TTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AGTAGCTGGCCC--------CT--------------------------------------------CGAGGTCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--TCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATTTAAAGTAACTTTAATAAACGTGC--------GAAGCAGCC------------------------------GCTGCAGG-------------------------------------------------------CAGACAAGTCGGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................TAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25129.0029002010122430000000001003231200000000001000000000000000000000010
.........................................................................TAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.0020000000100100000000000001045320010000002000000000000000000000000
..............................................................................TAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--TCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------T........................................................................................................................................................................................................................................................................................26111.0011000000101000000000000001023100000000000000000000000000000000002
.........................................................................TAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--TC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2816.006000000000000000000000000002110020000000000000000000000000000000
.........................................................................TAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.005000002000110000000000000000000000000000000000000000000000000001
.........................................................................TAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000002000000000000000000000000
.......................................................................TCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000001000000000000000000000000000001000000000000000000000000
........................................................................................................................................................GT---TGAGCAGTTTTGT--TCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GA-----------------------------------------------------------TA......................................................................................................................................................................................................................2512.002000000002000000000000000000000000000000000000000000000000000000
........................................................................CTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000001000000000000000000000000000000000000000
..........................................................................AGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATAAACGTGC--------GAAGCAGCC------------------------------GCTGCA........................................................................2911.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAACGTGC--------GAAGCAGCC------------------------------GCTGCAG.......................................................................2811.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTT-------------------------------------------A------GCACTTAAATTTAAAGT..............................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................T--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATTTAAAGT..............................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGTGC--------GAAGCAGCC------------------------------GCTGCAGG-------------------------------------------------------...............2611.001000000000000000000000000000000000000000000000000000000000000001
...................................................................GAGGTCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGTAACTTTAATAAACGTGC--------GA...................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTTAATAAACGTGC--------GAAGCAGCC------------------------------GC............................................................................2911.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATT....................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGTAACTTTAATAAACGTGC--------GAA..................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................TCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................AGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
...............................................................................AAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TT--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATTTAAAG...............................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGTGC--------GAAGCAGCC------------------------------GCTGCAG.......................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTAACTTTAATAAACGTGC--------GAAGC................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATTT...................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.....................T--------------------------------------------CGAGGTCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................AGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................AAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GA-----------------------------------------------------------TAAATTT-------------------------------------------A------GCACTTAAATT....................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................GCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTTTGT--TC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................TCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
.....................T--------------------------------------------CGAGGTCTAGCCTAAGCA--------------------------------------------------------------------GT---TGAGCAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
CTATGCTTGTGCACATACT-----------------------------------------------CATCGTCTATTCTATGCGTACAGACAGAAGCGCGCCTTTTCTCATATTCTTAGAATTTCGATTG--ATTTCTGGACTTTCTAGCCGTT---ACTGTAGTTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------TT---T---GAT-GACGCT--CT-----------------------------------------------------------CTAATTA-AGCTATTATATTTTAGCAACT-GACTG-----------------------------------------CTTGAGCAAAGCAGC--------GGCGCGGGT------------------------------GCTAAGGG-------------------------------------------------------CGACGCAAGTAATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................TG--ATTTCTGGACTTTCTAGCCGTT---ACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.70141400000
................................................................................................................................TG--ATTTCTGGACTTTCTAGCCGTT---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.306000060
.........................................................................................................................TTTCGATTG--ATTTCTGGACTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153300000
.........................................................................................................................TTTCGATTG--ATTTCTGGACTTTCTAGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.102200000
............................................................................TCTATGCGTACAGACAGAAGCGCGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102000020
....................................................................................TACAGACAGAAGCGCGCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
.............................................................................................................................................CTTTCTAGCCGTT---ACTGTAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000020
.................................................................................................................TCTTAGAATTTCGATTG--ATTTCTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................................................................TGGACTTTCTAGCCGTT---ACTGTAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
..................................................................CATCGTCTATTCTATGCGTACAGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.........................................................................................................................TTTCGATTG--ATTTCTGGACTTTCTAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...............................................................................................................ATTCTTAGAATTTCGATTG--ATTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................TTTCGATTG--ATTTCTGGACTTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGGT------------------------------GCTAAGGG-------------------------------------------------------CGAC...........20200.051000001
.........................................................................................................................TTTCGATTG--ATTTCTGGACTTTCTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
......................................................................................................................................TTCTGGACTTTCTAGCCGTT---ACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGGT------------------------------GCTAAGGG-------------------------------------------------------CGA............18200.051001000
........................................................................CTATTCTATGCGTACAGACAGAAGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
................................................................................TGCGTACAGACAGAAGCGCGCCTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...........................................................................TTCTATGCGTACAGACAGAAGCGCGCCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGGT------------------------------GCTAAGGG-------------------------------------------------------CGAC...........19200.051100000
...............................................................................ATGCGTACAGACAGAAGCGCGCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.......................................................................................AGACAGAAGCGCGCCTTTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...........................................................................................................................TCGATTG--ATTTCTGGACTTTCTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
...............................................................................................................................TTG--ATTTCTGGACTTTCTAGCCGTT---AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000001
..............................................................................................................................ATTG--ATTTCTGGACTTTCTAGCCGTT---AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
........................................................................................................................ATTTCGATTG--ATTTCTGGACTTTCTAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000010
............................................................................TCTATGCGTACAGACAGAAGCGCGCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000001
.............................................................................................................................GATTG--ATTTCTGGACTTTCTAGCCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT------------------------------GCTAAGGG-------------------------------------------------------CGACGCAA.......19200.051010000
............................................................................TCTATGCGTACAGACAGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
GCCCCTTGGACC--------CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAGTCCTTGCAGGGGAGTGG-------------------------------------------------------------------------------------------------------------------------------GG--------GGAGCTGGA------------------------------TGAGGAGG-------------------------------------------------------CAACCCGTTCGACTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTTCTTTGCCAGT--------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCAGCTGGA-------------------ACTGG--TACTGGTAGTGGTA----------------------------GTGGTGGTGG---TGCTATTGC---T---GAT-GGTGCT--T------------------------------------------------------------------C-AGCCA--------------GA-GTCGGTTTGGCTGTGGAAGTGTGGCTTAAGATTACTCTACAAGAAG-------------------------------------CTTTAATTGCAGAAGCGATTAGGAAGGAAAGCG-------------------------------------------------------CCGATACTTCAGTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATGTCATACGAGGATTTT--------------------CATTC-----------------AATCTC----------------------------------------------------------G----------------------------TTG------------T-CTTTTACATTACTGCTTCTGTTTCTGTT------------------------------TCTGTTGCTGCT-------------------CTTGC--TATTTCTAGCGCGG----------------------------ACACTGCCGC---TACTACTGT---T---GCT-GTCGCT--TTATGGCATAGTCAAC-----------------------------------------------AATTTTATTTGTTACACATAC-------------------------------------------------GA-------------------------------------CCCGTTGCCAGGAGCAGCCTCCCTACACGCCCG----------------------------------------------------------TTCTCAGCCGTTTCSizeHit CountTotal NormTotal
No Reads
droKik1
GAGTATTTTTTAAGATTTT--------------------------------------------TG--------------------------------------------------------GTTTTG-----------TT-------------------CG-------------TTT--------------------------------TTGA-TT---------G-----------------------------------------------------------------------TTT------TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTTTTGGTTTT----TG------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
AACTTTTTTTTTTGTTTAT--------------------------------------------TTTT----------------------------------------------------------G----------------------------TTG------------A-TTTTTT--------------------------------TAAA-AT---------GT-----------------------------------------------------------------------TTTT-----------------TTGTTT---ATTTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------GSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTTCTTTT-TATTTCT--------------------------------------------CA--------------------------------------------------------TTTTTA------------------------------------------T-TTCTCT--------------------------------TTTT-TT---------G-----------------------------------------------------------------------TTTTTCATTTTATTT---------------------------------------------------------------------------------------------------------T-AGCCA--------------TC-ATCCTTTCG------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
TTGCTGTTGTTG--------TCTAGTGTGGCCAATTTATCGTTG-----------------C----------------------------------------------------------------------ATTT-GG---------------CAA------------C-TGGCTGG--TGAAATTTTG-T-G-CT--CGCTTTGATCTTGA-C---------------------------------------------------------GCGTTTTTGACACTCGCCGGGCATTTCGTCGATTT------------------------------TACTCTCAGCCTCGGG---------------AAAGA-------------------------------------------------------------------------------------------------------------------------------AA--------TACAACGGA------------------------------TGAGGTAG-------------------------------CG----------GACAGCCGGCGGCATGTGCATGTGCCTSizeHit CountTotal NormTotal
No Reads
droBia1
GTACAGATGTGTTTTTCCA----------------------TATAAGGTAATTTTGTAATAT----------------------------------------------------------------------ATTT-AAGGATATCTGGTGCGT---TGTAGTTT----------------------------------------------------------------------------ATTTCTGTTAT-TAAT--------G------GTAGTGTGGTTGCTTACTAAGCAGCTGGTCTACAAGCTCATTG---CCCATAA---TGCCGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--------------GGCCTGGGCCCSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTGTCCTTTT--------TT-------------------------------------------------------------------------------------------------------A-------------------------------------------AAAT-TGT--------------------------------TTGCCCTTTTTTCTCTTT----------------------TTTTTGGTGTATCTGTCCTGTTTTTAA---------------------------------------------------------------------------------------AGCTGAGTGATGGCAGCACTGATTACGACACACATTTTGCTTGATTTAAGAAAAT-------------------------------------------A------GTGTCTAAAGTT-----------------------------------------------------------------------AAGAGC-------------------------------------------------------AATCTGTATTGACTTSizeHit CountTotal NormTotal
No Reads
droEug1
AATTTCACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTACGCCTCAGGTCGAAGGGATCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--CTGCC----------------------------AAATGGA-------------------------------------------------------CTGCCCTGGCATTTGSizeHit CountTotal NormTotal
No Reads
dm3
TTTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCTTTGTATAT-TAAT--------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...TTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000300000000000000000000000000
.TTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.TTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...TTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
..TTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTTTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....TTGTGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTTTGTGTTTG-------TTTGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTTTGTGTTTG-------TTTGGTTTT----------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCTTTGTATAT-TAA...................................................................................................................................................................................................................................................................................................................................................................................2740.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................2570.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CC................................................................................................................................................................................................................................................................................................................................................................................................2470.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................T---TTTGCTTT----------------------------------------------------------------------------CCTTTGTATAT-TAAT--------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCTTTGTATAT-TAAT--------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCTTT.............................................................................................................................................................................................................................................................................................................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CC................................................................................................................................................................................................................................................................................................................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCT...............................................................................................................................................................................................................................................................................................................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CCTT..............................................................................................................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................2380.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......TGTTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------CC................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTG-------TTTGGTTTG----------------------------------------------------------------------------------------------------------------------------T---TTTGCTTT----------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
TAACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................TTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGG................................................................................................................................................................................................................................................................................................................................28117.0017004000000100120000
..............................................................................................................................................................................................................................................................................................................AACGGTAATATCG---CCAATAG---AGCTGC.....................................................................................................................................................................................................................................................................................................26115.0015000000000012012000
............................................................................................................................................................................................................................................................................................................TCAACGGTAATATCG---CCAATAG---AGC........................................................................................................................................................................................................................................................................................................2518.00800001000007000000
...........................................................................................................................................................................................................................................................................................................ATCAACGGTAATATCG---CCAATAG---AGC........................................................................................................................................................................................................................................................................................................2618.00800000000008000000
.....TGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GT..................................................................................................................................................................................................................................................................................................................................................2416.00600000030002010000
............................................................................................................................................................................................................................................................................................................TCAACGGTAATATCG---CCAATAG---AGCTGC.....................................................................................................................................................................................................................................................................................................2815.00500000020003000000
TAACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GT..................................................................................................................................................................................................................................................................................................................................................2915.00500000022100000000
...CGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GT..................................................................................................................................................................................................................................................................................................................................................2614.00400000011101000000
.........................................................................................................................................................................................................................................................TTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGT...............................................................................................................................................................................................................................................................................................................................2913.00300010000000020000
...........................................................................................................................................................................................................................................................T-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAA.............................................................................................................................................................................................................................................................................................................................2913.00300000000000030000
.........................................................................................................................................................................................................................................................TTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTA..............................................................................................................................................................................................................................................................................................................................3013.00300000000000030000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCAC...........................................................................................................................................................................................................................................................................................................................................2713.00300000000003000000
...........................................................................................................................................................................................................................................................T-AAAT--------G---------------------GTCGCGCACCGAATCAACGG................................................................................................................................................................................................................................................................................................................................2613.00300000000000030000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCA............................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
..................................................................................................................................................................................................................................................................................................................GTAATATCG---CCAATAG---AGCTGC.....................................................................................................................................................................................................................................................................................................2212.00200000000002000000
..............................................................................................................................................................................................................................................................................................................AACGGTAATATCG---CCAATAG---AGC........................................................................................................................................................................................................................................................................................................2312.00200000000002000000
...................................................................................................................................................................................................................................................GTCATATTT-AAAT--------G---------------------GTCGCGCAC...........................................................................................................................................................................................................................................................................................................................................2312.00200000000002000000
...........................................................................................................................................................................................................................................................T-AAAT--------G---------------------GTCGCGCACCGAATCAACGGT...............................................................................................................................................................................................................................................................................................................................2712.00200000000000020000
....GTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GT..................................................................................................................................................................................................................................................................................................................................................2512.00200000010100000000
.........................................................................................................................................................................................................................................................TTT-AAAT--------G---------------------GTCGCGCACCGAATCAA...................................................................................................................................................................................................................................................................................................................................2512.00200000000002000000
...........................................................................................................................................................................................................................................................................................................ATCAACGGTAATATCG---CCAATAG---A..........................................................................................................................................................................................................................................................................................................2412.00200000000002000000
...........................................................................................................................................................................................................................................................T-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTA..............................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................ATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------T2111.00100000000001000000
.AACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAA--------..........................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..............................................................................................................................................................................................................................................................................................................AACGGTAATATCG---CCAATAG---AGG........................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCG..............................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...................................................................................................................................................................................................................................................................................................................TAATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------T2511.00100000000100000000
..................................................................................................................................................................................................................................................CGTCATATTT-AAAT--------G---------------------GTCGCG..............................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..............................................................................................................................................................................................................................................................................................................AACGGTAATATCG---CCAATAG---AGCTGT.....................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................................................TT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGT...............................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
........................................................................................................................................................................................................................................................................................................CGAATCAACGGTAATATCG---CCAATAG---AGC........................................................................................................................................................................................................................................................................................................2911.00100010000000000000
..........................................................................................................................................................................................................................................................TT-AAAT--------G---------------------GTCGCGCACCGAATCAACGG................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...CGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------..........................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
........TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCAC...........................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.......GTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------G...................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................................................................................................................................................................................TCATATTT-AAAT--------G---------------------GTCGCGCAC...........................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
......................................................................................................................................................................................................................................................ATATTT-AAAT--------G---------------------GTCGCGCACCGAATC.....................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.......................................................................................................................................................................................................................................................TATTT-AAAT--------G---------------------GTCGCGCACCGAA.......................................................................................................................................................................................................................................................................................................................................2311.00100000000100000000
........TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGC.............................................................................................................................................................................................................................................................................................................................................2611.00100000100000000000
.........................................................................................................................................................................................................................................................TTT-AAAT--------G---------------------GTCGCGCACCGAA.......................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
................................................................................................................................................................................................................................................................T--------G---------------------GTCGCGCACCGAATCAACGGTAA.............................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCG................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.............................................................................................................................................................................................................................................................AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAA.............................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
....GTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATA..........................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...................................................................................................................................................................................................................................................................................................................TAATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------.2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................CGAATCAACGGTAATATCG---CCAATAG---A..........................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGC...............................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...............................................................................................................................................................................................................................................................................................................ACGGTAATATCG---CCAATAG---AGCTGC.....................................................................................................................................................................................................................................................................................................2511.00100000000001000000
........................................................................................................................................................................................................................................................................................................CGAATCAACGGTAATATCG---CCAATA...............................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------..........................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
............................................................................................................................................................................................................................................................................................................TCAACGGTAATATCG---CCAATAG---A..........................................................................................................................................................................................................................................................................................................2311.00100000000001000000
......................................................................................................................................................................................................................................................ATATTT-AAAT--------G---------------------GTCGCGCAC...........................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.........................................................................................................................................................................................................................................................TTT-AAAT--------G---------------------GTCGCGCAC...........................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.................................................................................................................................................................................................................................................................................................................GGTAATATCG---CCAATAG---AGC........................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................ATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..........................2111.00100000000001000000
..........................................................................................................................................................................................................................................................TT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTA..............................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
.........TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------G...................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................................................................................................................................................AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAAA............................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
........................................................................................................................................................................................................................................................ATTT-AAAT--------G---------------------GTCGCGCACCGA........................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...................................................................................................................................................................................................................................................GTCATATTT-AAAT--------G---------------------GTCGCGCACCGAA.......................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.......................................................................................................................................................................................................................................................TATTT-AAAT--------G---------------------GTCGCGCACCG.........................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
........................................................................................................................................................................................................................................................................................................CGAATCAACGGTAATATCG---CCAA.................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
TAACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------G...................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..................................................................................................................................................................................................................................................CGTCATATTT-AAAT--------G---------------------GTCGCGCACCGAA.......................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
droSec2
TAACGTGGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTCATATTT-AAAT--------G---------------------GTCGCGCACCGAATCAACGGTAATATCG---CCAATAG---AGCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTATGGGTTTT--------TCT-------------------GT-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGTTGCTTTCTGATGAAC---TGTGTATTGTTGC-TGCTG-----------------------------------------------------------------TTGAAATATTT-TCTT--------C---------------------TTCGCCTACCACGTTTTCTTCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATAAAGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTACCTTCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................TAGGTTTCGTTGCTTTCTGATGAAC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.8517011600000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTACC.....27200.7014001400000000
..............................................................................................................................................TTTCTGATGAAC---TGTGTATTGTTGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.551107400000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTT.........26200.501009100000000
...........................................................................................................................................................................................................................................................................................................GTTTTCTTCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGA......................................................................................................................24200.5010010000000000
................................................................................................................................................TCTGATGAAC---TGTGTATTGTTGC-TGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.45906100200000
.................................................................................................................................................................TATTGTTGC-TGCTG-----------------------------------------------------------------TTGAAATATTT-......................................................................................................................................................................................................................................................................................................................................................................................25200.45900000000009
...........................................................................................................................................TGCTTTCTGATGAAC---TGTGTATTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.40808000000000
.....................CT-------------------GT-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.40801000000007
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTACC.....28200.25504000010000
..................................................................................................................................................TGATGAAC---TGTGTATTGTTGC-TGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.20402200000000
.....................................................................................................................................TTTCGTTGCTTTCTGATGAAC---TGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15303000000000
.....................................................................................................................................................TGAAC---TGTGTATTGTTGC-TGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.15301200000000
......................................................................................................................................TTCGTTGCTTTCTGATGAAC---TGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15300300000000
...............................................................................................................................................TTCTGATGAAC---TGTGTATTGTTGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15300020100000
......................T-------------------GT-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGTTGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10201100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTACCT....24200.10202000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGT..........25200.10202000000000
............................................................................................................................................GCTTTCTGATGAAC---TGTGTATTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
....TGGGTTTT--------TCT-------------------GT-------------------A--------------------------------------------------------ATTTCAATGTAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10200200000000
...........................................T-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGTTGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10201100000000
................................................................................................................................................TCTGATGAAC---TGTGTATTGTTGC-T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
.....................................................................................................................................TTTCGTTGCTTTCTGATGAAC---TGTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
...............................................................................................................................................TTCTGATGAAC---TGTGTATTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
..............................................................................................................................................TTTCTGATGAAC---TGTGTATTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010000000
...........................................................................................................................................TGCTTTCTGATGAAC---TGTGTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
................................................................................................................................................TCTGATGAAC---TGTGTATTGTTGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
..................................................................................................................................................TGATGAAC---TGTGTATTGTTGC-TGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
.................................................................................................................................................CTGATGAAC---TGTGTATTGTTGC-TGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
...........................................................................................................................................TGCTTTCTGATGAAC---TGTGTATTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
...................................................................................................................................................................................................................................................................................................................CAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATAAAGCGTC.............................................................................................................25200.05101000000000
..................................................................................................................................................................................................................................................................................................................TCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATAAAGCGT..............................................................................................................25200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTAC......27200.05101000000000
....................TCT-------------------GT-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05110000000000
...............................................................A--------------------------------------------------------ATTTCAATGTAGGTTTCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.................................................................................................................................................................................................................................................................................................................TTCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATAAAGCG...............................................................................................................25200.05100100000000
.....................................................................................................................................................TGAAC---TGTGTATTGTTGC-TGCTG-----------------------------------------------------------------TT................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
......................................................................................................................................................GAAC---TGTGTATTGTTGC-TGCTG-----------------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
...........................................................................................................................TCAATGTAGGTTTCGTTGCTTTCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
....................................................................................................................................................................TGTTGC-TGCTG-----------------------------------------------------------------TTGAAATATTT-TC....................................................................................................................................................................................................................................................................................................................................................................................24200.05100010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCT----------------------------ACATGAT-------------------------------------------------------TAAGTTTACCTT...25200.05101000000000
..........................................................................................................................................TTGCTTTCTGATGAAC---TGTGTATTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
...........................................................................................................................................TGCTTTCTGATGAAC---TGTGTATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
................................................................................................................................................TCTGATGAAC---TGTGTATTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.............................................................................................................................................................................................................................................................................................................TTTCTTCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATAAAGC................................................................................................................28200.05100000010000
.................................................................................................................................................................TATTGTTGC-TGCTG-----------------------------------------------------------------TTGAAATATTT-TC....................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
......................................................................................................................................TTCGTTGCTTTCTGATGAAC---TGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
...............................................................................................................................................................................G-----------------------------------------------------------------TTGAAATATTT-TCTT--------C---------------------TTCGCCT.............................................................................................................................................................................................................................................................................................................................................24200.05100100000000
..................................................................................................................................................................................................................................................................................................................TCAATTTTG---AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGATA....................................................................................................................19200.05100100000000
............................................................................................................................................GCTTTCTGATGAAC---TGTGTATTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
...................................................................................................................................................................TTGTTGC-TGCTG-----------------------------------------------------------------TTGAAATATTT-TC....................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
..........................................................................................................................................TTGCTTTCTGATGAAC---TGTGTATTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
...........................................T-------------------A--------------------------------------------------------ATTTCAATGTAGGTTTCGTTGCTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
..............................................................................................................................................TTTCTGATGAAC---TGTGTATTGTTGC-TG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
droEre2
CAAGTTTGGTCCT--------T---------------------------------------------------------------------------------------------------------------------------------------TATGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:10 PM