dpe_287

CTCCACCAGATGCCACTTGTCCCGAGGGACATGGCCGTCCTTGGCGCCCCTGTCCAGGACGCCGATTAGGGTCTTGCCCCTCGCAACTCAGCGAACGATCGGTTCGTGAAGTGGGTTTTCACCCGCTTGGCTTGCTGGGCTCGGCCTGGCTGACTAGCGGGATCCTCCGCTGAGCATTGCCGCTTGTTGGGG *********************************((((((.(((......))).)))))).(((...((((...)))).)))...((((((((((.....))))((.((((((((....)))))))).))..))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V050 head	V057 head
..................................................TGTCCAGGACGCCGATTAGGGTCT......................................................................................................................	24	0	3	3.33	10	7	3	0	0
.......................................................................................................TCGTGAAGTGGGTTTTCACCCGCT.................................................................	24	0	1	1.00	1	1	0	0	0
..........................................................................................................................................GCTCGGCCTGGCTGACTAGCGG................................	22	0	1	1.00	1	1	0	0	0
...........................................................................................................................................CTCGGCCTGGCTGACTAGCGG................................	21	0	1	1.00	1	1	0	0	0
..........................................................................................................................................GCTCGGCCTGGCTGACTAGCGGG...............................	23	0	1	1.00	1	1	0	0	0
........................................................................................................................................GGGCTCGGCCTGGCTGACTAGCGG................................	24	0	1	1.00	1	1	0	0	0
.............CACTTGTCCCGAGGGACATGGCCG...........................................................................................................................................................	24	0	5	0.20	1	1	0	0	0
.............CACTTGTCCCGAGGGACATGGC.............................................................................................................................................................	22	0	5	0.20	1	1	0	0	0
......................................................................................CTCAGCGAACGATCGGTTCGTC....................................................................................	22	1	6	0.17	1	0	0	1	0
..........................................................ACGCCGATGAGGGTCTTGCCTCTCGC............................................................................................................	26	2	7	0.14	1	1	0	0	0
.......................................................................................TCCGCGAACGATCGGTACGGG....................................................................................	21	3	8	0.13	1	0	0	0	1
....................................................................................................................TTTCACCCGCTTGGCTTGCTGGGCT...................................................	25	0	14	0.07	1	1	0	0	0
........................................................................................................................ACCCGCTTGGCTTGCTGGGCT...................................................	21	0	20	0.05	1	1	0	0	0

GAGGTGGTCTACGGTGAACAGGGCTCCCTGTACCGGCAGGAACCGCGGGGACAGGTCCTGCGGCTAATCCCAGAACGGGGAGCGTTGAGTCGCTTGCTAGCCAAGCACTTCACCCAAAAGTGGGCGAACCGAACGACCCGAGCCGGACCGACTGATCGCCCTAGGAGGCGACTCGTAACGGCGAACAACCCC ************************************************((((((.(((......))).)))))).(((...((((...)))).)))...((((((((((.....))))((.((((((((....)))))))).))..))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V050 head	V057 head	V111 male body
.......................................................................................AGTCGCTTGCTAGCCAAGCACTTCAC...............................................................................	26	0	1	1.00	1	1	0	0	0
......................................GGAACCGCGGGGACAGGTCCTG....................................................................................................................................	22	0	1	1.00	1	1	0	0	0
........................................................................................GTCGCTTGCTAGCCAAGCACTTCAC...............................................................................	25	0	1	1.00	1	1	0	0	0
..............................................GGGGACAGGTCCTGCGGCTAATCC..........................................................................................................................	24	0	4	0.25	1	1	0	0	0
...............................................GGGACAGGTCCTGCGGCTAATCC..........................................................................................................................	23	0	4	0.25	1	1	0	0	0
................................................GGACAGGTCCTGCGGCTAATCC..........................................................................................................................	22	0	4	0.25	1	1	0	0	0
..............TGCGCAGGGCTCCCTGAACCG.............................................................................................................................................................	21	3	5	0.20	1	0	0	1	0
..............TGAACAGGGCTCCTTGTAACG.............................................................................................................................................................	21	2	5	0.20	1	0	1	0	0
............................................................................................................................CCAACCGATCGACCCAAGC.................................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_110:60961-61152 -	dpe_287	CTCCACCAGATGCCACTTGTCCCGAGGGACATGGCCGTCCTTGGCGCCCCTGTCCAGGACGCCGATTAGGGTCTTGCCCCTCGCAA-CTCAGCGAACGATCGGTTCG-------T-GAAGTGG---GTT------TTCACCCGCTTGGCTTGCTGGGCT-CGGCCTGGCTGACTAGCGGGATCCTCCGCTGAGCA-TTGCCGCT-----------------TGTTGGGG
dp5	Unknown_group_52:18494-18686 +		CTCCACCAGATGACACTTGTCCCGAGGGACATGACCGTCCTCGGCGCCCCTGTCCAGGACGCCGGTTATGGTCTTTCCCTTCGCCATCTCAGCGAACGATCGGTTTG-------T-GAGGTGG---GTT------TTCATCCGCTTGGCTTGCTGGGCT-TGGCCTGGCTGACTAGCGGGATCCTCCGCTGAGCG-TTGCCGCT-----------------TGTTGGGG
droMoj3	scaffold_6500:17456890-17457014 -		TTCGATCCATTTCCAATATCGTCTCGGAATTCTGCCTTCAGCGTGGCCCCGGTCAAATACGCCGATTAGTATGCTATCCTTGGTCATCTCAAAGAGGGATTTGGTTG--------------------GCGGCAG---------CTTGGCATGCT---------------------------------------------------------------------------
droGri2	scaffold_6918:2581-2746 -		TC-CACCCATTTCCACTGATTTCTAGGGATTCTGCCATCCTTGCTTCCCTTGTCAAGTATCCCTATAAGGATTCTTTCCTTGGCAATGTCAGCAAAGGACATTCCCT--------------------GTTGCACCTTGGCCCGTTTTGCGACGGGACCG-------------------TGTGCTTCCTGTGAGCG-CCGCCTTTTA----------------------G
droAna3	scaffold_13221:37403-37584 +		CACCACCTTCCGCCAAAGCTCTAGGGGGATCAGGCTATCTTTGGAGCCATTATCAACGACCCCAATGATGGTCCTGCCCTTAGTAACTTCGGCGAAGGATCTGTTAC-------T-TTGCTGT---GTCTGCACCTTCTTCTTCTTAGCTGGGGGCGCT-------------------TCACCGTCGGTCGACCTATTTCAGCC-----------------TGATCGGG
droBip1	scf7180000393749:15667-15840 -		TACCACTCGTCGCCAAATGTCCTTGGGGATTAGCCCATCCTTGGAGCCCTTGTTCAGGACTCCAATTAGGGTTCTTCCCTTCGTCACTTCGGCGAACTTGCGGTTGG-------A-CGGCTGC---GCTTGGGCCTTCCTCTTCTCAGCCTGGGGGCCT-------------------TCGTCCTCCGTGGACCT-CTGCCTTTT------------------------
droEle1	scf7180000490464:12153-12341 +		CCTGACCAGGCCCCATTGATTTCTGTGTCTCCGACCGCTTTCCTCTTTGCGCTGGAAGACCCCGATGATCTTCCTGTCCTTCACCACCTCCGCGAAGGATTCCGACTATGTTCCTCGGTTGGTGAT---------TCTGGCCTTTTTGCTGGCTGGTTGT------------------GCCACCTCCATCGACCG-CTACCGTTTATTACCA------------ACAGG
droRho1	scf7180000760175:472-660 +		CTCAACCGCCTTCCATTTGTTTCTGGGGATCCTGCTCTCCGGATTTCCCCTATCTATGAGTCCAAGTAGGACCCGATCTTTGGTGATCTCGGCAAAGGAGACCGACG--------------------GCTGGATCTTCGATCTCTTCGCCGACGGGCCG-------------------GGCAGCTCTATGGAGCG-TTGCCTCTTCGCCTGAGCACCTTCTTGTTGGGG
droTak1	scf7180000413979:1948-2139 +		CCTAACCTGACCCCACTGGTTCCTCGGGATCCTGCCGCCTTCATCGTTCTGGTCGATGACGCCGATGATCTTCCGATCCT--ACCACTTCGGCAAAGGATCTAGACCACGTGCCGCGGCTGGTTGT---------CTTGGCCTTCTTGCTCGCTGGTTGA------------------GCCACTTCGATCGACCT-CTCCCGCTTGTTGCTG-------TCGCTTGGTG
droYak3	v2_chr2L_random_028:794052-794219 -		CTCCACCCACTTCCACTTGTTTCGTTGAATCCTGCCACTCGGGTCGTTTCTCTCGACCACGCCCAGGAGAATGTGGTTTTTCGCGATCTCCGCAAAAGATCGCCCTG-------G-AGGTCGC---TTTTTGACCTCTATG--------------------GGCTTGGATGGCTTGGGGGCTTCCTTGCCGAACG-GTGC-----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CTCCACCAGATGCCACTTGTCCCGAGGGACATGGCCGTCCTTGGCGCCCCTGTCCAGGACGCCGATTAGGGTCTTGCCCCTCGCAA-CTCAGCGAACGATCGGTTCG-------T-GAAGTGG---GTT------TTCACCCGCTTGGCTTGCTGGGCT-CGGCCTGGCTGACTAGCGGGATCCTCCGCTGAGCA-TTGCCGCT-----------------TGTTGGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................TGTCCAGGACGCCGATTAGGGTCT...........................................................................................................................................................	24	3	3.33	10	0	7	0	0	0	3
........................................................................................................TCG-------T-GAAGTGG---GTT------TTCACCCGCT....................................................................................	24	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GCT-CGGCCTGGCTGACTAGCGG..................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................CT-CGGCCTGGCTGACTAGCGG..................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GCT-CGGCCTGGCTGACTAGCGGG.................................................	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................GGGCT-CGGCCTGGCTGACTAGCGG..................................................	24	1	1.00	1	0	1	0	0	0	0
.............CACTTGTCCCGAGGGACATGGCCG................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0
.............CACTTGTCCCGAGGGACATGGC..................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
.......................................................................................CTCAGCGAACGATCGGTTCG-------T-C................................................................................................................	22	6	0.17	1	0	0	0	1	0	0
................................................................................................................................T------TTCACCCGCTTGGCTTGCTGGGCT-.....................................................................	25	14	0.07	1	0	1	0	0	0	0
..........................................................................................................................................ACCCGCTTGGCTTGCTGGGCT-.....................................................................	21	20	0.05	1	0	1	0	0	0	0

dp5

CTCCACCAGATGACACTTGTCCCGAGGGACATGACCGTCCTCGGCGCCCCTGTCCAGGACGCCGGTTATGGTCTTTCCCTTCGCCATCTCAGCGAACGATCGGTTTG-------T-GAGGTGG---GTT------TTCATCCGCTTGGCTTGCTGGGCT-TGGCCTGGCTGACTAGCGGGATCCTCCGCTGAGCG-TTGCCGCT-----------------TGTTGGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................TGAGCG-TTGCCGCT-----------------TGTTGGGG	22	20	5.65	113	0	76	0	0	10	1	17	8	1	0
.......................................................................................................TTTG-------T-GAGGTGG---GTT------TTCATCCGC.....................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------TG......	24	20	2.85	57	0	57	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------TGT.....	25	20	2.40	48	0	47	0	0	0	0	1	0	0	0
.........................................................................................................................................................TGGGCT-TGGCCTGGCTGACTAGCGG..................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTGG.............................................................	22	20	2.00	40	0	40	0	0	0	0	0	0	0	0
.......................................................................................................TTTG-------T-GAGGTGG---GTT------TTCATCCGCTT...................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.TCCACCAGATGACACTTGTCCCGAGG..........................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGC..........................	21	20	1.55	31	0	31	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCGCT-----------------TG......	23	20	1.40	28	0	28	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGAGCG-TTGCCGCT-----------------TGTTGG..	20	20	1.30	26	0	21	0	0	0	0	0	3	2	0
.............................................................................................................................................................................................TGAGCG-TTGCCGCT-----------------TGTTGGG.	21	20	1.05	21	0	0	0	0	5	1	9	4	2	0
..CCACCAGATGACACTTGTCCCGAGGGA........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................CTGTCCAGGACGCCGGTTATGGT.............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TGTCCAGGACGCCGGTTATG...............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TGTCCAGGACGCCGGTTATGGTCTT..........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................TGTCCAGGACGCCGGTTATGGTCT...........................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TTTG-------T-GAGGTGG---GTT------TTCATCCGCT....................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGGGCT-TGGCCTGGCTGACTAGCGGG.................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTG..............................................................	21	20	1.00	20	0	19	1	0	0	0	0	0	0	0
.............CACTTGTCCCGAGGGACATGACCGTC..............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................CGCCGGTTATGGTCTTTCCCTTCGC.................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................TATGGTCTTTCCCTTCGCCATCTCAGCA.......................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TGACACTTGTCCCGAGGGACATGACCG................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................T-TGGCCTGGCTGACTAGCGGG.................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
....ACCAGATGACACTTGTCCCGAGGG.........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TCAGCGAACGATCGGTTTG-------T-GAGG.............................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TGACACTTGTCCCGAGGGACATA....................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TGACACTTGTCCCGAGGGACA......................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTGGC............................................................	23	20	0.70	14	0	14	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GAGCG-TTGCCGCT-----------------TGTTGGGG	21	20	0.65	13	0	13	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------T.......	23	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGCG-TTGCCGCT-----------------TGTTGGGG	20	20	0.50	10	0	10	0	0	0	0	0	0	0	0
........................................................................................................................................TCATCCGCTTGGCTTGCTGGA........................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCGCTGAGCG-TTGCCGCT-----------------TGTTG...	24	20	0.50	10	0	10	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCGCTGAGCG-TTGCCGCT-----------------TGT.....	22	20	0.40	8	0	8	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCGCTGAGCG-TTGCCGCT-----------------TG......	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
................................................................................................................................................TTGGCTTGCTGGGCT-TGGCCTGG.............................................................	23	20	0.40	8	0	7	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCG...........................	20	20	0.35	7	0	6	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................AGCG-TTGCCGCT-----------------TGTTGGG.	19	20	0.35	7	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................................................CTGGCTGACTAGCGGGATCCT............................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTGGCTTGCTGGGCT-TGG..................................................................	19	20	0.30	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCGCT-----------------TGT.....	24	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTGGCT...........................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCT...............................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CTGAGCG-TTGCCGCT-----------------TGTTGGGG	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
........................................TCGGCGCCCCTGTCCAGGACGA.......................................................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................GAGCG-TTGCCGCT-----------------TGTTGG..	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..........................................GGCGCCCCTGTCCAGGACG........................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................CGGCGCCCCTGTCCAGGACG........................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTCCGCTGAGCG-TTGCCGCT-----------------TG......	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
........................................TCGGCGCCCCTGTCCAGGACGT.......................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCGCTGAGCG-TTGCCGCT-----------------TGTTGG..	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCC................................................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................GGCTTGCTGGGCT-TGGCCTGGC............................................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................CGCCCCTGTCCAGGACGCC......................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........................................GCGCCCCTGTCCAGGACGCC......................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTGT.............................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................TGCTGGGCT-TGGCCTGGCTG..........................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTCCGCTGAGCG-TTGCCGCT-----------------TGT.....	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCGCTGAGCG-TTGCCGCT-----------------TG......	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTGGCTG..........................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCG...........................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCGCTGAGCG-TTGCCGCT-----------------TGT.....	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................GGCTTGCTGGGCT-TGGCCTGG.............................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................CTCGGCGCCCCTGTCCAGGA..........................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCGCTGAGCG-TTGCCGCT-----------------TGTTGGGG	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------TGC.....	25	20	0.10	2	0	1	0	0	1	0	0	0	0	0
................................................................................................................................................TTGGCTTGCTGGGCT-TGGCCTGGC............................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCC............................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................TTGGCTTGCTGGGCT-TGGCCTG..............................................................	22	20	0.10	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................CGCTTGGCTTGCTGGGCT-TGG..................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGAGCG-TTGCCGCT-----------------TGTTGGA.	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................TTGCTGGGCT-TGGCCTGGCTG..........................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................CCGCTTGGCTTGCTGGGCT-TG...................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGT..........................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------A.......	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................GGCTTGCTGGGCT-TGGCCTGGCTG..........................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................GCTTGGCTTGCTGGGCT-TGGCCTGG.............................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTGGCTTGCTGGGCT-TGGCCTGG.............................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GCTGAGCG-TTGCCGCT-----------------TGTTGGGG	24	20	0.10	2	0	1	0	0	1	0	0	0	0	0
.................................................................................................................................................TGGCTTGCTGGGCT-TGGCCTGGCTGA.........................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................GTCCTCGGCGCCCCTGTCC..............................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCGCT-----------------........	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................CTGAGCG-TTGCCGCT-----------------TGTTGG..	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................CGTCCTCGGCGCCCCTGTCCAG............................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGAGCG-TTGCCGCT-----------------TGTTGGT.	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.....................................TCCTCGGCGCCCCTGTCCAGGAC.........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................CGCTTGGCTTGCTGGGCT-TGT..................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................TCGGCGCCCCTGTCCAGGAC.........................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................CTTGGCTTGCTGGGCT-TG...................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------TGTTGG..	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCGCT-----------------T.......	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTGGCTTGCTGGGCT-TGGCCT...............................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCTGAGCG-TTGCCGCT-----------------TGTT....	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CCGCTTGGCTTGCTGGGCT-T....................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------TGTT....	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCGCA-----------------........	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................GCTTGGCTTGCTGGGCT-TGGCCTG..............................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................CGTCCTCGGCGCCCCTGT................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------........	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTCCGCTGAGCG-TTGCCGCT-----------------TGTTGA..	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................GGCTTGCTGGGCT-TGGCCTGT.............................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................TTGCTGGGCT-TGGCCTGTA............................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................CTCGGCGCCCCTGTCCAGG...........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCC-----------------........	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................TCGGCGCCCCTGTCCAGGA..........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................GCTTGCTGGGCT-TGGCCTGG.............................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................GCTTGGCTTGCTGGGCT-TGGC.................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCTCCGCTGAGCG-TTGCCGCT-----------------TGTT....	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CTGAGCG-TTGCCGCT-----------------TGTTGGT.	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................GAGCG-TTGCCGCT-----------------TGTTGGG.	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................TCCTCGGCGCCCCTGTCCAGG...........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTGGCTTGCTGGGCT-TGGCCTGGC............................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................CTGAGCG-TTGCCGCT-----------------TGTTGGG.	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................CCGTCCTCGGCGCCCCTGTC...............................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCCTCCGCTGAGCG-TTGCCGCT-----------------TT......	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTCCGCTGAGCG-TTGCCGCT-----------------T.......	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCGCTGAGCG-TTGCCGCT-----------------TGTT....	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droMoj3

TTCGATCCATTTCCAATATCGTCTCGGAATTCTGCCTTCAGCGTGGCCCCGGTCAAATACGCCGATTAGTATGCTATCCTTGGTCATCTCAAAGAGGGATTTGGTTG--------------------GCGGCAG---------CTTGGCATGCT---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TC-CACCCATTTCCACTGATTTCTAGGGATTCTGCCATCCTTGCTTCCCTTGTCAAGTATCCCTATAAGGATTCTTTCCTTGGCAATGTCAGCAAAGGACATTCCCT--------------------GTTGCACCTTGGCCCGTTTTGCGACGGGACCG-------------------TGTGCTTCCTGTGAGCG-CCGCCTTTTA----------------------G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

CACCACCTTCCGCCAAAGCTCTAGGGGGATCAGGCTATCTTTGGAGCCATTATCAACGACCCCAATGATGGTCCTGCCCTTAGTAACTTCGGCGAAGGATCTGTTAC-------T-TTGCTGT---GTCTGCACCTTCTTCTTCTTAGCTGGGGGCGCT-------------------TCACCGTCGGTCGACCTATTTCAGCC-----------------TGATCGGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTT............................................................................................	25	20	3.25	65	44	21	0	0	0	0
.....................................TCTTTGGAGCCATTATCAACGACCC.......................................................................................................................................................................	25	20	2.20	44	22	22	0	0	0	0
....................................ATCTTTGGAGCCATTATCAACGACCC.......................................................................................................................................................................	26	20	1.75	35	35	0	0	0	0	0
...................................................................................................TCTGTTAC-------T-TTGCTGT---GTCTGCACC..............................................................................................	25	20	1.60	32	0	32	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACC..............................................................................................	23	20	1.50	30	7	23	0	0	0	0
...................................................................................TAACTTCGGCGAAGGATCTGTTAC-------T-.................................................................................................................	25	20	1.45	29	0	29	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTCT..........................................................................................	27	20	1.40	28	28	0	0	0	0	0
...................................................................................TAACTTCGGCGAAGGATCTGTTAC-------T-T................................................................................................................	26	20	1.25	25	22	3	0	0	0	0
....................................ATCTTTGGAGCCATTATCAACGACCCC......................................................................................................................................................................	27	20	1.20	24	21	3	0	0	0	0
..............................................................................................................................................TCTTAGCTGGGGGCGCT-------------------TCACCGT............................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................GATCTGTTAC-------T-TTGCTGT---GTCTGCACC..............................................................................................	27	20	1.00	20	7	13	0	0	0	0
CACCACCTTCCGCCAAAGCTCTAGGGG..........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................TCTTTGGAGCCATTATCAACGACCCCAA....................................................................................................................................................................	28	20	0.95	19	19	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCT.............................................................................................	24	20	0.95	19	19	0	0	0	0	0
.................................................................TGATGGTCCTGCCCTTAGTAACTTCGGC........................................................................................................................................	28	20	0.85	17	17	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTCTTC........................................................................................	29	20	0.75	15	14	1	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTC...........................................................................................	26	20	0.60	12	0	12	0	0	0	0
........................................................................................................TAC-------T-TTGCTGT---GTCTGCACCTTCTTCT.......................................................................................	27	20	0.60	12	12	0	0	0	0	0
................................................................................................GGATCTGTTAC-------T-TTGCTGT---GTCTGCACC..............................................................................................	28	20	0.55	11	0	11	0	0	0	0
..................................................................GATGGTCCTGCCCTTAGTAACTTCGGC........................................................................................................................................	27	20	0.50	10	7	3	0	0	0	0
...................................................................................................TCTGTTAC-------T-TTGCTGT---GTCTGCACCT.............................................................................................	26	20	0.50	10	4	6	0	0	0	0
.....................................TCTTTGGAGCCATTATCAACGACC........................................................................................................................................................................	24	20	0.50	10	0	10	0	0	0	0
.ACCACCTTCCGCCAAAGCTCTA..............................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................GTCTGCACCTTCTTCTTCTTAGCTGG.............................................................................	26	2	0.50	1	0	1	0	0	0	0
........................................................................................................TAC-------T-TTGCTGT---GTCTGCACCTTCTTC........................................................................................	26	20	0.45	9	8	1	0	0	0	0
.................................................................TGATGGTCCTGCCCTTAGTAACTTCG..........................................................................................................................................	26	20	0.45	9	9	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCC.............................................................................................	24	20	0.45	9	0	9	0	0	0	0
....................................................................TGGTCCTGCCCTTAGTAACTTCGGC........................................................................................................................................	25	20	0.40	8	4	4	0	0	0	0
....................................................................................AACTTCGGCGAAGGATCTGTTAC-------T-.................................................................................................................	24	20	0.30	6	3	3	0	0	0	0
....................................ATCTTTGGAGCCATTATCAACGACC........................................................................................................................................................................	25	20	0.30	6	6	0	0	0	0	0
....................................................................................AACTTCGGCGAAGGATCTGTTAC-------T-T................................................................................................................	25	20	0.30	6	6	0	0	0	0	0
....................................................................................................CTGTTAC-------T-TTGCTGT---GTCTGCACCT.............................................................................................	25	20	0.25	5	4	1	0	0	0	0
........................................................................................................................TGT---GTCTGCACCTTCTTCTTCTTAGC................................................................................	26	20	0.25	5	3	2	0	0	0	0
...............................................................AATGATGGTCCTGCCCTTAGTAACT.............................................................................................................................................	25	20	0.25	5	4	1	0	0	0	0
...................................................................................TAACTTCGGCGAAGGATCTGTTAC-------...................................................................................................................	24	20	0.20	4	0	4	0	0	0	0
....................................ATCTTTGGAGCCATTATCAACGACCCCA.....................................................................................................................................................................	28	20	0.20	4	4	0	0	0	0	0
....................................................................................................CTGTTAC-------T-TTGCTGT---GTCTGCACCTTC...........................................................................................	27	20	0.20	4	4	0	0	0	0	0
......................................CTTTGGAGCCATTATCAACGACCCC......................................................................................................................................................................	25	20	0.20	4	4	0	0	0	0	0
....................................ATCTTTGGAGCCATTATCAACGACCCCAA....................................................................................................................................................................	29	20	0.20	4	4	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTCTT.........................................................................................	28	20	0.20	4	3	1	0	0	0	0
..................................................................................................................T-TTGCTGT---GTCTGCACCTTCTTCTTCT....................................................................................	27	20	0.20	4	4	0	0	0	0	0
....................................................................................................CTGTTAC-------T-TTGCTGT---GTCTGCACCTT............................................................................................	26	20	0.20	4	4	0	0	0	0	0
...........................................................CCCCAATGATGGTCCTGCCCTTAGT.................................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
..............................................................CAATGATGGTCCTGCCCTTAGTAAC..............................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
...................................................................................TAACTTCGGCGAAGGATCTGTTAC-------T-TT...............................................................................................................	27	20	0.15	3	2	0	1	0	0	0
..............................................................................................AAGGATCTGTTAC-------T-TTGCTGT---GTCT...................................................................................................	25	20	0.15	3	2	1	0	0	0	0
.....................................................................................................................TGCTGT---GTCTGCACCTTCTTCTTCT....................................................................................	25	20	0.15	3	3	0	0	0	0	0
....................................................................TGGTCCTGCCCTTAGTAACTTCGG.........................................................................................................................................	24	20	0.15	3	2	1	0	0	0	0
..................................................TATCAACGACCCCAATGATGGTCCTGC........................................................................................................................................................	27	20	0.15	3	3	0	0	0	0	0
.................................................................................................GATCTGTTAC-------T-TTGCTGT---GTCTGCAC...............................................................................................	26	20	0.15	3	1	2	0	0	0	0
..........................................................................................................................T---GTCTGCACCTTCTTCTTCTTAGCT...............................................................................	25	20	0.15	3	2	1	0	0	0	0
..............................................................CAATGATGGTCCTGCCCTTAGTAACT.............................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.............................................................CCAATGATGGTCCTGCCCTTAGTAACT.............................................................................................................................................	27	20	0.15	3	1	2	0	0	0	0
....................................................................................AACTTCGGCGAAGGATCTGTTAC-------T-TTGC.............................................................................................................	28	19	0.11	2	2	0	0	0	0	0
..................................................TATCAACGACCCCAATGATGGTCCTG.........................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.......................................................................................................TTAC-------T-TTGCTGT---GTCTGCACCTTCTTC........................................................................................	27	20	0.10	2	2	0	0	0	0	0
..............................................................................CTTAGTAACTTCGGCGAAGGATCTG..............................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..............................................................................CTTAGTAACTTCGGCGAAGGATCTGT.............................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.........................................................................................................AC-------T-TTGCTGT---GTCTGCACCTTCTTC........................................................................................	25	20	0.10	2	2	0	0	0	0	0
.................................................................................................GATCTGTTAC-------T-TTGCTGT---GTCTGCACCT.............................................................................................	28	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................TGCTGT---GTCTGCACCTTCTTCTTC.....................................................................................	24	20	0.10	2	2	0	0	0	0	0
................................................................................................GGATCTGTTAC-------T-TTGCTGT---GTCTG..................................................................................................	24	20	0.10	2	2	0	0	0	0	0
..............................................................CAATGATGGTCCTGCCCTTAGTAACTTC...........................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
...................................................................................TAACTTCGGCGAAGGATCTGTTAC-------T-TTG..............................................................................................................	28	20	0.10	2	2	0	0	0	0	0
.......................................................................................................TTAC-------T-TTGCTGT---GTCTGCACCTTCT..........................................................................................	25	20	0.10	2	0	2	0	0	0	0
................................................................ATGATGGTCCTGCCCTTAGTAACTTC...........................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
............................................................CCCAATGATGGTCCTGCCCTTAGTAACT.............................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
....................................................................................................................TTGCTGT---GTCTGCACCTTCTTCTTCT....................................................................................	26	20	0.10	2	2	0	0	0	0	0
.......................................................................................TTCGGCGAAGGATCTGTTAC-------T-TTG..............................................................................................................	24	20	0.10	2	2	0	0	0	0	0
..........................................................................TGCCCTTAGTAACTTCGGCGAAGGATC................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
...................................................................................................TCTGTTAC-------T-TTGCTGT---GTCTGCACCTT............................................................................................	27	20	0.10	2	2	0	0	0	0	0
......................................................................................................GTTAC-------T-TTGCTGT---GTCTGCACCTTCT..........................................................................................	26	20	0.10	2	2	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGC.................................................................................................	20	20	0.10	2	2	0	0	0	0	0
............................................................CCCAATGATGGTCCTGCCCTTAGTAACTT............................................................................................................................................	29	20	0.10	2	2	0	0	0	0	0
...................................................................................................TCTGTTAC-------T-TTGCTGT---GTCTGCAC...............................................................................................	24	20	0.10	2	2	0	0	0	0	0
..................................................................GATGGTCCTGCCCTTAGTAACTTCGG.........................................................................................................................................	26	20	0.10	2	1	1	0	0	0	0
.........................................................................................................AC-------T-TTGCTGT---GTCTGCACCTTCTTCT.......................................................................................	26	20	0.10	2	2	0	0	0	0	0
................................................................................TAGTAACTTCGGCGAAGGATCTGTT............................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................ATCAACGACCCCAATGATGGTCCTGCCCT.....................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
......................................................................................................................GCTGT---GTCTGCACCTTCTTCT.......................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................CTTAGTAACTTCGGCGAAGGATC................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................TTAC-------T-TTGCTGT---GTCTGCACCTTC...........................................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................................................................................T-TTGCTGT---GTCTGCACCTTCTTCTTC.....................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................CTGTTAC-------T-TTGCTGT---GTCTGCAC...............................................................................................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................GTAACTTCGGCGAAGGATCTGTTAC-------T-T................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................CATTATCAACGACCCCAATGAT................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................TCTGTTAC-------T-TTGCTGT---GTCTGCACCC.............................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................TGCTGT---GTCTGCACCTTCTTC........................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTG...........................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................TCAACGACCCCAATGATGGTCCTGC........................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................T-TTGCTGT---GTCTGCACCTTCT..........................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................TTCGGCGAAGGATCTGTTAC-------T-TTGC.............................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................ATCAACGACCCCAATGATGGTCCTGC........................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
......................................................................................................................GCTGT---GTCTGCACCTTCTTCTTCT....................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................CAATGATGGTCCTGCCCTTAGTAACTT............................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..........................................GGAGCCATTATCAACGACCCCAATGAT................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
....................................................................TGGTCCTGCCCTTAGTAACTTCGT.........................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...............................................CATTATCAACGACCCCAATGATGGTC............................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................CCCCAATGATGGTCCTGCCCTTAGTAACT.............................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
..................................................TATCAACGACCCCAATGATGGTCCTGCCC......................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
.............................................................................................GAAGGATCTGTTAC-------T-TTGCTGT---GT.....................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......................................................ACGACCCCAATGATGGTCCTGCCC......................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................ACTTCGGCGAAGGATCTGTTAC-------T-TTGC.............................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..........................................................................TGCCCTTAGTAACTTCGGCGAAGGATCT...............................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................TGCTGT---GTCTGCACCTTCTTCTT......................................................................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................................CGAAGGATCTGTTAC-------T-TTGCTGT---G......................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................TCGGCGAAGGATCTGTTAC-------T-T................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................TGGTCCTGCCCTTAGTAACTTCGGCG.......................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................................GATGGTCCTGCCCTTAGTAACTTCG..........................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................ATCAACGACCCCAATGATGGTCCTGCCC......................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.....................................TCTTTGGAGCCATTATCAACGACCCCAAT...................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
....................................................................................................................TTGCTGT---GTCTGCACCTTCTTCT.......................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................C-------T-TTGCTGT---GTCTGCACCTTCTTCT.......................................................................................	25	20	0.05	1	1	0	0	0	0	0
CACCACCTTCCGCCAAAGCTC................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................T-TTGCTGT---GTCTGCACCTTCTTC........................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................................................TTATCAACGACCCCAATGATGGTCCC..........................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................GTTAC-------T-TTGCTGT---GTCTGCACCTTT...........................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................................................TGGTCCTGCCCTTAGTAACTTCGGCGAA.....................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.............................................................................................GAAGGATCTGTTAC-------T-TTGCTGT---GTCTC..................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.....................................................................GGTCCTGCCCTTAGTAACTTCGGC........................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................TGCCCTTAGTAACTTCGGCGAAGG...................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.........................................................GACCCCAATGATGGTCCTGCCCTTA...................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................TGATGGTCCTGCCCTTAGTAACTTC...........................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................................TCAACGACCCCAATGATGGTCCTGCCC......................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.................................................................TGATGGTCCTGCCCTTAGTAACTT............................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTTG..........................................................................................	27	20	0.05	1	1	0	0	0	0	0
......................................................................................................GTTAC-------T-TTGCTGT---GTCTGCACCT.............................................................................................	23	20	0.05	1	1	0	0	0	0	0
................................................................ATGATGGTCCTGCCCTTAGTAACTTCGGC........................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
..................................................TATCAACGACCCCAATGATGGTCCTGCC.......................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................CTGT---GTCTGCACCTTCTTCTT......................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................TAC-------T-TTGCTGT---GTCTGCACCTTC...........................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................TGCTGT---GTCTGCACCTTCTTCTTCTTAGC................................................................................	29	20	0.05	1	1	0	0	0	0	0
..............................................................................CTTAGTAACTTCGGCGAAGGATCT...............................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...............................................................AATGATGGTCCTGCCCTTAGTAACTT............................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..........................................................................TGCCCTTAGTAACTTCGGCGAAGGA..................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................ATCTTTGGAGCCATTATCAACGAC.........................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......................................................................TCCTGCCCTTAGTAACTTCGGCGAAG....................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
................................................ATTATCAACGACCCCAATGATGGTCCTGC........................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.....................................................................................................TGTTAC-------T-TTGCTGT---GTCTGCACCTTCA..........................................................................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................CCCTTAGTAACTTCGGCGAAGGATCTGT.............................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..................................................................................................................T-TTGCTGT---GTCTGCACCTTCTTCT.......................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................TGCTGT---GTCTGCACCTTCTTCTTCTT...................................................................................	26	20	0.05	1	1	0	0	0	0	0
...............................................................................................AGGATCTGTTAC-------T-TTGCTGT---GTCTGCA................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..................................................................................................ATCTGTTAC-------T-TTGCTGT---GTCTGCACC..............................................................................................	26	20	0.05	1	0	1	0	0	0	0
...............................................................................TTAGTAACTTCGGCGAAGGAC.................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................TGATGGTCCTGCCCTTAGTAACTTCGG.........................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................AGGATCTGTTAC-------T-TTGCTGT---GTCTGCACC..............................................................................................	29	20	0.05	1	1	0	0	0	0	0
...............................................................AATGATGGTCCTGCCCTTAGTAACTTCG..........................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0

droBip1

TACCACTCGTCGCCAAATGTCCTTGGGGATTAGCCCATCCTTGGAGCCCTTGTTCAGGACTCCAATTAGGGTTCTTCCCTTCGTCACTTCGGCGAACTTGCGGTTGG-------A-CGGCTGC---GCTTGGGCCTTCCTCTTCTCAGCCTGGGGGCCT-------------------TCGTCCTCCGTGGACCT-CTGCCTTTT------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCTGACCAGGCCCCATTGATTTCTGTGTCTCCGACCGCTTTCCTCTTTGCGCTGGAAGACCCCGATGATCTTCCTGTCCTTCACCACCTCCGCGAAGGATTCCGACTATGTTCCTCGGTTGGTGAT---------TCTGGCCTTTTTGCTGGCTGGTTGT------------------GCCACCTCCATCGACCG-CTACCGTTTATTACCA------------ACAGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTCAACCGCCTTCCATTTGTTTCTGGGGATCCTGCTCTCCGGATTTCCCCTATCTATGAGTCCAAGTAGGACCCGATCTTTGGTGATCTCGGCAAAGGAGACCGACG--------------------GCTGGATCTTCGATCTCTTCGCCGACGGGCCG-------------------GGCAGCTCTATGGAGCG-TTGCCTCTTCGCCTGAGCACCTTCTTGTTGGGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCTAACCTGACCCCACTGGTTCCTCGGGATCCTGCCGCCTTCATCGTTCTGGTCGATGACGCCGATGATCTTCCGATCCT--ACCACTTCGGCAAAGGATCTAGACCACGTGCCGCGGCTGGTTGT---------CTTGGCCTTCTTGCTCGCTGGTTGA------------------GCCACTTCGATCGACCT-CTCCCGCTTGTTGCTG-------TCGCTTGGTG	Size	Hit Count	Total Norm	Total
No Reads

droYak3

CTCCACCCACTTCCACTTGTTTCGTTGAATCCTGCCACTCGGGTCGTTTCTCTCGACCACGCCCAGGAGAATGTGGTTTTTCGCGATCTCCGCAAAAGATCGCCCTG-------G-AGGTCGC---TTTTTGACCTCTATG--------------------GGCTTGGATGGCTTGGGGGCTTCCTTGCCGAACG-GTGC-----------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................CAGGAGAATGTGGTTTTTCGCGATC.............................................................................................................................................	25	2	46.00	92	0	0	0	0	0	0	0	0	0	0	92
................TTGTTTCGTTGAATCCTGCCACTCGG...........................................................................................................................................................................................	26	3	9.00	27	0	21	2	0	0	0	0	0	0	0	4
................TTGTTTCGTTGAATCCTGCCACTCG............................................................................................................................................................................................	25	3	7.00	21	0	21	0	0	0	0	0	0	0	0	0
................TTGTTTCGTTGAATCCTGCCACTCGGG..........................................................................................................................................................................................	27	2	3.50	7	1	6	0	0	0	0	0	0	0	0	0
................TTGTTTCGTTGAATCCTGCCACTC.............................................................................................................................................................................................	24	3	1.33	4	0	3	1	0	0	0	0	0	0	0	0
.........................................................................................................TG-------G-AGGTCGC---TTTTTGACCTCTATG--------------------GGC.................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TCGTTTCTCTCGACCACGCCCAGGAG................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.................TGTTTCGTTGAATCCTGCCACTCGG...........................................................................................................................................................................................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0	0
.........CTTCCACTTGTTTCGTTGAATCCTGC..................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................TTCTCTCGACCACGCCCAGGAGAATG............................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................TGAATCCTGCCACTCGGGTCGTTTC...................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TGTTTCGTTGAATCCTGCCACTCG............................................................................................................................................................................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0	0
................TTGTTTCGTTGAATCCTGCCACT..............................................................................................................................................................................................	23	3	1.00	3	2	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TCTATG--------------------GGCTTGGATGGCTTGGGGGC................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TGTTTCGTTGAATCCTGCCACTCGGG..........................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
................TTGTTTCGTTGAATCCTGCCACTCGGGTC........................................................................................................................................................................................	29	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...................TTTCGTTGAATCCTGCCACTCGGGTC........................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................CAGGAGAATGTGGTTTTTCGCGATCTC...........................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................TGTTTCGTTGAATCCTGCCACTC.............................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........................GAATCCTGCCACTCGGGTCGTTTCT..................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0

dpe_287

scaffold_110:61011-61102 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.5	-41.6