ID:

dpe_282

 Coordinate:

scaffold_2474:465-518 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.4 -35.2 -35.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_768:6286-6307 +
  2. scaffold_169:4224-4245 -
  3. scaffold_169:9184-9205 -
  4. scaffold_446:1504-1525 -
  5. scaffold_443:2639-2660 -
  6. scaffold_371:17791-17812 +
  7. scaffold_1190:900-921 -
  8. scaffold_49:524258-524279 -
  9. scaffold_955:7120-7141 -
  10. scaffold_868:13223-13244 +
  11. scaffold_1176:1305-1326 -
  12. scaffold_1615:1330-1351 +
  13. scaffold_2149:539-560 +
  14. scaffold_5085:60-81 +
  15. scaffold_336:707-728 -
  16. scaffold_1517:5329-5350 +
  17. dpe_282  scaffold_2474:465-486 +
  18. scaffold_640:6980-7001 -
  19. scaffold_8365:452-473 -
  20. scaffold_9636:424-445 -
  21. scaffold_0:11799191-11799212 +
  22. scaffold_3313:2140-2161 +
star

Sense Strand Reads

GCATGGCTGCCTTGTAGGCGATGCAGCCCTTGTAGGCGCTGATTTGGGCGCCCTGGCAGTTGGCGCATTTGGGAGCGACGCTCCTCGGCTTGCTGCAGGTGTCGTCGTCGTCAGGTGCCCACCCGCGCCTACAGTATGCGCGGGTACGGCAAAA
***********************************((((((((...((((.(((.(((((.(((......((((((...))))))..))).))))))))...))))...))))).))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 V057
head
 V111
male body		 M021
embryo
..................................................CCCTGGCAGTTGGCGCATTTGG.................................................................................. 22 0 20 11.05 221 211 7 0 0 3
..................................................CCCTGGCAGTTGGCGCATTTGGGAG............................................................................... 25 0 12 5.33 64 64 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGA................................................................................ 24 0 20 3.60 72 71 1 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTG................................................................................... 21 0 20 3.45 69 66 1 0 0 2
..................................................CCCTGGCAGTTGGCGCATTTGGG................................................................................. 23 0 20 2.25 45 45 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGCGA............................................................................ 25 0 5 2.20 11 9 0 0 2 0
.....................................................TGGCAGTTGGCGCATTTGGGAG............................................................................... 22 0 12 1.25 15 11 2 0 2 0
..................................................CCCTGGCAGTTGGCGCATTTGGGAGC.............................................................................. 26 0 12 1.00 12 12 0 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGG.................................................................................. 21 0 20 0.80 16 16 0 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGGGA................................................................................ 23 0 20 0.55 11 11 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGC.............................................................................. 23 0 12 0.50 6 5 1 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGGGAG............................................................................... 24 0 12 0.42 5 5 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTT.................................................................................... 20 0 20 0.40 8 8 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGAGCGA............................................................................ 28 0 5 0.40 2 2 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGCGAA........................................................................... 26 1 5 0.40 2 2 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGG........................................................................................... 19 0 16 0.25 4 3 1 0 0 0
..............................................................GCGCTTTTGAGAGCGACGC......................................................................... 19 2 4 0.25 1 0 0 1 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGCG............................................................................. 24 0 12 0.25 3 3 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGT................................................................................ 24 1 20 0.25 5 5 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGAA............................................................................... 25 1 20 0.25 5 5 0 0 0 0
.....................................................TGGCAGTTAGCGCATTTGGGAGCGA............................................................................ 25 1 5 0.20 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGA................................................................................ 21 0 20 0.20 4 3 1 0 0 0
.......................................................GCAGTTGGCGCATTTGGGAGCGAC........................................................................... 24 0 5 0.20 1 1 0 0 0 0
......................................................GGCAGTTGGCGCATTTGGGAGCGACG.......................................................................... 26 0 5 0.20 1 1 0 0 0 0
...........................................................TTGGCGCATTTGGGAGCGACG.......................................................................... 21 0 5 0.20 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGCGAC........................................................................... 26 0 5 0.20 1 1 0 0 0 0
..........................................................................GCAAAGCTCCTCGGCTTGC............................................................. 19 2 6 0.17 1 0 0 1 0 0
............................................................TGGCGCATTTGGGAGCGACGA......................................................................... 21 1 6 0.17 1 1 0 0 0 0
......................................................GTCAGTTGGCGCATTTGGGAGCGAC........................................................................... 25 1 6 0.17 1 1 0 0 0 0
............................................................................AACGCTCCTCGGCTCGCTG........................................................... 19 2 6 0.17 1 0 0 1 0 0
..................................................CCCTGGCAGTTGGCGCCTTTGG.................................................................................. 22 1 20 0.15 3 0 3 0 0 0
...................................................CCTGGCAGTTGGCGCATTTG................................................................................... 20 0 20 0.15 3 3 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTAGGAG............................................................................... 25 1 20 0.15 3 3 0 0 0 0
..................................................CCCTGGCACTTGGCGCATTTGG.................................................................................. 22 1 20 0.15 3 3 0 0 0 0
..........................................................................................TGCTGCAGGTGCCGTCGCCGT........................................... 21 2 7 0.14 1 1 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGGCGCATTTG................................................................................... 27 0 7 0.14 1 1 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGGC.......................................................................................... 20 0 15 0.13 2 2 0 0 0 0
............................................TGGGCGCCCTGGCAGTTG............................................................................................ 18 0 16 0.13 2 2 0 0 0 0
..................................................GCCTGGCAGTTGGCGCATTTGG.................................................................................. 22 1 20 0.10 2 2 0 0 0 0
.................................................CCCCTGGCAGTTGGCGCATTTGG.................................................................................. 23 1 20 0.10 2 2 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGAAA............................................................................... 25 2 20 0.10 2 2 0 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGGG................................................................................. 22 0 20 0.10 2 2 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGAC............................................................................... 25 1 20 0.10 2 2 0 0 0 0
.................................................CCCCTGGCAGTTGGCGCATTTGGGAG............................................................................... 26 1 12 0.08 1 1 0 0 0 0
.............GGAGGCGATGAAGCCCTTCT......................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGAGCG............................................................................. 27 0 12 0.08 1 1 0 0 0 0
..................................................GCCTGGCAGTTGGCGCATTTGGGAG............................................................................... 25 1 12 0.08 1 1 0 0 0 0
....................................................CTGGCAGTGGGCGCATTTGGGAGCG............................................................................. 25 1 12 0.08 1 1 0 0 0 0
....................................................CTGGCAGTTGGCGCATTTGGGAGA.............................................................................. 24 1 12 0.08 1 1 0 0 0 0
..................................................CCCTGGCATTTGGCGCATTTGGGAG............................................................................... 25 1 12 0.08 1 1 0 0 0 0
....................................................CTGGCAGTTGGCGCATTTGGGAG............................................................................... 23 0 12 0.08 1 1 0 0 0 0
......................................................GGCAGTTGGCGCATTTGGGAGCGTT........................................................................... 25 2 12 0.08 1 1 0 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGGGAGC.............................................................................. 25 0 12 0.08 1 1 0 0 0 0
..................................................CCCTGGCAGCTGGCGCATTTGGGAG............................................................................... 25 1 12 0.08 1 1 0 0 0 0
......................................................GGCAGTTGGCGCATTTGGGAGCGT............................................................................ 24 1 12 0.08 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGAGA.............................................................................. 26 1 12 0.08 1 1 0 0 0 0
..................................................CCCTGGCAATTGGCGCATTTGGGAG............................................................................... 25 1 13 0.08 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGTG............................................................................... 25 1 13 0.08 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGCGAG............................................................................... 22 1 13 0.08 1 1 0 0 0 0
......................................................GGCAGTTGGCGCATTTGGGAGC.............................................................................. 22 0 13 0.08 1 1 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGGCT......................................................................................... 21 1 15 0.07 1 1 0 0 0 0
.............................................GGGCGCCCTGGCAGTTGGCGCA....................................................................................... 22 0 15 0.07 1 1 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGGCGCA....................................................................................... 23 0 15 0.07 1 1 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGGCG......................................................................................... 21 0 15 0.07 1 1 0 0 0 0
............................................TGGGCGCCCTGGCAGTTGGCGCATT..................................................................................... 25 0 15 0.07 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGTG............................................................................. 24 1 17 0.06 1 1 0 0 0 0
.......................................................GCAGTTGGCGCATTTGGGA................................................................................ 19 0 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGTA............................................................................... 25 2 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTA.................................................................................... 20 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCCTTTGGG................................................................................. 23 1 20 0.05 1 0 1 0 0 0
.................................................GCCCTGGCAGTTGGCGCATTTGGGA................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAA............................................................................... 22 1 20 0.05 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGG.................................................................................. 19 0 20 0.05 1 0 1 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGGG................................................................................ 24 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCATTTGGCGCATTTGGGA................................................................................ 24 1 20 0.05 1 1 0 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGGGT................................................................................ 23 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTAGG.................................................................................. 22 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCACTTGGCGCATTTGGG................................................................................. 23 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGT................................................................................. 23 1 20 0.05 1 1 0 0 0 0
...............................................GGGCCCTGGCAGTTGGCGCATTTGG.................................................................................. 25 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGAT................................................................................ 24 2 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGTA................................................................................ 24 1 20 0.05 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGG................................................................................. 20 0 20 0.05 1 0 1 0 0 0
....................................................CTGGCAGTTGGCGCATTTGGTT................................................................................ 22 2 20 0.05 1 1 0 0 0 0
.................................................TCCCTGGCAGTTGGCGCATTTGG.................................................................................. 23 1 20 0.05 1 1 0 0 0 0
...................................................CCTGGCAGGTGGCGCATTTGG.................................................................................. 21 1 20 0.05 1 1 0 0 0 0
...................................................CCTGGCAGTTGGCGCATTTGGA................................................................................. 22 1 20 0.05 1 1 0 0 0 0
............TGTAGGCCGTGCAGCCCTTGTA........................................................................................................................ 22 2 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCACTTGGCGCATTTGTGA................................................................................ 24 2 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCAT...................................................................................... 18 0 20 0.05 1 1 0 0 0 0
.....................................................TGGCAGTTGGCGCATTTGGGAGT.............................................................................. 23 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCATTTGGCGCATTTGGGAA............................................................................... 25 2 20 0.05 1 1 0 0 0 0
...................................................CCTGGCAGTTGTCGCATTTGG.................................................................................. 21 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCACTTGGCGCATTTGGGA................................................................................ 24 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTTGGA................................................................................. 23 1 20 0.05 1 1 0 0 0 0
..................................................CCCTGGCAGTTGGCGCATTCGG.................................................................................. 22 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CGTACCGACGGAACATCCGCTACGTCGGGAACATCCGCGACTAAACCCGCGGGACCGTCAACCGCGTAAACCCTCGCTGCGAGGAGCCGAACGACGTCCACAGCAGCAGCAGTCCACGGGTGGGCGCGGATGTCATACGCGCCCATGCCGTTTT
***********************************((((((((...((((.(((.(((((.(((......((((((...))))))..))).))))))))...))))...))))).))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
...........................................AACCCGCGGGACCGTCAACCGCGTAAAC................................................................................... 28 0 1 1.00 1 1 0
..............................................CCGCGGGACCGTCAACCGCGTAAACCCT................................................................................ 28 0 7 0.43 3 3 0
..............................................CCGCGGGACCGTCAACCGCGTAAACC.................................................................................. 26 0 7 0.14 1 1 0
..........................................................................................................CAGCAGTCCACGGGTGGGCG............................ 20 0 16 0.06 1 1 0
..........................................................................................................CAGCAGTCCACGGGTGGGCGC........................... 21 0 16 0.06 1 1 0
............................................................................................................GCAGTCCACGGGTGGGCG............................ 18 0 18 0.06 1 1 0
............................................................................................................GCAGTCTACGGGTGGGCG............................ 18 1 18 0.06 1 1 0
.......................................................CGTCAACCGCGTAAACCC................................................................................. 18 0 20 0.05 1 0 1
.................................................CGGGACCGTCAACCGCGTAAACCCT................................................................................ 25 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2474:415-568 + dpe_282 GCATGGC-TGCCTTGTA------GGCGATGCAGC--CCTTGTAGGCGCTGATT-------TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-ACGCTCCTCGGCTTGCTGCAGGTGTCG---TCGTCGTCAGGTGCCC------ACCCGC-----------------------GCCT--ACAG------------------TATGCGCGGGTACGGCAAAA
dp5 Unknown_group_318:12860-13002 - CCCGATA-C---TCANA----ATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGT---------------AACGTGCAGAAGGAATCGTTTCCGACCCCATAAAGTATACATAAG-------------------------------------------------------------------GAATGT------GCC--------------G----------------------------AAAAGAA-ACTGCACACTTTG-TTTTTCTTA
droWil2 scf2_1100000004943:1734635-1734764 - CCATACA-C---TCATA------GAGTGAAATGGTATATTAAAGTCGCCAAAA-------TGTATGT---------------AACAGGCAGAAGGAATCTTTTCCTACCCCATAAAGTATATATATTCTTGATCGCGCAATTTAA-----------------------------------------------------------------------------------------------------------AAAAGGC-G-------------TTTATCGCA
droVir3 scaffold_12875:12676546-12676717 - CCCTGAA-C---CCATTAAAAATGAGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGT---------------AACAGACAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTGGATCAGCATCAATAGCCGAGTCGA------------TCTTCTTA-----------------AAACTTTTTTA----TT---------------------------------------------TTTATC-A-------------TTCATTTTA
droMoj3 scaffold_6680:22560922-22561065 - ATTGAAA-A---TGGGA------A---ATCAGGGTATAATGGTTTTGTAAAAA-------AGTATGT---------------AAGGGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGCACGACGAGCTGAATCGA------------------------------------------------------------TTTC---ATA---------------------------CTAGAGAT-T-------------TATGCTTTG
droGri2 scaffold_273:21-193 + GCCCGAGCCTCCTTATA------TTTAGGGCAAC--CTTTGTAGCAGGACACA-------TGGCTGC---------------CTTC-GCAATT-GGC-------------------------GCACTT---AGGAT---------------TG-GCGATCCTCGTCGCGCTGCAGG--------CCGTGGAAGGATGCGC------TCCCGCACACTTCATGCAGATAAAAGGGCGGCG--GCAG------------------TAATTTTTTGTGTGTCCAAA
droAna3 scaffold_3884:3960-4127 + TGCCTTT-----TGGTA------GGCTGGACAGCC--TTTATAAGCGCTGATG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGGCTTGGAGCAAG--------CCGATGTTAGGTGGTT------TTCAGCGCATTTGAGGCAACGAGGACCGCGCCT--ACAC------------------TCATTCTTCCCATGGCCGAA
droBip1 scf7180000396426:292341-292496 - CCCGGTA-C---TCGGA------GAGTAAAAGAGTACATTGTATTCGCGTGAA-------TGTGTGT---------------AACATAGAGAAGGATACATCTCCGACCCCTTGAGGTATATACAGG----GTGACAATAAATAACCCGGACAA---------------------------------------ACATTTTTG----ATCATAACTTT----------------------------------TTAAGGAA-C-------------TGTATTTGA
droKik1 scf7180000302441:2843248-2843401 + ATATGGC-T---CCGTG------GG-CAGGCAAC--TCCTGGACT--TCAGGC-------AGTCCGTCACCCAATCCGGCGTCACT-ATGATA-ATG-------------------------GCATTCTTGGGCAGCGCCA--------------------GCGCCTTGTTGTAGATGCCACCG------TTAGCCGCC---------CCGCAT---------------------------ACCA------------------GATGCGTGTTTGTGGCCCCA
droFic1 scf7180000454065:764872-765014 - CCCGTTT-T---TCGTA------GAGTAAACGGGTCTACTGCATTTGTGGAAA-------AGTATGT---------------AACAGATCGAAGGAAGCCTTTGTGACCCCATAAAGTATATAGATTCTTTATTAGGAATATCAGATGAAT---------------------------------------------------------------TTTA---ATC---------------------------TTT-AAGT-A-------------ATATTTTTA
droEle1 scf7180000491249:5768918-5769042 - CCCCTTA-C---TCGTA------GAGTGAAAGGGTATATTGTATTCGTTGAAA-------AGTATGT---------------AACAGGTAGAAGGAAGCGTTTCCGACCTTATAAAGTATATATATTCTTGATCAGGATAAATAGCCGAGTCGA------------------------------------------------------------------------------------------------------------------------------TTT
droRho1 scf7180000764493:400-535 - CCCGTTA-C---TCGTA------GAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGT---------------AACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATA--AT----------------------------------------------------------------TAAATGTTTGC----ACCATAAGTTTT-ACATA----------------------------AAAAAAA-C-------------T--TTATTT
droBia1 scf7180000302073:23956-24085 - CCAGTTA-C---TC-TA------GAGTAAAAGGGTATACTAGATTCGTCGGAA-------AGTATGT---------------AACAGGTAGAAGGAGGCGTTTCCGACCACATAAAGTATATATATTCCTGCACAGGATCACTAGCAGAGTCGT------------------------------------------------------------------------------------------------------------------------TTTCTATTA
droTak1 scf7180000415786:102496-102648 - CCCGTTA-C---TCGTA------GAGTAAAAGGTTATATTGTATTCGTGCAAA-------AGTATGT---------------AACAGCTAGAAGGAAGCATTTCCGACCCTATAAAGTATATACAAACCTAGT------------------CAA-------AAGTATTTTCACAAATTTGAATG------TTAACT---------------------------------------------GTAC------------------TCATATT----TTGAATTTA
droEug1 scf7180000408987:524473-524613 - CCCGTTA-C---TCTTA------GAGTAAGAGACTATATTAGATTCTTTGAAA-------AATATGT---------------AACTGGTAGAAGCAATCGTTTCCGACCCTATAAAGTTATTTCAAT-----TCAATT-------------CAA-------TAATTTTGCTTTATTTTTCAATA-----------------------------------------------------------------------TCAT-T-------------TTCAATTTT
dm3 chr2R:1498042-1498181 - CCCGTTA-C---TCGTA------GAGTAAAAGGGTACACTAGATTTGTTGAAA-------AGTATGT---------------AGCAGGCAGAAAGAAACGTTTCCGACCATATACAGTATATATATTCATATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGTTTTT-TCTCAT-------------TTTATTCAC
droSim2 2l:4107-4242 - CCCATTA-C---TCGTA------TAGTAAAGGGGTATACTAGATTCGTTGAAT-------AGTATGT---------------TACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TTTATTTTA
droSec2 scaffold_14:17912-18045 - CCCATTA-C---TCGTA------TAGTAAAGGGGTATACTAGATTCGTTGATA-------AGTATGT---------------TACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---ATA----------------------------AAAAAAA-A-------------TTTATTTTA
droYak3 v2_chrUn_5271:2720-2857 - CCCGTTA-C---TCGTA------GAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGT---------------AACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATAAT----------------------------------------------------------------AAACTTTTTTG----GTGATAGATTTA---ATG----------------------------AAAAAAA-A-------------TATATTTTC
droEre2 scaffold_4694:13704-13847 - CCCGTTA-C---TCGTA------GAGTTAAAGGGTATACTAGATTCGTTGAGTATGT---AATATGT---------------AACAAGCAGAAGGAAACGTTTCCGACCATATAAAATATCTATAATT----------------------------------------------------------------ACACGTTCATAATATCCATATG-------TCA---------------AA-----------AAAAAAT-A-------------ATTTTTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCATGGC-TGCCTTGTA------GGCGATGCAGC--CCTTGTAGGCGCTGATT-------TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-ACGCTCCTCGGCTTGCTGCAGGTGTCG---TCGTCGTCAGGTGCCC------ACCCGC-----------------------GCCT--ACAG------------------TATGCGCGGGTACGGCAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GG......................................................................................................................................................222011.0522132117000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------....................................................................................................................................25125.33640640000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGA....................................................................................................................................................24203.60720711000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---G.......................................................................................................................................................21203.45692661000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGG.....................................................................................................................................................23202.25450450000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-A................................................................................................................................2552.2011090002
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------....................................................................................................................................22121.25150112002
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------C...................................................................................................................................26121.00120120000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GG......................................................................................................................................................21200.80160160000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GGGA....................................................................................................................................................23200.55110110000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------C...................................................................................................................................23120.506051000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------....................................................................................................................................24120.425050000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---........................................................................................................................................................20200.408080000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-A................................................................................................................................2850.402020000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-AA...............................................................................................................................2650.402020000
............................................................TGGGCGC---------------CCTG-GCAGTT-GG...........................................................................................................................................................................................19160.254031000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-.................................................................................................................................24120.253030000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGT....................................................................................................................................................24200.255050000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAA---------------....................................................................................................................................25200.255050000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGA....................................................................................................................................................21200.204031000
.......................................................................................GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-AC...............................................................................................................................2450.201010000
.....................................................................................G-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-ACG..............................................................................................................................2650.201010000
...........................................................................................TT-GGC-------------------------GCATTT---GGGAG---------------CG-ACG..............................................................................................................................2150.201010000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-AC...............................................................................................................................2650.201010000
............................................................................................T-GGC-------------------------GCATTT---GGGAG---------------CG-ACGA.............................................................................................................................2160.171010000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---G.......................................................................................................................................................20200.153030000
............................................................TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------GCATTT---G.......................................................................................................................................................2770.141010000
............................................................TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------.................................................................................................................................................................20150.132020000
............................................................TGGGCGC---------------CCTG-GCAGTT-G............................................................................................................................................................................................18160.132020000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GGG.....................................................................................................................................................22200.102020000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAC---------------....................................................................................................................................25200.102020000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-.................................................................................................................................27120.081010000
...................................................................................CTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------A...................................................................................................................................24120.081010000
...................................................................................CTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------....................................................................................................................................23120.081010000
.....................................................................................G-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-TT...............................................................................................................................25120.081010000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------C...................................................................................................................................25120.081010000
.....................................................................................G-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------CG-T................................................................................................................................24120.081010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------A...................................................................................................................................26120.081010000
.....................................................................................G-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------C...................................................................................................................................22130.081010000
............................................................TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------T................................................................................................................................................................21150.071010000
.............................................................GGGCGC---------------CCTG-GCAGTT-GGC-------------------------GCA..............................................................................................................................................................22150.071010000
............................................................TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------GCA..............................................................................................................................................................23150.071010000
............................................................TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------G................................................................................................................................................................21150.071010000
............................................................TGGGCGC---------------CCTG-GCAGTT-GGC-------------------------GCATT............................................................................................................................................................25150.071010000
.......................................................................................GCAGTT-GGC-------------------------GCATTT---GGGA....................................................................................................................................................19200.051010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGTA---------------....................................................................................................................................25200.051010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTA---........................................................................................................................................................20200.051010000
.................................................................GC---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGA....................................................................................................................................................25200.051010000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAA---------------....................................................................................................................................22200.051010000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GG......................................................................................................................................................19200.051001000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGGG....................................................................................................................................................24200.051010000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GGGT....................................................................................................................................................23200.051010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGT.....................................................................................................................................................23200.051010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGAT....................................................................................................................................................24200.051010000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGG.....................................................................................................................................................20200.051001000
...................................................................................CTG-GCAGTT-GGC-------------------------GCATTT---GGTT....................................................................................................................................................22200.051010000
..................................................................................CCTG-GCAGTT-GGC-------------------------GCATTT---GGA.....................................................................................................................................................22200.051010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCAT.............................................................................................................................................................18200.051010000
....................................................................................TG-GCAGTT-GGC-------------------------GCATTT---GGGAG---------------T...................................................................................................................................23200.051010000
..................................................................C---------------CCTG-GCAGTT-GGC-------------------------GCATTT---GGA.....................................................................................................................................................23200.051010000
dp5
CCCGATA-C---TCANA----ATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGT---------------AACGTGCAGAAGGAATCGTTTCCGACCCCATAAAGTATACATAAG-------------------------------------------------------------------GAATGT------GCC--------------G----------------------------AAAAGAA-ACTGCACACTTTG-TTTTTCTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................TGCAGAAGGAATCGTTTCCGAC...............................................................................................................................................................................2220.5010010000000
......................................................................................TGCAGAAGGAATCGTTTCCGACCC.............................................................................................................................................................................2420.5010010000000
....................................................AAAGTGGATGTGTGT---------------AACGTG...................................................................................................................................................................................................2120.5010100000000
...........................................................................................................................TAAG-------------------------------------------------------------------GAATGT------GCC--------------G----------------------------AAAAGAA-ACTGC..................2670.4330000000210
..........................................ATTTGTGGTAAAAGTGGATGTG...........................................................................................................................................................................................................................22200.3570700000000
................................................................TGT---------------AACGTGCAGAAGGAATCG.......................................................................................................................................................................................2130.3310000001000
......................................................AGTGGATGTGTGT---------------AACGTGC..................................................................................................................................................................................................2030.3310100000000
.......................................................................................................................................................................................................T------GCC--------------G----------------------------AAAAGAA-ACTGCACACTTTG-.........2530.3310100000000
.................................................................GT---------------AACGTGCAGAAGGAATCGT......................................................................................................................................................................................2130.3310000001000
...............................................TGGTAAAAGTGGATGTGTGT---------------.........................................................................................................................................................................................................20200.3060000006000
...............................................................GTGT---------------AACGTGCAGAAGGAATC........................................................................................................................................................................................2140.2510000001000
................................................GGTAAAAGTGGATGTGTGT---------------AA.......................................................................................................................................................................................................21200.2040400000000
..........................................ATTTGTGGTAAAAGTGGAT..............................................................................................................................................................................................................................19200.1530300000000
...........................................................................................................................TAAG-------------------------------------------------------------------GAATGT------GCC--------------G----------------------------AAAAGAA-ACTG...................2570.1410100000000
.............................................TGTGGTAAAAGTGGATGTGTGT---------------AACGT....................................................................................................................................................................................................27200.0510000000100
.............................................TGTGGTAAAAGTGGATGTGT..........................................................................................................................................................................................................................20200.0510000000010
............................................................................................AGGAATCGTTTCCGACCCCAT..........................................................................................................................................................................21200.0510100000000
................................GGTATATTAGATTTGTGGTAA......................................................................................................................................................................................................................................21200.0510000000010
droWil2
CCATACA-C---TCATA------GAGTGAAATGGTATATTAAAGTCGCCAAAA-------TGTATGT---------------AACAGGCAGAAGGAATCTTTTCCTACCCCATAAAGTATATATATTCTTGATCGCGCAATTTAA-----------------------------------------------------------------------------------------------------------AAAAGGC-G-------------TTTATCGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...TACA-C---TCATA------GAGTGAAATGGTATAT....................................................................................................................................................................................................................................................2620.50101000
............................................................TGTATGT---------------AACAGGCAGAAGGAATC........................................................................................................................................................................................24200.30600060
............................................................TGTATGT---------------AACAGGCAGAAGGAAT.........................................................................................................................................................................................23200.15300030
............................AAATGGTATATTAAAGTCGCC..........................................................................................................................................................................................................................................21200.15303000
....................................................A-------TGTATGT---------------AACAGGCAGAAGGAATC........................................................................................................................................................................................25200.10200020
.............................................................GTATGT---------------AACAGGCAGAAGGAATC........................................................................................................................................................................................23200.10202000
.................................................AAAA-------TGTATGT---------------AACAGGCAGAAGGAAT.........................................................................................................................................................................................27200.10201010
..................................................AAA-------TGTATGT---------------AACAGGCAGAAGGAATC........................................................................................................................................................................................27190.05100010
...............TA------GAGTGAAATGGTATATTAAAGTCG............................................................................................................................................................................................................................................26200.05100010
..................................................AAA-------TGTATGT---------------AACAGGCAGAAGGAAT.........................................................................................................................................................................................26200.05100010
..............................................................TATGT---------------AACAGGCAGAAGGAATC........................................................................................................................................................................................22200.05100010
droVir3
CCCTGAA-C---CCATTAAAAATGAGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGT---------------AACAGACAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTGGATCAGCATCAATAGCCGAGTCGA------------TCTTCTTA-----------------AAACTTTTTTA----TT---------------------------------------------TTTATC-A-------------TTCATTTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................TCCAAATGTATGT---------------AACAGACAGAAGG............................................................................................................................................................................................26203.6573000000000000000000000001192614000020000650000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATTG..................................................................................................................................................................................................................................................26202.3046003010012000100000000001583103003091111100000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATT...................................................................................................................................................................................................................................................25202.20440020101012010110000000000144701002050001000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACAGAAG.............................................................................................................................................................................................25201.3026000000000000000000000000408401000090000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATAT....................................................................................................................................................................................................................................................24200.8517002000000000000000000001051010001041100000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACAGAAGGA...........................................................................................................................................................................................27200.8016000000000000000000000000232200000060010000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATTGT.................................................................................................................................................................................................................................................27190.5811001000001000200000000000010001000050000000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACAGA...............................................................................................................................................................................................23200.5511000000000000000000000001503000000020000000000000000000000000000
.............................................................GTATGT---------------AACAGACAGAAGGAAGCATC.....................................................................................................................................................................................26200.5010000000004000000000000000114000000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATTGTA................................................................................................................................................................................................................................................28190.326001000000000000000000000021000000010010000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACAGAA..............................................................................................................................................................................................24200.306000000000000000000000000220110000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGG.........................................................................................................................................................................................................................................................19200.204000000001000000000000001100000000001000000000000000000000000000
..............................................................TATGT---------------AACAGACAGAAGGAAGCATC.....................................................................................................................................................................................25200.153000000002000000000000000000010000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATA.....................................................................................................................................................................................................................................................23200.153001000000000000000000000000020000000000000000000000000000000000
.........................................................................................................................TATATTCTGGATCAGCATCAATA...........................................................................................................................................2370.141000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................TATATATTCTGGATCAGCATCAAT............................................................................................................................................2470.141000000000000000000000000000010000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGT........................................................................................................................................................................................................................................................20200.102000000000000000000000000000000200000000000000000000000000000000
.............................................................GTATGT---------------AACAGACAGAAGGAAGCAT......................................................................................................................................................................................25200.102000000000000000000001000001000000000000000000000000000000000000
......................................TTGTATTTGTGCAAAATCCAAATG.............................................................................................................................................................................................................................24200.102000000000000000000000000000000000000002000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACAG................................................................................................................................................................................................22200.102000000000000000000000000010010000000000000000000000000000000000
........................................................CAAATGTATGT---------------AACAGACAGAAGG............................................................................................................................................................................................24200.102000000000000000000000001001000000000000000000000000000000000000
...........................................................ATGTATGT---------------AACAGACAGAAGGAAGCATC.....................................................................................................................................................................................28200.102000000000000000000000000200000000000000000000000000000000000000
.................................................................................................................................GGATCAGCATCAATAGCCGAG.....................................................................................................................................21120.081000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................TATATATTCTGGATCAGCATC...............................................................................................................................................21140.071000000000000000000000000000000000010000000000000000000000000000
......................TGAGTATAAGGGTATATTGTATTTGTG..........................................................................................................................................................................................................................................27170.061000000000000000000000000001000000000000000000000000000000000000
....................AATGAGTATAAGGGTATATTGTATT..............................................................................................................................................................................................................................................25170.061000000000000000000000000000000000001000000000000000000000000000
........C---CCATTAAAAATGAGTATAAGGGTATAT....................................................................................................................................................................................................................................................28190.051000000000000000000000000000000000000010000000000000000000000000
...............TTAAAAATGAGTATAAGG..........................................................................................................................................................................................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTAA......................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................CCAAATGTATGT---------------AACAGACAGAAGGAA..........................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
....................................................AATCCAAATGTATGT---------------AACAGACAGAAA.............................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATTC..................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATTGTT................................................................................................................................................................................................................................................28200.051000000000000000000000000010000000000000000000000000000000000000
.............................................................GTATGT---------------AACAGACAGAAGGAAGCA.......................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................ACAGAAGGAAGCATCTCCGACCCCATAA........................................................................................................................................................................28200.051000000000000000000000000100000000000000000000000000000000000000
.............................................................GTATGT---------------AACAGACAGAAGGAAGC........................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
............CCATTAAAAATGAGTATAAGGGTATAT....................................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACA.................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTATATC...................................................................................................................................................................................................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
........................................................CAAATGTATGT---------------AACAGACAGAAGGAAG.........................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
................TAAAAATGAGTATAAGGGTATAT....................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................GT---------------AACAGACAGAAGGAAGCATCTCC..................................................................................................................................................................................25200.051000000000000000100000000000000000000000000000000000000000000000
......................................................TCCAAATGTATGT---------------AACAGACAGAAGGAA..........................................................................................................................................................................................28200.051000000000000000000000000000000000001000000000000000000000000000
......................................................................................GACAGAAGGAAGCATCTCCGAC...............................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................GCATCTCCGACCCCATAAAGTATATAT...............................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
...............TTAAAAATGAGTATAAGGGTAT......................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
..................................................................T---------------AACAGACAGAAGGAAGCATCTCCGAC...............................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................ATCAGCATCAATAGCCGAGT....................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
ATTGAAA-A---TGGGA------A---ATCAGGGTATAATGGTTTTGTAAAAA-------AGTATGT---------------AAGGGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGCACGACGAGCTGAATCGA------------------------------------------------------------TTTC---ATA---------------------------CTAGAGAT-T-------------TATGCTTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................CCCCATAAAGTATATATATTCTTGA.......................................................................................................................................................25200.051100000
droGri2
GCCCGAGCCTCCTTATA------TTTAGGGCAAC--CTTTGTAGCAGGACACA-------TGGCTGC---------------CTTC-GCAATT-GGC-------------------------GCACTT---AGGAT---------------TG-GCGATCCTCGTCGCGCTGCAGG--------CCGTGGAAGGATGCGC------TCCCGCACACTTCATGCAGATAAAAGGGCGGCG--GCAG------------------TAATTTTTTGTGTGTCCAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................G--------CCGTGGAAGGATGCGC------TCCCGCA......................................................................24200.05110
...........................................................................................................................................................................GCAGG--------CCGTGGAAGGATGCGC------TC...........................................................................23200.05110
..........................................................................................................................GCACTT---AGGAT---------------TG-GCGATCCTCGTC.....................................................................................................................25200.05110
.............................................................................................................................................................................................................................GCAGATAAAAGGGCGGCG--GCAG------------------....................22200.05101
droAna3
TGCCTTT-----TGGTA------GGCTGGACAGCC--TTTATAAGCGCTGATG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGGCTTGGAGCAAG--------CCGATGTTAGGTGGTT------TTCAGCGCATTTGAGGCAACGAGGACCGCGCCT--ACAC------------------TCATTCTTCCCATGGCCGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCATTTG................................................................25116.00161104010
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCATTTGA...............................................................26115.00151023000
..............................................................................................................................................................................................................................................T--ACAC------------------TCATTCTTCCCATGGCCGAA25111.0011920000
...............................................................................................................................................................................................TAGGTGGTT------TTCAGCGCATTTGAGG.............................................................2518.008620000
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCATTTGAGG.............................................................2816.006600000
.......................................TATAAGCGCTGATG-------TGTGCGC---------------CACC-....................................................................................................................................................................................................2516.006060000
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCATT..................................................................2316.006320001
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGGCTTG..................................................................................................................2516.006600000
...............................................................................................CA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGG......................................................................................................................2615.005500000
...............................................................................................................................................................................................................TCAGCGCATTTGAGGCAACGAGGACC..................................................2615.005050000
.....................................................................................C-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------G...................................................................................................................................2215.005122000
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGGCTTGG.................................................................................................................2614.004400000
..............................................................................................GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGGC.....................................................................................................................2814.004310000
..............................................................................................................................................................................................................................................T--ACAC------------------TCATTCTTCCCATGGCC...2214.004130000
...............................................................................................CA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGGC.....................................................................................................................2714.004400000
...........................................................................................................................................................TATTCCGAGGCTTGGAGCAAG--------CCGA...............................................................................................2514.004400000
..............................................................................................................................................................................................................................................T--ACAC------------------TCATTCTTCCCATGGCCGA.2414.004310000
.......................................TATAAGCGCTGATG-------TGTGCGC---------------CACC-GCA.................................................................................................................................................................................................2814.004400000
...............................................................................................................................................................................................................TCAGCGCATTTGAGGCAACGAGGAC...................................................2514.004040000
...........................................................................................................................................................TATTCCGAGGCTTGGAGCAAG--------C..................................................................................................2213.003120000
...............................................................................................CA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAG.......................................................................................................................2513.003300000
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGGCTT...................................................................................................................2413.003120000
..................................................................................CACC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------G...................................................................................................................................2513.003030000
.....................................................................................C-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-C................................................................................................................................2413.003210000
..............................................................................................................................................................................................................................................T--ACAC------------------TCATTCTTCCCATGGCCG..2313.003300000
................................................................................................A-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGG......................................................................................................................2513.003300000
.....................................TTTATAAGCGCTGATG-------TGTGCGC---------------CACC-....................................................................................................................................................................................................2713.003030000
................................................................................................................................................................................................AGGTGGTT------TTCAGCGCATTTGAGG.............................................................2412.002110000
...............................................................................................................................................................................................TAGGTGGTT------TTCAGCGCATTTGAG..............................................................2412.002200000
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGGC.....................................................................................................................2212.002100001
...................................................................................ACC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-C................................................................................................................................2612.002110000
......................................TTATAAGCGCTGATG-------TGTGCGC---------------CACC-....................................................................................................................................................................................................2612.002020000
..........................................................................................GTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCC..........................................................................................................................2612.002110000
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCATTTGAG..............................................................2712.002101000
....................................................................................CC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------G...................................................................................................................................2312.002200000
.............................................................................................................................................................................................GTTAGGTGGTT------TTCAGCGCATTTG................................................................2412.002200000
.......................................................................................GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-C................................................................................................................................2312.002020000
..................................................................................CACC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-C................................................................................................................................2712.002110000
.....................................................................................C-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-.................................................................................................................................2312.002110000
............................................................................................T-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAG.......................................................................................................................2712.002200000
................................................TGATG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------.................................................................................................................................................................2512.002200000
...........................................................................................TT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGA........................................................................................................................2712.002200000
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGG......................................................................................................................2112.002110000
..............................................................................................................................................................................................................TTCAGCGCATTTGAGGCAACGAGG.....................................................2412.002020000
..............................................................................................................................................................................................................TTCAGCGCATTTGAGGCAACGAGGA....................................................2512.002020000
...........................................................................................................................................................TATTCCGAGGCTTGGAGCAAG--------CC.................................................................................................2312.002020000
...........................................................................................TT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCC..........................................................................................................................2512.002110000
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGGCTTGGAG...............................................................................................................2812.002200000
..............................................................................................GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAG.......................................................................................................................2612.002200000
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCATTT.................................................................2412.002200000
............................................................................................T-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCC..........................................................................................................................2412.002110000
..............................................................................................................................................................................................................................................T--ACAC------------------TCATTCTTCCCATGGC....2112.002020000
..............................................................................................GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGG......................................................................................................................2712.002100010
...............................................................................................................................T---GGCAG---------------GG-CTATTCCGAGGCTTGG.................................................................................................................2411.001100000
...........................................................................................................................................................TATTCCGAGGCTTGGAGCAAG--------...................................................................................................2111.001001000
....................................................................................................................................GCAG---------------GG-CTATTCCGAGGCTTGG.................................................................................................................2211.001100000
.......................................TATAAGCGCTGATG-------TGTGCGC---------------CACC-GCAG................................................................................................................................................................................................2911.001000010
......................................................................................................................................................................TTGGAGCAAG--------CCGATGTTAGGTGGTT------.............................................................................2611.001010000
............................................................................................................................ATTT---GGCAG---------------GG-CTATTCCGAGA......................................................................................................................2211.001010000
.............................................................................................................................................................TTCCGAGGCTTGGAGCAAG--------CC.................................................................................................2111.001010000
.......................................................................................GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTA..............................................................................................................................2511.001000010
............................................................................................................................................................................................TGTTAGGTGGTT------TTCAGCGCAT...................................................................2211.001100000
...................................................TG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GC...............................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................ACAC------------------TCATTCTTCCCATGGCCGA.2311.001100000
....................................................................................CC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-C................................................................................................................................2511.001100000
.....................................................................................C-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTA..............................................................................................................................2611.001000010
................................................................................................A-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGGC.....................................................................................................................2611.001010000
............................................................TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GCT..............................................................................................................................................................2311.001100000
...............................................................................................CA-------------------------GCATTT---GGCAG---------------GG-CTATTCCG.........................................................................................................................2311.001100000
...............................................................................................................................T---GGCAG---------------GG-CTATTCCGAGGCTTGC.................................................................................................................2411.001010000
................................................TGATG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GCA..............................................................................................................................................................2811.001100000
............................................................................................................................ATTT---GGCAG---------------GG-CTATTCCGAGGCT....................................................................................................................2411.001010000
...............................................................................................CA-------------------------GCATTT---GGCAG---------------GG-CTATTCC..........................................................................................................................2211.001100000
...........................................................................................................................CATTT---GGCAG---------------GG-CTATTCCGAGGC.....................................................................................................................2411.001100000
.GCCTTT-----TGGTA------GGCTGGACAGCC--......................................................................................................................................................................................................................................................2311.001100000
...........................................AGCGCTGATG-------TGTGCGC---------------CACC-GCAG................................................................................................................................................................................................2511.001100000
.....................................................................................C-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------....................................................................................................................................2111.001010000
............................................................................................T-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGA........................................................................................................................2611.001100000
...............................................................................................................................................................................................................TCAGCGCATTTGAGGCAACGAGGACCGC................................................2811.001100000
..............................................................................................................................................................................................................................................T--ACAC------------------TCATTCTTCCCATG......1911.001100000
................................GCC--TTTATAAGCGCTGATG-------TG.............................................................................................................................................................................................................................2111.001100000
..........................................................................................GTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATT............................................................................................................................2411.001100000
...............................................................................................................................T---GGCAG---------------GG-CTATTCCGAGGCTTGGAG...............................................................................................................2611.001100000
....................................................................................CC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-.................................................................................................................................2411.001000001
...............................................................................................CA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAGGCT....................................................................................................................2811.001100000
..........................................................................................................................GCATTT---GGCAG---------------GG-CTATTCCGAGGC.....................................................................................................................2511.001100000
...............................................................................................................................................................................................................TCAGCGCATTTGAGGCAACGAG......................................................2211.001100000
....................................................................................CC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTT..............................................................................................................................2711.001100000
......................................................................................................................................................................TTGGAGCAAG--------CCGATGTTAGGTGG.....................................................................................2411.001000010
................................................TGATG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GC...............................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................TTCAGCGCATTTGAGGCAACGAG......................................................2311.001100000
..........................................................................................GTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGA........................................................................................................................2811.001100000
...............................................................................................................................................................................................TAGGTGGTT------TTCAGCGCATTTGAGGCA...........................................................2711.001100000
.......................................................................................................................................................................TGGAGCAAG--------CCGATGTTAGGTG......................................................................................2211.001010000
................................................TGATG-------TGTGCGC---------------CACC-GCAGTT-GC...........................................................................................................................................................................................2411.001100000
...........................................................................................................................CATTT---GGCAG---------------GG-CTATTCCGAGG......................................................................................................................2311.001001000
..................................................................................................................................................................................................GTGGTT------TTCAGCGCATTTGAGGCA...........................................................2411.001100000
...................................................................................................................................................................................................TGGTT------TTCAGCGCATTTGAGGC............................................................2211.001010000
...............................................................................................................................T---GGCAG---------------GG-CTATTCCGAGGCTTGGA................................................................................................................2511.001100000
.........................................TAAGCGCTGATG-------TGTGCGC---------------CACC-GCAGT...............................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................GCGCATTTGAGGCAACGAGGAC...................................................2211.001010000
.....................................TTTATAAGCGCTGATG-------TGTGC..........................................................................................................................................................................................................................2111.001010000
.........................................................................................AGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATT............................................................................................................................2511.001100000
...........................................................................................TT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGAT.......................................................................................................................2811.001100000
..............................................................................................GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCGA........................................................................................................................2511.001100000
.............................................................................................................................................................................AAG--------CCGATGTTAGGTGGTT------TTCAGCG......................................................................2611.001100000
................................GCC--TTTATAAGCGCTGATG-------TGTGCG.........................................................................................................................................................................................................................2511.001100000
........................................................................................CAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTAT.............................................................................................................................2511.001100000
...................................................TG-------TGTGCGC---------------CACC-GCAGTT-GCA-------------------------GCATT............................................................................................................................................................2711.001100000
..............................................................................................GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCG.........................................................................................................................2411.001000010
...............................................................................................................................................................................................TAGGTGGTT------TTCAGCGCATTTGAGGC............................................................2611.001100000
...................................................................................ACC-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------G...................................................................................................................................2411.001010000
...............................................................................................................................T---GGCAG---------------GG-CTATTCCGAGGCTTG..................................................................................................................2311.001100000
..............................................................................................GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCC..........................................................................................................................2311.001100000
..............................................................................................................................................................................................................TTCAGCGCATTTGAGGCAACGAGGAC...................................................2611.001100000
.......................................................................................................................................................................TGGAGCAAG--------CCGATGTTAGGT.......................................................................................2111.001010000
.............................................................................................................................TTT---GGCAG---------------GG-CTATTCCGAGGCTTGGA................................................................................................................2711.001100000
...........................................................................................TT-GCA-------------------------GCATTT---GGCAG---------------GG-CTATTCCG.........................................................................................................................2611.001100000
......................................................................................................................................................................................................TT------TTCAGCGCATTTGAGGCA...........................................................2011.001100000
......................................TTATAAGCGCTGATG-------TGTGCGC---------------CACC-G...................................................................................................................................................................................................2711.001100000
..............................................................................................................................TT---GGCAG---------------GG-CTATTCCGAGGCTTGG.................................................................................................................2511.001100000
........................................................................................CAGTT-GCA-------------------------GCATTT---GGCAG---------------G...................................................................................................................................2011.001100000
...............................................................................................................................................................................................................TCAGCGCATTTGAGGCAACGAGGA....................................................2411.001010000
...............................................................................................................................................................................................................TCAGCGCATTTGAGGCAACGAGG.....................................................2311.001010000
............................................................................................................................ATTT---GGCAG---------------GG-CTATTCCGAGG......................................................................................................................2211.001100000
............................................................................................T-GCA-------------------------GCATTT---GGCAG---------------GG-CTATT............................................................................................................................2211.001010000
..........................................AAGCGCTGATG-------TGTGCGC---------------CACC-GC..................................................................................................................................................................................................2411.001100000
.......................................TATAAGCGCTGATG-------TGTGCGC---------------CACC-GC..................................................................................................................................................................................................2711.001010000
.....................................................................................C-GCAGTT-GCA-------------------------GCATTT---GGCAG---------------GG-CTAT.............................................................................................................................2711.001100000
..............................................................................................................................................................................................................TTCAGCGCATTTGAGGCAACGAGGACC..................................................2711.001100000
..........................................................................................GTT-GCA-------------------------GCATTT---GGCAG---------------GG-CT...............................................................................................................................2111.001100000
...........................................................................................TT-GCA-------------------------GCATTT---GGCAG---------------GG-CTAT.............................................................................................................................2211.001010000
droBip1
CCCGGTA-C---TCGGA------GAGTAAAAGAGTACATTGTATTCGCGTGAA-------TGTGTGT---------------AACATAGAGAAGGATACATCTCCGACCCCTTGAGGTATATACAGG----GTGACAATAAATAACCCGGACAA---------------------------------------ACATTTTTG----ATCATAACTTT----------------------------------TTAAGGAA-C-------------TGTATTTGASizeHit CountTotal NormTotal
No Reads
droKik1
ATATGGC-T---CCGTG------GG-CAGGCAAC--TCCTGGACT--TCAGGC-------AGTCCGTCACCCAATCCGGCGTCACT-ATGATA-ATG-------------------------GCATTCTTGGGCAGCGCCA--------------------GCGCCTTGTTGTAGATGCCACCG------TTAGCCGCC---------CCGCAT---------------------------ACCA------------------GATGCGTGTTTGTGGCCCCASizeHit CountTotal NormTotal
No Reads
droFic1
CCCGTTT-T---TCGTA------GAGTAAACGGGTCTACTGCATTTGTGGAAA-------AGTATGT---------------AACAGATCGAAGGAAGCCTTTGTGACCCCATAAAGTATATAGATTCTTTATTAGGAATATCAGATGAAT---------------------------------------------------------------TTTA---ATC---------------------------TTT-AAGT-A-------------ATATTTTTASizeHit CountTotal NormTotal
No Reads
droEle1
CCCCTTA-C---TCGTA------GAGTGAAAGGGTATATTGTATTCGTTGAAA-------AGTATGT---------------AACAGGTAGAAGGAAGCGTTTCCGACCTTATAAAGTATATATATTCTTGATCAGGATAAATAGCCGAGTCGA------------------------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droRho1
CCCGTTA-C---TCGTA------GAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGT---------------AACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATA--AT----------------------------------------------------------------TAAATGTTTGC----ACCATAAGTTTT-ACATA----------------------------AAAAAAA-C-------------T--TTATTTSizeHit CountTotal NormTotal
No Reads
droBia1
CCAGTTA-C---TC-TA------GAGTAAAAGGGTATACTAGATTCGTCGGAA-------AGTATGT---------------AACAGGTAGAAGGAGGCGTTTCCGACCACATAAAGTATATATATTCCTGCACAGGATCACTAGCAGAGTCGT------------------------------------------------------------------------------------------------------------------------TTTCTATTASizeHit CountTotal NormTotal
No Reads
droTak1
CCCGTTA-C---TCGTA------GAGTAAAAGGTTATATTGTATTCGTGCAAA-------AGTATGT---------------AACAGCTAGAAGGAAGCATTTCCGACCCTATAAAGTATATACAAACCTAGT------------------CAA-------AAGTATTTTCACAAATTTGAATG------TTAACT---------------------------------------------GTAC------------------TCATATT----TTGAATTTASizeHit CountTotal NormTotal
No Reads
droEug1
CCCGTTA-C---TCTTA------GAGTAAGAGACTATATTAGATTCTTTGAAA-------AATATGT---------------AACTGGTAGAAGCAATCGTTTCCGACCCTATAAAGTTATTTCAAT-----TCAATT-------------CAA-------TAATTTTGCTTTATTTTTCAATA-----------------------------------------------------------------------TCAT-T-------------TTCAATTTTSizeHit CountTotal NormTotal
No Reads
dm3
CCCGTTA-C---TCGTA------GAGTAAAAGGGTACACTAGATTTGTTGAAA-------AGTATGT---------------AGCAGGCAGAAAGAAACGTTTCCGACCATATACAGTATATATATTCATATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGTTTTT-TCTCAT-------------TTTATTCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAGA...............................................................................................................................................................................................26132.003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000001000000000000000100104250000000000000000000000000000000000000000000000000000000000000000001200000000400000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAG................................................................................................................................................................................................25112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000020102010000000000000000000000000000000000000000000000000000000000000000000000000000311000000000000000000000000
...........................................TTTGTTGAAA-------AGTATGT---------------AGCAGGCAGA...............................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000031000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................TTTGTTGAAA-------AGTATGT---------------AGCAGGCA.................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCA.................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGG...................................................................................................................................................................................................2215.0050000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...........................................TTTGTTGAAA-------AGTATGT---------------AGCAGGC..................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGGCAGAAAGA...........................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
...........................................TTTGTTGAAA-------AGTATGT---------------AGCAGG...................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGGCAGAAA.............................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ACACTAGATTTGTTGAAA-------AGT............................................................................................................................................................................................................................2122.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000010000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGC..................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAGATC.............................................................................................................................................................................................2822.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAGAA..............................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................A-------AGTATGT---------------AGCAGGCAGAAAGAAACGT......................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................TTCATATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGT.................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAGAATC............................................................................................................................................................................................2951.6080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGGCAGAAATC...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGAAA-------AGTATGT---------------AGCAGGCAGAAAG............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAGAAA.............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTTGAAA-------AGTATGT---------------AGCAGGCAGAAA.............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGTTTTT-TCT.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AACGTTTCCGACCATATACAGT.....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TATATATTCATATATATATTCA------------A-----------------------------------------------------------------------------------CG--AC........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................T---------------AGCAGGCAGAAAGAAACGTTTCCGAC...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTTGTTGAAA-------AGTATGT---------------AGCAGGCAG................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................CATATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGTTT...............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAGT...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................A-------AGTATGT---------------AGCAGGCAGAAAGAAACG.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCATC...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTCCGACCATATACAGTATATATATTCA..........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TATTCATATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTT.....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CCGACCATATACAGTATATATATTCA..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................CATATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGT.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TATATATATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGTT................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................A-------AGTATGT---------------AGCAGGCAGAAAGAAACGTT.....................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................CACTAGATTTGTTGAAA-------AGTATGT---------------AG.......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAA-------AGTATGT---------------AGCAGGCAGAAAGAAAC........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................A-------AGTATGT---------------AGCAGGCAGAA..............................................................................................................................................................................................1931.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TATTCA------------A-----------------------------------------------------------------------------------CG--ACTTTAAGTTTTT-TCTCA.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTA------GAGTAAAAGGGTACACTAGATT..............................................................................................................................................................................................................................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGGCA.................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TA------GAGTAAAAGGGTACACTAGAT...............................................................................................................................................................................................................................................2340.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TACACTAGATTTGTTGAAA-------AG.............................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........C---TCGTA------GAGTAAAAGGGTACA.....................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTCCGACCATATACAGTATATATAT.............................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCAGGCAA................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGCA.....................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTGTTGAAA-------AGTATGT---------------AGC......................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................ATTTGTTGAAA-------AGTATGT---------------AGCA.....................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................CGTTTCCGACCATATACAGTA....................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A-C---TCGTA------GAGTAAAAGGGTAC......................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................TTTCCGACCATATACAGTATATATA..............................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTTGTTGAAA-------AGTATGT---------------AGCAGGCAGATC.............................................................................................................................................................................................2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCGTA------GAGTAAAAGGGTACACTAGAT...............................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTA------GAGTAAAAGGGTACACTAG.................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGGCAG................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GAAA-------AGTATGT---------------AGCAGGCAGA...............................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCGTA------GAGTAAAAGGGTACACTAGATT..............................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGAAA-------AGTATGT---------------AGCAGGCAG................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTA------GAGTAAAAGGGTACACTAGAT...............................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAA-------AGTATGT---------------AGCAGGCAGA...............................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGGC..................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............TCGTA------GAGTAAAAGGGTACACTAGA................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GTA------GAGTAAAAGGGTACACTAGA................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................TGAAA-------AGTATGT---------------AGCAGGCAGAA..............................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TATATTCATATATATATT................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTA------GAGTAAAAGGGTACACT...................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............CGTA------GAGTAAAAGGGTACACTAGAG...............................................................................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCGTA------GAGTAAAAGGGTACACTA..................................................................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCGTA------GAGTAAAAGGGTACACT...................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAAGGGTACACTAGATTTGA...........................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....TTA-C---TCGTA------GAGTAAAAGGGT........................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000
...............................................TTGAAA-------AGTATGT---------------AGCAGG...................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACTAGATTTGTTGAAA-------AGTA...........................................................................................................................................................................................................................20170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..CGTTA-C---TCGTA------GAGTAAAAGGG.........................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACTAGATTTGTTGAAA-------AGT............................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TAGATTTGTTGAAA-------AGTATGT---------------.........................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.....TA-C---TCGTA------GAGTAAAAGGGTA.......................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CCCGTTA-C---TCGTA------GAGTAAAA............................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000
.....................................ACTAGATTTGTTGAAA-------AGTAT..........................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.CCGTTA-C---TCGTA------GAGTAAAAGGGT........................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....TTA-C---TCGTA------GAGTAAAAGGGTA.......................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
CCCGTTA-C---TCGTA------GAGTAAAAGG..........................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
CCCGTTA-C---TCGTA------GAGTAAAAGGGT........................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCCATTA-C---TCGTA------TAGTAAAGGGGTATACTAGATTCGTTGAAT-------AGTATGT---------------TACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TTTATTTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGC..................................................................................................................................................................................................242129.50259002124080514913280119000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGA....................................................................261111.001110000006441600000000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGTT.....................................................................................................................................................................................25197.0097000200010090031000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................24184.0084000000000082011000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................27235.007000060012179430172000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................24229.5059000000641047001000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCA.................................................................................................................................................................................................25217.0034000200652120610000
.......................TAGTAAAGGGGTATACTAGATTCGT...........................................................................................................................................................................................................................................25116.001600000013405030000
................................................TGAAT-------AGTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................26213.0026000000126413000000
......................................................................................................................ACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGA....................................................................25113.0013000000210010000000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGAT...................................................................27113.001300000084010000000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCG.......................................................................................................................................................................................23111.001100010000009100000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGG.....................................................................25110.001000000081100000000
...............................GGGTATACTAGATTCGTTGAAT-------AGTA...........................................................................................................................................................................................................................26310.0030000000228000000000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGGAAG.........................................................................................................................................................................................2619.00900010000007001000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGGAA..........................................................................................................................................................................................2528.5017000100001013011000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGG...................................................................................................................................................................................................2327.001400010022315000000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGTTTC...................................................................................................................................................................................2717.00700000000007000000
............TCGTA------TAGTAAAGGGGTATACTAGA................................................................................................................................................................................................................................................2516.00600000000105000000
.......................TAGTAAAGGGGTATACTAGATTCGTT..........................................................................................................................................................................................................................................2616.00600000003012000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAG................................................................................................................................................................................................2625.501100000020112032000
......................................................................................................................ACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGAT...................................................................2615.00500000005000000000
.............................................................GTATGT---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................2514.00400000000004000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAG........................................................................................2714.00400110001010000000
..........................TAAAGGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................................................................................2634.001200000044001030000
..................................................................................................................AAGTACATC--AT----------------------------------------------------------------TAAGT.......................................................................................1614.00400000000004000000
..................................................................................TACAGGCAGAAGGAAGCGTTTCCGACCA.............................................................................................................................................................................2814.00400000000004000000
...............................GGGTATACTAGATTCGTTGAAT-------AG.............................................................................................................................................................................................................................2433.331000000008011000000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGGAAGC........................................................................................................................................................................................2713.00300100000002000000
...............TA------TAGTAAAGGGGTATACTAGATTCGT...........................................................................................................................................................................................................................................2713.00300000000003000000
.......................................................................................................................................................................................................T------ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------.........2613.00300000011100000000
.....................................................................................................................................................................................................TTT------ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TT.......3013.00300000012000000000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGG............................................................................................................................................................................................2323.00600000000006000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGTA......................................................................................2913.00300000001101000000
....................................................................................................................GTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGAT...................................................................2813.00300000000000021000
............................................TCGTTGAAT-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................2623.00600020003010000000
.......................................TAGATTCGTTGAAT-------AGTATGT---------------TACAGGC..................................................................................................................................................................................................2813.00300000003000000000
..............................................................TATGT---------------TACAGGCAGAAGG............................................................................................................................................................................................1822.50500000000005000000
................................................TGAAT-------AGTATGT---------------TACAGGCAGAAGGAA..........................................................................................................................................................................................2722.50500000021200000000
..................................................AAT-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................2022.50500000000005000000
....................................................T-------AGTATGT---------------TACAGGCAGAAGGAAGCG.......................................................................................................................................................................................2612.00200000000002000000
............TCGTA------TAGTAAAGGGGTATACTAGATT..............................................................................................................................................................................................................................................2712.00200010000001000000
.................................................................GT---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................2112.00200000000002000000
...............TA------TAGTAAAGGGGTATACTAGATT..............................................................................................................................................................................................................................................2412.00200000000000020000
..................................................................T---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................2012.00200000000002000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGT.......................................................................................2812.00200000001100000000
.....................................................................................................................................................................................................TTT------ACCATAGGATTA---TTA---------------AT-----------AAAA...........................2412.00200000000000002000
...ATTA-C---TCGTA------TAGTAAAGGGG.........................................................................................................................................................................................................................................................2112.00200000000002000000
..............................GGGGTATACTAGATTCGTTGAAT-------AGTA...........................................................................................................................................................................................................................2712.00200000002000000000
.....TA-C---TCGTA------TAGTAAAGGGGTATACTAGA................................................................................................................................................................................................................................................2812.00200000000011000000
................................................................TGT---------------TACAGGCAGAAGGAAGCGTT.....................................................................................................................................................................................2312.00200000000002000000
....TTA-C---TCGTA------TAGTAAAGGGGTATA.....................................................................................................................................................................................................................................................2412.00200000000002000000
.....................................................................................................TTCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TA..........................................................................................2612.00200000000100010000
......A-C---TCGTA------TAGTAAAGGGG.........................................................................................................................................................................................................................................................1812.00200000000002000000
....................................................................................................TTTCCGACCATATAAAGTACATC--AT----------------------------------------------------------------............................................................................................2512.00200001000001000000
.................................................................GT---------------TACAGGCAGAAGGAAGCGTT.....................................................................................................................................................................................2212.00200000000002000000
..................................................................................................................................................................................................................TAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TTTATT...2712.00200000010010000000
.............................AGGGGTATACTAGATTCGTTGAAT-------AGTA...........................................................................................................................................................................................................................2812.00200000011000000000
.........................................................................................................................TC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---..............................................................2512.00200000000200000000
...............................................................ATGT---------------TACAGGCAGAAGGAAGCGTT.....................................................................................................................................................................................2412.00200000000002000000
....................................................................................................................GTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGA....................................................................2712.00200000002000000000
............................................TCGTTGAAT-------AGTATGT---------------TACAGGC..................................................................................................................................................................................................2322.00400000010101010000
..................................................................................................................................................................................................................TAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TTTATTT..2812.00200000001100000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACA.....................................................................................................................................................................................................2121.50300012000000000000
.............................................................GTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................2021.50300000000003000000
..............................................................TATGT---------------TACAGGCAGAAG.............................................................................................................................................................................................1721.50300000000003000000
............................................TCGTTGAAT-------AGTATGT---------------TACAGGCA.................................................................................................................................................................................................2421.50300010000200000000
..........................................ATTCGTTGAAT-------AGTATGT---------------TACAGGC..................................................................................................................................................................................................2521.50300000011100000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAGAA..............................................................................................................................................................................................2821.50300000001100001000
..............................................................TATGT---------------TACAGGCAGAAGGAA..........................................................................................................................................................................................2021.50300000000003000000
...................................ATACTAGATTCGTTGAAT-------AGT............................................................................................................................................................................................................................2161.33803410000000000000
...........................AAAGGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................................................................................2531.33400000010001020000
...................................................................................................................................................................................................TATTT------ACCATAGGATTA---TTA---------------AT-----------AAAAA..........................2711.00100000010000000000
................................................................TGT---------------TACAGGCAGAAGGAAGCGTTTCCGAC...............................................................................................................................................................................2911.00100010000000000000
...............................................................ATGT---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................2311.00100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------TA.......................................................................................................................................................................................................1921.00200002000000000000
...................................................................................................................................................................................................TATTT------ACCATAGGATTA---TTA---------------AT-----------AAA............................2511.00100000000000010000
....................................................T-------AGTATGT---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................2711.00100000000001000000
.....TA-C---TCGTA------TAGTAAAGGGG.........................................................................................................................................................................................................................................................1911.00100000000010000000
..............................................................................................................................T----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---A.............................................................2311.00100000000000010000
..........................TAAAGGGGTATACTAGATTCGTTGAAT-------A..............................................................................................................................................................................................................................2811.00100000000000010000
..................................................................T---------------TACAGGCAGAAGGAAGCGTT.....................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATA.......................................................................2311.00100000010000000000
.......................TAGTAAAGGGGTATACTAGAT...............................................................................................................................................................................................................................................2111.00100000000000010000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGGAAGCG.......................................................................................................................................................................................2811.00100010000000000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAGT...............................................................................................................................................................................................2721.00200000010000001000
.............................................................GTATGT---------------TACAGGCAGAAGGAAG.........................................................................................................................................................................................2211.00100000000001000000
.......................TAGTAAAGGGGTATACTAGAA...............................................................................................................................................................................................................................................2111.00100000000000010000
..................................................................................................................AAGTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGA....................................................................2911.00100010000000000000
.....TA-C---TCGTA------TAGTAAAGGGGTATA.....................................................................................................................................................................................................................................................2311.00100000000001000000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAG......................................................................2411.00100000001000000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------T...........................................................................................2411.00100000000010000000
.............CGTA------TAGTAAAGGGGT........................................................................................................................................................................................................................................................1611.00100000000001000000
...............................................................................................................................................................................................................CCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TT.......2611.00100000010000000000
.......................................................................................................................................................................................................T------ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TT.......2811.00100000001000000000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---..............................................................2911.00100000001000000000
............................AAGGGGTATACTAGATTCGTTGAAT-------...............................................................................................................................................................................................................................2511.00101000000000000000
..................................................................................................................AAGTACATC--AT----------------------------------------------------------------TAAGTATT....................................................................................1911.00100000000001000000
.......................................................................................................CCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAG........................................................................................2611.00100010000000000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TA..........................................................................................2511.00100000001000000000
..CATTA-C---TCGTA------TAGTAAAGGG..........................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................CATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TT.......2511.00100000001000000000
.....................................................................................................................................................................................................TTT------ACCATAGGATTA---TTA---------------AT-----------AAAAA..........................2511.00100000000010000000
..............................................................................................................................T----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---TT............................................................2411.00100000000010000000
............................................................AGTATGT---------------TACAGGCAGAAGGAA..........................................................................................................................................................................................2221.00200000000002000000
.....................................................................................................................................................................................................TTT------ACCATAGGATTA---TTA---------------AT-----------AAAAAA.........................2611.00100000000000010000
..................................................................T---------------TACAGGCAGAAGGAAGCGTTT....................................................................................................................................................................................2211.00100000000001000000
..............................................................TATGT---------------TACAGGCAGAAGGAAG.........................................................................................................................................................................................2111.00100000000001000000
...ATTA-C---TCGTA------TAGTAAAGGGGT........................................................................................................................................................................................................................................................2211.00100000000001000000
..............................................................................................................................................................................................................ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TT.......2711.00100000010000000000
...............................................................................................................................................................................................TAAGTATTT------ACCATAGGATTA---TTA---------------A...........................................2511.00100000000100000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAA.........................................................................................2611.00100000000001000000
.............CGTA------TAGTAAAGGGGTA.......................................................................................................................................................................................................................................................1711.00100000000001000000
....TTA-C---TCGTA------TAGTAAAGGGGTATAC....................................................................................................................................................................................................................................................2511.00100000000001000000
..................................................................................................................................................................................................................TAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TT.......2311.00100000010000000000
.........................................................................................................................TC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---T.............................................................2611.00100000001000000000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGGAAGCGT......................................................................................................................................................................................2911.00100010000000000000
.............................AGGGGTATACTAGATTCGTTGAAT-------A..............................................................................................................................................................................................................................2511.00100000000000010000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAG.............................................................................................................................................................................................2221.00200000000002000000
.......................................................................................................................................................................................................T------ACCATAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------A........2711.00100000001000000000
.................................................GAAT-------AGTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................2521.00200000001001000000
..................................................................................................................AAGTACATC--AT----------------------------------------------------------------TAAGTAT.....................................................................................1811.00100000000001000000
...................................................................................................................AGTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCAT........................................................................2411.00100001000000000000
..............................................................................................................TATAAAGTACATC--AT----------------------------------------------------------------TAAGTATT....................................................................................2311.00100000010000000000
..............................GGGGTATACTAGATTCGTTGAAT-------AG.............................................................................................................................................................................................................................2511.00100000001000000000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGTTT....................................................................................................................................................................................2611.00100000000010000000
.......................................................................................................CCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATT....................................................................................3011.00100000001000000000
.....................................................................................................TTCCGACCATATAAAGTACATC--..............................................................................................................................................................2211.00100000000001000000
..............................................GTTGAAT-------AGTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................2821.00200000011000000000
.....................................................................................................................TACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATA..................................................................2811.00100000000100000000
......................................................................................................TCCGACCATATAAAGTACATC--AT----------------------------------------------------------------............................................................................................2311.00100000000001000000
................A------TAGTAAAGGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................................................................................3011.00100000010000000000
............TCGTA------TAGTAAAGGGGTATACTAGAA...............................................................................................................................................................................................................................................2611.00100000000001000000
............................................................................................................CATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATT....................................................................................2511.00100000000010000000
...................................................................................................................AGTACATC--AT----------------------------------------------------------------TAAGTATTT------AC...........................................................................2111.00100001000000000000
.............................................................................................................ATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATT....................................................................................2411.00100000001000000000
....TTA-C---TCGTA------TAGTAAAGGGGT........................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................GTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGAA...................................................................2811.00100000000000010000
..................................................................................................................................................................................................................TAGGATTA---TTA---------------AT-----------AAAAAAA-A-------------TTTA.....2511.00100010000000000000
.........................GTAAAGGGGTATACTAGATTCGT...........................................................................................................................................................................................................................................2340.75300000000003000000
...........................AAAGGGGTATACTAGATTCGTTG.........................................................................................................................................................................................................................................2330.67200000000001010000
..........................TAAAGGGGTATACTAGATTCGTTG.........................................................................................................................................................................................................................................2430.67200000000000020000
...............................GGGTATACTAGATTCGTTGAAT-------AGT............................................................................................................................................................................................................................2530.67200000001001000000
................................GGTATACTAGATTCGTTGAAT-------AGTA...........................................................................................................................................................................................................................2530.67200000002000000000
..........................TAAAGGGGTATACTAGATTCGTTGA........................................................................................................................................................................................................................................2530.67200000000100001000
................................................TGAAT-------AGTATGT---------------TACAGGCAGAAGG............................................................................................................................................................................................2520.50100000010000000000
....................................................T-------AGTATGT---------------TACAGGCAGAAGG............................................................................................................................................................................................2120.50100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCC.................................................................................................................................................................................................2520.50100010000000000000
..................................................AAT-------AGTATGT---------------TACAGGCAGAAGC............................................................................................................................................................................................2320.50100000000001000000
.............................................CGTTGAAT-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................2520.50100000010000000000
.............................................CGTTGAAT-------AGTATGT---------------TACAGGCAGAA..............................................................................................................................................................................................2620.50100000000000010000
............................................TCGTTGAAT-------AGTATGT---------------TACAGG...................................................................................................................................................................................................2220.50100000000000010000
...................................................AT-------AGTATGT---------------TACAGGCAG................................................................................................................................................................................................1820.50100000000001000000
...............................................TTGAAT-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................2320.50100000010000000000
..........................................ATTCGTTGAAT-------AGTATGT---------------TACAGG...................................................................................................................................................................................................2420.50100000010000000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAA................................................................................................................................................................................................2620.50100000000000010000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAG....................................................................................................................................................................................................2220.50100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCACT...............................................................................................................................................................................................2720.50100000000100000000
..................................TATACTAGATTCGTTGAAT-------AG.............................................................................................................................................................................................................................2140.50200200000000000000
.............................................................GTATGT---------------TACAGGCAGAAGGAA..........................................................................................................................................................................................2120.50100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAT................................................................................................................................................................................................2620.50100000000000001000
...............................................TTGAAT-------AGTATGT---------------TACAGGCAGAAG.............................................................................................................................................................................................2520.50100000000001000000
..................................................AAT-------AGTATGT---------------TACAGGC..................................................................................................................................................................................................1720.50100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................3120.50100000010000000000
..................................................AAT-------AGTATGT---------------TACAGGCAG................................................................................................................................................................................................1920.50100000000001000000
..............................................GTTGAAT-------AGTATGT---------------TACAGGCAGAAG.............................................................................................................................................................................................2620.50100000000001000000
..............................................GTTGAAT-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................2420.50100000000001000000
....................................................T-------AGTATGT---------------TACAGGCAGAAGGAA..........................................................................................................................................................................................2320.50100000000000010000
..............................................GTTGAAT-------AGTATGT---------------T........................................................................................................................................................................................................1520.50100000000001000000
................................................................................................AGCGTTTCCGACCATATAAAGTACA..................................................................................................................................................................2530.33100000000000001000
............................AAGGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................................................................................2460.33200000020000000000
..................................................................T---------------TACAGGCAGAAGGAAGCGTTTA...................................................................................................................................................................................2330.33100000000000010000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGCAGG...............................................................................................................................................................................................2730.33100100000000000000
.........................GTAAAGGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................................................................................2730.33100000001000000000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGTA.....................................................................................................................................................................................2530.33100000000001000000
..................................TATACTAGATTCGTTGAAT-------AGTAT..........................................................................................................................................................................................................................2430.33100000000001000000
..................................................................T---------------TACAGGCAGAAGGA...........................................................................................................................................................................................1530.33100000000001000000
....................................TACTAGATTCGTTGAAT-------A..............................................................................................................................................................................................................................1870.29201000000001000000
..................................TATACTAGATTCGTTGAAT-------A..............................................................................................................................................................................................................................2040.25100000000001000000
...........................AAAGGGGTATACTAGATTCGTTGAT.......................................................................................................................................................................................................................................2540.25100000000001000000
...........................AAAGGGGTATACTAGATTCGT...........................................................................................................................................................................................................................................2140.25100000000001000000
..........................TAAAGGGGTATACTAGATTCGTTGAT.......................................................................................................................................................................................................................................2640.25100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------TACAGGT..................................................................................................................................................................................................2440.25100000000000010000
............TCGTA------TAGTAAAGGG..........................................................................................................................................................................................................................................................1550.20100000000001000000
....TTA-C---TCGTA------TAGTAAAGGG..........................................................................................................................................................................................................................................................1950.20100000000001000000
..............................................................TATGT---------------TACAGGCAGA...............................................................................................................................................................................................1550.20100000000001000000
....TTA-C---TCGTA------TAGTAAAGG...........................................................................................................................................................................................................................................................1850.20100000000001000000
.............................AGGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................................................................................2360.17100000010000000000
...................................ATACTAGATTCGTTGAAT-------AG.............................................................................................................................................................................................................................2060.17101000000000000000
............................AAGGGGTATACTAGATTCGTTGA........................................................................................................................................................................................................................................2360.17100000000000010000
.............................AGGGGTATACTAGATTCGTTG.........................................................................................................................................................................................................................................2170.14100000000000010000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGA......................................................................................................................................................................................2470.14100000000001000000
............................AAGGGGTATACTAGATTCGTTG.........................................................................................................................................................................................................................................2270.14100000000001000000
....................................TACTAGATTCGTTGAAT-------AG.............................................................................................................................................................................................................................1970.14100000000001000000
..............................................................TATGT---------------TACAGGCAGAAGGAAGCGTTTT...................................................................................................................................................................................2770.14100000000001000000
....................................TACTAGATTCGTTGAAT-------AGT............................................................................................................................................................................................................................2070.14100000000001000000
...................................ATACTAGATTCGTTGAAT-------...............................................................................................................................................................................................................................1890.11101000000000000000
...................................ATACTAGATTCGTTGAAT-------AGG............................................................................................................................................................................................................................2190.11100100000000000000
....................................TACTAGATTCGTTGAAT-------...............................................................................................................................................................................................................................17100.10100000000001000000
.................................................................GT---------------TACAGGCAGAAGGAAGT........................................................................................................................................................................................19100.10100000000001000000
............................AAGGGGTATACTAGATTCGTTT.........................................................................................................................................................................................................................................22110.09100000000000010000
..................................................................T---------------TACAGGCAGAAGGAAGCGTTTCCGAT...............................................................................................................................................................................27110.09100000000001000000
...........................................TTCGTTGAAT-------AGTATGT---------------.........................................................................................................................................................................................................17120.08100000000001000000
..........................TAAAGGGGTATACTAGATTCGTTGTT.......................................................................................................................................................................................................................................26130.08100000000000010000
........................................AGATTCGTTGAAT-------AGTA...........................................................................................................................................................................................................................17140.07100000000001000000
...........................AAAGGGGTATACTAGA................................................................................................................................................................................................................................................16150.07100000000001000000
...................................................................................ACAGGCAGAAGGAAGCGTTTCCGACC..............................................................................................................................................................................26200.05100000000001000000
.....................................................................................AGGCAGAAGGAAGCGTTTCCGACC..............................................................................................................................................................................24200.05100000000001000000
droSec2
CCCATTA-C---TCGTA------TAGTAAAGGGGTATACTAGATTCGTTGATA-------AGTATGT---------------TACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTACATC--AT----------------------------------------------------------------TAAGTATTT------ACCATAGGATTA---ATA----------------------------AAAAAAA-A-------------TTTATTTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................TTCGTTGATA-------AGTATGT---------------TACAGGC..................................................................................................................................................................................................24118.00189081
...........................................TTCGTTGATA-------AGTATGT---------------TACAGGCAGA...............................................................................................................................................................................................2714.0044000
...ATTA-C---TCGTA------TAGTAAAGGGGT........................................................................................................................................................................................................................................................2213.0030030
...........................................TTCGTTGATA-------AGTATGT---------------TACAGGCA.................................................................................................................................................................................................2512.0022000
........C---TCGTA------TAGTAAAGGGGT........................................................................................................................................................................................................................................................1812.0022000
...........................................TTCGTTGATA-------AGTATGT---------------TACAG....................................................................................................................................................................................................2212.0022000
...........................................TTCGTTGATA-------AGTATGT---------------TACAGG...................................................................................................................................................................................................2312.0022000
......A-C---TCGTA------TAGTAAAGGGGT........................................................................................................................................................................................................................................................1911.0010100
...........................................TTCGTTGATA-------AGTATGT---------------TACAGGCAGT...............................................................................................................................................................................................2711.0011000
......A-C---TCGTA------TAGTAAAGGGGTATACTAG.................................................................................................................................................................................................................................................2611.0010100
.....TA-C---TCGTA------TAGTAAAGGGGTA.......................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................ATTT------ACCATAGGATTA---ATA----------------------------...............................1911.0011000
............TCGTA------TAGTAAAGGGGTA.......................................................................................................................................................................................................................................................1811.0011000
...........................................TTCGTTGATA-------AGTATGT---------------TACAGGA..................................................................................................................................................................................................2411.0011000
.................................................GATA-------AGTATGT---------------TACAGGCAGAAGGA...........................................................................................................................................................................................2511.0010100
...........................AAAGGGGTATACTAGATTCGTT..........................................................................................................................................................................................................................................2230.6721100
...........................AAAGGGGTATACTAGATTCGTTG.........................................................................................................................................................................................................................................2320.5010100
...........................AAAGGGGTATACTAGATTCGTTGA........................................................................................................................................................................................................................................2420.5010100
....................................................A-------AGTATGT---------------TACAGGCAGAAGGAAGC........................................................................................................................................................................................2520.5010010
...........................................TTCGTTGATA-------AGTATGT---------------TACAGGG..................................................................................................................................................................................................2420.5011000
...................................ATACTAGATTCGTTGATA-------AGT............................................................................................................................................................................................................................2150.4020110
................................................................................................AGCGTTTCCGACCATATAAAGTACA..................................................................................................................................................................2530.3311000
...........................AAAGGGGTATACTAGATTCGT...........................................................................................................................................................................................................................................2130.3310100
.....................................ACTAGATTCGTTGATA-------AGTAT..........................................................................................................................................................................................................................2150.2010100
.................................GTATACTAGATTCGTTGATA-------AGT............................................................................................................................................................................................................................2350.2011000
..................................................................................TACAGGCAGAAGGAAGCGTTT....................................................................................................................................................................................2160.1710001
droYak3
CCCGTTA-C---TCGTA------GAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGT---------------AACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATAAT----------------------------------------------------------------AAACTTTTTTG----GTGATAGATTTA---ATG----------------------------AAAAAAA-A-------------TATATTTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................AAGGGTATACTAGATTCGTTG.........................................................................................................................................................................................................................................21200.20404000000000
..............GTA------GAGTAAAAGGGTATACT...................................................................................................................................................................................................................................................20200.20404000000000
......................................................................................................TCCGACCATATAAAGTATATATAAT----------------------------------------------------------------A...........................................................................................26190.05101000000000
..............................................................................................................................T----------------------------------------------------------------AAACTTTTTTG----GTGATAGATTTA---ATG----------------------------...............................27200.05101000000000
............TCGTA------GAGTAAAAGGGTATACTAGATTCG............................................................................................................................................................................................................................................29200.05100100000000
....................................TACTAGATTCGTTGAAA-------AGTATGT---------------AACA.....................................................................................................................................................................................................28200.05101000000000
.............................AAGGGTATACTAGATTCGTTGAAA-------AGTAT..........................................................................................................................................................................................................................29200.05100000010000
droEre2
CCCGTTA-C---TCGTA------GAGTTAAAGGGTATACTAGATTCGTTGAGTATGT---AATATGT---------------AACAAGCAGAAGGAAACGTTTCCGACCATATAAAATATCTATAATT----------------------------------------------------------------ACACGTTCATAATATCCATATG-------TCA---------------AA-----------AAAAAAT-A-------------ATTTTTTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GTTAAAGGGTATACTAGATTCGTTGA........................................................................................................................................................................................................................................2670.1410000010

Generated: 05/15/2015 at 03:07 PM