ID:

dpe_28

 Coordinate:

scaffold_4:3375451-3375526 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.8 -33.7 -33.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTTTTCCCAGCTCTAAACGACCTCCAGCAAAACTTCGCCGCAGCACTGTGGGGCCTCTGCAGAGTGGAAGCGGAGACGTACTACTCTCTTTGTTCTTAGAGTTTTCACCTGTTAGAAGCTCTACTGTACTTGCAGACTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTCTA

***********************************.....((((.((.(((((((.(((((((.(((((((((((((........)))))...........))))))))))).)))).))))))).)).)).))......************************************ 		Read size # Mismatch Hit Count Total Norm Total V057

head

 M021

embryo

 V050

head

 M042

female body

 V111

male body		 V042

embryo
.......................................................................................................TTTCACCTGTTAGAGGCTCTAC................................................... 22 1 1 2120.00 2120 1154 251 488 162 64 1
.......................................................................................................TTTCACCTGTTAGAAGCTCTAC................................................... 22 0 1 1061.00 1061 118 843 47 37 15 1
.......................................................................................................TTTCACCTGTTAGAGGCTCT..................................................... 20 1 1 923.00 923 595 2 287 26 13 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTA.................................................... 21 1 1 912.00 912 583 0 259 38 32 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACC.................................................. 23 1 1 249.00 249 11 222 7 6 2 1
.......................................................................................................TTTCACCTGTTAGAGGCTCTACC.................................................. 23 2 1 201.00 201 92 31 59 13 6 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTAA................................................... 22 2 1 101.00 101 47 11 29 5 9 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTA.................................................... 21 0 1 101.00 101 38 16 32 9 6 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTAT................................................... 22 2 1 94.00 94 70 1 19 2 2 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTCC................................................... 22 2 1 79.00 79 59 0 20 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTACT.................................................. 23 1 1 77.00 77 37 4 29 7 0 0
..................................................GGGGCCTCTGCAGAGTGGAAGC........................................................................................................ 22 0 1 69.00 69 21 0 18 4 25 1
.......................................................................................................TTTCACCTGTTAGAAGCTCT..................................................... 20 0 1 69.00 69 34 16 8 5 6 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTACA.................................................. 23 2 1 50.00 50 21 13 10 6 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTTC................................................... 22 2 1 49.00 49 44 0 5 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACA.................................................. 23 1 1 38.00 38 4 32 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACT.................................................. 23 0 1 33.00 33 2 25 2 2 1 1
.......................................................................................................TTTCACCTGTTAGAGGCTCCAC................................................... 22 2 1 33.00 33 23 0 10 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTT.................................................... 21 2 1 30.00 30 21 0 8 1 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTAA................................................... 22 1 1 24.00 24 3 16 2 0 3 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTACCA................................................. 24 3 1 22.00 22 12 0 4 4 2 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTTT................................................... 22 3 3 14.00 42 31 1 9 0 1 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTAT................................................... 22 1 1 12.00 12 1 8 1 1 1 0
........................................................................................................TTCACCTGTTAGAGGCTCTAC................................................... 21 1 1 12.00 12 0 0 1 10 1 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACCA................................................. 24 2 1 10.00 10 0 7 1 1 1 0
........................................................................................................TTCACCTGTTAGAAGCTCTAC................................................... 21 0 1 9.00 9 0 0 0 9 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTAG................................................... 22 2 1 9.00 9 8 0 1 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCTA.................................................... 20 1 1 9.00 9 0 0 1 7 1 0
.......................................................................................................TTTCACCTGTTAGAGGCTCCTC................................................... 22 3 2 8.50 17 14 0 3 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAAG......................................................................................................... 21 0 1 8.00 8 3 0 1 2 2 0
.......................................................................................................TTTCACCTGTTAGAGGCTCGAC................................................... 22 2 1 8.00 8 8 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGTCTCTA.................................................... 21 2 1 8.00 8 6 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCC..................................................... 20 2 1 7.00 7 4 0 3 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTC.................................................... 21 2 1 7.00 7 6 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCCCC................................................... 22 3 1 7.00 7 5 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTGC................................................... 22 2 1 7.00 7 7 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGTCTCTAC................................................... 22 2 1 7.00 7 3 2 2 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTAC................................................... 22 2 1 6.00 6 6 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGACGCTCTAC................................................... 22 1 1 6.00 6 4 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAATCTCTAC................................................... 22 1 1 6.00 6 1 4 1 0 0 0
.......................................................................................................TTTCACCTGCTAGAGGCTCTAC................................................... 22 2 1 6.00 6 5 0 1 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCT..................................................... 20 2 1 6.00 6 4 0 2 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTTC................................................... 22 3 1 6.00 6 6 0 0 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAA.......................................................................................................... 20 0 1 5.00 5 2 0 0 1 2 0
..................................................GGGGCCTCTGCAGAGTGGA........................................................................................................... 19 0 1 5.00 5 4 0 0 0 1 0
.......................................................................................................TGTCACCTGTTAGAGGCTCT..................................................... 20 2 1 5.00 5 5 0 0 0 0 0
.......................................................................................................CTTCACCTGTTAGAGGCTCT..................................................... 20 2 1 5.00 5 4 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTATT.................................................. 23 2 1 5.00 5 5 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCTACC.................................................. 22 2 1 5.00 5 0 1 1 0 3 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTG.................................................... 21 2 1 5.00 5 3 0 1 1 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTTA................................................... 22 3 1 5.00 5 2 0 3 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTCA................................................... 22 3 1 4.00 4 2 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGCGGCTCTAC................................................... 22 2 1 4.00 4 4 0 0 0 0 0
.......................................................................................................TTTCCCCTGTTAGAGGCTCT..................................................... 20 2 1 4.00 4 4 0 0 0 0 0
.......................................................................................................TTTCACCTGTTCGAGGCTCTAC................................................... 22 2 1 4.00 4 4 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTTT................................................... 22 2 1 4.00 4 2 0 0 1 1 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACG.................................................. 23 1 1 4.00 4 1 3 0 0 0 0
.......................................................................................................TTTCACCTGTTAGGGGCTCTAC................................................... 22 2 1 4.00 4 3 0 1 0 0 0
.......................................................................................................CTTCACCTGTTAGAGGCTCTAC................................................... 22 2 1 4.00 4 3 0 0 0 1 0
.......................................................................................................TTTAACCTGTTAGAGGCTCTAC................................................... 22 2 1 4.00 4 4 0 0 0 0 0
.......................................................................................................TTTCACCTGTGAGAGGCTCTAC................................................... 22 2 1 4.00 4 4 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCT....................................................... 18 1 1 4.00 4 1 0 2 0 1 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTCCC.................................................. 23 3 1 4.00 4 3 0 1 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCTACCA................................................. 23 3 1 4.00 4 0 0 0 4 0 0
.......................................................................................................TTTCACCTGTTAAAAGCTCTAC................................................... 22 1 1 4.00 4 0 4 0 0 0 0
....................................................................................................AGTTTTCACCTGTTAGAGGCTCT..................................................... 23 1 1 4.00 4 1 3 0 0 0 0
.......................................................................................................TTTCACCTGTTAAAGGCTCTAC................................................... 22 2 1 3.00 3 2 1 0 0 0 0
.......................................................................................................TTTCACGTGTTAGAGGCTCT..................................................... 20 2 1 3.00 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTACG.................................................. 23 2 1 3.00 3 1 2 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGCCTCTAC................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCCAA................................................... 22 3 1 3.00 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTGGTAGAGGCTCTA.................................................... 21 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................CTTCACCTGTTAGAGGCTCTA.................................................... 21 2 1 3.00 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTTTTAGAGGCTCTAC................................................... 22 2 1 3.00 3 1 0 0 2 0 0
.......................................................................................................TTTCACTTGTTAGAGGCTCTAC................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGTTCTAC................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGACTCTAC................................................... 22 2 1 3.00 3 1 0 1 1 0 0
.......................................................................................................TTTCACCTGCTAGAGGCTCT..................................................... 20 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAAAAGCTCTACA.................................................. 23 2 1 3.00 3 0 3 0 0 0 0
.......................................................................................................TTTCGCCTGTTAGAGGCTCTAC................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGATGCTCT..................................................... 20 1 1 3.00 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTGTTACAGGCTCT..................................................... 20 2 1 3.00 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTCCT.................................................. 23 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGATCTA.................................................... 21 2 1 3.00 3 1 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTTCC.................................................. 23 3 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCCAC................................................... 22 1 1 3.00 3 2 1 0 0 0 0
.......................................................................................................TCTCACCTGTTAGAGGCTCTAC................................................... 22 2 1 3.00 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCT....................................................... 18 0 1 3.00 3 0 2 1 0 0 0
.......................................................................................................TGTCACCTGTTAGAGGCTCTAC................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCCA.................................................... 21 2 1 3.00 3 1 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCCCT..................................................... 20 2 1 2.00 2 1 0 1 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAAGCGGA..................................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0
.......................................................................................................TTTCACCGGTTAGAGGCTCT..................................................... 20 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGATCTAC................................................... 22 1 1 2.00 2 1 1 0 0 0 0
.......................................................................................................TTTCACCTGATAGAGGCTCT..................................................... 20 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCCACC.................................................. 23 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTACCC................................................. 24 3 1 2.00 2 2 0 0 0 0 0
......................................................................................................TTTTCACCTGTTAGAGGCTCTACC.................................................. 24 2 1 2.00 2 1 0 0 0 0 1
.......................................................................................................TTTCACCTGTTAGCAGCTCTAC................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTACC.................................................. 23 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCGCCTGTTAGAGGCTCT..................................................... 20 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTACAGCCTCTAC................................................... 22 3 1 2.00 2 2 0 0 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAAGCGGAG.................................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0
.......................................................................................................TTTCCCCTGTTAGAAGCTCTAC................................................... 22 1 1 2.00 2 0 0 2 0 0 0
.......................................................................................................TTTCACCTGTTATAAGCTCTA.................................................... 21 1 1 2.00 2 0 0 2 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACTT................................................. 24 1 1 2.00 2 0 2 0 0 0 0
..................................................GGGGCCTCTGCAGAGTGGCAGC........................................................................................................ 22 1 1 2.00 2 1 0 0 0 0 1
.......................................................................................................TTTCACCTGTTAGAAGCTCTT.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCGCCTGTTAGAAGCTCTACC.................................................. 23 2 1 2.00 2 0 2 0 0 0 0
.......................................................................................................TTTCACCTGTCAGAGGCTCTAC................................................... 22 2 1 2.00 2 1 0 1 0 0 0
.......................................................................................................TTTCACCTGGTAGAGGCTCT..................................................... 20 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCAGCTGTTAGAGGCTCTA.................................................... 21 2 1 2.00 2 1 0 1 0 0 0
.......................................................................................................TTTCACCTGCTAGAGGCTCTA.................................................... 21 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCCGTTAGAGGCTCTA.................................................... 21 2 1 2.00 2 2 0 0 0 0 0
......................................................................................................CTTTCACCTGTTAGAGGCTCTAC................................................... 23 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGGTAGAAGCTCTAC................................................... 22 1 1 2.00 2 1 1 0 0 0 0
.......................................................................................................TTTCACCTGGTAGAGGCTCTAC................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGGTAGAAGCTCTACT.................................................. 23 1 1 2.00 2 1 1 0 0 0 0
.......................................................................................................TTTCACAGGTTAGAGGCTCTAC................................................... 22 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGTGGCTCTCC................................................... 22 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACCT................................................. 24 2 1 2.00 2 0 2 0 0 0 0
.......................................................................................................TTTCACCTCTTAGAGGCTCT..................................................... 20 2 1 2.00 2 0 0 0 2 0 0
.......................................................................................................TTTCACCTGGTAGAGGCTCTG.................................................... 21 3 1 2.00 2 2 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAAGCTCTA.................................................... 20 0 1 2.00 2 1 0 0 1 0 0
.........................................................................................................TCACCTGTTAGAGGCTCTAC................................................... 20 1 1 2.00 2 0 0 1 1 0 0
.......................................................................................................TTTCACCTGTTAGAGTCTCT..................................................... 20 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTTCT.................................................. 23 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCGGTTAGAGGCTCTCC................................................... 22 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................CTTCACCTGTTAGAAGCTCTAC................................................... 22 1 1 2.00 2 0 2 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGCCTCTA.................................................... 21 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCAGCTGTTAGAGGCTCTAC................................................... 22 2 1 2.00 2 1 0 1 0 0 0
.......................................................................................................ATTCACCTGTTAGAGGCTCTAC................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTTGAGGCTCTAC................................................... 22 2 1 2.00 2 1 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTCT................................................... 22 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTGACCTGTTAGAGGCTCTAC................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGATCTAC................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGATAGAGGCTCTAC................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCGGTTAGAGGCTCTGC................................................... 22 3 1 2.00 2 2 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCTAA................................................... 21 2 1 2.00 2 0 2 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGATCT..................................................... 20 2 1 2.00 2 2 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCTACT.................................................. 22 1 1 2.00 2 0 2 0 0 0 0
.......................................................................................................TTTCACCTATTAGAGGCTCTA.................................................... 21 2 1 2.00 2 1 0 0 1 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTC...................................................... 19 0 1 2.00 2 1 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTAAA.................................................. 23 3 3 1.67 5 1 0 3 1 0 0
.......................................................................................................TTGCACCTGTTAGAGGCTCT..................................................... 20 2 3 1.67 5 5 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCGTC................................................... 22 3 2 1.50 3 3 0 0 0 0 0
.......................................................................................................TTGCACCTGTTAGAGGCTCTAC................................................... 22 2 2 1.50 3 3 0 0 0 0 0
.......................................................................................................TTCCACCTGTTAGAGGCTCTA.................................................... 21 2 2 1.50 3 3 0 0 0 0 0
.......................................................................................................TTGCACCTGTTAGAGGCTCTA.................................................... 21 2 2 1.50 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCGA.................................................... 21 2 2 1.50 3 2 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTTTT.................................................. 23 3 2 1.50 3 3 0 0 0 0 0
.......................................................................................................TTTCACCTTTTAGAGGCTCTTC................................................... 22 3 3 1.33 4 4 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGATCTGCT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGACGCTCTGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACAA................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTAAGAGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGACTCTCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTACAGGCTCTAA................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GTTCACCTGTAAGAAGCTCTTC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTACATTCTCTAC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGATAGAAGCTCTACC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCGCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCATCTGTTAGAGGCTCTACT.................................................. 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGATCTGC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCCCCTGTTAGAGGCTCTAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAAGCG....................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTCC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACGTGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTGATAGGCTCTAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTACACCTGCTAGAGGCTCTAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TATCACCTGGTAGAGGCTCTAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTAAC.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGGAGCTCTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTCCACCTGTTAGACGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTACACCTGTTAGAGGCTCTAT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCCCCTGTTACAGGCTCTAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCCCTAC................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TATCACCTGTTAGAGGCTCCAC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGACGCTCCAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTCGAGGCTCTCC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGACTCTA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTTAAGGCTCTAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCTCC................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..................................................GGGGCCTCTGCAGAGTGTAAGC........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAACCTCTAC................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTTTTAGAAGCTCTA.................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..................................................GGGGCCTCTGCAGAGTGGAAAC........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAAGCGGAGA................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0
.......................................................................................................TTTCACCTGTTATAAGCTCTAC................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGTCTCTTC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTACAGGCTCTTC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTATTAGAGGCTCTAC................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCACCTTTTAGAGGCTCTA.................................................... 21 2 2 1.00 2 1 0 0 1 0 0
.......................................................................................................TTTCTCCTGTTAGAGGCTCTAT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTC...................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGCTAGAGGCTCTAT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TATCACCTGTTAGAAGCTCTACC.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCATCTGTTAGAGGCTCTACC.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCGCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGCGGCTCTCCT.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTCCACCTGTTAGAGGCTCTCC................................................... 22 3 2 1.00 2 1 0 1 0 0 0
.......................................................................................................TTTCACCCGTTAGAAGCTCTACC.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGATCTTC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAAAAGCTCTACC.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCCACT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGGCCTCTGCGGAGTGGAAGC........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTGACCTGTTAGAGGCTCTCC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACATGTGAGAGGCTCTA.................................................... 21 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAAGCTCTACT.................................................. 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTT.................................................... 21 3 2 1.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGACTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACTTGTTAGAAGCTCTGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGCTAGAAGCTCTAT................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTAGATGCTCTTC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.....................................................GCCTCTGCAGAGTGGAAGT........................................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0
.......................................................................................................TTTCACCTGTTAGAGGGTCTAC................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.......................................................................................................TTTCACCTGTTAGGAGCTCTACC.................................................. 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGCTAGAGGCTCGAC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................GTTCACCTGTTAGAGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGTTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGATGCTCCAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGCACCTGTTAGAAGCTCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCAGCTGTTAGAAGCGCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCCCCTGTTAGAGGCTCTT.................................................... 21 3 1 1.00 1 1 0 0 0 0 0
...................................................GGGCCTCTGCAGAGTGGAAG......................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCATCTGTTAGAGGCTCTCC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCCCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTCCACCTTTTAGAAGCTCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTGACCTGTTAGAGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTGCACCTGTTAGAAGCTCTAC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGGCCTCTGCAGAGTGGAAA......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................CACCTGTTAGAGGCTCTACT.................................................. 20 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTAT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCCGTTAGAAGCTCTACT.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTCCACCTGTTAGAAGCTCTAC................................................... 22 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................AGTTTTCACCTGTTATAGGCTCT..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTAACCTGTTAGAGGCTCTAT................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTACAGGCTCTAG................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGTCTCTACC.................................................. 23 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCG..................................................... 20 2 2 1.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTATAAGCTCGTC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCGCTAC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCGCCTGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGATAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCCGTTAGAGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCCCTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGGGGCTCT..................................................... 20 2 2 1.00 2 2 0 0 0 0 0
......................................................................................................GTTTCACCTGTTAGAGGCTCTAC................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCACCTATTAGAAGCTCTAC................................................... 22 1 1 1.00 1 0 0 0 1 0 0
......................................................................................................TTTTCACCTGTTAGAGGCTCTAC................................................... 23 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCACCTGCTAGAGGCTCTGC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACATGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACATGTTAGAGGCTCTGC................................................... 22 3 2 1.00 2 2 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAAACGCTCTCC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACCC................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTAGCGGCTCTTC................................................... 22 3 2 1.00 2 2 0 0 0 0 0
.......................................................................................................TTTTACCTGTTAGAGGCTCTACC.................................................. 23 3 1 1.00 1 0 0 1 0 0 0
..................................................GCGGCCTCTGCAGAGTGGAA.......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTCGAGGCTCTA.................................................... 21 2 2 1.00 2 2 0 0 0 0 0
.......................................................................................................TCTCACCTGTTAGAAGCTCTAC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGCTAGAAGCTCTACC.................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCGGTTAGAGGCTCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTCTTAGACCCTCTAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTCTTAGAGGCTCTAC................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCACCTGTTAGATGCTCTACC.................................................. 23 2 1 1.00 1 0 0 0 1 0 0
..................................................GGGGGCTCTGCAGAGTGGAAGC........................................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
.......................................................................................................TTTCACCTGTGATAGGCTCTA.................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTTACCTGTTAGAAGCTCT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTCGATGCTCTCC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCGCCTGTTAGAGGCTCTACC.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTACAGGCTCGAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTTTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TCTCACCTGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGATCTACT.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTCACCTGTTAGACCCTCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................CTTTCACCTGTTAGAAGCTCTAA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................TTTTACCTGTTAGAGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACATGTTAGAGGCTCTAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCGAC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................TGGCAGAGTGGTTATTTGCTGT........................ 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGTCACCTGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGTGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACATGTTAGAGGCTCCAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTAACCTGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTATAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................TTCACCTGTTAGAGGCTCT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGGCCTCTGAAGAGTGCAAGC........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACCAAA............................................... 26 3 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTCG................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTACAC................................................. 24 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TCTCACCTGTTAGAGGCTCT..................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCGCCTATTAGAGGCTCTA.................................................... 21 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTTTAT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGAGGCTCTGT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.................................................TGGGGCCTCTGCAGAGTGGCAGC........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTAGCAGCGCCAC................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTCCACCTGTTAGAAGCTCTACA.................................................. 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TTTCACCTGTTAGAAGCTCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTCACCTGTTGGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTGACCTGTTAGAGGCTCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTTAACCTGTTAGAAGCTCTAC................................................... 22 1 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

GCAAAAGGGTCGAGATTTGCTGGAGGTCGTTTTGAAGCGGCGTCGTGACACCCCGGAGACGTCTCACCTTCGCCTCTGCATGATGAGAGAAACAAGAATCTCAAAAGTGGACAATCTTCGAGATGACATGAACGTCTGAACAATAAACGACAAAACACTTTAAAATAACGAGAGAT

************************************.....((((.((.(((((((.(((((((.(((((((((((((........)))))...........))))))))))).)))).))))))).)).)).))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V057

head

 M042

female body
.................................................................................................................ATCTTAGAGATGACAAGAAC........................................... 20 2 1 1.00 1 1 0
.........TCGTGATTTGCTATAGGTCGT.................................................................................................................................................. 21 3 4 0.25 1 0 1
.............................................................................................................................................................CGTTAATATAACGAGAGA. 18 2 13 0.08 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_4:3375401-3375576 - dpe_28 confident CGTTTTCCCAGCTCTAAACGACCTCCAGC-AAAACTTCGCCGCAG----------------CACTGTGGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGACGTACTACTCTCTTTGTTCTTAGAGTTTTC-------------------ACCTGTTAGAAGC-TCTACTGT------AC-TT-G--CAGA--CTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTCTA---
dp5 3:15677949-15678124 + dps_9 confident CGTTTTCCCAGCTCTAAACGACCTCCAGC-AAAACTTCGCCGCAG----------------CACTGTGGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGACGTGCTACTCTCTTTGTTCTTAGAGTTTTC-------------------ACCTGTTAGAAGC-TCTACTGT------AC-TT-G--CAGA--CTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTCTA---
droWil2 scf2_1100000004510:1723387-1723483 + CTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA-------------------TCCCTATTAGATTAA------ACGAGTTTTCACTGTAATTGTTATTT-G--CTCGCATTTCTTAT-GGCTGTTTTGGTGAATTTTATTGCTCTGGT-TA
droVir3 scaffold_13049:2825042-2825061 - TGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTC------AC-CT-A--CAAAC-------------------------------------------
droMoj3 scaffold_6680:3950063-3950103 + CTTTATCTCTGCTTGAAGTGACCTACATACA-AGCT-----GCAG----------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---
droGri2 scaffold_8697:3438-3524 + GGCTTTCGCTTTTGTGAACGGG---------ACACTTTGCTG------------------------------CTGT-----GAAA-------------------------------------------------------------------------------------------------AATGAAAGTGAACCCAAACTGCCAGCATTACTGTCTGCATTTTG---------------------------------------------------------------------------------------------------AC---
droAna3 scaffold_13266:5219670-5219936 + CGCTCTTC-TACTCTAAACGACCTCCAA-CA-AACTTCGCCGCAATCATTTCAGCAGCTGCCACAGTGAAGCTTCT-----ATAACGGTTCTATTATCCCAAAGCCTCTCTCTCTCCTCCCATCTCTTTTAATTTCTCTGAAACTTCTTGGTTATTTTTATTTTAATGTCCTTTTTATGAAAAAAATAAATATCTTT------------------------------GATCC-------------TT-CAGTAGAAGAGTTTACTGT------TA-TA-GCCCCGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCCTGG---
droBip1 scf7180000395751:1007223-1007461 + TC-------TACTCTAAACGACCTCCAA-CA-AACTTCGCCACAATCATTTCAGCAGCTGCCACAGTGAAGCTCCTTTGGTAGAACAG------GATTCTAAAGCCCCACTCGC------------CACAGATTTCTCTGAAACTTCAAAGATACTTGTATTTCAATGTCCTTTCTATAAAG---------T---------------------TCAA---------AGGTCC-------------TTCCATAGCTGGAGTTTACTGT------CC-TTAG--CCGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCCTGC---
droKik1 scf7180000302411:659527-659589 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGT------TC-CT-GGGCAGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGGCGG
droFic1 scf7180000453201:166953-167027 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------ACCAACTGGCAGTGTTTACTGT------TC-TC-G--TAGTTATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---
droEle1 scf7180000491201:1733985-1734059 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------ACCCATTGGCAGTGTTTACTGT------TC-TT-T--CAGACATTTGTTATTTGCTATTTTGTGAAATTTTATTGCTCTTGG---
droRho1 scf7180000780066:359433-359499 + C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTGGCAGTATTTACTGT------TC-GT-T------CATTTGTTATTTGCTGTTTGGGAAATTTTTATTGCTCTTGG---
droBia1 scf7180000302143:985189-985246 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGT------GC-CT-G--TCGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---
droTak1 scf7180000415722:326825-326899 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-TT-G--CAGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---
droEug1 scf7180000409474:541747-541832 - GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAT-------TGGTTT-------------CCCTATTGACAGTGCTTACTGT------TC-CT-G--CAGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---
dm3 chr2R:17391051-17391125 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---
droSim2 2r:17945126-17945200 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---
droSec2 scaffold_9:720760-720834 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGACAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---
droYak3 2R:11788741-11788815 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTCTGAAATTTTATTGCTTCTAG---
droEre2 scaffold_4845:11536011-11536085 + TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATAGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CGTTTTCCCAGCTCTAAACGACCTCCAGC-AAAACTTCGCCGCAG----------------CACTGTGGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGACGTACTACTCTCTTTGTTCTTAGAGTTTTC-------------------ACCTGTTAGAAGC-TCTACTGT------AC-TT-G--CAGA--CTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTCTA---SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTAC..................................................................2211061.0010618433714711815
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACC.................................................................231249.00249222617112
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTA...................................................................211101.00101169032386
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGC...........................................................................................................................................22169.0069041182125
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCT....................................................................20169.006916508346
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACA.................................................................23138.00383200240
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACT.................................................................23133.00332521221
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTAA..................................................................22124.00241600233
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTAT..................................................................22112.0012810111
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACCA................................................................24110.0010710101
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTAC..................................................................2119.009090000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAG............................................................................................................................................2118.008020132
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAA.............................................................................................................................................2015.005010022
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGA..............................................................................................................................................1915.005000041
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTTT..................................................................2214.004010021
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACG.................................................................2314.004300010
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-T......................................................................1813.003200100
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGA........................................................................................................................................2512.002000002
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAG.......................................................................................................................................2612.002000002
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACTT................................................................2412.002200000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTT...................................................................2112.002000020
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACCT................................................................2412.002200000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTA...................................................................2012.002010010
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TC.....................................................................1912.002000110
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACAA................................................................2411.001100000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCG..........................................................................................................................................2311.001000010
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGA......................................................................................................................................2711.001000001
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTACT.................................................................2211.001100000
......................................................................GCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGT...........................................................................................................................................1911.001000001
....................................................................GGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAG............................................................................................................................................2011.001010000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAA............................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACCC................................................................2411.001100000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACAC................................................................2411.001000100
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTC...................................................................2111.001000010
dp5
CGTTTTCCCAGCTCTAAACGACCTCCAGC-AAAACTTCGCCGCAG----------------CACTGTGGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGACGTGCTACTCTCTTTGTTCTTAGAGTTTTC-------------------ACCTGTTAGAAGC-TCTACTGT------AC-TT-G--CAGA--CTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTCTA---SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTAC..................................................................221507.0050745185286943934112567
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTA...................................................................21176.0076247340146000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCT....................................................................20166.006661801201513020
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGC...........................................................................................................................................22151.005102029396002
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACC.................................................................23148.0048315411244203
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTAC..................................................................21123.002302300000000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACT.................................................................23115.00150824010000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTAA..................................................................22115.00152601312000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACA.................................................................23111.00112601010001
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACCA................................................................2418.0080800000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGAC.....................................................................................................................................2818.0080008000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAG............................................................................................................................................2115.0050500000000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTTT..................................................................2214.0040201010000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCT....................................................................1914.0040400000000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTA...................................................................2014.0040400000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAA.............................................................................................................................................2013.0030100011000
....................................................................GGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGC...........................................................................................................................................2112.0020200000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGA..............................................................................................................................................1912.0020200000000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCC....................................................................2012.0020002000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGG...............................................................................................................................................1812.0020200000000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTACC.................................................................2212.0020200000000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTAT..................................................................2212.0020000101000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTT...................................................................2112.0020100001000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTAA..................................................................2111.0010100000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAA............................................................................................................................................2111.0010100000000
....................................................................GGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAG............................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................TC-------------------ACCTGTTAGAAGC-TCC....................................................................1811.0010001000000
................................................................................................................................................................................................................................TC-------------------ACCTGTTAGAAGC-TCTAC..................................................................2011.0010100000000
..............................AAAACTTCGCCGCAG----------------CACTGT.......................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTACCA................................................................2311.0010100000000
....................................................................................G-------------------------------------------------------------------------------------------------AGTGGAAGCGGAGACGTGCTACT.............................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTACA.................................................................2211.0010100000000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACCAA------.........................................................2511.0010100000000
..............................................................................................................................................................................................................................TTTC-------------------ACCTGTTAGAAGC-TCTACG.................................................................2311.0010100000000
........................................................................................................................................................................................................................TAGAGTTTTC-------------------ACCTGTTAGAAGC-TCTAC..................................................................2811.0010100000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGAAGCGGA........................................................................................................................................2511.0010001000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGT..............................................................................................................................................1911.0010000010000
...............................................................................................................................................................................................................................TTC-------------------ACCTGTTAGAAGC-TCTTT..................................................................2111.0010000001000
..........................................................................................................................................................................................................................GAGTTTTC-------------------ACCTGTTAGAAGC-TCTACCA................................................................2811.0010100000000
...................................................................GGGGCCTCT-----GCAG-------------------------------------------------------------------------------------------------AGTGGTTT............................................................................................................................................2130.3310100000000
droWil2
CTCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA-------------------TCCCTATTAGATTAA------ACGAGTTTTCACTGTAATTGTTATTT-G--CTCGCATTTCTTAT-GGCTGTTTTGGTGAATTTTATTGCTCTGGT-TASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................................................................................................................................................................CGCATTTCTTAT-GGCTGTTTTGGT.....................2411.00100010
............................................................................................................................................................................................................................................ATTAGATTAA------ACGAGTTTTCACT.................................................................2311.00100100
droVir3
TGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTC------AC-CT-A--CAAAC-------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
CTTTATCTCTGCTTGAAGTGACCTACATACA-AGCT-----GCAG----------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
GGCTTTCGCTTTTGTGAACGGG---------ACACTTTGCTG------------------------------CTGT-----GAAA-------------------------------------------------------------------------------------------------AATGAAAGTGAACCCAAACTGCCAGCATTACTGTCTGCATTTTG---------------------------------------------------------------------------------------------------AC---SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
CGCTCTTC-TACTCTAAACGACCTCCAA-CA-AACTTCGCCGCAATCATTTCAGCAGCTGCCACAGTGAAGCTTCT-----ATAACGGTTCTATTATCCCAAAGCCTCTCTCTCTCCTCCCATCTCTTTTAATTTCTCTGAAACTTCTTGGTTATTTTTATTTTAATGTCCTTTTTATGAAAAAAATAAATATCTTT------------------------------GATCC-------------TT-CAGTAGAAGAGTTTACTGT------TA-TA-GCCCCGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCCTGG---SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................GTTCTATTATCCCAAAGCCTCT.............................................................................................................................................................................................................................2211.001100000
........................................CGCAATCATTTCAGCAGC................................................................................................................................................................................................................................................................................1811.001010000
droBip1
TC-------TACTCTAAACGACCTCCAA-CA-AACTTCGCCACAATCATTTCAGCAGCTGCCACAGTGAAGCTCCTTTGGTAGAACAG------GATTCTAAAGCCCCACTCGC------------CACAGATTTCTCTGAAACTTCAAAGATACTTGTATTTCAATGTCCTTTCTATAAAG---------T---------------------TCAA---------AGGTCC-------------TTCCATAGCTGGAGTTTACTGT------CC-TTAG--CCGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCCTGC---SizeHit CountTotal NormTotal
No Reads
droKik1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGT------TC-CT-GGGCAGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGGCGGSizeHit CountTotal NormTotal
No Reads
droFic1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------ACCAACTGGCAGTGTTTACTGT------TC-TC-G--TAGTTATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---SizeHit CountTotal NormTotal
No Reads
droEle1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------ACCCATTGGCAGTGTTTACTGT------TC-TT-T--CAGACATTTGTTATTTGCTATTTTGTGAAATTTTATTGCTCTTGG---SizeHit CountTotal NormTotal
No Reads
droRho1
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTGGCAGTATTTACTGT------TC-GT-T------CATTTGTTATTTGCTGTTTGGGAAATTTTTATTGCTCTTGG---SizeHit CountTotal NormTotal
No Reads
droBia1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGT------GC-CT-G--TCGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---SizeHit CountTotal NormTotal
No Reads
droTak1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-TT-G--CAGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---SizeHit CountTotal NormTotal
No Reads
droEug1
GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAT-------TGGTTT-------------CCCTATTGACAGTGCTTACTGT------TC-CT-G--CAGACATTTGTTATTTGCTGTTTTGTGAAATTTTATTGCTCTTGG---SizeHit CountTotal NormTotal
No Reads
dm3
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTAC..................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................TATTGGCAGTGTTTACTGT------CG-......................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ATTGGCAGTGTTTACTGT------CG-A.....................................................2130.672000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
droSim2
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGACAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATTGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTCTGAAATTTTATTGCTTCTAG---SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droEre2
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------ACCTATAGGCAGTGTTTACTGT------TC-CT-G--CAGACATTTGTTATTCGCTGTTTTGTGAAATTTTATTGCTTCTAG---SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:45 PM