ID:

dpe_270

 Coordinate:

scaffold_26:695944-696006 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.9 -18.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_247:53939-53961 +
  2. scaffold_169:51077-51099 -
  3. scaffold_169:60624-60646 -
  4. scaffold_85:11930-11952 +
  5. dpe_270  scaffold_26:695945-695967 -
star

Sense Strand Reads

TAGTCTCGCCGCTACATGGGGTTTTGGAGTGAGGGGCTCTAAAACGGTGCTCTGAAAGGTTGGCTTCCTCTGGGGGTGAGTTAGCGCTGATGGCAGTTGAAGAGAAAGAGGAGAAAGCGATGACATTCGAACGTCATCCAGCGGATCCGACCGGTCTCATAGT
***********************************.((((..(((..((((.....(((((((((((((....))).)))))))).))...)))))))..)))).......................************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V111
male body		 M021
embryo
 V042
embryo
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGA................................................... 23 0 5 4.40 22 17 0 5 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCGGATC................ 27 0 3 2.67 8 7 0 0 0 1
........................................................................................................................TGACATTCGAACGTCATCCAGCGGATCC............... 28 0 3 2.33 7 4 0 0 3 0
.........................................................................................ATGGCAGTTGAAGAGAAAGAGG.................................................... 22 0 5 2.00 10 6 0 3 1 0
..................................................TCTGAAAGGTTGGCTTCCTCTGGG......................................................................................... 24 0 1 2.00 2 2 0 0 0 0
..................................................TCTGAAAGGTTGGCTTCCTCTGGGG........................................................................................ 25 0 1 2.00 2 2 0 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCGG................... 24 0 3 1.67 5 5 0 0 0 0
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAGA................................................. 25 0 5 1.20 6 6 0 0 0 0
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAG.................................................. 24 0 5 1.20 6 6 0 0 0 0
............TACATGGGGTTTTGGAGTGAGG................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
...............................................TGCTCTGAAAGGTTGGCTTCCTCTG........................................................................................... 25 0 1 1.00 1 1 0 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCGGAT................. 26 0 3 1.00 3 3 0 0 0 0
..................................................TCTGAAAGGTTGGCTTCCTCTGG.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0
TAGTCTCGCCGCTACATGGGGTTTT.......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................AGGGGTCGTGGAGTGAGGGGCT............................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCGGA.................. 25 0 3 1.00 3 3 0 0 0 0
................TAGGGTTGTGGAGTGAGGGCC.............................................................................................................................. 21 3 1 1.00 1 0 1 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCG.................... 23 0 3 0.67 2 2 0 0 0 0
.........................................................................................................................GACATTCGAACGTCATCCAGCGGAT................. 25 0 3 0.67 2 2 0 0 0 0
................TGGGGTCTGGTAGTGAGGGGCT............................................................................................................................. 22 3 2 0.50 1 0 1 0 0 0
........................................................................................................................TGACATTCTAACGTCATCCAGCGGA.................. 25 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................CATTCGAACGTCATCCAGCGGATCCG.............. 26 0 3 0.33 1 1 0 0 0 0
..........................................................................................................................ACATTCGAACGTCATCCAGCGGATCC............... 26 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................GACATTCGAACGTCATCCAGCGGA.................. 24 0 3 0.33 1 1 0 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAG...................... 21 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................CATTCGAACGTCATCCAGCGGATC................ 24 0 3 0.33 1 1 0 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCGGATA................ 27 1 3 0.33 1 0 0 0 0 1
............................................................................................................................ATTCGAACGTCATCCAGCGGATC................ 23 0 3 0.33 1 1 0 0 0 0
........................................................................................................................TGACATTCGAACGTCATCCAGCGA................... 24 1 3 0.33 1 1 0 0 0 0
........................................................................................................................TGACATTCAAACGTCATCCAGCGGATC................ 27 1 3 0.33 1 1 0 0 0 0
....................................................................................................................GCGATGACATTCGAACGTCATCCA....................... 24 0 3 0.33 1 1 0 0 0 0
.............................................................................................................................TTCGAACGTCATCCAGCGGATCCGACC........... 27 0 4 0.25 1 1 0 0 0 0
....................................................................TCTGGGGGTGAGTTAGCGCTG.......................................................................... 21 0 4 0.25 1 1 0 0 0 0
.......................................................................GGGGGTGAGTTAGCGCTG.......................................................................... 18 0 4 0.25 1 1 0 0 0 0
..............................................................................................................................TCGAACGTCATCCAGCGGA.................. 19 0 4 0.25 1 1 0 0 0 0
...................................................................................................................................CGTCATCCAGCGGATCCGACCGGT........ 24 0 4 0.25 1 0 0 0 1 0
..............................................................................................................................TCGAACGTCATCCAGCGGATCCG.............. 23 0 4 0.25 1 1 0 0 0 0
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAA.................................................. 24 1 5 0.20 1 1 0 0 0 0
..........................................................................................TGGCAGTTGAAGAGAAAGAGGA................................................... 22 0 5 0.20 1 1 0 0 0 0
..........................................................................................TGGCAGTTGAAGAGAAAGAGGAG.................................................. 23 0 5 0.20 1 1 0 0 0 0
........................................................................................................AAAGAGGAGAAAGCGATGACAT..................................... 22 0 5 0.20 1 0 0 0 0 1
.........................................................................................ATGGCAGTGGAAGAGAAAGAGGA................................................... 23 1 5 0.20 1 1 0 0 0 0
.........................................................................................ATGGCAGTTGGAGAGAAAGAGGG................................................... 23 2 5 0.20 1 0 0 0 0 1
........................................................................................CATGGCAGTTGAAGAGAAAGAGGA................................................... 24 1 5 0.20 1 1 0 0 0 0
.........................................................................................ATGGCAGTGGAAGAGAAAGAGG.................................................... 22 1 5 0.20 1 1 0 0 0 0
.........................................................................................ATGGCAGTTGAAGAGAAAGAG..................................................... 21 0 5 0.20 1 1 0 0 0 0
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAGAA................................................ 26 0 5 0.20 1 1 0 0 0 0
..........................................................................................TGGCAGTTGAAGAGAAAGAGG.................................................... 21 0 5 0.20 1 1 0 0 0 0
.........................................................................................ATGGCAGTGGAAGAGAAAGAGGAG.................................................. 24 1 5 0.20 1 1 0 0 0 0
.........................................................................................ATGGCAGTTGAAGAGAAAGA...................................................... 20 0 5 0.20 1 0 0 1 0 0
.................AGGGTGGTGGAGTGAGGGGC.............................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATCAGAGCGGCGATGTACCCCAAAACCTCACTCCCCGAGATTTTGCCACGAGACTTTCCAACCGAAGGAGACCCCCACTCAATCGCGACTACCGTCAACTTCTCTTTCTCCTCTTTCGCTACTGTAAGCTTGCAGTAGGTCGCCTAGGCTGGCCAGAGTATCA
************************************.((((..(((..((((.....(((((((((((((....))).)))))))).))...)))))))..)))).......................*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V057
head
.........................................................................CCCACTCAATCGCGACTACCGTCAAC................................................................ 26 0 4 75.00 300 298 2 0 0
..........................................................................CCACTCAATCGCGACTACCGTCAAC................................................................ 25 0 4 26.50 106 106 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCAGAGTAT.. 24 0 5 22.20 111 108 0 3 0
........................................................................................................................................AGGTCGCCTAGGCTGGCCAGAGTAT.. 25 0 5 17.60 88 86 0 2 0
..........................................................................................................................................GTCGCCTAGGCTGGCCAGAGTAT.. 23 0 5 16.80 84 81 2 1 0
.......................................................................CCCCCACTCAATCGCGACTACCGTCAAC................................................................ 28 0 4 11.00 44 44 0 0 0
........................................................................CCCCACTCAATCGCGACTACCGTCAAC................................................................ 27 0 4 9.25 37 37 0 0 0
...........................................................................CACTCAATCGCGACTACCGTCAAC................................................................ 24 0 4 8.25 33 33 0 0 0
...........................................................................................................................................TCGCCTAGGCTGGCCAGAGTAT.. 22 0 5 5.80 29 11 16 1 1
.........................................................................CCCACTCAATCGCGACTACCGTCAA................................................................. 25 0 4 3.25 13 13 0 0 0
................................CCCCGAGATTTTGCCACGAGACTTTCCA....................................................................................................... 28 0 1 3.00 3 3 0 0 0
..........................................................................CCACTCAATCGCGACTACCGTCAA................................................................. 24 0 4 2.75 11 11 0 0 0
......................................................................ACCCCCACTCAATCGCGACTACCGTCAAC................................................................ 29 0 4 2.50 10 10 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCAGAGTA... 23 0 5 2.40 12 12 0 0 0
............................................................................................................................................CGCCTAGGCTGGCCAGAGTAT.. 21 0 6 2.33 14 6 8 0 0
............................................................................ACTCAATCGCGACTACCGTCAAC................................................................ 23 0 4 2.25 9 9 0 0 0
.........................................................................CCCACTCAATCGCGACTGCCGTCAAC................................................................ 26 1 4 1.75 7 7 0 0 0
.............................................................................................................................................GCCTAGGCTGGCCAGAGTAT.. 20 0 6 1.67 10 3 7 0 0
........................................................................................................................................AGGTCGCCTAGGCTGGCCAGAGTA... 24 0 5 1.60 8 8 0 0 0
..........................................................................CCACTCAATCGCGACTGCCGTCAAC................................................................ 25 1 4 1.50 6 6 0 0 0
..........................................................................................................................................GTCGCCTAGGCTGGCCAGAGTA... 22 0 5 1.20 6 6 0 0 0
...................................CGAGATTTTGCCACGAGACTTTCCA....................................................................................................... 25 0 1 1.00 1 1 0 0 0
ATCAGAGCGGCGATGTACCCCAAAAC......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
..................................CCGATATTTAGCCACGAGACTTTCCA....................................................................................................... 26 2 1 1.00 1 0 0 1 0
..CAGAGCGGCGATGTACCCCAAAACCT....................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.........................................TTTGCCACGAGACTTTCCAACCGA.................................................................................................. 24 0 1 1.00 1 1 0 0 0
.......................................................................CCCCCACTCAATCGCGACTACCGTCAA................................................................. 27 0 4 1.00 4 4 0 0 0
........................................................................................................................................AGGTCGCCTAGGCTGGGCAGAGTAT.. 25 1 5 1.00 5 5 0 0 0
..........................................TTGCCACGAGACTTTCCAACCGA.................................................................................................. 23 0 1 1.00 1 1 0 0 0
.........ACGATGTACCCCAAAACCTCACT................................................................................................................................... 23 1 1 1.00 1 1 0 0 0
.............................................................................CTCAATCGCGACTACCGTCAAC................................................................ 22 0 4 1.00 4 4 0 0 0
................................CCCAGAGATTTTGCCACGAGACTTTCCA....................................................................................................... 28 1 1 1.00 1 1 0 0 0
....................CAAAACCTCACTCCCCGAGAT.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGGCAGAGTAT.. 24 1 5 0.80 4 4 0 0 0
.......................................................................................................................................TAGGTCGCCTAGGCTGGCCAGAGTAT.. 26 0 5 0.80 4 4 0 0 0
.........................................................................ACCACTCAATCGCGACTACCGTCAAC................................................................ 26 1 4 0.75 3 3 0 0 0
........................................................................CCCCACTCAATCGCGACTGCCGTCAAC................................................................ 27 1 4 0.75 3 3 0 0 0
.........................................................................CCCACTCAATCGCGACTTCCGTCAAC................................................................ 26 1 4 0.75 3 3 0 0 0
...........................................................................CACTCAATCGCGACTGCCGTCAAC................................................................ 24 1 4 0.75 3 3 0 0 0
................................................................................................................CTTTCGCTACTGTAAGCTTGCAGT........................... 24 0 4 0.75 3 3 0 0 0
..............................................................................................................................................CCTAGGCTGGCCAGAGTAT.. 19 0 6 0.67 4 1 3 0 0
......................................................................................................................................ATAGGTCGCCTAGGCTGGCCAGAGTAT.. 27 1 5 0.60 3 0 3 0 0
..........................................................................................................................................ATCGCCTAGGCTGGCCAGAGTAT.. 23 1 5 0.60 3 3 0 0 0
.........................................................................................................................................TGTCGCCTAGGCTGGCCAGAGTAT.. 24 1 5 0.60 3 3 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCAGAGT.... 22 0 5 0.60 3 3 0 0 0
..........................................................................................................................................GTCGCCTAGGCTGGACAGAGTAT.. 23 1 5 0.60 3 3 0 0 0
.........................................................................CCCACTCAATCGCGACTACCGTCAACT............................................................... 27 0 4 0.50 2 2 0 0 0
...............................................................................................................................................CTAGGCTGGCCAGAGTAT.. 18 0 6 0.50 3 0 3 0 0
...................................................................................CGCGACTACCGTCAACTTCTCTTTCTCCT................................................... 29 0 4 0.50 2 2 0 0 0
...........................................................................CACTCAATCGCGACTACCGTCAA................................................................. 23 0 4 0.50 2 2 0 0 0
..............................................................................TCAATCGCGACTACCGTCAACTTCTCT.......................................................... 27 0 4 0.50 2 2 0 0 0
.........................................................................CCCACTCAATCGCGACTACCGTCAAG................................................................ 26 1 4 0.50 2 2 0 0 0
..........................................................................CCACTCAATCGCGACTTCCGTCAAC................................................................ 25 1 4 0.50 2 2 0 0 0
.............................................................................................................CCTCTTTCGCTACTGTAAGCTTGCAGT........................... 27 0 4 0.50 2 2 0 0 0
...........................................................................................................................................GCGCCTAGGCTGGCCAGAGTAT.. 22 1 5 0.40 2 0 2 0 0
..........................................................................................................TCTCCTCTTTCGCTACTGTAAGCTT................................ 25 0 5 0.40 2 2 0 0 0
......................................................................................................................................GTAGGTCGCCTAGGCTGGCCAGAGTAT.. 27 0 5 0.40 2 2 0 0 0
...........................................................................................................................GTAAGCTTGCAGTAGGTCGCC................... 21 0 3 0.33 1 1 0 0 0
.....................................................................................................................GCTACTGTAAGCTTGCAGTAGGTCGCCT.................. 28 0 3 0.33 1 1 0 0 0
..........................................................................................................................TGTAAGCTTGCAGTAGGTCGCCT.................. 23 0 3 0.33 1 1 0 0 0
........................................................................CCCCACTCAATCGCGACTTCCGTCAAC................................................................ 27 1 4 0.25 1 1 0 0 0
...........................................................................CATTCAATCGCGACTGCCGTCAAC................................................................ 24 2 4 0.25 1 1 0 0 0
..........................................................................ACACTCAATCGCGACTACCGTCAAC................................................................ 25 1 4 0.25 1 1 0 0 0
..........................................................................CCACTCAATCGCGACTCCCGTCAAC................................................................ 25 1 4 0.25 1 1 0 0 0
...................................................................GAGACCCCCACTCAATCGCGACT......................................................................... 23 0 4 0.25 1 1 0 0 0
...............................................................................CAATCGCGACTACCGTCAACTTCTCT.......................................................... 26 0 4 0.25 1 1 0 0 0
...................................................................................................................TCGCTACTGTAAGCTTGCAGT........................... 21 0 4 0.25 1 1 0 0 0
.........................................................................CCCACTCAATCGCGACTACCGTCAACCGC............................................................. 29 2 4 0.25 1 1 0 0 0
.........................................................................ACCACTGAATCGCGACTACCGTCAAC................................................................ 26 2 4 0.25 1 1 0 0 0
.........................................................................ACCACTCAATCGCGACTACCGTCA.................................................................. 24 1 4 0.25 1 1 0 0 0
..............................................CACAAGACTTTCCAACCGAAGGAGACC.......................................................................................... 27 1 4 0.25 1 1 0 0 0
...............................................................................................................TCTTTCGCTACTGTAAGCTTGCAGT........................... 25 0 4 0.25 1 1 0 0 0
...........................................................................CACTCAATCGCGACTACCGTC................................................................... 21 0 4 0.25 1 1 0 0 0
........................................................................CCCCACTCAATCGCGACTACCGTCAA................................................................. 26 0 4 0.25 1 1 0 0 0
........................................................................TCCCACTCAATCGCGACTACCGTCAA................................................................. 26 1 4 0.25 1 1 0 0 0
.........................................................................CCCACCCAATCGCGACTACCGTCAAC................................................................ 26 1 4 0.25 1 1 0 0 0
..........................................................................CCACTCAATCGCGACTACCGTC................................................................... 22 0 4 0.25 1 1 0 0 0
.......................................................................CCCCCACTCAATCGCGACTGCCGTCAAC................................................................ 28 1 4 0.25 1 1 0 0 0
.........................................................................CCCAGTCAATCGCGACTACCGTCAACTT.............................................................. 28 1 4 0.25 1 1 0 0 0
..........................................................................AAACTCAATCGCGACTACCGTCAAC................................................................ 25 2 4 0.25 1 1 0 0 0
...........................................................................AACTCAATCGCGACTACCGTCAAC................................................................ 24 1 4 0.25 1 1 0 0 0
..........................................................................CCACTCAATCGCGACGACCGTCAA................................................................. 24 1 4 0.25 1 1 0 0 0
......................................................................ACCCCCACTCAATCGCGACTCCCGTCAAC................................................................ 29 1 4 0.25 1 1 0 0 0
...........................................................................CACTCAATCGCGACAACCGTCAA................................................................. 23 1 4 0.25 1 1 0 0 0
.......................................................................CCCCCACTCAATCGCGACTCCCGTCAAC................................................................ 28 1 4 0.25 1 1 0 0 0
.........................................................................CCCACTCAATCGCGACTACCTTCAAC................................................................ 26 1 4 0.25 1 1 0 0 0
.............................................................................................................CCTCTTTCGCTACTGTAAGCTTGCAG............................ 26 0 4 0.25 1 1 0 0 0
.........................................................................CCCACTCAATCGCGACTACCGTCAAA................................................................ 26 1 4 0.25 1 1 0 0 0
...........................................................................CAGTCAATCGCGACTACCGTCAAC................................................................ 24 1 4 0.25 1 1 0 0 0
..............................................................................................................ATCTTTCGCTACTGTAAGCTTGCAGT........................... 26 1 4 0.25 1 1 0 0 0
.....................................................................GACCCCCACTCAATCGCGACTACCG..................................................................... 25 0 4 0.25 1 1 0 0 0
..............................................................................TCAATCGCGACTACCGTCAACTTCT............................................................ 25 0 4 0.25 1 1 0 0 0
.........................................................................TCCACTCAATCGCGACTACCGTCAA................................................................. 25 1 4 0.25 1 1 0 0 0
..........................................................................CCACTCAATCGCGACTACCGTCAAA................................................................ 25 1 4 0.25 1 1 0 0 0
........................................................................CCCCACTCAATCGCGACTACCGTCAACG............................................................... 28 1 4 0.25 1 1 0 0 0
...................................................................................CGCGACTACCGTCAACTTCTCTTTC....................................................... 25 0 4 0.25 1 1 0 0 0
...........................................................................................................CTCCTCTTTCGCTACTGTAAGCTTGCAG............................ 28 0 4 0.25 1 1 0 0 0
............................................................................ACTCATTCGCGACTACCGTCAAC................................................................ 23 1 4 0.25 1 1 0 0 0
...........................................................................................................................................TCGCCTAGGCTGGGCAGAGTAT.. 22 1 5 0.20 1 1 0 0 0
...........................................................................................................................................TCGCCTAGGCTGGCCAGAGTTT.. 22 1 5 0.20 1 0 1 0 0
.........................................................................................................................................GGTCGCCTAGGCTTGGCAGAGTAT.. 24 2 5 0.20 1 1 0 0 0
............................................................................................................TCCTCTTTCGCTACTGTAAGCTT................................ 23 0 5 0.20 1 1 0 0 0
.........................................................................................................TTCTCCTCTTTCGCTACTGT...................................... 20 0 5 0.20 1 1 0 0 0
........................................................................................................................................ACGTCGCCTAGGCTGGCCAGAGTAT.. 25 1 5 0.20 1 1 0 0 0
........................................................................................CTACCGTCAACTTCTCTTTCTCCTCT................................................. 26 0 5 0.20 1 1 0 0 0
........................................................................................................TTTCTCCTCTTTCGCTACTGTAAGCT................................. 26 0 5 0.20 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGTCAGAGTAT.. 24 1 5 0.20 1 1 0 0 0
.......................................................................................................................................AAGGTCGCCTAGGCTGGCCAGAGTAT.. 26 1 5 0.20 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCAGAGTAA.. 24 1 5 0.20 1 1 0 0 0
.........................................................................................................TTCTCCTCTTTCGCTACTGTAAGCTT................................ 26 0 5 0.20 1 1 0 0 0
........................................................................................................................................TGGTCGCCTAGGGTGGGCAGAGTAT.. 25 3 5 0.20 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCAGAGTAG.. 24 1 5 0.20 1 1 0 0 0
.....................................................................................................................................AGCAGGTCGCCTAGGCTGGCCAGAGTAT.. 28 1 5 0.20 1 1 0 0 0
................................................................................................AACTTCTCTTTCTCCTCTTTCGCTACT........................................ 27 0 5 0.20 1 1 0 0 0
...........................................................................................................................................TCGCCTAGGCTGGCCAGAGTA... 21 0 5 0.20 1 1 0 0 0
......................................................................................................................................GTAGGTCGCCTAGGCTGGGCAGAGTAT.. 27 1 5 0.20 1 1 0 0 0
........................................................................................................................................AGGTCGCCTAGGCTGGCCAGAGTATA. 26 1 5 0.20 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCAGA...... 20 0 5 0.20 1 1 0 0 0
....................................................................................GCGACTACCGTCAACTTCTCTTT........................................................ 23 0 5 0.20 1 1 0 0 0
........................................................................................................................................AGGTCGCCTAGGCTGGTCAGAGTAT.. 25 1 5 0.20 1 1 0 0 0
......................................................................................................TCTTTCTCCTCTTTCGCTACTGTAAGCT................................. 28 0 5 0.20 1 1 0 0 0
..........................................................................................................................................TTCGCCTAGGCTGGCCAGAGTAT.. 23 1 5 0.20 1 1 0 0 0
........................................................................................................................................AGGTCGCCTAGGCTGGCCAGAGT.... 23 0 5 0.20 1 1 0 0 0
.........................................................................................................................................AGTCGCCTAGGCTGGCCAGAGTAT.. 24 1 5 0.20 1 0 0 1 0
........................................................................................................................................AGGTCGCCTAGGCTGGCGAGAGTAT.. 25 1 5 0.20 1 0 0 1 0
.........................................................................................................................................GGGCGCCTAGGCTGGGCAGAGTAT.. 24 2 5 0.20 1 1 0 0 0
...........................................................................................................................................CCGCCTAGGCTGGCCAGAGTAT.. 22 1 5 0.20 1 0 1 0 0
........................................................................................................................................GGGTCGCCTAGGCTGGCCGGAGTAT.. 25 2 5 0.20 1 0 0 1 0
...........................................................................................................CTCCTCTTTCGCTACTGTAAGCTT................................ 24 0 5 0.20 1 1 0 0 0
........................................................................................................................................AGGTCGCCTAGGCTGGACAGAGTAT.. 25 1 5 0.20 1 1 0 0 0
..........................................................................................................................................AGCGCCTAGGCTGGCCAGAGTAT.. 23 2 5 0.20 1 1 0 0 0
..........................................................................................................................................GTCGCCTAGGGTGGCCAGGGTAT.. 23 2 5 0.20 1 1 0 0 0
.........................................................................................................................................GCTCGCCTAGGCTGGCCAGAGTA... 23 1 5 0.20 1 1 0 0 0
.......................................................................................................TTTTCTCCTCTTTCGCTACTGTAA.................................... 24 1 5 0.20 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGGCCA........ 18 0 5 0.20 1 1 0 0 0
..........................................................................................................................................GTCGCCTAGGCTGGTCAGAGTAT.. 23 1 5 0.20 1 1 0 0 0
.........................................................................................................................................GGTCGCCTAGGCTGACCAGAGTA... 23 1 5 0.20 1 1 0 0 0
........................................................................................................................................AGGTCGCCTATGCTGGCCAGAGTAT.. 25 1 5 0.20 1 1 0 0 0
........................................................................................................TTTCTCCTCTTTCGCTACTGTAAGCTT................................ 27 0 5 0.20 1 1 0 0 0
........................................................................................................................................AGGTCTTCTAGGCTGGCCAGAGTAT.. 25 2 5 0.20 1 1 0 0 0
.......................................................................................................................................TAGGTCGCCTAGGCTGGCCAGAGT.... 24 0 5 0.20 1 1 0 0 0
.............................................................................................................................................GCCTAGGCTCGCCAGAGTAT.. 20 1 6 0.17 1 1 0 0 0
............................................................................................................................................CGCCTAGGCTGGACAGAGTAT.. 21 1 6 0.17 1 1 0 0 0
.............................................................................................................................................GCCTAGGCGGGCCAGAGTAT.. 20 1 6 0.17 1 0 1 0 0
............................................................................................................................................CGCCTAGGCTGGCCAGAGTA... 20 0 6 0.17 1 1 0 0 0
.......................................................................................................CTTTCTCCTCTTTCGCTACTG....................................... 21 0 6 0.17 1 1 0 0 0
............................................................................................................................................CGCCTAGGCTGGTCAGAGTAT.. 21 1 6 0.17 1 1 0 0 0
............................................................................................................................................AGCCTAGGCTGGCCAGAGTAT.. 21 1 6 0.17 1 0 1 0 0
............................................................................................................................................TCCCTAGGCTGGCCAGAGTAT.. 21 2 6 0.17 1 1 0 0 0
.......................................................................................................CTTTCTCCTCTTTCGCTACT........................................ 20 0 7 0.14 1 1 0 0 0
..CCGAGCGGCGATGAATCCC.............................................................................................................................................. 19 3 7 0.14 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_26:695894-696056 - dpe_270 TAGTCTCGCCGCTACATGGGGTTTTGGAGTGAGGGGCTCTAAAACGGTGCTCTGAAAGGTTGGCTTCCTCTGGGGGTGAGTTAGCGCTGATGGCAGTTGAAGAGAAAGAGGAGAAAGCGATGACATTCGAACGTCATCCAGCGGATCCGACCGGTCTCATAGT
dp5 Unknown_singleton_2954:1624-1785 - TAGTCTCGCTGCTACA-GGGGTTTTTGAGTCAGGGGCTCTAAAACGGTGCTCTGAAAGGTTGGCTCCCTCTGGGGGTGAGTTTGCGCTGATGGCAGTTGAAGAGAAAGAGGAGAAAGCGATGACATTCGAACGTCATCCAGCGGATCCGACCGGTCTCATAGT
droWil2 scf2_1100000004822:709014-709016 + TGG----------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TAGTCTCGCCGCTACATGGGGTTTTGGAGTGAGGGGCTCTAAAACGGTGCTCTGAAAGGTTGGCTTCCTCTGGGGGTGAGTTAGCGCTGATGGCAGTTGAAGAGAAAGAGGAGAAAGCGATGACATTCGAACGTCATCCAGCGGATCCGACCGGTCTCATAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGA...................................................2354.40220170005
........................................................................................................................TGACATTCGAACGTCATCCAGCGGATC................2732.678071000
........................................................................................................................TGACATTCGAACGTCATCCAGCGGATCC...............2832.337340000
.........................................................................................ATGGCAGTTGAAGAGAAAGAGG....................................................2252.0010160003
..................................................TCTGAAAGGTTGGCTTCCTCTGGG.........................................................................................2412.002020000
..................................................TCTGAAAGGTTGGCTTCCTCTGGGG........................................................................................2512.002020000
........................................................................................................................TGACATTCGAACGTCATCCAGCGG...................2431.675050000
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAGA.................................................2551.206060000
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAG..................................................2451.206060000
............TACATGGGGTTTTGGAGTGAGG.................................................................................................................................2211.001010000
...............................................TGCTCTGAAAGGTTGGCTTCCTCTG...........................................................................................2511.001010000
........................................................................................................................TGACATTCGAACGTCATCCAGCGGAT.................2631.003030000
..................................................TCTGAAAGGTTGGCTTCCTCTGG..........................................................................................2311.001010000
TAGTCTCGCCGCTACATGGGGTTTT..........................................................................................................................................2511.001010000
........................................................................................................................TGACATTCGAACGTCATCCAGCGGA..................2531.003030000
........................................................................................................................TGACATTCGAACGTCATCCAGCG....................2330.672020000
.........................................................................................................................GACATTCGAACGTCATCCAGCGGAT.................2530.672020000
...........................................................................................................................CATTCGAACGTCATCCAGCGGATCCG..............2630.331010000
..........................................................................................................................ACATTCGAACGTCATCCAGCGGATCC...............2630.331010000
.........................................................................................................................GACATTCGAACGTCATCCAGCGGA..................2430.331010000
........................................................................................................................TGACATTCGAACGTCATCCAG......................2130.331010000
...........................................................................................................................CATTCGAACGTCATCCAGCGGATC................2430.331010000
........................................................................................................................TGACATTCGAACGTCATCCAGCGGATA................2730.331001000
............................................................................................................................ATTCGAACGTCATCCAGCGGATC................2330.331010000
........................................................................................................................TGACATTCGAACGTCATCCAGCGA...................2430.331010000
....................................................................................................................GCGATGACATTCGAACGTCATCCA.......................2430.331010000
.............................................................................................................................TTCGAACGTCATCCAGCGGATCCGACC...........2740.251010000
....................................................................TCTGGGGGTGAGTTAGCGCTG..........................................................................2140.251010000
.......................................................................GGGGGTGAGTTAGCGCTG..........................................................................1840.251010000
..............................................................................................................................TCGAACGTCATCCAGCGGA..................1940.251010000
...................................................................................................................................CGTCATCCAGCGGATCCGACCGGT........2440.251100000
..............................................................................................................................TCGAACGTCATCCAGCGGATCCG..............2340.251010000
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAA..................................................2450.201010000
..........................................................................................TGGCAGTTGAAGAGAAAGAGGA...................................................2250.201010000
..........................................................................................TGGCAGTTGAAGAGAAAGAGGAG..................................................2350.201010000
........................................................................................................AAAGAGGAGAAAGCGATGACAT.....................................2250.201001000
.........................................................................................ATGGCAGTTGAAGAGAAAGAG.....................................................2150.201010000
.........................................................................................ATGGCAGTTGAAGAGAAAGAGGAGAA................................................2650.201010000
..........................................................................................TGGCAGTTGAAGAGAAAGAGG....................................................2150.201010000
.........................................................................................ATGGCAGTTGAAGAGAAAGA......................................................2050.201000001
dp5
TAGTCTCGCTGCTACA-GGGGTTTTTGAGTCAGGGGCTCTAAAACGGTGCTCTGAAAGGTTGGCTCCCTCTGGGGGTGAGTTTGCGCTGATGGCAGTTGAAGAGAAAGAGGAGAAAGCGATGACATTCGAACGTCATCCAGCGGATCCGACCGGTCTCATAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................TAAAACGGTGCTCTGAAAGGTTGGC...................................................................................................2528.501704100001200
........................................................................................................AAAGAGGAGAAAGCGATGACATT....................................2356.403203100000100
........................................................................................................AAAGAGGAGAAAGCGATGACAT.....................................2254.602301810000400
........................................................................................................AAAGAGGAGAAAGCGATGACA......................................2152.401201100100000
........................................................................................................AAAGAGGAGAAAGCGATGAC.......................................2052.00100900000100
........................................................................................................AAAGAGGAGAAAGCGATGACATTC...................................2452.001001000000000
..................................................TCTGAAAGGTTGGCTCCCTCTGG..........................................................................................2321.5030200000100
.........................TGAGTCAGGGGCTCTAAAACGGTG..................................................................................................................2421.5030000000300
.....................................TCTAAAACGGTGCTCTGAAAGGT.......................................................................................................2331.3340100000300
.....................................TCTAAAACGGTGCTCTGAAAA.........................................................................................................2131.3340000000400
...........................................................TTGGCTCCCTCTGGGGGTGAGTTT................................................................................2421.0020200000000
......................................................................TGGGGGTGAGTTTGCGCTGATG.......................................................................2221.0020100000100
.....................................................................................................................................TCATCCAGCGGATCCGACCGGTCT......2431.0030300000000
.........TGCTACA-GGGGTTTTTGAGTCAGGG................................................................................................................................2511.0010000100000
...............................................TGCTCTGAAAGGTTGGCTCCCTC.............................................................................................2321.0020200000000
...................................................CTGAAAGGTTGGCTCCCTCTGG..........................................................................................2221.0020200000000
............................................................................TGAGTTTGCGCTGATGGCAG...................................................................2021.0020200000000
.......................................TAAAACGGTGCTCTGAAAGGTTGGCT..................................................................................................2621.0020100000100
....................................................TGAAAGGTTGGCTCCCTCTGGGGGTG.....................................................................................2621.0020000000200
........................................................................................................AAAGAGGAGAAAGCGATGACATTCG..................................2550.8040300001000
.........................................................................................................AAGAGGAGAAAGCGATGACATT....................................2250.8040400000000
........................................................................................................AAAGAGGAGAAAGCGATGA........................................1960.6740300100000
.....................................................................................................................................TCATCCAGCGGATCCGACCGGTC.......2330.6720200000000
.....................................................................................................................................TCATCCAGCGGATCCGACCGGTCTCA....2630.6720200000000
.....................................................................................................................................TCATCCAGCGGATCCGACCGGT........2230.6720200000000
..................................................TCTGAAAGGTTGGCTCCCTCTG...........................................................................................2220.5010100000000
..................................................TCTGAAAGGTTGGCTCCCTA.............................................................................................2020.5010100000000
.................GGGGTTTTTGAGTCAGGGGT..............................................................................................................................2020.5010010000000
.................................................................CCCTCTGGGGGTGAGTTTGCGCTGATG.......................................................................2720.5010100000000
....................................................TGAAAGGTTGGCTCCCTCTGG..........................................................................................2120.5010100000000
....................................................................TCTGGGGGTGAGTTTGCGCTGATG.......................................................................2420.5010100000000
................................................GCTCTGAAAGGTTGGCTCCC...............................................................................................2020.5010100000000
................................................................................TTTGCGCTGATGGCAGTTGAAGAGA..........................................................2520.5010100000000
........................................................................................................AAAGAGGAGAAAGCGATGACATTCGAA................................2740.5020200000000
....................................................TGAAAGGTTGGCTCCCTCTGGGG........................................................................................2320.5010100000000
..................................................TCTGAAAGGTTGGCTCCCT..............................................................................................1920.5010100000000
...............................................TGCTCTGAAAGGTTGGCTCCCTCT............................................................................................2420.5010100000000
...............................................TGCTCTGAAAGGTTGGCTCCCTCTGG..........................................................................................2620.5010100000000
................................................................TCCCTCTGGGGGTGAGTTTGCGC............................................................................2320.5010100000000
..................................................TCTGAAAGGTTGGCTCCCTCT............................................................................................2120.5010100000000
...............................................TGCTCTGAAAGGTTGGCTC.................................................................................................1920.5010100000000
....................................................................TCTGGGGGTGAGTTTGCGCTGAT........................................................................2320.5010100000000
...........................................................................GTGAGTTTGCGCTGATGG......................................................................1820.5010100000000
.........................................AAACGGTGCTCTGAAAGGTTGG....................................................................................................2220.5010100000000
.................................................................................TTGCGCTGATGGCAGTTGAA..............................................................2020.5010100000000
.............................................GGTGCTCTGAAAGGTTGGCTCCC...............................................................................................2320.5010100000000
................................................................................TTTGCGCTGATGGCAGTTGAAGAG...........................................................2420.5010100000000
........................................................................................................AAAGAGGAGAAAGCGATGACATTCGA.................................2650.4020200000000
.........................................................................................................AAGAGGAGAAAGCGATGACAT.....................................2150.4020200000000
........................................................................................................AAAGAGGAGAAAGCGATGACATTCGAAC...............................2830.3310100000000
.......................................TAAAACGGTGCTCTGAAAGGTTG.....................................................................................................2330.3310100000000
.....................................................................................................................................TCATCCAGCGGATCCGACCGGTCTCAT...2730.3310100000000
.................................................................................................TGAAGAGAAAGAGGAGAAAGCGA...........................................2330.3310100000000
.....................................................................................................................................TCATCCAGCGGATCCGACCGGTCTC.....2530.3310100000000
.......................................................................................................................................ATCCAGCGGATCCGACCGGTC.......2130.3310100000000
.....................................TCTAAAACGGTGCTCTGAAAG.........................................................................................................2130.3310000000010
.....................................................................................................................................TCATCCAGCGGATCCGACCG..........2030.3310100000000
.............................TCAGGGGCTCTAAAACGGT...................................................................................................................1930.3310100000000
.....................................................................................................................................TCATCCAGCGGATCCGACCGG.........2130.3310100000000
..............................CAGGGGCTCTAAAACGG....................................................................................................................1730.3310000000100
.................................................................................................TGAAGAGAAAGAGGAGAAAGCGATG.........................................2530.3310010000000
.......................................TAAAACGGTGCTCTGAAAGGTTAAT...................................................................................................2530.3310100000000
.................................................................................................TGAAGAGAAAGAGGAGAAAGCG............................................2230.3310100000000
........................................................................................................AAAGAGGAGAAAGCGATGACAGG....................................2350.2010100000000
........................................................................................................AAAGAGGAGAAAGCGATGACATTA...................................2450.2010100000000
droWil2
TGG----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/15/2015 at 03:05 PM