ID:

dpe_27

 Coordinate:

scaffold_5:3483623-3483687 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.9 -31.2

Flybase annnotation

intron [Dper\GL25684-in]; utr3 [utr3_minus_1364]

No Repeatable elements found

Sense Strand Reads

AGTGATCGAGTTTGAATAGTGATTTAGTTCCACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCTAAAATCGACCTTTTGATGTACTACTTTAAAAAGCACAGTCGAAGTCAACAGAACTGTGCGATTAGAGTTATCAATAGGCAG

***********************************..((((..((((....((((((((..(((((((((((((...............)))))))))))))))))))))....)))).))))......************************************ 		Read size # Mismatch Hit Count Total Norm Total V042

embryo

 M021

embryo

 V057

head

 V111

male body		 M042

female body

 V050

head
..................................................TAAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 0 1 4936.00 4936 4586 124 167 1 58 0
.................................................TTAAGTAGTATCCATTAAGAGGTC............................................................................................ 24 0 1 232.00 232 96 129 6 0 1 0
..................................................TAAGTAGTATCCATTAAAGGGTCG........................................................................................... 24 2 1 87.00 87 87 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTG........................................................................................... 24 3 1 80.00 80 3 0 0 76 1 0
..................................................TAAGTAGTATCCATTAAGCGGTCG........................................................................................... 24 1 1 78.00 78 77 0 1 0 0 0
..................................................TAAGTAGTATCCATTCAGAGGTCG........................................................................................... 24 1 1 55.00 55 55 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTC............................................................................................ 23 0 1 46.00 46 28 11 4 0 2 1
..................................................TAAGTAGTCTCCATTAAGAGGTCG........................................................................................... 24 1 1 25.00 25 25 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGAGGTCG........................................................................................... 24 1 1 23.00 23 22 0 1 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCG........................................................................................... 25 0 1 22.00 22 19 0 2 1 0 0
..................................................TAAGTAGTATCCATTAAGAGGGCG........................................................................................... 24 1 1 20.00 20 20 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCGC.......................................................................................... 25 1 1 18.00 18 4 12 1 0 1 0
...................................................AAGTAGTATCCATTAAGAGGTCG........................................................................................... 23 0 1 18.00 18 15 0 0 0 3 0
..................................................TAAGTAGTATCCATTAAGAGGTCGT.......................................................................................... 25 0 1 16.00 16 10 5 0 0 1 0
.................................................TTAAGTAGTATCCATTAAGAGGT............................................................................................. 23 0 1 16.00 16 8 6 2 0 0 0
..................................................TAAGTAGTATCCATTAAGAAGTCG........................................................................................... 24 1 1 13.00 13 13 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGCCG........................................................................................... 24 1 1 12.00 12 8 0 4 0 0 0
..................................................TAAGTAGTATCCATTGAGAGGTCG........................................................................................... 24 1 1 11.00 11 11 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGTTCG........................................................................................... 24 1 1 11.00 11 9 0 2 0 0 0
............................................................................................CCTTTTGATGTACTACTTTAAA................................................... 22 0 1 11.00 11 1 10 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTAG........................................................................................... 24 1 1 10.00 10 9 0 1 0 0 0
..................................................TAAGTAGTATCCATTTAGAGGTCG........................................................................................... 24 1 1 10.00 10 9 1 0 0 0 0
..................................................TAAGTAGCATCCATTAAGAGGTCG........................................................................................... 24 1 1 9.00 9 8 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCT........................................................................................... 24 1 1 8.00 8 6 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTTG........................................................................................... 24 1 1 8.00 8 7 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGTCG........................................................................................... 24 1 1 8.00 8 7 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGTGGTCG........................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACAGGTCG........................................................................................... 24 1 1 8.00 8 7 0 1 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGTCG........................................................................................... 24 1 1 7.00 7 5 1 1 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTT............................................................................................ 23 3 1 7.00 7 1 0 0 6 0 0
..................................................TAAGTAGTATCCATTAAGAGG.............................................................................................. 21 0 1 7.00 7 5 2 0 0 0 0
..................................................TAAGTAGTATCTATTAAGAGGTCG........................................................................................... 24 1 1 7.00 7 7 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 7.00 7 6 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCC........................................................................................... 24 1 1 7.00 7 6 0 1 0 0 0
..................................................TAAGCAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 6.00 6 5 0 1 0 0 0
...........................................................................................ACCTTTTGATGTACTACTTTAA.................................................... 22 0 1 6.00 6 5 1 0 0 0 0
..................................................TAAGTAGTGTCCATTAAGAGGTCG........................................................................................... 24 1 1 6.00 6 5 0 0 0 1 0
..................................................TAAGTAGTATCCATTAAGAGGTCA........................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTGGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0
..................................................TAAGTAGTATCCATCAAGAGGTCG........................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAGAGGTCG........................................................................................... 24 1 1 5.00 5 4 1 0 0 0 0
..................................................TAAGTAGTATCCATTAGGAGGTCG........................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGAGGGCG........................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................CAAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 5.00 5 4 0 1 0 0 0
..................................................TAAGTAGTATCCATTACGAGGTCG........................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAGAGGTCG........................................................................................... 24 1 1 5.00 5 4 1 0 0 0 0
............................................................................................CCTTTTGATGTACTACTTTAAAA.................................................. 23 0 1 5.00 5 1 4 0 0 0 0
......................................................TAGTATCCATTAAGAGGTCG........................................................................................... 20 0 1 5.00 5 3 0 1 0 1 0
..................................................TAAGGAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 5.00 5 3 1 1 0 0 0
..................................................TAAGTAGTATTCATTAAGAGGTCG........................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TAAGTAGTACCCATTAAGAGGTCG........................................................................................... 24 1 1 5.00 5 4 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGATGTCG........................................................................................... 24 1 1 5.00 5 4 0 1 0 0 0
..................................................TAAGTAGTATACATTAAGAGGACG........................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAATAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGACG........................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAGAGGTCG........................................................................................... 24 1 1 4.00 4 3 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGAG............................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGGCG........................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
.................................................CTAAGTAGTATCCATTAAGAGGTCG........................................................................................... 25 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAATATCCATTAAGAGGTCG........................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCAGTAAGAGGTCG........................................................................................... 24 1 1 4.00 4 3 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGAGCTCG........................................................................................... 24 1 1 4.00 4 2 0 2 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTGG........................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAGCGGTCG........................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGT............................................................................................. 22 0 1 4.00 4 2 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGGTCG........................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................ACCTTTTGATGTACTACT........................................................ 18 0 1 3.00 3 0 3 0 0 0 0
..................................................TAAGTAGTATCAATTAAGAGGTCG........................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................GAAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGCAG........................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.................................................TTAAGTAGTATCCATTCAGAGGTC............................................................................................ 24 1 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTC............................................................................................ 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGACGTCG........................................................................................... 24 1 1 3.00 3 2 0 1 0 0 0
..................................................TAAGTAGTCTCCATTTAGAGGTCG........................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTCTCCATTCAGAGGTCG........................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TAAGTAGTATCCACTAAGAGGTCG........................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGGC............................................................................................ 24 1 1 3.00 3 2 1 0 0 0 0
....................................................AGTAGTATCCATTAAGAGGTCG........................................................................................... 22 0 1 2.00 2 1 0 0 0 1 0
...........................................................................................ACCTTTTGATGTACTACTTTA..................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTCTCCATTTAGATGTCG........................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TGAGTAGTATACATTTAGAGGTCG........................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TACGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAAGGGTCG........................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
...................................................AAGTAGTATCCATTAAGAGGTCGT.......................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCGA.......................................................................................... 25 1 1 2.00 2 1 1 0 0 0 0
..............................................................................................TTTTGATGTACTACTTTA..................................................... 18 0 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTCTCCATTAAAGGGTCG........................................................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTACTATCCATTAAGAGGTCG........................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTCTCCATTAAGCGGTCG........................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGATCG........................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATAGGTCG........................................................................................... 24 1 1 2.00 2 1 0 1 0 0 0
..................................................TAAGTAGTATCCATTTAGAGGCCG........................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0
.................................................TTAAGTCGTATCCATTAAGAGGTC............................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGGATCCATTACGAGGTCG........................................................................................... 24 2 1 2.00 2 0 0 2 0 0 0
..................................................TAAGTAGTTTCCATTAAGAGGGCG........................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGACGTC............................................................................................ 24 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTTTCCATTAAGACGTCG........................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
..................................................TAATTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTAACCATTAAGAGGTTG........................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCTTTTGATGTACTACTTTAAA................................................... 23 0 1 2.00 2 0 2 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCGC.......................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0
..................................................TAAGTAGTATACATTAAGAGGTGG........................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TAGGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACCTTTTGATGTACTACTTTGA.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGGCCG........................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCC........................................................................................... 25 1 1 2.00 2 1 0 1 0 0 0
..................................................TAAGTAGTATACATTAAGAGGTAG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGTTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAGAGGTAG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................CTTAAGTCGTATCCATTAAGAGGTC............................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCTATTAAAGGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGACG........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGCATCCATTGAGAGGTCG........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
...................................................AAGTAGTCTCCATTAATAGGTCG........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTATGAGTTCG........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
.................................................TTAAGTCGTATCCATTGAGAGGTC............................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGGTATCCATTAAGTGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATACATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTTTCCATTGAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTGTTCATTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGCCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGAGGTTG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCTATTGAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTCAGAGGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAAGGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTATCCATTACGAGGTCG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATGAAGTGGTCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TGAGTAGTATCCATTAAGACGTCG........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGCAGTATCCATTAAGAGGTAG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTATGCATGAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAACCGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATAAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGTCCC........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATGCATTAAGAGGTTG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTATTCCTTAAGATGTCG........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAGTATCAATTAAGGGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCCTTACGA................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATGAAGGGGGCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAACAGGTAG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTATCCGTTAAGAGTGCG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................TCAGTAGTATCCATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAAAGGTAG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGGAG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCGTTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGTATCCATTAAGAGATGG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGCCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGATTTCT........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTATCCATTAACAGGTTG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTAGCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTT............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................AAAGTAGTATCCATTCAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATGAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCA........................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0
..................................................TAAGTAGTATCCATTCAGAGTTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACAGTTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGTGGTC............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
.................................................CTAAGTAGCATCCATTAAGAGGTCT........................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGGAGTATCCATTAAGGGGT............................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..................................................GAAGTAGGATCCATTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTTCGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATAAATTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATTCATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTCAGAGGTCGT.......................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATGTAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTGAGAGGTCG........................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGGATCCATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TACTTAGTATCCATTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGA................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.................................................TTAGGTAGTATCCATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGTTCA........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTA............................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
...................................................AAGTAGTACCCATTAAGAGGTCG........................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0
..................................................TAAGTAGTATCCATTTAGAGGATG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCGTTAAGAGGAC............................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCACTAAGAG............................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TAGGTAGTCTCCATTAAGCGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GAAGTAGTATCCGTTACGAGGTCG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................CAAGTAGGATCCATTAAGAGGACG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTCTCCATTAAGAGGGCG........................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..................................................AAAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACATGTCC........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAACAGGGCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAGACGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGTGG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGCTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGATGTCG........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGAC............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTATCCCTTAAGAGGTCGT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAAAAATATCCATTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGACT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAACTAGTATCCATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGGAGTAGCCATGAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................GTAAGTCGTATCGATTAAGAGGTC............................................................................................ 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTCGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGTTCT........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGCAGTAG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCAGTAAGAGGTAG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAGAGGTGG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGG.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGGGTG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
....................................................AGTAGTATCCATTAAAGGGTCG........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................GTAAGTAGTATCCATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAGAGGGCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTACGAGGTC............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAGTCTTCATTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAGTTGTC............................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAGAGGAAG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTGAGTGGTCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGGCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCAATTTAGGGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGACGCCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATCCATTACGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................AAAGTCCTATCCATTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTACTATACATTAAGAGGCCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TATGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGGCA........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGCAGTATCCATTTAGAGGTCG........................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTGTCCGTTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..................................................TGAGTAGTATCCATTAAGAGGACG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATTCATTAAGAGGTCGT.......................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..................................................TAAGTAGCATCCATTAAGAGGTC............................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAAAGATCA........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TTAGTAGTGTCAATTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGT.............................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0
..................................................TAAGTAGTCTCCCTTAAGAAGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGAATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAACATGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCTTAAATAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAATATCCATTAAGAGGTCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGACGGCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTGGTATCCATTGAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCATTAAGAGTTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATATATTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATTGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATACATTAAGAGGTAG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTTGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTGTCCATTAAGAGGGCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCGATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTA............................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAAGACG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCAATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..................................................TACGTAGTATCCATTAAGAGTACG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAGATGACG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................AAAGTCGTATCCATTAAGAGGTCA........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCCATTAAGAGGTCA........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TACGTAGTATCCAGTACGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...................................................AAGTAGTATCCATTAAGAGG.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..................................................CAAGTAGTAGCCATTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGAGGGCC........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATGCATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAGAGGACG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCACAGGTCC........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
........................................................GTATCCATTAAGAGGTCG........................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................TCAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGATGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGCTC............................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAGATGTCGC.......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGCATCCATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTATTATCCCTTAAGAGGTCC........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TACGGAGTATCCAGTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTCAGAGGTCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTCT........................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTACGAGGTAG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGCTCC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAATAGGCAG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TTAGTAGTATCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TATGTAGGATCAATTAAGAGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTAA........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGGAGTATCCATTAAGAGGTC............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCAGTAAGAGGGCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTATGATGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................TTAAGTACTATCCATTAAGAGCTCC........................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTCAGAGGGCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTCAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGAGGTCC........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAGTGGGCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TTAGTAGTATGCATTAAGCGGTCG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................TAAGTAGTGTCCATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAGAGGTTG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTTAGAGGTTG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTATGAGGTAG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TTAGTGGTATCCATTAAAAGGTCG........................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..................................................TGAGTAGTCTCCATTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCATTTAGATGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTTTCCATTAAGAGGTCG........................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0
..................................................AAAGTAGTATCCATTTAGAAGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGGATCTATTAAGAGGTTG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCCTTAAGAGGCCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGAAGTATCCATTAAGATGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCCGTTAAGATGTA............................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATACATTAAGTGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTAGCCTTTAAGAGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................AAAGTAGTATCCATTCAGCGGTCG........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..................................................TAAGGAGTATCCATTAAGAGGGCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTATCGATTAAGCGGTCG........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..................................................TAAGTAGTCTCCATTGAGAGGTCT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

TCACTAGCTCAAACTTATCACTAAATCAAGGTGTTAACGACGTCGAAGGAATTCATCATAGGTAATTCTCCAGCAGTAGATCGATTTTAGCTGGAAAACTACATGATGAAATTTTTCGTGTCAGCTTCAGTTGTCTTGACACGCTAATCTCAATAGTTATCCGTC

************************************..((((..((((....((((((((..(((((((((((((...............)))))))))))))))))))))....)))).))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_5:3483573-3483737 - dpe_27 confident AGTGATCGAGTTTGAATAGTG-------ATTTAGTTC---------CACA------ATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCA-------ACAGA----------AC----------------------TGTGCGATTAGAGTTATC----------------------------------------------------AATA-GGCAG
dp5 4_group1:1722755-1722920 + dps-mir-968 Known_mirbase AGTGATCGAGTTTGAATAGTG-------ATTTAGTTC---------TACA------ATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCA-------ACAGA----------AC----------------------TGTGCGATTAGAGTTATC----------------------------------------------------AATA-GGCAG
droWil2 scf2_1100000004585:545307-545448 + dwi_11 confident TG----------------------------------------------------------ATGCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCA-------ACAAA----------TA----------------------TAGAAAG-----------------------------------TA-TTGAAAAAGTGTTC--A--------TTTG-ATCTG
droVir3 scaffold_12723:5043990-5044170 - dvi-mir-968 Known_mirbase ACAAGTA---TTAGAGT-------------GTGATTCTTTTTTTTTTTTTAATTTCAATTATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCA-------GCAAA----------TC----------------------GATAAGA-----------------------------------CAAACTAAAAAATTTAAATC--------ATTG-CTAAG
droAna3 scaffold_12943:1815505-1815666 - dan_28 confident GAAAA--GAGG-------------------TTGAATC---------CTAA------ATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCG-------GCTAA----------AATAAGTTTC--------------------------------------AAGCATTTCAAGCCAAAGTT------------TTC--------------A-TAAAT
droBip1 scf7180000396728:1424212-1424336 + --------------------------------------------------------------GCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCG-------TCCAAGTTGAAAATA----TCTTCC--------------------------------------------------------------AA--------------------ACAA-TATTA
droKik1 scf7180000302236:231975-232153 + CATAGTGAAGTCCAAGTGCTA-------ATCT----------------------TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCG-------GCTT----------TCA----------------------TATAGA---------ATCACTATCTTGAATTCC-----------------------TGACCTAAAATAAGGACA-TACAT
droFic1 scf7180000453925:244643-244808 + AGCAAACAAGTCAAATTAAGC-------ACTTTACTC---------AATA------AATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGCTTACTACTTTAAGAAACTCTAGTTATACAGA-------ACAC----------TAT----------------------TATACAAGAAAAGTGTTT----------------------------------------------------TATT-TTTAA
droEle1 scf7180000491338:1357109-1357263 - AGTGATTGAGTGCAAAGAATA-------GTTTA---C---------CATT------AGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGTTTA----------AAATAC----------------------------AAT--------------------------------------------------------------AAAAGATTAT
droRho1 scf7180000780107:332465-332621 + AGTGATCGAGTCCAAGGAATA-------GTTACAGTG---------AATA------AATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGTTTA----------AAGTAG--------------------------------------ATT----------------------------------------------------AATA-ACTAA
droBia1 scf7180000302408:2583404-2583562 + ATC----GTGTCC------CACATCCAAAATTAAGTG---------CAAA------TTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCT-------TCAT----------TTTAAAGTAATA----------------------------------------------------------------------GAACAAT--------TT-CAATA
droTak1 scf7180000414072:20168-20317 + AGTAATCCAGTTCGCATAATA-------GTTTGAGTC---------CAAA------TTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTT-------ACAT----------TTATTAG------------------------------------------------------------------------------------------TA-AATTG
droEug1 scf7180000409452:319719-319862 - AGTTAACGAGATCGAGTAATG-------CT------T---------CATA------AATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCA-------ACAT----------TAT----------------------TATA--------------------------------------------------------------------TA-CAAAT
dm3 chr2L:13747719-13747865 - dme-mir-968 Known_mirbase AACCAATGAGTTCAAAGAAAA-------ATT----------------------GTT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCA-------ACACA---------TAAGTAGTGATA--------------------------------------------------------------------------------------A-TGCAA
droSim2 2l:13334253-13334433 - dsi-mir-968 Known_mirbase AATAATTGAGTTCAAAGAAAA-------AATT---------------------GTT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCA-------ACAT----------TAAATAGTGATATATGTCAGAGTATTGTC----------------------------------------------------GGAATAAATATAATAATA-ATCGG
droSec2 scaffold_3:14550-14730 - dse_5 confident AATAATTGAGTTCAAAGAAAA-------AATT---------------------GTT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCA-------ACAT----------TAAATAGTGATATATGTCAGAGTATTGTC----------------------------------------------------GGAATAAATATAATAATA-ATCGG
droYak3 2L:10160028-10160183 - dya_16 confident AATAGTTGAGTTCAAGGAAAA-------GTG----------------------TTT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCA-------ACAT----------TAATTAGTTATTTATTGAAGAGCAT----------------------------------------------------------------------------TATG
droEre2 scaffold_4929:11718887-11719035 + der_23 confident AATAATTGAGTTCAAAGAAAA-------GTT----------------------GTT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCA-------ACAA----------TAATTAGTTCTAT----------------------------------------------------------------------------------ATTA-ATTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGTGATCGAGTTTGAATAGTG-------ATTTAGTTC---------CACA------ATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCA-------ACAGA----------AC----------------------TGTGCGATTAGAGTTATC----------------------------------------------------AATA-GGCAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................TAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................2414936.00493612458458601671
.......................................................................TTAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................................................................241232.00232129196060
........................................................................TAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................................................................23146.004611228140
.......................................................................TTAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................25122.00220019021
........................................................................TAAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................................................................25118.00181214010
.........................................................................AAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................23118.00180315000
........................................................................TAAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................................................................25116.00165110000
.......................................................................TTAAGTAGTATCCATTAAGAGGT................................................................................................................................................................................................23116.0016608020
........................................................................................................................CCTTTTGATGTACTACTTTAAA................................................................................................................................................22111.00111001000
........................................................................TAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................................................................2418.008006020
........................................................................TAAGTAGTATCCATTAAGAGG.................................................................................................................................................................................................2117.007205000
........................................................................TAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................................................................2417.007006010
.......................................................................................................................ACCTTTTGATGTACTACTTTAA.................................................................................................................................................2216.006105000
........................................................................TAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................................................................2416.006006000
........................................................................................................................CCTTTTGATGTACTACTTTAAAA...............................................................................................................................................2315.005401000
............................................................................TAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................2015.005013010
........................................................................TAAGTAGTATCCATTAAGAG..................................................................................................................................................................................................2014.004004000
........................................................................TAAGTAGTATCCATTAAGAGGT................................................................................................................................................................................................2214.004202000
.......................................................................................................................ACCTTTTGATGTACTACT.....................................................................................................................................................1813.003300000
..........................................................................AGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................2212.002011000
.......................................................................................................................ACCTTTTGATGTACTACTTTA..................................................................................................................................................2112.002002000
.........................................................................AAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................................................................2412.002101000
........................................................................TAAGTAGTATCCATTAAGAGGTCGA.............................................................................................................................................................................................2512.002101000
..........................................................................................................................TTTTGATGTACTACTTTA..................................................................................................................................................1812.002200000
.......................................................................................................................ACCTTTTGATGTACTACTTTAAA................................................................................................................................................2312.002200000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................................................................2612.002200000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................................................................2512.002001010
.......................................................................TTAAGTAGTATCCATTAAGAGGTT...............................................................................................................................................................................................2411.001001000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................................................................2511.001010000
.......................................................................TTAAGTAGTATCCATTAAGA...................................................................................................................................................................................................2011.001001000
.......................................................................TTAAGTAGTATCCATTAAGAGGTA...............................................................................................................................................................................................2411.001100000
.......................................................................TTAAGTAGTATCCATTAAGAGG.................................................................................................................................................................................................2211.001001000
.......................................................................TTAAGTAGTATCCATTAAGAGT.................................................................................................................................................................................................2211.001000001
........................................................................TAAGTAGTATCCATTAAGAGGTA...............................................................................................................................................................................................2311.001001000
.........................................................................AAGTAGTATCCATTAAGAGG.................................................................................................................................................................................................2011.001001000
..............................................................................GTATCCATTAAGAGGTCG..............................................................................................................................................................................................1811.001001000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................................................................2511.001001000
........................................................................TAAGTAGTATCCATTAAGAGGTAA..............................................................................................................................................................................................2411.001001000
dp5
AGTGATCGAGTTTGAATAGTG-------ATTTAGTTC---------TACA------ATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCA-------ACAGA----------AC----------------------TGTGCGATTAGAGTTATC----------------------------------------------------AATA-GGCAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................TAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................24136575.0036575111696668028717812000
.......................................................................TTAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................................................................2412621.0026210422020055900000
........................................................................TAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................................................................2311361.0013610261054127820000
.........................................................................AAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................231814.008140126136055011000
.........................................................................AAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................................................................241504.00504011214027900000
........................................................................TAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................................................................241372.003720331005900000
........................................................................TAAGTAGTATCCATTAAGAGGT................................................................................................................................................................................................221316.003160924616000000
........................................................................TAAGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................................................................251244.0024401213609600000
........................................................................TAAGTAGTATCCATTAAGAGG.................................................................................................................................................................................................211191.0019101212805100000
.......................................................................TTAAGTAGTATCCATTAAGAGGT................................................................................................................................................................................................231177.001770213104400000
........................................................................TAAGTAGTATCCATTAAGAG..................................................................................................................................................................................................201161.00161007408700000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................................................................251150.001500113511300000
........................................................................TAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................................................................241102.00102002307900000
........................................................................TAAGTAGTATCCATTAAGA...................................................................................................................................................................................................19196.0096015404100000
.......................................................................................................................ACCTTTTGATGTACTACTTTAAA................................................................................................................................................23183.008306680900000
.........................................................................AAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................................................................24179.007905670700000
........................................................................TAAGTAGTATCCATTAAGAGGC................................................................................................................................................................................................22177.007700770000000
........................................................................TAAGTAGTATCCATTAAGAGGTCGC.............................................................................................................................................................................................25163.006300560700000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................25155.0055061003900000
.......................................................................................................................ACCTTTTGATGTACTACTTTAA.................................................................................................................................................22153.0053063501200000
.......................................................................TTAAGTAGTATCCATTAAGAGG.................................................................................................................................................................................................22153.0053033801200000
........................................................................TAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................................................................24143.004300603700000
..........................................................................AGTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................22131.003105302300000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCT..............................................................................................................................................................................................25128.002803170800000
.......................................................................................................................ACCTTTTGATGTACTACTTTA..................................................................................................................................................21128.002801210600000
.......................................................................TTAAGTAGTATCCATTAAGAGGC................................................................................................................................................................................................23127.002700270000000
........................................................................TAAGTAGTATCCATTAAGAGGTCCC.............................................................................................................................................................................................25127.002700220500000
............................................................................TAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................20122.002201201900000
.........................................................................AAGTAGTATCCATTAAGAGGT................................................................................................................................................................................................21120.0020001001000000
........................................................................TAAGTAGTATCCATTAAGAGGTCGA.............................................................................................................................................................................................25118.001800120600000
.........................................................................AAGTAGTATCCATTAAGAGGTC...............................................................................................................................................................................................22117.001701130300000
........................................................................................................................CCTTTTGATGTACTACTTTAAA................................................................................................................................................22115.00150180600000
......................................................................................................................GACCTTTTGATGTACTACTTTA..................................................................................................................................................22114.00140190400000
.........................................................................AAGTAGTATCCATTAAGAGGTCGTT............................................................................................................................................................................................25113.00130190300000
.............................................................................AGTATCCATTAAGAGGTCG..............................................................................................................................................................................................19113.001301101100000
.......................................................................TTAAGTAGTATCCATTAAGAGGTT...............................................................................................................................................................................................24113.001300301000000
.......................................................................TTAAGTAGTATCCATTAAGA...................................................................................................................................................................................................20113.00130080500000
........................................................................................................................CCTTTTGATGTACTACTTTAAAA...............................................................................................................................................23111.001100100100000
...........................................................................GTAGTATCCATTAAGAGGTCG..............................................................................................................................................................................................21110.001000001000000
.......................................................................TTAAGTAGTATCCATTAAGAG..................................................................................................................................................................................................2119.0090060300000
........................................................................TAAGTAGTATCCATTAAGAGGTT...............................................................................................................................................................................................2319.0090070200000
.......................................................................................................................ACCTTTTGATGTACTACTTTAAAA...............................................................................................................................................2418.0080080000000
......................................................................CTTAAGTAGTATCCATTAAGAGGTC...............................................................................................................................................................................................2518.0080070100000
........................................................................TAAGTAGTATCCATTAAGAGGTA...............................................................................................................................................................................................2317.0070010600000
.........................................................................AAGTAGTATCCATTAAGAGGTCC..............................................................................................................................................................................................2317.0070060100000
........................................................................TAAGTAGTATCCATTAAGAGGTCGTT............................................................................................................................................................................................2617.0070050200000
.......................................................................TTAAGTAGTATCCATTAAGAGGTCA..............................................................................................................................................................................................2516.0060010500000
.........................................................................AAGTAGTATCCATTAAGAGGTCGTC............................................................................................................................................................................................2515.0050040100000
........................................................................TAAGTAGTATCCATTAAGAGGTAC..............................................................................................................................................................................................2415.0050010400000
........................................................................TAAGTAGTATCCATTAAGAC..................................................................................................................................................................................................2015.0050050000000
......................................................................CTTAAGTAGTATCCATTAAGAGGT................................................................................................................................................................................................2415.0050030200000
........................................................................TAAGTAGTATCCATTAAGAGGTCCA.............................................................................................................................................................................................2514.0040000400000
........................................................................TAAGTAGTATCCATTAAGAGGTCGCT............................................................................................................................................................................................2614.0040030100000
..........................................................................AGTAGTATCCATTAAGAGGTCGT.............................................................................................................................................................................................2314.0040400000000
........................................................................TAAGTAGTATCCATTAAGAGGTCGG.............................................................................................................................................................................................2514.0040130000000
.........................................................................AAGTAGTATCCATTAAGA...................................................................................................................................................................................................1814.0040000400000
.........................................................................AAGTAGTATCCATTAAGAGGTCCC.............................................................................................................................................................................................2414.0040040000000
droWil2
TG----------------------------------------------------------ATGCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCA-------ACAAA----------TA----------------------TAGAAAG-----------------------------------TA-TTGAAAAAGTGTTC--A--------TTTG-ATCTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................TAAGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................241104798.001047980156010455191
.........................................................................AAGTAGTAACCTTTAAAGGGTCGT.............................................................................................................................................................................................241516.005160605100
.........................................................................AAGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................231370.0037001703530
........................................................................TAAGTAGTAACCTTTAAAGGGTCGT.............................................................................................................................................................................................251355.003550203521
.......................................................................................................................ATCCTTTAAGTTACTACTTGCA.................................................................................................................................................221330.003300803220
........................................................................TAAGTAGTAACCTTTAAAGGGTCT..............................................................................................................................................................................................241251.002510002510
........................................................................TAAGTAGTAACCTTTAAAGGGTC...............................................................................................................................................................................................231162.001620001620
.......................................................................TTAAGTAGTAACCTTTAAAGGGTC...............................................................................................................................................................................................241103.001030001030
........................................................................TAAGTAGTAACCTTTAAAGGGTCA..............................................................................................................................................................................................241102.001020001011
..........................................................................AGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................22196.0096000960
........................................................................TAAGTAGTAACCTTTAAAGGGTCC..............................................................................................................................................................................................24179.0079000790
........................................................................TAAGTAGTAACCTTTAAAGGGTCGA.............................................................................................................................................................................................25159.0059000590
........................................................................TAAGTAGTAACCTTTAAAGGGTCGC.............................................................................................................................................................................................25141.0041000410
........................................................................TAAGTAGTAACCTTTAAAGGTCG...............................................................................................................................................................................................23130.0030000300
......................................................................................................................GATCCTTTAAGTTACTACTTGC..................................................................................................................................................22128.0028020260
.........................................................................AAGTAGTAACCTTTAAAGGGTCGTT............................................................................................................................................................................................25126.0026010250
........................................................................TAAGTAGTAACCTTTAAAGGGT................................................................................................................................................................................................22118.0018010170
.........................................................................AAGTAGTAACCTTTAAAGGGTCGC.............................................................................................................................................................................................24118.0018000180
................................................................................................TTTGTCCAATTCTTTTAAAGTCG.......................................................................................................................................................................23113.0013010120
........................................................................TAAGTAGTAACCTTTAAAGGGTCGTT............................................................................................................................................................................................26111.0011000110
.......................................................................................................................ATCCTTTAAGTTACTACTTGC..................................................................................................................................................21110.0010000100
.......................................................................TTAAGTAGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................25110.0010000100
............................................................................TAGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................20110.0010000100
........................................................................TAAGTAGTAACCTTTAAAGG..................................................................................................................................................................................................2017.00701060
.......................................................................................................................ATCCTTTAAGTTACTACTTGT..................................................................................................................................................2117.00700070
........................................................................TAAGTAGTAACCTTTAAAGGG.................................................................................................................................................................................................2116.00600060
.........................................................................AAGTAGTAACCTTTAAAGGGT................................................................................................................................................................................................2116.00600060
........................................................................TAAGTAGTAACCTTTAAAGGGTCGTA............................................................................................................................................................................................2616.00600060
..........................................................................AGTAGTAACCTTTAAAGGGTCGTT............................................................................................................................................................................................2415.00501040
..........................................................................AGTAGTAACCTTTAAAGGG.................................................................................................................................................................................................1915.00500050
........................................................................TAAGTAGTAACCTTTAAAGGGTTCG.............................................................................................................................................................................................2515.00500050
........................................................................TAAGTAGTAACCTTTAAAGTCG................................................................................................................................................................................................2214.00400040
.......................................................................TTAAGTAGTAACCTTTAAAGGGT................................................................................................................................................................................................2314.00400040
........................................................................TAAGTAGTAACCTTTAAAG...................................................................................................................................................................................................1914.00400040
.......................................................................................................................ATCCTTTAAGTTACTACTTGCT.................................................................................................................................................2214.00400040
...........................................................................GTAGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................2114.00400040
......................................................................................................................GATCCTTTAAGTTACTACTTGT..................................................................................................................................................2213.00300030
........................................................................................................................TCCTTTAAGTTACTACTTGCAG................................................................................................................................................2213.00301020
.......................................................................TTAAGTAGTAACCTTTAAAGGGTCT..............................................................................................................................................................................................2513.00300030
.........................................................................AAGTAGTAACCTTTAAAGGGTCGTA............................................................................................................................................................................................2512.00200020
.............................................................................................................................................GAATGTGTTTCTGAAATCA-------ACAAA----------A.......................................................................................................2512.00200020
.............................................................................AGTAACCTTTAAAGGGTCG..............................................................................................................................................................................................1912.00200020
.........................................................................AAGTAGTAACCTTTAAAGGGTCGCC............................................................................................................................................................................................2512.00200020
.......................................................................................................................ATCCTTTAAGTTACTACTTGCAA................................................................................................................................................2312.00200020
.......................................................................................................................ATCCTTTAAGTTACTACTTGCAT................................................................................................................................................2312.00200020
........................................................................TAAGTAGTAACCTTTAAAGGGTCCA.............................................................................................................................................................................................2512.00200020
..........................................................................................................................CTTTAAGTTACTACTTGC..................................................................................................................................................1811.00100010
........................................................................TAAGTAGTAACCTTTAAAGGGTCGTTA...........................................................................................................................................................................................2711.00100010
.........................................................................AAGTAGTAACCTTTAAAGGGTC...............................................................................................................................................................................................2211.00100010
.......................................................................................................................ATCCTTTAAGTTACTACTTG...................................................................................................................................................2011.00100010
.......................................................................................................................ATCCTTTAAGTTACTACTTGCC.................................................................................................................................................2211.00100010
......................................................................................................................GATCCTTTAAGTTACTACTTGCA.................................................................................................................................................2311.00100010
.............................................................................................................................................GAATGTGTTTCTGAAATCA-------ACA....................................................................................................................2211.00100010
........................................................................TAAGTAGTAACCTTTAAAGGGTG...............................................................................................................................................................................................2311.00100010
........................................................................TAAGTAGTAACCTTTAAAGGGTT...............................................................................................................................................................................................2311.00100010
.........................................................................AAGTAGTAACCTTTAAAGGGTCTC.............................................................................................................................................................................................2411.00100010
............................................................................TAGTAACCTTTAAAGGGTC...............................................................................................................................................................................................1911.00101000
......................................................................................................................GATCCTTTAAGTTACTACTTG...................................................................................................................................................2111.00100010
........................................................................TAAGTAGTAACCTTTAAAGGGTTT..............................................................................................................................................................................................2411.00100010
..........................................................................AGTAGTAACCTTTAAAGGGTC...............................................................................................................................................................................................2111.00100010
.........................................................................AAGTAGTAACCTTTAAAGGGTCT..............................................................................................................................................................................................2311.00100010
..............................................................................GTAACCTTTAAAGGGTCG..............................................................................................................................................................................................1811.00100010
.........................................................................AAGTAGTAACCTTTAAAGG..................................................................................................................................................................................................1911.00100010
droVir3
ACAAGTA---TTAGAGT-------------GTGATTCTTTTTTTTTTTTTAATTTCAATTATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCA-------GCAAA----------TC----------------------GATAAGA-----------------------------------CAAACTAAAAAATTTAAATC--------ATTG-CTAAGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................TAAGTAGTAACCATTAAGAGGTTG..............................................................................................................................................................................................24130837.00308370071310070143622112111402404000031194274113090115028000001048191945553042360001312864972602110002200013121
.......................................................................................................................ACCTTTTAATGTACTACTTATG.................................................................................................................................................221979.009790005780000000000000000000000000000000710000000114121319152432272520100642100000882200000016192426
........................................................................TAAGTAGTAACCATTAAGAGGTTT..............................................................................................................................................................................................241776.00776000700000100000000000000000000000001000000000000000101000007650000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTT...............................................................................................................................................................................................231183.001830007400000000000000000000000010010012100100000100114734200017610000000000000000001
........................................................................TAAGTAGTAACCATTAAGAGGT................................................................................................................................................................................................221161.00161000360000000000000000000000000000000000000000023610101391019110002920000000000000000100
........................................................................TAAGTAGTAACCATTAAGAGGTTGT.............................................................................................................................................................................................25169.0069000150000000000000000000000000000001320000000000100030310002360000000000000001001
........................................................................TAAGTAGTAACCATTAAGAGG.................................................................................................................................................................................................21160.0060000120000000000000000000000000000000000000000011114553530001160000000100000000001
........................................................................TAAGTAGTAACCATTAAGAGGTTC..............................................................................................................................................................................................24144.004400010000000000000000000000000000000000000000000000000000000430000000000000000000
......................................................................CTTAAGTAGTAACCATTAAGAGGT................................................................................................................................................................................................24144.00440002000000000000000000000000000000000000000104314284335000400000000000000000000
.........................................................................AAGTAGTAACCATTAAGAGGTTG..............................................................................................................................................................................................23136.003600230000000000000000000000000000000100000000000000000000000300000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTA..............................................................................................................................................................................................24133.003300000000001000000000000000000000000000000000000000000000000320000000000000000000
.......................................................................................................................ACCTTTTAATGTACTACTTA...................................................................................................................................................20128.00280004000000000000000000000000000000100000000001104231333000100000001000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTGA.............................................................................................................................................................................................25124.002400010000000000000000000000000000000000000000000000000000000230000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTGC.............................................................................................................................................................................................25124.0024000110000000000000000000000000000000000000000000000000000000130000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTGTT............................................................................................................................................................................................26121.002100040000000000000000000000000000000000000000000000020100002120000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTGTC............................................................................................................................................................................................26121.00210005000000000000000000100000000000000000000000000001113000360000000000000000000
.......................................................................TTAAGTAGTAACCATTAAGAGGTTG..............................................................................................................................................................................................25118.001800000000000000000000000000000000000000000000000001000000000170000000000000000000
..........................................................................AGTAGTAACCATTAAGAGGTTG..............................................................................................................................................................................................22117.001700010000000000000000000000000000000000000000000000000000000160000000000000000000
.......................................................................TTAAGTAGTAACCATTAAGAGGTT...............................................................................................................................................................................................24115.00150008000000000000000000000000000000001000000000000011000000040000000000000000000
........................................................................TAAGTAGTAACCATTAAGA...................................................................................................................................................................................................19111.00110002000000000000000000000000000000000000000000000001000000150000001000000000010
.......................................................................................................................ACCTTTTAATGTACTACTTAT..................................................................................................................................................2119.0090006000000000000000000000000000000000000000000000000000000030000000000000000000
.......................................................................................................................ACCTTTTAATGTACTACTTATT.................................................................................................................................................2217.0070003000000000000000000000000000000000000000000000000010000020000000000000010000
........................................................................TAAGTAGTAACCATTAAGAG..................................................................................................................................................................................................2017.0070003000000000000000000000000000000000000000000001000000000020000000000000010000
........................................................................TAAGTAGTAACCATTAAGAGGTTGTTT...........................................................................................................................................................................................2717.0070000000000000000000000000000000100000000000000001000000000050000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTC...............................................................................................................................................................................................2316.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTGTA............................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000001000100000000220000000000000000000
.......................................................................................................................ACCTTTTAATGTACTACTTATC.................................................................................................................................................2215.0050004000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................TTAAGTAGTAACCATTAAGAGGT................................................................................................................................................................................................2315.0050001000000000000000000000000000000000000000000000001010000200000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGC................................................................................................................................................................................................2215.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CTTTTAATGTACTACTTATGACA..............................................................................................................................................2314.0040000000000000000000000000000000000000000000001000020100000000000000000000000000
................................................................................................TTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATG.................................................................................................................................................3914.0040000000000000000000000000000000000000000000000011010100000000000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTCT..............................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
........................................................................................................................CCTTTTAATGTACTACTTATG.................................................................................................................................................2114.0040003000000000000000000000000000000000000000000100000000000000000000000000000000
......................................................................CTTAAGTAGTAACCATTAAGAGG.................................................................................................................................................................................................2314.0040001000000000000000000000000000000000000000000000010000000110000000000000000000
..............................................................................GTAACCATTAAGAGGTTG..............................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
......................................................................................................................CACCTTTTAATGTACTACTTATG.................................................................................................................................................2314.0040001000000000000000000000000000000100000000000000001001000000000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTTGTCC...........................................................................................................................................................................................2713.0030002000000000000000000000000000000000000000000000001000000000000000000000000000
.............................................................................AGTAACCATTAAGAGGTTG..............................................................................................................................................................................................1913.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................CTTTTAATGTACTACTTATG.................................................................................................................................................2013.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACCTTTTAATGTACTACT.....................................................................................................................................................1813.0030000000000000000000000000000000000000000000000002010000000000000000000000000000
........................................................................TAAGTAGTAACCATTAAGAGGTCC..............................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000020000000000000000010
droAna3
GAAAA--GAGG-------------------TTGAATC---------CTAA------ATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCG-------GCTAA----------AATAAGTTTC--------------------------------------AAGCATTTCAAGCCAAAGTT------------TTC--------------A-TAAATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................TAAGTAGTATCCATTAAAGGGTCG..............................................................................................................................................................................................2412167.00216734691629111441
........................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................201243.00243023310000
........................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................231201.00201015942000
.......................................................................................................................ACCGTTTGATGTACTACTTTAG.................................................................................................................................................22161.00610538000
........................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................22150.00500409001
........................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................................................................19149.00490409000
........................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................................................................24134.00340133000
.......................................................................TTAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................24127.00270261000
........................................................................TAAGTAGTATCCATTAAAGGGTCC..............................................................................................................................................................................................24124.00240519000
........................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................21121.00210201000
........................................................................................................................CCGTTTGATGTACTACTTTAGG................................................................................................................................................2219.009063000
........................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................2419.009007002
........................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................2318.008116000
........................................................................TAAGTAGTATCCATTAAAGGGTCGC.............................................................................................................................................................................................2517.007043000
........................................................................TAAGTAGTATCCATTAAAGGGTCGT.............................................................................................................................................................................................2516.006042000
..........................................................................AGTAGTATCCATTAAAGGGTCG..............................................................................................................................................................................................2216.006024000
.......................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................2316.006051000
.......................................................................TTAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................2115.005050000
.......................................................................................................................ACCGTTTGATGTACTACTTTA..................................................................................................................................................2114.004040000
........................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................................................................1814.004013000
.........................................................................AAGTAGTATCCATTAAAGGGTCG..............................................................................................................................................................................................2314.004022000
........................................................................TAAGTAGTATCCATTAAAGGGC................................................................................................................................................................................................2213.003030000
.......................................................................................................................ACCGTTTGATGTACTACC.....................................................................................................................................................1812.002020000
........................................................................TAAGTAGTATCCATTAAAGGGTCA..............................................................................................................................................................................................2412.002002000
........................................................................TAAGTAGTATCCATTAAAC...................................................................................................................................................................................................1912.002020000
.........................................................................AAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................2212.002020000
.........................................................................AAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................2012.002020000
........................................................................TAAGTAGTATCCATTAAAGC..................................................................................................................................................................................................2012.002020000
.......................................................................TTAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................2212.002020000
.......................................................................................................................ACCGTTTGATGTACTACTTTAC.................................................................................................................................................2211.001010000
.......................................................................................................................ACCGTTTGATGTACTACTTTAGT................................................................................................................................................2311.001010000
.......................................................................TTAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................................................................2511.001010000
........................................................................TAAGTAGTATCCATTAAAGGGTG...............................................................................................................................................................................................2311.001001000
........................................................................TAAGTAGTATCCATTAAAGTCG................................................................................................................................................................................................2211.001010000
........................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................2411.001001000
........................................................................................................................CCGTTTGATGTACTACTTTAGT................................................................................................................................................2211.001010000
.........................................................................................................................CGTTTGATGTACTACTTTAG.................................................................................................................................................2011.001010000
............................................................................TAGTATCCATTAAAGGGTCG..............................................................................................................................................................................................2011.001001000
..........................................................................AGTAGTATCCATTAAAGG..................................................................................................................................................................................................1811.001010000
droBip1
--------------------------------------------------------------GCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCG-------TCCAAGTTGAAAATA----TCTTCC--------------------------------------------------------------AA--------------------ACAA-TATTASizeHit CountTotal NormTotal
No Reads
droKik1
CATAGTGAAGTCCAAGTGCTA-------ATCT----------------------TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCG-------GCTT----------TCA----------------------TATAGA---------ATCACTATCTTGAATTCC-----------------------TGACCTAAAATAAGGACA-TACATSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAAACAAGTCAAATTAAGC-------ACTTTACTC---------AATA------AATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGCTTACTACTTTAAGAAACTCTAGTTATACAGA-------ACAC----------TAT----------------------TATACAAGAAAAGTGTTT----------------------------------------------------TATT-TTTAASizeHit CountTotal NormTotal
No Reads
droEle1
AGTGATTGAGTGCAAAGAATA-------GTTTA---C---------CATT------AGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGTTTA----------AAATAC----------------------------AAT--------------------------------------------------------------AAAAGATTATSizeHit CountTotal NormTotal
No Reads
droRho1
AGTGATCGAGTCCAAGGAATA-------GTTACAGTG---------AATA------AATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGTTTA----------AAGTAG--------------------------------------ATT----------------------------------------------------AATA-ACTAASizeHit CountTotal NormTotal
No Reads
droBia1
ATC----GTGTCC------CACATCCAAAATTAAGTG---------CAAA------TTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCT-------TCAT----------TTTAAAGTAATA----------------------------------------------------------------------GAACAAT--------TT-CAATASizeHit CountTotal NormTotal
No Reads
droTak1
AGTAATCCAGTTCGCATAATA-------GTTTGAGTC---------CAAA------TTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTT-------ACAT----------TTATTAG------------------------------------------------------------------------------------------TA-AATTGSizeHit CountTotal NormTotal
No Reads
droEug1
AGTTAACGAGATCGAGTAATG-------CT------T---------CATA------AATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCA-------ACAT----------TAT----------------------TATA--------------------------------------------------------------------TA-CAAATSizeHit CountTotal NormTotal
No Reads
dm3
AACCAATGAGTTCAAAGAAAA-------ATT----------------------GTT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCA-------ACACA---------TAAGTAGTGATA--------------------------------------------------------------------------------------A-TGCAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................241209122.0020912200000001522800000000000000061000000012120031002051100011120001000000000000000000000000055363523350002040052054210000060000247105027013010025030100000001000554644408833632416041411977320000000000029080081607010100003050002000002610000023003100100138213031505208030003200001664679564040301212656920001441105124121047153426483021401021274011011220159292471401088526443925009011714110325101013457314416123141882930021000
........................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................2314655.0046550000000000000000000000000010000210000000101030000000000000000000000000000000000003114000000000000000000000000005000000000000000000000000000191892392410000001010000000000010100020001002000000000000020000000000000000001010300001112600100000217102110010010531000001500001000031510723000000037000103351179359910310000102000211200000422000160121970000200
.......................................................................................................................ACCTTTTGATGTACTACTTTAA.................................................................................................................................................2212239.002239000010122225000000000000000000000000100000000000000000000030000000000000000000000011744069476790020100010005110300000000016880054000000000000000000000000500260000000000000000000000010000000000000000000000000000000000000000000000000000000400100100001890000000000000000200000000000000000000000000000000565000000000000000000000000100000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................................................................2511719.00171900000000100000000000000000000000001000000000000000000000000000000000000000000000012241000000000100000000000000003500000000000000000000000000784280100000000000000000000010000000000000000000000000000014000000000000000001000000010760040000201116100000000400000010000100000400201500000001000000010190100501000000000000000000000600000104440000000
........................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................2211047.001047000000001000000000000000000000000060000000001000100000000000000000000000000000000001000000000000000000000000000200000000000000000000000000012343012000010000000000000000100000000020000000000000000000000000000000000000001000001033008000069510000000015000000100000000006001640000000000000000098667000000000000000010110001300000206730001010
........................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................241676.0067600000000010000000000000000000000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000003329100000010000000000000000000000000000000000020000000000000000000000000100000000001002000000020175000000000910000010000000000100273000000000000000007322700100000000000000000000300000002210000000
..........................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................221541.0054100000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000002000000000000000000000000000012010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533100000000020000001000000000000021000000000000000001842100100000000000000000000000000000010000000
.......................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................241472.00472000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007600000000010000000000000000000000000000000000000005439410000000000000000000000000000000200000000
.......................................................................................................................ACCTTTTGATGTACTACTTTA..................................................................................................................................................211436.00436000000004300000000000000000000000020000000000000000000000010000000000000000000000251150143400000000200010030000020003511080000000000000000000000002030100000000000000000000000000000000000000000000000000000000000000000000000000000010020000000530000000000000000000000000000000000000000000000000131100000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................................................................251372.003720000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000027003000000000000000000000000000000000000000000000000000000000000000000000001000001011000000029130000000108000000000000000011006600000011000000000926700200000001000000000000600000000020000000
........................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................201307.00307000000000000000000000000000000000061000000000000000000000000000000000000000000000000610000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000001000000000000000000000422510000000000000000000000100000000000000000
........................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................211292.00292000000000100000000000000000000000057000000000000000000000000000000000000000000000020420000000000001000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000010100040000770000000002000000000000000000000100000000000000000719200000000000000000000000000000000010000000
.........................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................231266.00266000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001160000000000000000000000100000010000000000000000000000000000000000000000000000000000000000006400000000010000001000000000000031000000000000000004419400000000000000000000000000000000100000000
........................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................241198.0019800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000171200000000000000000000000000000010000000000000000014011900000000000000000000000000000000100000000
........................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................................................................191162.0016200000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000370000000000000000000000000000000000000000000000000214400000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................................................................251151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021108100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000169001000000000000010000000000000100100000000000000019800000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................................................................181127.0012700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000001000000000000000000012300000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................................................................24197.0097000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001230000000002100000000000000001000000000000000000000145500000000000000000000000100010000000000000
............................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................20151.005100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124000000000000000000000000000000000000000000000000042800000000000000000000000000000000000000000
.......................................................................................................................ACCTTTTGATGTACTACTTTAAA................................................................................................................................................23147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000003230400000000010000010000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CCTTTTGATGTACTACTTTAA.................................................................................................................................................21130.00300000001001000000000000000000000000000000000000000000000000000000000000000000000002031300000000000000000000000000810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................AACCTTTTGATGTACTACTTTAA.................................................................................................................................................23125.00250000000001000000000000000000000000000000000000000000000000000000000000000000000003041000000000000000000000000000330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................................................................26125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000010000000000000100000000000000000031200000000000000000000000100000000000000000
...........................................................................GTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................21124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000011900000000000000000000000000000000000000000
.......................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................25121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
..........................................................................AGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................21120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.............................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................................................................19116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000031000000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGTA............................................................................................................................................................................................26115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020400100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000
..............................................................................GTATCCATTAAAGGGTTG..............................................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
......................................................................................................................AACCTTTTGATGTACTACTTTA..................................................................................................................................................22110.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................ACCTTTTGATGTACTACTTTAAC................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002800000000000000000000000000000000000000000
.........................................................................................................................CTTTTGATGTACTACTTTAA.................................................................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000050200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
AATAATTGAGTTCAAAGAAAA-------AATT---------------------GTT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCA-------ACAT----------TAAATAGTGATATATGTCAGAGTATTGTC----------------------------------------------------GGAATAAATATAATAATA-ATCGGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................24148314.00483142819224941610220233521222503900000
.......................................................................................................................ACCGTTTGATGTACTACTTTAG.................................................................................................................................................2211621.0016211213092000000030700000
........................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................231600.0060000332050096054500000
........................................................................................................................CCGTTTGATGTACTACTTTAGG................................................................................................................................................221172.001720016700000000500000
........................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................241161.001610051000000015500000
........................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................................................................251119.0011900661000011703400000
........................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................221113.001130046102007605100000
.......................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................24186.0086001000000108400000
........................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................................................................25174.007400510000221303300000
.....................................................................................................................CAACCGTTTGATGTACTACTTT...................................................................................................................................................22174.0074007300000000100000
.......................................................................................................................ACCGTTTGATGTACTACTTTA..................................................................................................................................................21157.00571046000000001000000
........................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................20154.00540022007003401800000
.........................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................23148.00480014900000002500000
.......................................................................................................................ACCGTTTGATGTACTACTTTAGA................................................................................................................................................23143.00430031000000001200000
........................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................................................................19131.00310011001200030500000
........................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................................................................24130.00300013000001001600000
........................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................................................................25125.0025006000000001900000
........................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................21123.002300500700210800000
........................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................24120.0020004000000001600000
..........................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................22120.0020001310000000600000
........................................................................................................................CCGTTTGATGTACTACTTTAG.................................................................................................................................................21119.0019001600000000300000
......................................................................................................................AACCGTTTGATGTACTACTTTAG.................................................................................................................................................23119.0019001600000000300000
.......................................................................................................................ACCGTTTGATGTACTACTTTAGC................................................................................................................................................23118.0018001700000000100000
........................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................................................................18117.0017002001300100100000
.....................................................................................................................CAACCGTTTGATGTACTACTTTAG.................................................................................................................................................24111.0011001100000000000000
........................................................................................................................CCGTTTGATGTACTACTTTAGT................................................................................................................................................2219.00900700000000200000
........................................................................TAAGTAGTATCCATTAAAGGGTTGG.............................................................................................................................................................................................2517.00700600000000100000
........................................................................................................................CCGTTTGATGTACTACTTTAGA................................................................................................................................................2217.00700700000000000000
............................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2017.00700500000000200000
.......................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................2316.00600200000000400000
.......................................................................................................................ACCGTTTGATGTACTACTTTAT.................................................................................................................................................2216.00600100000000500000
.............................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................................................................1915.00500200000000300000
........................................................................................................................CCGTTTGATGTACTACTTTAGGT...............................................................................................................................................2315.00500300000000200000
.......................................................................................................................ACCGTTTGATGTACTACTTTAA.................................................................................................................................................2214.00400200000200000000
........................................................................TAAGTAGTATCCATTAAAGGGG................................................................................................................................................................................................2214.00400300000000100000
.......................................................................................................................ACCGTTTGATGTACTACTTT...................................................................................................................................................2014.00400300000000100000
.......................................................................................................................ACCGTTTGATGTACTACTTTAC.................................................................................................................................................2214.00400400000000000000
..............................................................................GTATCCATTAAAGGGTTG..............................................................................................................................................................................................1814.00400300000000100000
........................................................................................................................CCGTTTGATGTACTACTT....................................................................................................................................................1813.00300300000000000000
..........................................................................................................................GTTTGATGTACTACTTTAG.................................................................................................................................................1913.00300300000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGTA............................................................................................................................................................................................2613.00300000000000300000
........................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................................................................2413.00300000000000300000
........................................................................................................................CCGTTTGATGTACTACTTTAGC................................................................................................................................................2213.00300300000000000000
..................................................................................................................AATCAACCGTTTGATGTACTACT.....................................................................................................................................................2312.00200200000000000000
........................................................................TAAGTAGTATCCATTAAAGGGGCT..............................................................................................................................................................................................2412.00200000000000200000
.......................................................................................................................ACCGTTTGATGTACTACTTTAGG................................................................................................................................................2312.00200200000000000000
.......................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2512.00200100000000100000
........................................................................................................................CCGTTTGATGTACTACTTTAGGC...............................................................................................................................................2312.00200200000000000000
........................................................................TAAGTAGTATCCATTAAAGGGTG...............................................................................................................................................................................................2312.00200100000000100000
droSec2
AATAATTGAGTTCAAAGAAAA-------AATT---------------------GTT--CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCA-------ACAT----------TAAATAGTGATATATGTCAGAGTATTGTC----------------------------------------------------GGAATAAATATAATAATA-ATCGGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................241129769.001297691346129123506
........................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................2312934.00293432291415
.......................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................241683.00683106793
........................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................221430.00430014263
........................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................................................................251409.00409104062
........................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................................................................251351.00351003510
........................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................201138.00138001380
.........................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................231125.001251101131
........................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................211116.00116001160
.......................................................................................................................ACCGTTTGATGTACTACTTTAG.................................................................................................................................................221108.00108101070
........................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................................................................25198.009800980
..........................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................22185.008500850
........................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................................................................24173.007310711
........................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................24145.004510440
........................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................24142.004200420
............................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................20135.003510340
........................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................................................................19131.003100310
........................................................................TAAGTAGTATCCATTAAAGGGTTTG.............................................................................................................................................................................................25130.003000300
.......................................................................TTAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................23118.001800180
.......................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................25118.001800180
.......................................................................................................................ACCGTTTGATGTACTACTTTA..................................................................................................................................................21111.001110100
........................................................................TAAGTAGTATCCATTAAAGGGTTGTA............................................................................................................................................................................................26110.00100190
...........................................................................GTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2119.0091080
..........................................................................AGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................2118.0080080
........................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................2317.0070070
........................................................................................................................CCGTTTGATGTACTACTTTAGG................................................................................................................................................2217.0070070
........................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................................................................1817.0070070
................................................................................................TTCTCAACATG-----CAAATCA.......................................................................................................................................................................1815.0050050
..............................................................................GTATCCATTAAAGGGTTG..............................................................................................................................................................................................1814.0040040
........................................................................TAAGTAGTATCCATTAAAGGGTTGG.............................................................................................................................................................................................2514.0040040
.......................................................................................................................ACCGTTTGATGTACTACTTTAGT................................................................................................................................................2313.0030030
........................................................................TAAGTAGTATCCATTAAAGGGTTGAA............................................................................................................................................................................................2613.0030030
..........................................................................AGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................................................................2313.0030030
.......................................................................................................................ACCGTTTGATGTACTACTTAG..................................................................................................................................................2112.0020020
........................................................................TAAGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................................................................2612.0020020
.......................................................................TTAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................2512.0020020
.......................................................................................................................ACCGTTTGATGTACTACTTTAGC................................................................................................................................................2312.0020020
.....................................................................................................................CAACCGTTTGATGTACTACTTT...................................................................................................................................................2212.0020020
.............................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................................................................1912.0020020
..........................................................................AGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................................................................2412.0020020
..........................................................................AGTAGTATCCATTAAAGGGT................................................................................................................................................................................................2012.0021010
.........................................................................AAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................2212.0020020
........................................................................TAAGTAGTATCCATTAAAGGGTTGACT...........................................................................................................................................................................................2711.0010010
............................................................................TAGTATCCATTAAAGGGTTA..............................................................................................................................................................................................2011.0010010
........................................................................TAAGTAGTATCCATTAAAGGGTTGAC............................................................................................................................................................................................2611.0010010
...............AGAAAA-------AATT---------------------GTT--CATGGAAGCT..........................................................................................................................................................................................................................2311.0010010
........................................................................TAAGTAGTATCCATTAAAGGGTTTGC............................................................................................................................................................................................2611.0010010
droYak3
AATAGTTGAGTTCAAGGAAAA-------GTG----------------------TTT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCA-------ACAT----------TAATTAGTTATTTATTGAAGAGCAT----------------------------------------------------------------------------TATGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
........................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................24120896.0020896234563715169144000000
.......................................................................................................................ACCTTTTGATTTACTACTTTAG.................................................................................................................................................221822.0082201796250000000
........................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................231416.00416011922201200000
........................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................221173.0017300138350000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................................................................251116.001160196190000000
.......................................................................................................................ACCTTTTGATTTACTACTTTAGT................................................................................................................................................231102.001020088140000000
........................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................24175.0075008651100000
........................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................20144.0044004130000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................................................................25144.0044004040000000
........................................................................TAAGTAGTATCCATTAAAGGGC................................................................................................................................................................................................22140.0040004000000000
.......................................................................................................................ACCTTTTGATTTACTACTTTAGC................................................................................................................................................23128.0028002800000000
........................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................21128.0028002260000000
.......................................................................................................................ACCTTTTGATTTACTACTTTAGA................................................................................................................................................23120.0020002000000000
.........................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................23120.0020034130000000
.......................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................24120.0020001370000000
.......................................................................................................................ACCTTTTGATTTACTACTTTA..................................................................................................................................................21117.0017011600000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................................................................25117.0017001070000000
.............................................................................................................................................GAATCTCCAGTCAAAGTCA-------AC.....................................................................................................................21117.0017001610000000
........................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................................................................24116.0016002140000000
........................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................23115.0015001500000000
........................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................24115.001500590100000
.......................................................................................................................ACCTTTTGATTTACTACTTTAC.................................................................................................................................................22113.0013001300000000
............................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................20110.0010001000000000
.......................................................................................................................ACCTTTTGATTTACTACTT....................................................................................................................................................1915.00500500000000
.........................................................................................................................CTTTTGATTTACTACTTTAG.................................................................................................................................................2014.00400310000000
..........................................................................................................................TTTTGATTTACTACTTTAG.................................................................................................................................................1914.00400400000000
.......................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2513.00300030000000
..........................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2213.00300210000000
........................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................................................................1913.00300200100000
.............................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................................................................1913.00300210000000
.......................................................................TTAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................2413.00300300000000
........................................................................TAAGTAGTATCCATTAAAGTTG................................................................................................................................................................................................2213.00300300000000
........................................................................TAAGTAGTATCCATTAAAGGGTTTG.............................................................................................................................................................................................2513.00300300000000
.............................................................................................................................................GAATCTCCAGTCAAAGTCA-------ACA....................................................................................................................2212.00200200000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGTT............................................................................................................................................................................................2612.00200200000000
........................................................................TAAGTAGTATCCATTAAAGGGTG...............................................................................................................................................................................................2312.00200110000000
..........................................................................AGTAGTATCCATTAAAGG..................................................................................................................................................................................................1812.00200200000000
........................................................................TAAGTAGTATCCATTAAAGGGTAA..............................................................................................................................................................................................2411.00100010000000
........................................................................TAAGTAGTATCCATTAAAGGGTGT..............................................................................................................................................................................................2411.00100010000000
........................................................................TAAGTAGTATCCATTAAAGGGTTGTGGT..........................................................................................................................................................................................2811.00100100000000
droEre2
AATAATTGAGTTCAAAGAAAA-------GTT----------------------GTT--GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCA-------ACAA----------TAATTAGTTCTAT----------------------------------------------------------------------------------ATTA-ATTGASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
........................................................................TAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2419069.0090698974480768620180
........................................................................TAAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................241393.00393620385000
........................................................................TAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................231210.0021015260166120
.......................................................................................................................ACCGTTTAATGTACTACTTTAA.................................................................................................................................................22198.00981049039000
.........................................................................AAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................23185.008581004000
........................................................................TAAGTAGTATCCATTAAAGGGT................................................................................................................................................................................................22150.0050419026100
.......................................................................TTAAGTAGTATCCATTAAAGGGTT...............................................................................................................................................................................................24123.002313019000
........................................................................TAAGTAGTATCCATTAAAGGGTTGT.............................................................................................................................................................................................25122.00229508000
..........................................................................AGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................22120.002070013000
........................................................................TAAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................24118.001821015000
.......................................................................................................................ACCGTTTAATGTACTACTTTA..................................................................................................................................................21116.001631201000
........................................................................TAAGTAGTATCCATTAAAGGG.................................................................................................................................................................................................21114.00141508000
........................................................................TAAGTAGTATCCATTAAAGG..................................................................................................................................................................................................20110.00100703000
........................................................................TAAGTAGTATCCATTAAAGGGTTA..............................................................................................................................................................................................2419.0090009000
........................................................................TAAGTAGTATCCATTAAAGGGTTGC.............................................................................................................................................................................................2519.0090504000
........................................................................TAAGTAGTATCCATTAAAGGGTTGA.............................................................................................................................................................................................2516.0061104000
........................................................................TAAGTAGTATCCATTAAAGGGTCT..............................................................................................................................................................................................2413.0030003000
.............................................................................AGTATCCATTAAAGGGTTG..............................................................................................................................................................................................1913.0030003000
.......................................................................TTAAGTAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2513.0031002000
........................................................................TAAGTAGTATCCATTAAGA...................................................................................................................................................................................................1932.3370403000
.........................................................................AAGTAGTATCCATTAAAGGGTTT..............................................................................................................................................................................................2312.0022000000
.......................................................................................................................ACCGTTTAATGTACTACTTT...................................................................................................................................................2012.0020200000
.......................................................................................................................ACCGTTTAATGTACTACTTTAAA................................................................................................................................................2312.0020101000
........................................................................................................................CCGTTTAATGTACTACTTTAA.................................................................................................................................................2112.0020200000
............................................................................TAGTATCCATTAAAGGGTTG..............................................................................................................................................................................................2012.0022000000
........................................................................TAAGTAGTATCCATTAAA....................................................................................................................................................................................................1812.0020002000
........................................................................TAAGTAGTATCCATTAAAGGGTTTG.............................................................................................................................................................................................2512.0021100000
........................................................................TAAGTAGTATCCATTAAAGGGTC...............................................................................................................................................................................................2312.0020200000
........................................................................TAAGTAGTATCCATTAAAG...................................................................................................................................................................................................1912.0021100000
.........................................................................AAGTAGTATCCATTAAAGGGTTC..............................................................................................................................................................................................2311.0011000000

Generated: 10/20/2015 at 11:20 PM