ID:

dpe_267

 Coordinate:

scaffold_2:4947760-4947836 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.0 -17.6 -17.6

Flybase annnotation

Antisense to intron [Dper\GL10669-in]

No Repeatable elements found

mature
  1. scaffold_2:4943660-4943681 +
  2. dpe_267  scaffold_2:4947814-4947835 +
star

Sense Strand Reads

CATAATATATATTATTAGAATAAACAGTTTTCTATAAACAACACATCCCTTTACTCTTCATTTTATTGGCCGTGATTAGATTTGATCCAATATCAAGGTTTGCTTACGATTACAAAAGGCTGAAGGGCGAAAATTTCAAATTTCAAATGCTAAACGTGAACGAGAACGTAACGTTCC
***********************************...........(((((((.((((.......(((..(((((.((((((((((.....))))).))))).)))))....))))))).)))))))..............************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 M021
embryo
 V050
head
........................................................................................................TACGATTACAAAAGGCTGAAGGGC................................................. 24 0 2 14.50 29 22 3 1 2 1
........................................................................................................TACGATTACAAAAGGCTGAAGG................................................... 22 0 2 13.00 26 24 1 1 0 0
........................................................................................................TACGATTACAAAAGGCTGAAGGG.................................................. 23 0 2 10.50 21 17 3 1 0 0
........................................................................................................TACGATTACAAAAGGCTGAAGGGCG................................................ 25 0 2 2.50 5 4 1 0 0 0
..............................................................................................................................................TCAAATGCTAAACGTGAACGAGAACG......... 26 0 2 2.50 5 4 1 0 0 0
..................................................TTACTCTTCATTTTATTGGCCGTGA...................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGAAG.................................................... 21 0 2 1.50 3 3 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGAAGGGCGA............................................... 26 0 2 1.50 3 3 0 0 0 0
.............................................................................AGATTTGATCCAATATCAAGG............................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................ACGATTACAAAAGGCTGAAGGGC................................................. 23 0 2 1.00 2 2 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGATGG................................................... 22 1 2 1.00 2 2 0 0 0 0
..................................................TTACTCTTGATTTTATTGGCCGTG....................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................TTCAAATGCTAAACGTGAACGAGAACG......... 27 0 2 1.00 2 2 0 0 0 0
..................................................TTACTCTTCATTTTATTGGCCGT........................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
.................................................................TTGGCCGTGGTTAGATTTGATC.......................................................................................... 22 1 1 1.00 1 0 0 0 1 0
......................................................................................................................................TTCAAATTTCAAATGCTAAACGTGAACGA.............. 29 0 2 1.00 2 1 1 0 0 0
..................................................................TGGCCGTGATTAGATTTGATC.......................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..................................................TTACTCTTCATTTTATTGGCCG......................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...................................................................................GATCCAATATCAAGGTTTGCT......................................................................... 21 0 1 1.00 1 0 0 1 0 0
..................................................TTACTCTTCATTTTATTGGCCGTG....................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
................................................................ATTGGCCGTGGTTAGATTTGATC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
........................................................................................................TACGATTATAAAAGGCTGAAGGG.................................................. 23 1 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGAAGGGCGAA.............................................. 27 0 2 0.50 1 1 0 0 0 0
.........................................................................................................ACGATTACAAAAGGCTGAAGGGCGAAT............................................. 27 1 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTAGAAAAGGCTGAAGCG.................................................. 23 2 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TCAAATGCTAAACGTGAACGAG............. 22 0 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGAGGGGCGAA.............................................. 27 1 2 0.50 1 1 0 0 0 0
.....................................................................................................................................TTTCAAATTTCAAATGCTAAACGTGAA................. 27 0 2 0.50 1 1 0 0 0 0
.......................................................................................................TTACGATTACAAAAGGCTGAAG.................................................... 22 0 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGAAGGCCGA............................................... 26 1 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTAGAAAAGGCTGAAGG................................................... 22 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TCAAATGCTAAACGTGAACGAGA............ 23 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................TCAAATTTCAAATGCTAAACGTGAACGA.............. 28 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TCAAGTGCTAAACGTGAACGAGAACG......... 26 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TCAAATGCTAAACGTGAACGAGAA........... 24 0 2 0.50 1 1 0 0 0 0
........................................................................................................GACGATTACAAAAGGCTGAAGGG.................................................. 23 1 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTACAAAAGGCTGAAGGGCGT............................................... 26 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TCAAATGCTAAACGTGAACGAGAACGT........ 27 0 2 0.50 1 1 0 0 0 0
........................................................................................................TACGATTAGAAAAGGCTGAAG.................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................TCAAATGCGAAACGTGAACGAGAACG......... 26 1 2 0.50 1 1 0 0 0 0
.........................................................................................................ACGATTACAAAAGGCTGAAG.................................................... 20 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................TTTCAAATTTCAAGTGCTAAACGTGAACGA.............. 30 1 2 0.50 1 0 1 0 0 0
........................................................................................................TACGATTACAACAGGCTGAAGGGC................................................. 24 1 2 0.50 1 0 0 1 0 0
......................................................................................................................................................TAAACGTAAACGATAACG......... 18 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GTATTATATATAATAATCTTATTTGTCAAAAGATATTTGTTGTGTAGGGAAATGAGAAGTAAAATAACCGGCACTAATCTAAACTAGGTTATAGTTCCAAACGAATGCTAATGTTTTCCGACTTCCCGCTTTTAAAGTTTAAAGTTTACGATTTGCACTTGCTCTTGCATTGCAAGG
************************************...........(((((((.((((.......(((..(((((.((((((((((.....))))).))))).)))))....))))))).)))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V042
embryo
 V057
head
.........................................................................................TATAGTTCCAAACGAATGCTAATGT............................................................... 25 0 1 113.00 113 113 0 0 0 0
..........................................................................................ATAGTTCCAAACGAATGCTAATGT............................................................... 24 0 1 71.00 71 70 1 0 0 0
....................................TTGTTGTGTAGGGAAATGAGAAGT..................................................................................................................... 24 0 1 18.00 18 17 0 0 1 0
.....................................TGTTGTGTAGGGAAATGAGAAGT..................................................................................................................... 23 0 1 8.00 8 7 1 0 0 0
......................................GTTGTGTAGGGAAATGAGAAGT..................................................................................................................... 22 0 2 7.50 15 11 4 0 0 0
..................................ATTTGTTGTGTAGGGAAATGAGAAGT..................................................................................................................... 26 0 1 7.00 7 7 0 0 0 0
..........................CAAAAGATATTTGTTGTGTAGGGAAAT............................................................................................................................ 27 0 1 6.00 6 4 2 0 0 0
.................................................................................................................................................TTACGATTTGCACTTGCTCTTGCAT....... 25 0 2 6.00 12 12 0 0 0 0
....................................TTGTTGTGTAGGGAAATGAGAAG...................................................................................................................... 23 0 1 6.00 6 6 0 0 0 0
...................................TTTGTTGTGTAGGGAAATGAGAAGT..................................................................................................................... 25 0 1 6.00 6 6 0 0 0 0
..........................................................................................ATAGTTCCAAACGAATGCTAATGTT.............................................................. 25 0 1 5.00 5 4 0 0 0 1
.........................................................................................TATAGTTCCAAACGAAGGCTAATGT............................................................... 25 1 1 5.00 5 5 0 0 0 0
.........................................................................................TATAGTTCCAAACGAATGCTAATG................................................................ 24 0 1 5.00 5 5 0 0 0 0
............................................................................................AGTTCCAAACGAATGCTAATGTTTT............................................................ 25 0 1 5.00 5 5 0 0 0 0
..........................................................................................ATAGTTCCAAACGAAGGCTAATGT............................................................... 24 1 1 5.00 5 5 0 0 0 0
...............................................................................................TCCAAACGAATGCTAATGTTTTCCGACT...................................................... 28 0 1 4.00 4 4 0 0 0 0
...........................................................................................TAGTTCCAAACGAATGCTAATGT............................................................... 23 0 1 4.00 4 1 3 0 0 0
........................................................................................TTATAGTTCCAAACGAATGCTAATGT............................................................... 26 0 1 3.00 3 3 0 0 0 0
...........................................................TAAAATAACCGGCACTAATCTAAACT............................................................................................ 26 0 1 2.00 2 2 0 0 0 0
.........................................................................................TATAGTTCCAAACGAATGCTAAT................................................................. 23 0 1 2.00 2 2 0 0 0 0
...........................................................GAAAATAACCGGCACCAATCTAAACT............................................................................................ 26 2 1 2.00 2 2 0 0 0 0
.................................................................AACCGGCACTAATCTAAACTAGGTT....................................................................................... 25 0 1 2.00 2 2 0 0 0 0
..........................................................................................ATAGTTCCAAACGAATGCTAATGG............................................................... 24 1 1 2.00 2 2 0 0 0 0
..........................................................................................ATAGTTCCAAACGAATGCTAATG................................................................ 23 0 1 2.00 2 2 0 0 0 0
..................................ATTTGTTGTGTAGGGAAATGAGAAG...................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................GCTTTTAAAGTTTAAAGTTTACGAT......................... 25 0 2 2.00 4 3 0 0 1 0
....................................................................................TAGGTTATAGTTCCAAACGAATGCTAAT................................................................. 28 0 1 2.00 2 1 0 1 0 0
...............................................................ATAACCGGCACCAATCTAAACTAGGT........................................................................................ 26 1 1 2.00 2 2 0 0 0 0
.....................................................................GGCACTAATCTAAACTAGGTTATAGTT................................................................................. 27 0 1 2.00 2 2 0 0 0 0
............................................................................................................................CCCGCTTTTAAAGTTTAAAGTTTACGAT......................... 28 0 2 2.00 4 4 0 0 0 0
.........ATAATAATCTTATTTGTCAAAAGA................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0
...................................................................CCGGCACTAATCTAAACTAGGT........................................................................................ 22 0 1 2.00 2 2 0 0 0 0
..............................................GGGAAATGAGAAGTAAAAT................................................................................................................ 19 0 2 1.50 3 1 2 0 0 0
............................................................................................................................................AAAGTTTACGATTTGCACTTGCTCT............ 25 0 2 1.50 3 3 0 0 0 0
.......................................TTGTGTAGGGAAATGAGAAGT..................................................................................................................... 21 0 2 1.50 3 2 1 0 0 0
...............................................................................................................................................GTTTACGATTTGCACTTGCTCTTGCAT....... 27 0 2 1.50 3 3 0 0 0 0
...........................................................................................................................TCCCGCTTTTAAAGTTTAAAGTTTACGAT......................... 29 0 2 1.50 3 3 0 0 0 0
....................................................................CGGCACCAATCTAAACTAGGTT....................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.....................................................................................AGGTTATAGTTCCAAACGAATGCT.................................................................... 24 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................CCGACTTCCCGCTTTTAAAGTTT..................................... 23 0 2 1.00 2 2 0 0 0 0
............................AAAGATATTTGTTGTGGAGGGAAAT............................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
...................................................................................TTAGGTTATAGTTCCAAACGAA........................................................................ 22 1 1 1.00 1 0 0 1 0 0
................................ATATTTGTTGTGTAGGGAAATGAGAA....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................TATAGTTCCAAACGAATGCTAATGG............................................................... 25 1 1 1.00 1 1 0 0 0 0
...................................TTTGTTGTGTAGGGAAATGAGAAG...................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...........................................................TAAAATAACCGGCACTAGTCTAAACT............................................................................................ 26 1 1 1.00 1 1 0 0 0 0
...............................................................ATAACCGGCACTAATCTAAACTAGGT........................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.............................AAGATATTTGTTGTGTAGGGAAA............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
...............................................................ATAACCGGCACCAATCTCAACTAGGT........................................................................................ 26 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TTAAAGTTTACGATTTGCACTTGCTCT............ 27 0 2 1.00 2 2 0 0 0 0
.........................................................................................TATAGTTCCAAACGAATGCTAATGTTT............................................................. 27 0 1 1.00 1 1 0 0 0 0
.....................................................................................AGGTTATAGTTCCAAACGAATGCTAAT................................................................. 27 0 1 1.00 1 1 0 0 0 0
..........................CAAAAGATATTTGTTGTGTAGGGAAA............................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
................................ATATTTGTTGTGTAGGGAAATGAGAAG...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.............................AAGATATTTGTTGTGTAGGGAAAT............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
..............................AGATATTTGTTGTGTAGGGAAAT............................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0
....TATATATAATAATCTTATTGGTCAAAAG................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0
.....................................................................GGCACTAATCTAAACTAGGT........................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................TCCAAACGAATGCTAATGTTTTCCGACTT..................................................... 29 0 1 1.00 1 1 0 0 0 0
................................................................................AAACTAGGTTATAGTTCCAAACGAA........................................................................ 25 0 1 1.00 1 1 0 0 0 0
.......ATATAATAATCTTATTTGT....................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATACTTCCAAACGAATGCTAATGT............................................................... 24 1 1 1.00 1 1 0 0 0 0
...................................ATTGTTGTGTAGGGAAATGAGAAG...................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...................................................................................CTAGGTTATAGTTCCAAACGAATGCT.................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................TTACGATTTGCACTTGCTCTTGCATT...... 26 0 2 1.00 2 2 0 0 0 0
.....................................TGTTGTGTAGGGAAATGAGAA....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................ATGTTGTGTAGGGAAATGAGAAG...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
...................................................ATGAGAAGTAAAATAACCGGCACTAA.................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..........................CAAAAGATATTTGTTGTGGAGGGAAAT............................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0
....................................................TGAGAAGTAAAATAACCGGCACTAATCA................................................................................................. 28 1 1 1.00 1 1 0 0 0 0
.....................................................GAGAAGTAAAATAACCGGCACTAATC.................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................TAGTTCCAAACGAATGCTAATGTT.............................................................. 24 0 1 1.00 1 1 0 0 0 0
......................................GTTGTGTAGGGAAATGAGAAG...................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
......................................................................................................................CGACTTCCCGCTTTTAAAGTTT..................................... 22 0 2 1.00 2 2 0 0 0 0
...........................................................TAAAATAACCGGCACTAATCTAAAC............................................................................................. 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATAGTTCCAAACGAAAGCTAATGT............................................................... 24 1 1 1.00 1 1 0 0 0 0
.....................................TGTTGTGTAGGGAAATGAGAAGTAAA.................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.....................................................GAGAAGTAAAATAACCGGCACTAATCT................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
.....................................TGTTGTGTAGGGAGATGAGAAGT..................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
...........................AAAAGATATTTGTTGTGTAGGGAAAT............................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................GTTATAGTTCCAAACGAATGCTAATGT............................................................... 27 0 1 1.00 1 1 0 0 0 0
...................................TTTGTTGTGTAGGGAATTGAGAAGT..................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................................ACCGGCACCAATCTAAACTAGGT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
...............................................................................TAAACTAGGTTATAGTTCCAAACGAAT....................................................................... 27 0 1 1.00 1 1 0 0 0 0
................................ATATTTGTTGTGTAGGGAAAT............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
........................................TGTGTAGGGAAATGAGAAGT..................................................................................................................... 20 0 2 1.00 2 0 2 0 0 0
....................................................................................TAGGTTATAGTTCCAAACGAATGCT.................................................................... 25 0 1 1.00 1 1 0 0 0 0
...........................................................GAAAATAACCGGCACCAATCTAAA.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0
..................................................................................................................................................TACGATTTGCACTTGCTCTTGCAT....... 24 0 2 1.00 2 2 0 0 0 0
............ATAATCTTATTTGTCAAAAGATAT............................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
..............................AGATATTTGTTGTGTAGGGAAA............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATAGTTCCAAACGAATGCTAATGTTTT............................................................ 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................AATAGTTCCAAACGAATGCTAATGT............................................................... 25 1 1 1.00 1 1 0 0 0 0
................................ATATTTGTTGTGTAGGGAGATGAGAAG...................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
.........................................GTGTAGGGAAATGAGAAGTAAAAT................................................................................................................ 24 0 2 1.00 2 1 1 0 0 0
..............................................................AATAACCGGCACTAATCTAAACTAGGT........................................................................................ 27 0 1 1.00 1 1 0 0 0 0
................................................................................................CCAAACGAATGCTAATGTTTTCCGACTT..................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................TGAAAATAACCGGCACCAATCTAAA.............................................................................................. 25 3 1 1.00 1 1 0 0 0 0
.........................................................................................TATAGTTCCAAACGAAAGCTAATGT............................................................... 25 1 1 1.00 1 1 0 0 0 0
...............................................................ATAACCGGCACTAATCTAAACTAGGTT....................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.....................................................GAGAAGTAAAATAACCGGCACTAAT................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.....................ATTGTCAAAAGATATTTGTTGTGTAG.................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
....................................................TGAGAAGTAAAATAACCGGCACTAAT................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...............................GATATTTGTTGTGTAGGGAAAT............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATAGTTCCAAACGAATGCTAATGTTT............................................................. 26 0 1 1.00 1 1 0 0 0 0
....................................................................CGGCACTAATCTAAACTAGGTT....................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.............................................................AAATAACCGGCACTAATCTAAACTAGGT........................................................................................ 28 0 1 1.00 1 1 0 0 0 0
....................................TTGTTGTGTAGGGAAATGAGAA....................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................AAAGATATTTGTTGTGTAGGGAAAT............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................TTTACGATTTGCACTTGCTCTTGCAT....... 26 0 2 0.50 1 1 0 0 0 0
.....................................TGTTGTGTAGGGAAGTGAGAAGT..................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
............................................................................................................................CCCGCTTTTAAAGTTTAAAGTTTAC............................ 25 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................TGATTTGCACTTGCTCTTGCAT....... 22 1 2 0.50 1 1 0 0 0 0
.............................................................................................................................CCGCTTTTAAAGTTTAAAGTTTACGATT........................ 28 0 2 0.50 1 1 0 0 0 0
.............................................................................................GTTCCAAACGAATGCTAATGT............................................................... 21 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................GCTTTTAAAGTTTAAAGTTTACAAT......................... 25 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................GCTTTTAAAGTTTAAAGTTTACGATG........................ 26 1 2 0.50 1 1 0 0 0 0
....................................TTGTTGTGTAGGGAAGTGAGAAGT..................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
...........................................................................................................CTAATGTTTCCCGACTTCCCGCTTT............................................. 25 1 2 0.50 1 1 0 0 0 0
.........................................GTGTAGGGAAATGAGAAGT..................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................TACGATTTGCACTTGCCCTTGCATT...... 25 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................TAAAGTTTAAAGTTTACGATTTGCA.................... 25 0 2 0.50 1 1 0 0 0 0
................................................................................................................GTTTTCCGACTTCCCGCTTTTAAAGTTT..................................... 28 0 2 0.50 1 1 0 0 0 0
............................................TAGGGAAATGAGAAGTAAAAT................................................................................................................ 21 0 2 0.50 1 0 0 1 0 0
................................................................................................................GTTTTCCGACTTCCCGCTTTTAAAGT....................................... 26 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................AGTTTACGATTTGCACTTGCTCT............ 23 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................TTACGATTTGCACTTGGTCTTGCAT....... 25 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................GCTTTTAAAGTTTAAAGTTTACGA.......................... 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................ATTTGCACTTGATCTTGCAT....... 20 1 2 0.50 1 1 0 0 0 0
....................................................................................................................TCCGACTTCCCGCTTTTAAAGTTT..................................... 24 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................CCGACTTCCCGCTTTTAAAGTTTAAAGT................................ 28 0 2 0.50 1 1 0 0 0 0
....................................................................................................................TCCGACTTCCCGCTTTTAAAGT....................................... 22 0 2 0.50 1 1 0 0 0 0
..........................................TGTAGGGAAATGAGAAGTAAAAT................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................AAAGTTTACGATTTGCACTTGCTC............. 24 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................TTTAAAGTTTAAAGTTTACGATT........................ 23 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................CCGCTTTTAAAGTTTAAAGTTTACGAT......................... 27 0 2 0.50 1 1 0 0 0 0
..................................................................................................................TTTCCGACTTCCCGCTTTTAAAGTTT..................................... 26 0 2 0.50 1 1 0 0 0 0
...............................................................................................TCCAAACGAATGCTAATGT............................................................... 19 0 2 0.50 1 1 0 0 0 0
......................................GTTGTGTAGGGAAGTGAGAAGT..................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
.....................................TGTTGTGTAGGTACATGA.......................................................................................................................... 18 2 15 0.07 1 0 0 0 1 0
.....................................TGTTGTGTAGGGGAATGTTA........................................................................................................................ 20 3 17 0.06 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:4947710-4947886 + dpe_267 CATAATATATATTATTAGAATAAACAGTTTTCTATAAACAACACATCCCTTTACTCTTCATTT---------------------TATTGGCCGTGATTAGATTTGATCCAATATCAAGGTTTGCTTACGATTACAAAAGGCTGAAGGGCGAAAATTTCAAATTTCAAATGCTAAACGTGAACGAGAACGTAACGTTCC
dp5 3:4751166-4751357 + TATAATATATATTATTAGAATAAACAGTTTTCTATAAACAACACATCCCTTTACTCTTCATTTTATATCTGATTAGGCGACTTTTATTGGCCGTGGTTAGATTTGATCCAATATCAAGGTTTGCTTACGATTACAAAAGGCTGAAGGGCGAAAATTTCAAATTTCAAATGCTAAA------CGAGAACGTAACGTTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CATAATATATATTATTAGAATAAACAGTTTTCTATAAACAACACATCCCTTTACTCTTCATTT---------------------TATTGGCCGTGATTAGATTTGATCCAATATCAAGGTTTGCTTACGATTACAAAAGGCTGAAGGGCGAAAATTTCAAATTTCAAATGCTAAACGTGAACGAGAACGTAACGTTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................TACGATTACAAAAGGCTGAAGGGC.................................................24214.50292221103
.............................................................................................................................TACGATTACAAAAGGCTGAAGG...................................................22213.00260241001
.............................................................................................................................TACGATTACAAAAGGCTGAAGGG..................................................23210.50210171003
.............................................................................................................................TACGATTACAAAAGGCTGAAGGGCG................................................2522.505040001
...................................................................................................................................................................TCAAATGCTAAACGTGAACGAGAACG.........2622.505040001
..................................................TTACTCTTCATTT---------------------TATTGGCCGTGA......................................................................................................2512.002020000
.............................................................................................................................TACGATTACAAAAGGCTGAAG....................................................2121.503030000
.............................................................................................................................TACGATTACAAAAGGCTGAAGGGCGA...............................................2621.503030000
..................................................................................................AGATTTGATCCAATATCAAGG...............................................................................2111.001010000
..............................................................................................................................ACGATTACAAAAGGCTGAAGGGC.................................................2321.002020000
..................................................................................................................................................................TTCAAATGCTAAACGTGAACGAGAACG.........2721.002020000
..................................................TTACTCTTCATTT---------------------TATTGGCCGT........................................................................................................2311.001010000
...........................................................................................................................................................TTCAAATTTCAAATGCTAAACGTGAACGA..............2921.002010001
.......................................................................................TGGCCGTGATTAGATTTGATC..........................................................................................2111.001000001
..................................................TTACTCTTCATTT---------------------TATTGGCCG.........................................................................................................2211.001010000
........................................................................................................GATCCAATATCAAGGTTTGCT.........................................................................2111.001001000
..................................................TTACTCTTCATTT---------------------TATTGGCCGTG.......................................................................................................2411.001010000
.............................................................................................................................TACGATTACAAAAGGCTGAAGGGCGAA..............................................2720.501010000
..............................................................................................................................ACGATTACAAAAGGCTGAAGGGCGAAT.............................................2720.501010000
...................................................................................................................................................................TCAAATGCTAAACGTGAACGAG.............2220.501010000
..........................................................................................................................................................TTTCAAATTTCAAATGCTAAACGTGAA.................2720.501010000
............................................................................................................................TTACGATTACAAAAGGCTGAAG....................................................2220.501010000
...................................................................................................................................................................TCAAATGCTAAACGTGAACGAGA............2320.501010000
............................................................................................................................................................TCAAATTTCAAATGCTAAACGTGAACGA..............2820.501010000
...................................................................................................................................................................TCAAATGCTAAACGTGAACGAGAA...........2420.501010000
.............................................................................................................................TACGATTACAAAAGGCTGAAGGGCGT...............................................2620.501010000
...................................................................................................................................................................TCAAATGCTAAACGTGAACGAGAACGT........2720.501010000
..............................................................................................................................ACGATTACAAAAGGCTGAAG....................................................2020.501010000
dp5
TATAATATATATTATTAGAATAAACAGTTTTCTATAAACAACACATCCCTTTACTCTTCATTTTATATCTGATTAGGCGACTTTTATTGGCCGTGGTTAGATTTGATCCAATATCAAGGTTTGCTTACGATTACAAAAGGCTGAAGGGCGAAAATTTCAAATTTCAAATGCTAAA------CGAGAACGTAACGTTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................TTTATATCTGATTAGGCGACT....................................................................................................................2111.0011000000000

Generated: 05/15/2015 at 03:03 PM