dpe_264

Name	Class	Family	Strand
Transib5	DNA	CMC-Transib	+

AACTTTTTAAATATTATTGTTTATAATTTTGTCTTCTTTTGACATTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCTTGAACTTAACATA *********************************.(((((((((((..((.(((.(((((..((((((((.......(((((((......)))))))......))))))))..))))).))).)).....)))))))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V111 male body	V050 head
..................................................TATTCATTGTAAAGGAGATTGTCA..........................................................................................................	24	0	5	5.80	29	29	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGC...................................................	26	0	4	3.75	15	14	0	1	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCA..................................................	27	0	4	2.00	8	8	0	0	0	0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGG.....................................................	25	0	4	1.50	6	6	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCATAAC......................................................................................................	28	0	4	1.25	5	3	2	0	0	0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGGC...................................................	27	0	4	1.00	4	3	0	0	1	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGG....................................................	25	0	4	0.75	3	3	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGG.....................................................	24	0	4	0.75	3	3	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCATA........................................................................................................	26	0	5	0.60	3	3	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCATAA.......................................................................................................	27	0	4	0.50	2	2	0	0	0	0
...................................................ATTCATTGTAAAGGAGATTGTCA..........................................................................................................	23	0	5	0.40	2	2	0	0	0	0
.......................................................................................................TTGATCTTCGGTGCAAAGAAAAGGGC...................................................	26	1	4	0.25	1	1	0	0	0	0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGG....................................................	26	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGGGCAAAGAAAAGGGC...................................................	26	1	4	0.25	1	1	0	0	0	0
......................................................................................................TTTGATCTGTGGTGCAAAGAAAAGGG....................................................	26	1	4	0.25	1	1	0	0	0	0
....................................................................TTGTCATAACTGTGTGTTTTC...........................................................................................	21	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCAC.................................................	28	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGA..........................................................	19	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGT....................................................	25	1	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGAGC...................................................	26	1	4	0.25	1	1	0	0	0	0
........................................................................................................TGATCTTTGGTGCAAAGAAAAGGGC...................................................	25	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTGGGTGCAAAGAAAAGGGC...................................................	26	1	4	0.25	1	1	0	0	0	0
..................................................................................TGTTTTCACGCATGCACATCTTTG..........................................................................	24	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTTTAAAGGAGATTGCCA..........................................................................................................	24	2	5	0.20	1	1	0	0	0	0
......................................................................................................................................TGTCGAAAAAATGCAAGGCATAAATA....................	26	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTC...........................................................................................................	23	0	5	0.20	1	1	0	0	0	0
.................................................ATATTCATTGTAAAGGAGATTGTCA..........................................................................................................	25	1	5	0.20	1	1	0	0	0	0
.................................................CTATTCATTGTAAAGGAGATTGT............................................................................................................	23	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCAT.........................................................................................................	25	0	5	0.20	1	1	0	0	0	0
............................................TTTTACTATTCATTGTAAAGGAGATTG.............................................................................................................	27	0	5	0.20	1	1	0	0	0	0
...................................................................................GTTTTCACGCATGCACATCTT............................................................................	21	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGT............................................................................................................	22	0	5	0.20	1	1	0	0	0	0
...................................................ATTCATTGTAAAGGAGATTGTCATA........................................................................................................	25	0	5	0.20	1	1	0	0	0	0
......................................................................................................................................TGTCGAAAAAATGCAAGGC...........................	19	0	5	0.20	1	1	0	0	0	0
.....................................................................................................................................ATGTCGAAAAAATGCAAGGC...........................	20	0	5	0.20	1	1	0	0	0	0
......................................................................................................................AAGAAAAGGGCACGAATGTCG.........................................	21	0	6	0.17	1	1	0	0	0	0
..........................................................................AGCCTGTGTGTTTTCACGCAT.....................................................................................	21	3	6	0.17	1	0	0	0	0	1

TTGAAAAATTTATAATAACAAATATTAAAACAGAAGAAAACTGTAAAATGATAAGTAACATTTCCTCTAACAGTATTGACACACAAAAGTGCGTACGTGTAGAAACTAGAAACCACGTTTCTTTTCCCGTGCTTACAGCTTTTTTACGTTCCGTATTTATTAAACGAACTTGAATTGTAT **********************************.(((((((((((..((.(((.(((((..((((((((.......(((((((......)))))))......))))))))..))))).))).)).....)))))))))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body
.........................................................................................TGCGTACGTGTAGAAACTAGAAA....................................................................	23	0	5	0.60	3	3
........................................................................................GTGCGTACGTGTAGAAACTAGAAA....................................................................	24	0	5	0.40	2	2
.............................................................TTCCTCTAACAGTATTGACAC..................................................................................................	21	0	4	0.25	1	1
...............................................................CCTCTAACAGTATTGACACA.................................................................................................	20	0	4	0.25	1	1
............................................................TTTCCTCTAACAGTATTGACACAC................................................................................................	24	0	4	0.25	1	1
................................................TGATAAGTAACATTTCCTCTAACAGTAG........................................................................................................	28	1	5	0.20	1	1
..............................CAGAAGAAAACTGTAAAATGATAAGT............................................................................................................................	26	0	5	0.20	1	1
.................................................GATAAGTAACATTTCCTCTAACAGTAT........................................................................................................	27	0	5	0.20	1	1
..........................................................................................GCGTACGTGTAGAAACTAGAAAC...................................................................	23	0	5	0.20	1	1
........................................................................................GTGCGTACGTGTAGAAGCTAGAAAC...................................................................	25	1	5	0.20	1	1
.........................................................................................TGCGTACGTGTAGAAACTAGAAAC...................................................................	24	0	5	0.20	1	1
.......................................ACTGTAAAATGATAAGTAAC.........................................................................................................................	20	0	7	0.14	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_228:14681-14860 +	dpe_264	AACTT--T-------------------TTAAATATTATT--------------GTTTATAAT-TT-TGT---CTTCT-----------------------TTTGACATT------------TTACTATTC-------ATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCT---TGAACTTAACAT-A
dp5	Unknown_group_30:18384-18561 +		AACTT--T-------------------AAATATTATT----------------GTTTATAAT-TT-TGT---CTTCT-----------------------TTTGACATT------------TTACTATTC-------ATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCCAAGAAAAGGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGTT---GCAACTTAACAT-A
droWil2	scf2_1100000004620:99311-99488 +		TACTA--T-------------------CTACATCAATTT------------ACTGTAATAAT-TA-TGT---TTGCT-----------------------TTGCACATT------------TT----TTG-------ATTGTATAGGAGCATCTTATAACTGTGTGTTTTCACGCATCCACATTTTTGATCTTTGGTGCAAAGAAAAAGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGCT---GGCACTAAACAT-A
droMoj3	scaffold_2166:2909-3079 +		GCCTT--T-------------------TTTGGTTGT-----GTTTT--------------AT-T------------------------------TTTT---T----AT----T-TGTAATTTGGCT-TTC-------TTTTGTCAGGTTCTTCTTATCAATGCGAATATTCGCGAATGTTTATTTTTGATATTTGGTGCGCTCAAAAGGGAACTGGTGCCGGCAAAACTAAAATTGTGCTTGATGCAGT---GCAAAAACACAT-T
droAna3	scaffold_13337:21507979-21508156 +		GTGTT--T-------------------GTCGATAATTTCGCATATT--------------AT-TT-TTT--------------------------------CGCTTAT-TTTTATGTTTTC-------AT-------TTTTAATAGGTGCTTCTTGTAAGTGCGAATTTTCACGCATGCACGTCTTTGATATTTGGTGCAAAGAAGAGGGCGTTAATGCAGAAAAAAATCGGAGAGTTACTAGTTTAAT---AGAAGAAAGCAT-T
droBip1	scf7180000396475:6797-6955 -		ATTTG-----------------------TAAATTATT----------ATTTAAAT-TTTGAT-------------------------------------------------------TTTG-------GA-------TTTTGATAGGTGCATCGCAAAAATGTGTTTTTCCACGTCTGCATATTTTTAATATGTGGTGCACAGGTAATGGAACCAATGCCGAAAAAATGAGGAAATTGATTTCCGATGT---GCAAGCGGATAT-T
droKik1	scf7180000298439:8228-8414 -		GTCAT--TCGTGTTGTCATTTCAGTTTACCGAAAATTTTGCTTATT--------------TT-TT-TTT--------------------------------C---AAT-TTTTATATTATT-------GC-------TTTCCTTAGGTGCTTCATGTAACTGTGAGTTTTCACGGATGTACATTTTAGATCTTTGGTGCACTCAAAAGGGGACAAATGCAGAAAAAACAAGTGATGTGATTGGTATAGT---AAAAGA--------
droFic1	scf7180000453162:9049-9236 -		AACTA--TTAATTT-------------GTAAATAACC----------ATTTA-------AAT-TT-T---A-----------------TTTATCT------TTTTCTT------TTGAATCATATT-TGA-------TTTTGGTAGGCGCATCGCAAAAGTGTGTGTTTTCACGGCTTTATATTTTTAATATGTGGTCCACTGAAAATGGAACCAACACACAAAAATTAAAGAAATTGATATCCGATGT---GCAAGCCAGCAT-T
droEle1	scf7180000490719:75270-75448 +		GTGTT--T-------------------GTAGACAATTTTGGATATT--------------CT-TT---------TTTT-----------------------CGCTCAT-TTGTATGTTATC-------AT-------TTTCTACAGGCGCTTCTTCTAACTGCGAATTTTCACGCATGTACATCTTTGTTCTTTGGTGCACAGAAGAGGGCAAAAATGCCGATAAAACTCGAAGAGTGACTACTTTGGT---AGAAGAGAGCAT-T
droRho1	scf7180000771617:11744-11923 +		GTGTT--T-------------------GTCGACAATTGTGCATATT--------------AT-TT---------TTTT-----------------------CGCTCAT-TTTTATGTTATC-------AT-------TTTCTATAGGCGCTTCTTGTAACTGAGAATTTTCACGCATGTACATCCTTGATCTTTGGTGCAGGGAAGAGGGCATGAATGCAGAGAAAACTCGGAGAGAGACTAGTTTGGT---AGAAGAAAGATTTA
droBia1	scf7180000302178:707-894 +		AGTGT--T-------------------TTATTGTTATTT------------AGGTTCAAATT-TT-T---A-----------------T-----TTGTATAGCGTTATTTCTTTATTAATT-------TA-------ATTTGATAGCTGACTGTTTTTATTGTGTCTTTACACTCTTGTACATATTCAATTATTGGTGCACAGTAATCGGCACCAATGCAGAAAAATTACGGAAGGCCATCGAACATGT---GAAGCGCAATAT-T
droTak1	scf7180000412610:12770-12950 -		AAATTATT----TT-------------ATGTA-----TT--------------GTATTTGGA-TT-TT--CCTTTCTT-----------------------CGCTCAT-TTGTTTGTTATA-------AT-------TTTCTATAGGCGCTT---GTAACTGCTAATTTTCACGCATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCAGATAAAACTCGAAGAGTGACAACTTTGGT---AGAAGAAAGCAT-T
droEug1	scf7180000408916:11975-12163 -		GTCTT--T-------------------CTTGTTTGTTC----------------TTATTAGC-TT-TG------------ATATTTAAT-----TTTTAATGCGTTATT------------TCTTTATTA-------ATTTGGTAGGTGACTCTTTTCAATGTGTCTTCCCTCGGTTGTACATATTCAATTATTGGTGTATAACAATCGGCACCAACGAAAAAAAATA-TGGATGGTTATCCATCATGTAAATAGCAGCAATAT-T
dm3	chr3R:400696-400877 +		TGTTA-----------------------------ATTTTGTATATTCATT----TT---AA-AGATTTTTATCTTTTT-----------------------CGTGCATTTTTTTTCGAATT-------TG-------TTTTCATAATCCCTTCTTATAAGTGTGTGTTTTCACGC------ATTTTTGAGTTCTGGTGCATAGAACAGCGCTCGTATGCAGAAAAAGGTCAGGCTGTGCTGAATTCAGT---AATAATTAGCAT-T
droSim2	node_100746:717-909 -		AAGTC--C-------------------GTTTGTGTCTTT--------ATT----TT---TG-TGTTTCGCGTTTGTGTCGT-------------------TATGTCAT-----TTTAAATT-------TATTTTTGCCTATGGAAGACGATTCGGAGCTCTGTGTGTTTTCACACCTATATATTTTTGATTTATGGTGCACAAA-GAAGGTACCCACGGAGAAAAATTACAAGAAGTCATCAATACTGT---GAAATGTAATAT-T
droSec2	scaffold_112:57676-57873 +		TGTGT--T----TT-------------GTGTATAATTTTGTATATTCATT----TT---AA-AGATTTTTAGTTTTTT-----------------------CGTGCCG-TTTTTTCGAATC-------TT-------TTTTCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTCAGCTTTGGTGCACAGAAGAGGGCTCGTATGCAGAAAAGAT-CAGGCTGTGCTGAATTCTGTGCTA-AATTCAGAAT-T
droYak3	v2_chrUn_2706:4103-4289 +		AAATT--T-------------------TCAATGCTC-----------ATTTA-ATTAATTAT-TT-TGT---CAT-------------------TTTT-----------TCTGTGTAAATTTGACT-TGG-------CTTAAGACGGCGATTTGTATCAGTGTGTGTTTGAACGCCATCACATTTTTAATTTATGGTGCACAAAAAAGGGTACCTATACAGAAAAAATACAAGAAATTATCACTGCTGT---ACGAGATGAAATTA
droEre2	scaffold_598:255-292 -		ATCTC--T-------------------TCAAGTGTTTCT--------------ACCTTTAAT-TG-TGA---CTCCT-----------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AACTT--T-------------------TTAAATATTATT--------------GTTTATAAT-TT-TGT---CTTCT-----------------------TTTGACATT------------TTACTATTC-------ATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCT---TGAACTTAACAT-A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTCA..............................................................................................................	24	5	5.80	29	0	29	0	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGC.......................................................	26	4	3.75	15	0	14	1	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCA......................................................	27	4	2.00	8	0	8	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGG.........................................................	25	4	1.50	6	0	6	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTCATAAC..........................................................................................................	28	4	1.25	5	2	3	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGGC.......................................................	27	4	1.00	4	0	3	0	0	0	1
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGG........................................................	25	4	0.75	3	0	3	0	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGG.........................................................	24	4	0.75	3	0	3	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTCATA............................................................................................................	26	5	0.60	3	0	3	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTCATAA...........................................................................................................	27	4	0.50	2	0	2	0	0	0	0
..............................................................................................................................ATTC-------ATTGTAAAGGAGATTGTCA..............................................................................................................	23	5	0.40	2	0	2	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGG........................................................	26	4	0.25	1	0	1	0	0	0	0
......................................................................................................................................................TTGTCATAACTGTGTGTTTTC...............................................................................................	21	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCAC.....................................................	28	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGA..............................................................	19	4	0.25	1	0	1	0	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGT........................................................	25	4	0.25	1	0	1	0	0	0	0
..........................................................................................................................................................................................TGATCTTTGGTGCAAAGAAAAGGGC.......................................................	25	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................................TGTTTTCACGCATGCACATCTTTG..............................................................................	24	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................TGTCGAAAAAATGCAAGGCATAAATA........................	26	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTC...............................................................................................................	23	5	0.20	1	0	1	0	0	0	0
............................................................................................................................CTATTC-------ATTGTAAAGGAGATTGT................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTCAT.............................................................................................................	25	5	0.20	1	0	1	0	0	0	0
...........................................................................................................TT------------TTACTATTC-------ATTGTAAAGGAGATTG.................................................................................................................	27	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................GTTTTCACGCATGCACATCTT................................................................................	21	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGT................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................ATTC-------ATTGTAAAGGAGATTGTCATA............................................................................................................	25	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................TGTCGAAAAAATGCAAGGC...............................	19	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................ATGTCGAAAAAATGCAAGGC...............................	20	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................AAGAAAAGGGCACGAATGTCG.............................................	21	6	0.17	1	0	1	0	0	0	0

dp5

AACTT--T-------------------AAATATTATT----------------GTTTATAAT-TT-TGT---CTTCT-----------------------TTTGACATT------------TTACTATTC-------ATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCCAAGAAAAGGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGTT---GCAACTTAACAT-A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGG........................................................	26	1	55.00	55	0	34	0	0	0	0	1	20	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGC.......................................................	27	1	33.00	33	0	11	0	0	0	0	0	22	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGG.........................................................	25	2	28.00	56	0	39	0	0	1	0	0	16	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAG..........................................................	24	2	9.50	19	0	16	0	0	1	0	0	2	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGG........................................................	25	1	7.00	7	0	7	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAA...........................................................	23	2	6.50	13	0	6	0	0	0	0	0	7	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGGC.......................................................	26	1	4.00	4	0	1	0	0	0	0	0	3	0	0
............................................................................................................................CTATTC-------ATTGTAAAGGAGATTGTCA..............................................................................................................	25	2	3.50	7	0	7	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGGGC.......................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGGG........................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGCA......................................................	28	1	3.00	3	0	1	0	0	0	0	0	2	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAA............................................................	22	2	2.00	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................AAGGAGATTGTCATAACTGTG......................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGGCA......................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................CTATTC-------ATTGTAAAGGAGATTGTC...............................................................................................................	24	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................TAAAGGAGATTGTCATAACTGTGTGTTT.................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................TAAAGGAGATTGTCATAACTGTGTGT...................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................TTC-------ATTGTAAAGGAGATTGTCATAA...........................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................TAAAGGAGATTGTCATAACTGTG......................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GATCTTTGGTGCCAAGAAAAGGG........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................CATT------------TTACTATTC-------ATTGTAAAGGA......................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................TGCCGAAAAAATGCAAGGCATAAATA........................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGG.........................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................TCATAACTGTGTGTTTTCACGCAT.........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGGCACGAATGCCGAAAAAATG.....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAA..........................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................GATTGTCATAACTGTGTGTTTTCACGCA..........................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................ATTC-------ATTGTAAAGGAGATTGTC...............................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGTGTTTTCACGCATGCACATCTT................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTTGGTGCCAAGAAAAGGGC.......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GAAAAGGGCACGAATGCCGAAAAAA.......................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGA.......................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TGCCGAAAAAATGCAAGGCATAAA..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TAACTGTGTGTTTTCACGCATGCACA....................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................TACTATTC-------ATTGTAAAGGAGATTG.................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................GATTGTCATAACTGTGTGTTTTCAC.............................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ACATCTTTGATCTTTGGTGCC..................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................CTATTC-------ATTGTAAAGGAGATTGTCT..............................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCTTTGATCTTTGGTGCCA.................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGA..............................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................TTATT----------------GTTTATAAT-TT-TGT---CTTCT-----------------------TT....................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCCAAGAAA............................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCTTTGATCTTTGGTGCCAAGAAAA...........................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TC-------ATTGTAAAGGAGATTGTCA..............................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TTGATCTTTGGTGCCAAGAAAA...........................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTCACGCATGCACATCTTTGATCT..........................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................ACGCATGCACATCTTTGATCTTTGG......................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......T-------------------AAATATTATT----------------GTTTATAAT-T..........................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ACATCTTTGATCTTTGGTGCCAAGA..............................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CACATCTTTGATCTTTGGT.....................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTTTGATCTTTGGTGCCAAG...............................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTTTGATCTTTGGTGCCAAGAAAA...........................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGG.........................................................	23	2	0.50	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................CTATTC-------ATTGTAAAGGAGATTGTCAA.............................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGA........................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTCA..............................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................ATTC-------ATTGTAAAGGAGATTGTCAA.............................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGCACATCTTTGATCTTTGG......................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CTTTGATCTTTGGTGCCAAGAA.............................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TATTC-------ATTGTAAAGGAGATTGTC...............................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATCTTTGATCTTTGGTGCC..................................................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................TCACGCATGCACATCTTTGATCTTTGG......................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TCTTTGATCTTTGGTGCCAAGAAAAG..........................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droWil2

TACTA--T-------------------CTACATCAATTT------------ACTGTAATAAT-TA-TGT---TTGCT-----------------------TTGCACATT------------TT----TTG-------ATTGTATAGGAGCATCTTATAACTGTGTGTTTTCACGCATCCACATTTTTGATCTTTGGTGCAAAGAAAAAGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGCT---GGCACTAAACAT-A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................GCATCTTATAACTGTGTGTTTTCACGCA..........................................................................................	28	5	0.60	3	0	3	0	0	0
..............................................................................................................................................................................................CTTTGGTGCAAAGAAAAAGGCACGA...................................................	25	4	0.50	2	0	2	0	0	0
................................................................................................................................TG-------ATTGTATAGGAGCATCTTATAACTG........................................................................................................	27	5	0.40	2	0	2	0	0	0
..............................................................................................................................................................................................CTTTGGTGCAAAGAAAAAGGC.......................................................	21	4	0.25	1	0	1	0	0	0
.......................................................................................................................................................................................TTTTGATCTTTGGTGCAAAGAAAAAGG........................................................	27	4	0.25	1	0	1	0	0	0
..........................................................................................................................................................................................TGATCTTTGGTGCAAAGAAAAAGGC.......................................................	25	4	0.25	1	0	0	0	1	0
..............................................................................................................................................................................................CTTTGGTGCAAAGAAAAAGG........................................................	20	4	0.25	1	0	1	0	0	0
.....................................................................................................................................................CATCTTATAACTGTGTGTTTTCACGC...........................................................................................	26	5	0.20	1	0	1	0	0	0
.....................................................................................................................................................CATCTTATAACTGTGTGTTTTCA..............................................................................................	23	5	0.20	1	0	1	0	0	0
................................................................................................................................................................................TCCACATTTTTGATCTTTGGTGCAAAG...............................................................	27	5	0.20	1	0	1	0	0	0
.....................................................................................................................................................CATCTTATAACTGTGTGTTTTCACGCATC........................................................................................	29	5	0.20	1	0	1	0	0	0
................................................................................................................................TG-------ATTGTATAGGAGCATCTTATAAC..........................................................................................................	25	5	0.20	1	0	1	0	0	0
................................................................................................................................................................................TCCACATTTTTGATCTTTGGTGCAAA................................................................	26	5	0.20	1	0	1	0	0	0
...................................................................................................................................................................................ACATTTTTGATCTTTGGTGCAAAG...............................................................	24	5	0.20	1	0	1	0	0	0
....................................................................................................................................................................................................................................GCAAGGCATAAATAATTTGCT---GGCA..........	25	5	0.20	1	0	1	0	0	0
.........................................................................................................................................................................TCACGCATCCACATTTTTGATCTTTGG......................................................................	27	6	0.17	1	0	0	0	1	0
.......................................................................................................................................................TCTTATAACTGTGTGTTTTCACGCA..........................................................................................	25	6	0.17	1	0	1	0	0	0
............................................................................................................................................................................CGCATCCACATTTTTGATCTTTGG......................................................................	24	6	0.17	1	0	1	0	0	0

droMoj3

GCCTT--T-------------------TTTGGTTGT-----GTTTT--------------AT-T------------------------------TTTT---T----AT----T-TGTAATTTGGCT-TTC-------TTTTGTCAGGTTCTTCTTATCAATGCGAATATTCGCGAATGTTTATTTTTGATATTTGGTGCGCTCAAAAGGGAACTGGTGCCGGCAAAACTAAAATTGTGCTTGATGCAGT---GCAAAAACACAT-T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATAT.................................................................................................	24	8	1.00	8	7	0	0	0	1	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATATTC...............................................................................................	26	8	0.88	7	5	0	0	0	2	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATATTCGC.............................................................................................	28	8	0.75	6	6	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTCA..............................................................	23	8	0.63	5	5	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAAG..........................................................	27	8	0.50	4	4	0	0	0	0	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATA..................................................................................................	23	8	0.50	4	3	0	0	0	1	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATATTCG..............................................................................................	27	8	0.50	4	4	0	0	0	0	0
................................................................................................................................................................................TGTTTATTTTTGATATTTGGTGCGC.................................................................	25	8	0.38	3	1	2	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAA...........................................................	26	8	0.38	3	3	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTC...............................................................	22	8	0.38	3	2	0	0	0	1	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTCAA.............................................................	24	8	0.38	3	3	0	0	0	0	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATATTCGCG............................................................................................	29	8	0.38	3	3	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGC.................................................................	20	8	0.25	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................AAAACTAAAATTGTGCTTGATGCAG..................	25	8	0.25	2	2	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAAGG.........................................................	28	8	0.25	2	2	0	0	0	0	0
..................................................................................................................................................GTTCTTCTTATCAATGCGAATATTCGC.............................................................................................	27	8	0.25	2	2	0	0	0	0	0
............................................................................................................................................................................................................................GGCAAAACTAAAATTGTGCTTGATG.....................	25	8	0.25	2	2	0	0	0	0	0
.................................................................................................T---T----AT----T-TGTAATTTGGCT-TTC-------TTTTG............................................................................................................................	25	8	0.25	2	2	0	0	0	0	0
........................................................................................................................TTGGCT-TTC-------TTTTGTCAGGTTCTT..................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
....................................................................................................................................................................................TATTTTTGATATTTGGTGCGCTCAAAAG..........................................................	28	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................................................GTGCGCTCAAAAGGGAACTGGT.................................................	22	8	0.13	1	0	0	0	0	1	0
.............................................................................................................................................................................................TATTTGGTGCGCTCAAAAGGGAACTGG..................................................	27	8	0.13	1	1	0	0	0	0	0
.................................................................................................T---T----AT----T-TGTAATTTGGCT-TTC-------TTTT.............................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................................................................................GGCAAAACTAAAATTGTGCTTGATGCAG..................	28	8	0.13	1	1	0	0	0	0	0
..................................................................................................................................................GTTCTTCTTATCAATGCGAATAT.................................................................................................	23	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................CTTCTTATCAATGCGAATATTCGCG............................................................................................	25	8	0.13	1	1	0	0	0	0	0
..................................................................................................................................................................................TTTATTTTTGATATTTGGTGCGCTC...............................................................	25	8	0.13	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................TGGTGCCGGCAAAACTAAAATTGTGC...........................	26	8	0.13	1	0	0	0	0	1	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAA....................................................................................................	21	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................TTCTTATCAATGCGAATATTCGC.............................................................................................	23	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CAAAACTAAAATTGTGCTTGATG.....................	23	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................TTTTTGATATTTGGTGCGCTC...............................................................	21	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................AATTTGGCT-TTC-------TTTTGTCA.........................................................................................................................	20	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................................CGCTCAAAAGGGAACTGGTGCC..............................................	22	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................CTTCTTATCAATGCGAATATTCGC.............................................................................................	24	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................................................................................................TCAAAAGGGAACTGGTGCCGGCAAAAA......................................	27	8	0.13	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GCAAAACTAAAATTGTGCTTGATG.....................	24	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGATATTTGGTGCGCTT...............................................................	22	8	0.13	1	0	0	0	0	1	0
.................................................................................................................................................GGTTCTTCTTATCAATGCGAATATT................................................................................................	25	8	0.13	1	1	0	0	0	0	0
..................................................................................................................................................................................................GGTGCGCTCAAAAGGGAACTGG..................................................	22	8	0.13	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GTGCTTGATGCAGT---GCAAA.........	19	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................AAAACTAAAATTGTGCTTGATGC....................	23	8	0.13	1	0	0	0	0	1	0
......................................................................................................................................................................................TTTTTGATATTTGGTGCGCTCAATT...........................................................	25	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................................................................................GGCAAAACTAAAATTGTGCTTGATGC....................	26	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................................................ATTTGGTGCGCTCAAAAGGGAAC.....................................................	23	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................TTTTTGATATTTGGTGCGCTCAAAA...........................................................	25	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................TGGTGCCGGCAAAACTAAAATTGTG............................	25	8	0.13	1	1	0	0	0	0	0
..........................................................................................................AT----T-TGTAATTTGGCT-TTC-------TTT..............................................................................................................................	21	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................CTTCTTATCAATGCGAATATTCGCGA...........................................................................................	26	8	0.13	1	1	0	0	0	0	0

droAna3

GTGTT--T-------------------GTCGATAATTTCGCATATT--------------AT-TT-TTT--------------------------------CGCTTAT-TTTTATGTTTTC-------AT-------TTTTAATAGGTGCTTCTTGTAAGTGCGAATTTTCACGCATGCACGTCTTTGATATTTGGTGCAAAGAAGAGGGCGTTAATGCAGAAAAAAATCGGAGAGTTACTAGTTTAAT---AGAAGAAAGCAT-T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................AATCGGAGAGTTACTAGTTTAAT---AGA...........	26	1	2.00	2	1	1	0	0	0	0
..................................................................................................................................................................................................................................AATCGGAGAGTTACTAGTTTAAT---A.............	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................AAAAATCGGAGAGTTACTAGTTTAA..................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................GGTGCAAAGAAGAGGGCGTTAATG................................................	24	3	0.67	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................TAATGCAGAAAAAAATCGGAGAGT.............................	24	6	0.50	3	0	2	1	0	0	0
.................................................................................................................................................................................................TGGTGCAAAGAAGAGGGCGTTA...................................................	22	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................................................ATTTGGTGCAAAGAAGAGGG........................................................	20	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................TAATAGGTGCTTCTTGTAAGTGC.......................................................................................................	23	15	0.33	5	0	1	3	0	0	1
.....................................................................................................................................................................................................GCAAAGAAGAGGGCGTTAATGCAGAAA..........................................	27	3	0.33	1	0	0	0	0	1	0
..........................................................................................................................................................................CACGCATGCACGTCTTTGATATTTGG......................................................................	26	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................................................................ATATTTGGTGCAAAGAAGAGGGCGT.....................................................	25	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................................................................ATATTTGGTGCAAAGAAGAGGGCGTT....................................................	26	3	0.33	1	0	1	0	0	0	0
.............................................................................................................................................................................................TATTTGGTGCAAAGAAGAGGG........................................................	21	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................................................................................TGATATTTGGTGCAAAGAAGAGGGC.......................................................	25	3	0.33	1	0	0	1	0	0	0
..................................................................................................................................................................................................GGTGCAAAGAAGAGGGCGTTAATGC...............................................	25	3	0.33	1	0	1	0	0	0	0
........................................................................................................................................................................................TTTGATATTTGGTGCAAAGAAGAGGGC.......................................................	27	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................................................................................TGATATTTGGTGCAAAGAAGAGGG........................................................	24	3	0.33	1	1	0	0	0	0	0
.........................................................................................................................................................................................TTGATATTTGGTGCAAAGAAGAGGG........................................................	25	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................................................................................TTGATATTTGGTGCAAAGAAGAGGGC.......................................................	26	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................................................TTGGTGCAAAGAAGAGGGCGTTAATGCA..............................................	28	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................................................GTGCAAAGAAGAGGGCGTTAATGC...............................................	24	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................................................................................TTTGGTGCAAAGAAGAGGGCGTTA...................................................	24	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................TTTTCACGCATGCACGTCTTTGATATT.........................................................................	27	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................................................................TTTCACGCATGCACGTCTTTGATATT.........................................................................	26	4	0.25	1	1	0	0	0	0	0
......................................................................................................................................................................TTTTCACGCATGCACGTCTTTGATA...........................................................................	25	5	0.20	1	1	0	0	0	0	0
............................................................................................................................................................................CGCATGCACGTCTTTGATATTTGGT.....................................................................	25	6	0.17	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................TAATGCAGAAAAAAATCGGAGAGC.............................	24	6	0.17	1	0	1	0	0	0	0
............................................................................................................................................TAATAGGTGCTTCTTGTAAGTGCG......................................................................................................	24	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................TAATAGGTGCTTCTTGTAAGTG........................................................................................................	22	15	0.07	1	0	0	1	0	0	0
............................................................................................................................................TAATAGGTGCTTCTTGTAAGT.........................................................................................................	21	16	0.06	1	0	1	0	0	0	0

droBip1

ATTTG-----------------------TAAATTATT----------ATTTAAAT-TTTGAT-------------------------------------------------------TTTG-------GA-------TTTTGATAGGTGCATCGCAAAAATGTGTTTTTCCACGTCTGCATATTTTTAATATGTGGTGCACAGGTAATGGAACCAATGCCGAAAAAATGAGGAAATTGATTTCCGATGT---GCAAGCGGATAT-T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTCAT--TCGTGTTGTCATTTCAGTTTACCGAAAATTTTGCTTATT--------------TT-TT-TTT--------------------------------C---AAT-TTTTATATTATT-------GC-------TTTCCTTAGGTGCTTCATGTAACTGTGAGTTTTCACGGATGTACATTTTAGATCTTTGGTGCACTCAAAAGGGGACAAATGCAGAAAAAACAAGTGATGTGATTGGTATAGT---AAAAGA--------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACTA--TTAATTT-------------GTAAATAACC----------ATTTA-------AAT-TT-T---A-----------------TTTATCT------TTTTCTT------TTGAATCATATT-TGA-------TTTTGGTAGGCGCATCGCAAAAGTGTGTGTTTTCACGGCTTTATATTTTTAATATGTGGTCCACTGAAAATGGAACCAACACACAAAAATTAAAGAAATTGATATCCGATGT---GCAAGCCAGCAT-T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTGTT--T-------------------GTAGACAATTTTGGATATT--------------CT-TT---------TTTT-----------------------CGCTCAT-TTGTATGTTATC-------AT-------TTTCTACAGGCGCTTCTTCTAACTGCGAATTTTCACGCATGTACATCTTTGTTCTTTGGTGCACAGAAGAGGGCAAAAATGCCGATAAAACTCGAAGAGTGACTACTTTGGT---AGAAGAGAGCAT-T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTGTT--T-------------------GTCGACAATTGTGCATATT--------------AT-TT---------TTTT-----------------------CGCTCAT-TTTTATGTTATC-------AT-------TTTCTATAGGCGCTTCTTGTAACTGAGAATTTTCACGCATGTACATCCTTGATCTTTGGTGCAGGGAAGAGGGCATGAATGCAGAGAAAACTCGGAGAGAGACTAGTTTGGT---AGAAGAAAGATTTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGTGT--T-------------------TTATTGTTATTT------------AGGTTCAAATT-TT-T---A-----------------T-----TTGTATAGCGTTATTTCTTTATTAATT-------TA-------ATTTGATAGCTGACTGTTTTTATTGTGTCTTTACACTCTTGTACATATTCAATTATTGGTGCACAGTAATCGGCACCAATGCAGAAAAATTACGGAAGGCCATCGAACATGT---GAAGCGCAATAT-T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATTATT----TT-------------ATGTA-----TT--------------GTATTTGGA-TT-TT--CCTTTCTT-----------------------CGCTCAT-TTGTTTGTTATA-------AT-------TTTCTATAGGCGCTT---GTAACTGCTAATTTTCACGCATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCAGATAAAACTCGAAGAGTGACAACTTTGGT---AGAAGAAAGCAT-T	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTCTT--T-------------------CTTGTTTGTTC----------------TTATTAGC-TT-TG------------ATATTTAAT-----TTTTAATGCGTTATT------------TCTTTATTA-------ATTTGGTAGGTGACTCTTTTCAATGTGTCTTCCCTCGGTTGTACATATTCAATTATTGGTGTATAACAATCGGCACCAACGAAAAAAAATA-TGGATGGTTATCCATCATGTAAATAGCAGCAATAT-T	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGTTA-----------------------------ATTTTGTATATTCATT----TT---AA-AGATTTTTATCTTTTT-----------------------CGTGCATTTTTTTTCGAATT-------TG-------TTTTCATAATCCCTTCTTATAAGTGTGTGTTTTCACGC------ATTTTTGAGTTCTGGTGCATAGAACAGCGCTCGTATGCAGAAAAAGGTCAGGCTGTGCTGAATTCAGT---AATAATTAGCAT-T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................C------ATTTTTGAGTTCTGGTGCAT.................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AAAAAGGTCAGGCTGTGCTGA........................	21	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................TAGAACAGCGCTCGTATGCAG.............................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................ATAGAACAGCGCTCGTATGCA..............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TCAGGCTGTGCTGAATTCAGT---AATAAT........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TCGAATT-------TG-------TTTTCATAATCCCTTC.................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TTTTTTTCGAATT-------TG-------TTTTCATAATCCCT...................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TATGCAGAAAAAGGTCAGGCT...............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................TTTTCACGC------ATTTTTGAGTTCTGGT.....................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTCTGGTGCATAGAACAGCGCTCGT...................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTTTTGAGTTCTGGTGCATAGAACA...........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGAAAAAGGTCAGGCTGTGCTGAATT.....................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................ATAGAACAGCGCTCGTATGCAGAA...........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AAAAGGTCAGGCTGTGCTGA........................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AAAGGTCAGGCTGTGCTG.........................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TTATCTTTTT-----------------------CGTGCATTTTTT.........................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAGTC--C-------------------GTTTGTGTCTTT--------ATT----TT---TG-TGTTTCGCGTTTGTGTCGT-------------------TATGTCAT-----TTTAAATT-------TATTTTTGCCTATGGAAGACGATTCGGAGCTCTGTGTGTTTTCACACCTATATATTTTTGATTTATGGTGCACAAA-GAAGGTACCCACGGAGAAAAATTACAAGAAGTCATCAATACTGT---GAAATGTAATAT-T	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................TTCGGAGCTCTGTGTGTTTTCACACC..........................................................................................	26	1	7.00	7	0	0	2	0	0	0	2	0	2	1	0	0	0	0	0	0	0
..............................TGTGTCTTT--------ATT----TT---TG-TGTTTCGCGTT.................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................TGCCTATGGAAGACGATTCGGAGCTC..........................................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
......................................................TT---TG-TGTTTCGCGTTTGTGTCGT-------------------TA....................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
......................................................................................................................................................TTCGGAGCTCTGTGTGTTTTCACACCTA........................................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTACAAGAAGTCATCAATACTGT---GAAA..........	27	3	1.00	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................TGGAAGACGATTCGGAGCTCTGTGTGTT..................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................CCTATGGAAGACGATTCGGAGCTCTG........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................GAAGACGATTCGGAGCTCTGT.......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................CGCGTTTGTGTCGT-------------------TATGTCAT-----TTTAAA...................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................TTGTGTCGT-------------------TATGTCAT-----TTTAAATT-------..........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TTTTGCCTATGGAAGACGATTCGGAGCT...........................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTTTTGCCTATGGAAGACGATTCGGA..............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTGTGTCTTT--------ATT----TT---TG-TGTTTCGCGTT.................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................TGTGTCTTT--------ATT----TT---TG-TGTTTCGCGT..................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................GACGATTCGGAGCTCTGTGTG....................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TTTGCCTATGGAAGACGATTCGGAGC............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................ATTTTTGCCTATGGAAGACGATTCGGA..............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................TTTTGCCTATGGAAGACGATTCGGAG.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCGGAGCTCTGTGTGTTTTCACACC..........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................TGGAAGACGATTCGGAGCTCTGTGT.....................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GAGAAAAATTACAAGAAGTCA...........................	21	6	0.83	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATATTTTTGATTTATGGTGCACAAA-GA...........................................................	28	4	0.50	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTCACACCTATATATTTTTGATTTATGG......................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTTTGATTTATGGTGCACAAA-GAAGG........................................................	26	5	0.40	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................................................TATGGTGCACAAA-GAAGGTACCCACGGA..............................................	28	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGGTGCACAAA-GAAGGTACC....................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................TGGTGCACAAA-GAAGGTACCCACG................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACGGAGAAAAATTACAAGAAGTCATC.........................	26	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................................CACGGAGAAAAATTACAAGAAGTCAT..........................	26	6	0.33	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................TATATATTTTTGATTTATGGTGCACAAA-GA...........................................................	30	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGAAAAATTACAAGAAGTCATCAATA.....................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................TATATATTTTTGATTTATGGTGCACAA...............................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................TTTTTGATTTATGGTGCACAAA-GAAGG........................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CACGGAGAAAAATTACAAGAAGTCA...........................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................TACCCACGGAGAAAAATTACAAGAAGT.............................	27	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGAAAAATTACAAGAAGTCA...........................	20	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TACCCACGGAGAAAAATTACAAGAAGTCA...........................	29	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CACGGAGAAAAATTACAAGAAGTCATC.........................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TGTGT--T----TT-------------GTGTATAATTTTGTATATTCATT----TT---AA-AGATTTTTAGTTTTTT-----------------------CGTGCCG-TTTTTTCGAATC-------TT-------TTTTCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTCAGCTTTGGTGCACAGAAGAGGGCTCGTATGCAGAAAAGAT-CAGGCTGTGCTGAATTCTGTGCTA-AATTCAGAAT-T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAATT--T-------------------TCAATGCTC-----------ATTTA-ATTAATTAT-TT-TGT---CAT-------------------TTTT-----------TCTGTGTAAATTTGACT-TGG-------CTTAAGACGGCGATTTGTATCAGTGTGTGTTTGAACGCCATCACATTTTTAATTTATGGTGCACAAAAAAGGGTACCTATACAGAAAAAATACAAGAAATTATCACTGCTGT---ACGAGATGAAATTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................CAAGAAATTATCACTGCTGT---ACGAGA........	26	6	2.17	13	0	3	1	0	0	0	0	0	0	0	9
........................................................................................................................................................................................................................................GAAATTATCACTGCTGT---ACGAGATGA.....	26	6	1.83	11	0	1	0	0	0	0	0	0	0	0	10
........................................................................................................................................................................................................................................GAAATTATCACTGCTGT---ACGAGA........	23	6	1.33	8	0	8	0	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTATC............................................................................................................	25	4	1.00	4	0	3	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GAAATTATCACTGCTGT---ACGAGATG......	25	6	0.83	5	0	5	0	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTATCA...........................................................................................................	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTATCAG..........................................................................................................	27	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................TTT-----------TCTGTGTAAATTTGACT-TGG-------CT...............................................................................................................................	25	4	0.75	3	0	2	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCACAAAAAAGGGTACCTATACAGA............................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................TAAATTTGACT-TGG-------CTTAAGACGGC......................................................................................................................	25	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTA..............................................................................................................	23	4	0.50	2	0	1	0	0	0	0	1	0	0	0	0
..........................................................................T-------------------TTTT-----------TCTGTGTAAATTTGACT-TGG-------C................................................................................................................................	26	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTG................................................................................................................	21	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGT...............................................................................................................	22	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................TACAAGAAATTATCACTGCTGT---ACGAGA........	28	6	0.33	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GAAATTATCACTGCTGT---ACGAGAT.......	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................AGTGTGTGTTTGAACGCCATCACATT..................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTATT............................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGTTTGAACGCCATCACATTTTT...............................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................TTTGACT-TGG-------CTTAAGACGGCGATT..................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................CTGTGTAAATTTGACT-TGG-------CT...............................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TAATTTATGGTGCACAAAAAAGGGTA......................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TTAATTTATGGTGCACAAAAAAGGGTA......................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................TGACT-TGG-------CTTAAGACGGCGATTTG................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGG-------CTTAAGACGGCGATTTGTATCAG..........................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................TGCTC-----------ATTTA-ATTAATTAT-TT-TGT---CAT-------------------............................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTAAGACGGCGATTTGTA..............................................................................................................	18	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGG-------CTTAAGACGGCGATTTGTAT.............................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGTTTGAACGCCATCACATTTTTAATT...........................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................T-------------------TTTT-----------TCTGTGTAAATTTGACT-TGG-------CT...............................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTATCAGTG........................................................................................................	29	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................TAAGACGGCGATTTGTATCAGTGTG......................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................T-TGG-------CTTAAGACGGCGATTTGTAT.............................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................T-------------------TTTT-----------TCTGTGTAAATTTGACT-TGG-------CC...............................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TCAGTGTGTGTTTGAACGCCATCACATT..................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................T-----------TCTGTGTAAATTTGACT-TGG-------CT...............................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATTTGTATCAGTGTGTGTTTGAACGCC..........................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TATCACTGCTGT---ACGAGATG......	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TATACAGAAAAAATACAAGAAATTA...........................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATTTGTATCAGTGTGTGTTTGAACGC...........................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GACGGCGATTTGTATCAGTGTGTGTTT.................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATTTGTATCAGTGTGTGTTTGAACGCCA.........................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TAT-TT-TGT---CAT-------------------TTTT-----------TCTGTGTAAATT.................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TACAAGAAATTATCACTGCTGT---ACGA..........	26	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................CAAGAAATTATCACTGCTGT---ACGA..........	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ATCTC--T-------------------TCAAGTGTTTCT--------------ACCTTTAAT-TG-TGA---CTCCT-----------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dpe_264

scaffold_228:14731-14810 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.0	-27.8	-27.7