dpe_263

Name	Class	Family	Strand
Transib5	DNA	CMC-Transib	+

AACTTTTTAAATATTATTGTTTATAATTTTGTCTTCTTTTGACATTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCTTGAACTTAACATA *********************************.(((((((((((..((.(((.(((((..((((((((.......(((((((......)))))))......))))))))..))))).))).)).....)))))))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V111 male body	V050 head
..................................................TATTCATTGTAAAGGAGATTGTCA..........................................................................................................	24	0	5	5.80	29	29	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGC...................................................	26	0	4	3.75	15	14	0	1	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCA..................................................	27	0	4	2.00	8	8	0	0	0	0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGG.....................................................	25	0	4	1.50	6	6	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCATAAC......................................................................................................	28	0	4	1.25	5	3	2	0	0	0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGGC...................................................	27	0	4	1.00	4	3	0	0	1	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGG.....................................................	24	0	4	0.75	3	3	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGG....................................................	25	0	4	0.75	3	3	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCATA........................................................................................................	26	0	5	0.60	3	3	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCATAA.......................................................................................................	27	0	4	0.50	2	2	0	0	0	0
...................................................ATTCATTGTAAAGGAGATTGTCA..........................................................................................................	23	0	5	0.40	2	2	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGA..........................................................	19	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTCGGTGCAAAGAAAAGGGC...................................................	26	1	4	0.25	1	1	0	0	0	0
......................................................................................................TTTGATCTGTGGTGCAAAGAAAAGGG....................................................	26	1	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCAC.................................................	28	0	4	0.25	1	1	0	0	0	0
....................................................................TTGTCATAACTGTGTGTTTTC...........................................................................................	21	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTGGGTGCAAAGAAAAGGGC...................................................	26	1	4	0.25	1	1	0	0	0	0
........................................................................................................TGATCTTTGGTGCAAAGAAAAGGGC...................................................	25	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGGGCAAAGAAAAGGGC...................................................	26	1	4	0.25	1	1	0	0	0	0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGG....................................................	26	0	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGT....................................................	25	1	4	0.25	1	1	0	0	0	0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGAGC...................................................	26	1	4	0.25	1	1	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTCAT.........................................................................................................	25	0	5	0.20	1	1	0	0	0	0
..................................................................................TGTTTTCACGCATGCACATCTTTG..........................................................................	24	0	5	0.20	1	1	0	0	0	0
.................................................ATATTCATTGTAAAGGAGATTGTCA..........................................................................................................	25	1	5	0.20	1	1	0	0	0	0
......................................................................................................................................TGTCGAAAAAATGCAAGGCATAAATA....................	26	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGT............................................................................................................	22	0	5	0.20	1	1	0	0	0	0
.................................................CTATTCATTGTAAAGGAGATTGT............................................................................................................	23	0	5	0.20	1	1	0	0	0	0
...................................................ATTCATTGTAAAGGAGATTGTCATA........................................................................................................	25	0	5	0.20	1	1	0	0	0	0
...................................................................................GTTTTCACGCATGCACATCTT............................................................................	21	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTGTAAAGGAGATTGTC...........................................................................................................	23	0	5	0.20	1	1	0	0	0	0
.....................................................................................................................................ATGTCGAAAAAATGCAAGGC...........................	20	0	5	0.20	1	1	0	0	0	0
......................................................................................................................................TGTCGAAAAAATGCAAGGC...........................	19	0	5	0.20	1	1	0	0	0	0
............................................TTTTACTATTCATTGTAAAGGAGATTG.............................................................................................................	27	0	5	0.20	1	1	0	0	0	0
..................................................TATTCATTTTAAAGGAGATTGCCA..........................................................................................................	24	2	5	0.20	1	1	0	0	0	0
..........................................................................AGCCTGTGTGTTTTCACGCAT.....................................................................................	21	3	6	0.17	1	0	0	0	0	1
......................................................................................................................AAGAAAAGGGCACGAATGTCG.........................................	21	0	6	0.17	1	1	0	0	0	0

TTGAAAAATTTATAATAACAAATATTAAAACAGAAGAAAACTGTAAAATGATAAGTAACATTTCCTCTAACAGTATTGACACACAAAAGTGCGTACGTGTAGAAACTAGAAACCACGTTTCTTTTCCCGTGCTTACAGCTTTTTTACGTTCCGTATTTATTAAACGAACTTGAATTGTAT **********************************.(((((((((((..((.(((.(((((..((((((((.......(((((((......)))))))......))))))))..))))).))).)).....)))))))))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body
.........................................................................................TGCGTACGTGTAGAAACTAGAAA....................................................................	23	0	5	0.60	3	3
........................................................................................GTGCGTACGTGTAGAAACTAGAAA....................................................................	24	0	5	0.40	2	2
...............................................................CCTCTAACAGTATTGACACA.................................................................................................	20	0	4	0.25	1	1
............................................................TTTCCTCTAACAGTATTGACACAC................................................................................................	24	0	4	0.25	1	1
.............................................................TTCCTCTAACAGTATTGACAC..................................................................................................	21	0	4	0.25	1	1
................................................TGATAAGTAACATTTCCTCTAACAGTAG........................................................................................................	28	1	5	0.20	1	1
.................................................GATAAGTAACATTTCCTCTAACAGTAT........................................................................................................	27	0	5	0.20	1	1
..............................CAGAAGAAAACTGTAAAATGATAAGT............................................................................................................................	26	0	5	0.20	1	1
.........................................................................................TGCGTACGTGTAGAAACTAGAAAC...................................................................	24	0	5	0.20	1	1
........................................................................................GTGCGTACGTGTAGAAGCTAGAAAC...................................................................	25	1	5	0.20	1	1
..........................................................................................GCGTACGTGTAGAAACTAGAAAC...................................................................	23	0	5	0.20	1	1
.......................................ACTGTAAAATGATAAGTAAC.........................................................................................................................	20	0	7	0.14	1	1

Species	Coordinate	ID	Alignment
droPer2	scaffold_12128:188-367 +	dpe_263	AACTTTTT-A----AATA---TTATTGTTTAT-AATT----TT------------GTCTTC-----T-------TTTGACA-------TTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAG-GCATAAATAATTTGCTTGA--ACTTAACATA-
dp5	Unknown_group_30:18384-18561 +		AACTT--T-A----AATA---TTATTGTTTAT-AATT----TT------------GTCTTC-----T-------TTTGACA-------TTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCCAAGAAAAGGGCACGAATGCCGAAAAAATGCAAG-GCATAAATAATTTGTTGCA--ACTTAACATA-
droWil2	scf2_1100000004620:99324-99488 +		AATTTACT-G-----TA-------------AT-AATT----AT------------GTTTGC-----T-------TTGCACA-------TTTTTTGATT----GTATAGGAGCATCTTATAACTGTGTGTTTTCACGCATCCACATTTTTGATCTTTGGTGCAAAGAAAAAGGCACGAATGCCGAAAAAATGCAAG-GCATAAATAATTTGCTGGC--ACTAAACATA-
droMoj3	scaffold_2166:2930-3079 +		TTTTTTTA-------------------TTTGT-AATT----T----------------------------------------------GGCTTTCTTT----TGTCAGGTTCTTCTTATCAATGCGAATATTCGCGAATGTTTATTTTTGATATTTGGTGCGCTCAAAAGGGAACTGGTGCCGGCAAAACTAAAA-TTGTGCTTGATGCAGTGCA--AAAACACATT-
droAna3	scaffold_13337:21507993-21508156 +		TTT----C-G----CATA---T-----------TATT---------------------TTT-----TCGCTTATTTTTATG-------TTTTCATTTT----TAATAGGTGCTTCTTGTAAGTGCGAATTTTCACGCATGCACGTCTTTGATATTTGGTGCAAAGAAGAGGGCGTTAATGCAGAAAAAAATCGGA-GAGTTACTAGTTTAATAGA--AGAAAGCATT-
droBip1	scf7180000393434:8774-8937 +		TTT----T-G---AAAT----------------ATTT--------------------TTAG-----TTATTCATTTCATTG--------AAATTCACT----TTTTAGAAGATTCCCATAAGTGTGCATTTACACGACTATATATTTTTGATCTTTGGTGTGCAGAAGGTGGCACCAACGCTGAAAGATTAAAAAAAAATTGCTGAATTTATGCA--AGAGCAAATT-
droKik1	scf7180000301721:3032-3197 +		AAAATTTT-G----CTTA---T-----------TATT--------------------TTTT-----TC---AATTTTTATG-------TTATCGCTTT----CTTTAGGTGCTTCATGTAACTGTGAATTTTCAGGGATGTACATTTTTGATCTTTGGTGCACTTAAAAGGAAGCAAATGCAAAAAAAACTCGTG-ATGTGAATAATTTAGTAAA--AGAAAGTATA-
droFic1	scf7180000453574:5902-6082 +		CTTTTACTTG-----AAA---T-----------TATT----TTAATTACTTTTTCGTTTTT-----T-------TA---TAATATTT-GTATGAATTC----CCAAAGGAGATTCGTATCATTGTATGTTTTCACGACAATATATTTTGAATTTATGGTGCACCAAAGATGGTAGCAACGCTGCGAAATTACGGG-AAACTATCGAGGATGTACA--AAATAATACT-
droEle1	scf7180000490366:7254-7420 +		AATTT--T-G----GATA---T-----------TCTT--------------------TTTT-----TCGCTCATTTGTATG-------TTATCATTTT----CTATAGGCGCTTCTTGTAACTGCGAATTTTCACGTATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCCGATAAAACTCGAA-AAGTGACTACTTTGGTAGA--AGAGAGCATT-
droRho1	scf7180000771617:11758-11923 +		TTG----T-G----CATA---T-----------TATT--------------------TTTT-----TCGCTCATTTTTATG-------TTATCATTTT----CTATAGGCGCTTCTTGTAACTGAGAATTTTCACGCATGTACATCCTTGATCTTTGGTGCAGGGAAGAGGGCATGAATGCAGAGAAAACTCGGA-GAGAGACTAGTTTGGTAGA--AGAAAGATTTA
droBia1	scf7180000302034:954-1106 +		AAATTTTT-T----CTTA---T-----------TATT--------------------T-TT-----TC---AATTTTTATG-------TTATTGCTTT----CTTTAGGTGCTCCATGTAACTGTGAATTTTCG---ATGTACATTTTTGATCTTTGGTGGACTCAAAAGGGGACAAATGCAGGAAAAACTCGTG-AATTGATTGG-----TA------TAAAAAAA-
droTak1	scf7180000412709:16860-17046 +		AACTATTA-A----TTTA---T-----------AAATTGTTATTAAAATTTT---GTTTATTTTTCC-------TT---TTGAATCA-TATTTGATTT----TGGTAGGTGCATCGCAAAAGTGTGTGTTTCCACGTCATTACATTTTTAATTCGTGGTGCACGGAAAATGGAACCAACGCTGAAAAATTAAAGA-AATTGATTTCCGATATGCA--AGCTACCATT-
dm3	chr3RHet:1446303-1446497 +		ATCTTCCATGTTAATTTACCTT-----------TTATTATATTAAACAATAA---GTATATTTATTT-------GT---TTAAATTTATTTTTGTTTA----TGGAAGATGATTCAAAGCTCTGTGTGTTTTCACATCTATATATTTTTGATTTGTGGTGCACAAAGAGGGGTACCCACGAAGAAAATATACAAA-AATTCATCAATATTGTGAA--ATGTAATAT--
droSim2	2r:851102-851270 +		AATTTAAA-G-----AA-------------ATTTTTA--------------------TTTT-----TCGCGAATTTTTTTC-------GAATTTGTTT----TCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTTAGCTTTGGTGTACAAAAGAGGGCTCGTATGCAGAAAAAGCTGAGG-CTGTGCTGAATTCAGTAAT--AATTAGCATT-
droSec2	scaffold_112:57692-57873 +		TTT----T-G----TATA---TTCATTTTAAA-GAT--------------TTTTAGTTTTT-----TCGTGCCGTTTTTTC-------GAATCTTTTT----TCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTCAGCTTTGGTGCACAGAAGAGGGCTCGTATGCAGAAAAGAT-CAGG-CTGTGCTGAATTCTGTGCTAAATTCAGAATT-
droYak3	v2_chrUn_2706:4103-4289 +		AAATTTTC-A----ATGC---T-----------CATTTA-ATTAATTATTTT---GTCATTTTTTCT-------GT---GTAAATTT-GACTTGGCTT----AAGACGGCGATTTGTATCAGTGTGTGTTTGAACGCCATCACATTTTTAATTTATGGTGCACAAAAAAGGGTACCTATACAGAAAAAATACAAG-AAATTATCACTGCTGTACG--AGATGAAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

AACTTTTT-A----AATA---TTATTGTTTAT-AATT----TT------------GTCTTC-----T-------TTTGACA-------TTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAG-GCATAAATAATTTGCTTGA--ACTTAACATA-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................TATTCATTGTAAAGGAGATTGTCA..............................................................................................................	24	5	5.80	29	0	29	0	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGC.......................................................	26	4	3.75	15	0	14	1	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCA......................................................	27	4	2.00	8	0	8	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGG.........................................................	25	4	1.50	6	0	6	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTCATAAC..........................................................................................................	28	4	1.25	5	2	3	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGGC.......................................................	27	4	1.00	4	0	3	0	0	0	1
...................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGG.........................................................	24	4	0.75	3	0	3	0	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGG........................................................	25	4	0.75	3	0	3	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTCATA............................................................................................................	26	5	0.60	3	0	3	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTCATAA...........................................................................................................	27	4	0.50	2	0	2	0	0	0	0
...............................................................................................ATTCATTGTAAAGGAGATTGTCA..............................................................................................................	23	5	0.40	2	0	2	0	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCAAAGA..............................................................	19	4	0.25	1	0	1	0	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCAC.....................................................	28	4	0.25	1	0	1	0	0	0	0
................................................................................................................TTGTCATAACTGTGTGTTTTC...............................................................................................	21	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................TGATCTTTGGTGCAAAGAAAAGGGC.......................................................	25	4	0.25	1	0	1	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGG........................................................	26	4	0.25	1	0	1	0	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGT........................................................	25	4	0.25	1	0	1	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTCAT.............................................................................................................	25	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................TGTTTTCACGCATGCACATCTTTG..............................................................................	24	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................................................................TGTCGAAAAAATGCAAG-GCATAAATA.......................	26	5	0.20	1	0	1	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGT................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
.............................................................................................CTATTCATTGTAAAGGAGATTGT................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
...............................................................................................ATTCATTGTAAAGGAGATTGTCATA............................................................................................................	25	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................GTTTTCACGCATGCACATCTT................................................................................	21	5	0.20	1	0	1	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTC...............................................................................................................	23	5	0.20	1	0	1	0	0	0	0
.................................................................................................................................................................................ATGTCGAAAAAATGCAAG-GC..............................	20	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................................................................TGTCGAAAAAATGCAAG-GC..............................	19	5	0.20	1	0	1	0	0	0	0
........................................................................................TTTTACTATTCATTGTAAAGGAGATTG.................................................................................................................	27	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................................................AAGAAAAGGGCACGAATGTCG.............................................	21	6	0.17	1	0	1	0	0	0	0

dp5

AACTT--T-A----AATA---TTATTGTTTAT-AATT----TT------------GTCTTC-----T-------TTTGACA-------TTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCCAAGAAAAGGGCACGAATGCCGAAAAAATGCAAG-GCATAAATAATTTGTTGCA--ACTTAACATA-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGG........................................................	26	1	55.00	55	0	34	0	0	0	0	1	20	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGC.......................................................	27	1	33.00	33	0	11	0	0	0	0	0	22	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGG.........................................................	25	2	28.00	56	0	39	0	0	1	0	0	16	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAG..........................................................	24	2	9.50	19	0	16	0	0	1	0	0	2	0	0
...................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGG........................................................	25	1	7.00	7	0	7	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAA...........................................................	23	2	6.50	13	0	6	0	0	0	0	0	7	0	0
...................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGGC.......................................................	26	1	4.00	4	0	1	0	0	0	0	0	3	0	0
.............................................................................................CTATTCATTGTAAAGGAGATTGTCA..............................................................................................................	25	2	3.50	7	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGGGC.......................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGGG........................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGCA......................................................	28	1	3.00	3	0	1	0	0	0	0	0	2	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAA............................................................	22	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................AAGGAGATTGTCATAACTGTG......................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGGCA......................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................CTATTCATTGTAAAGGAGATTGTC...............................................................................................................	24	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................TAAAGGAGATTGTCATAACTGTGTGTTT.................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................TAAAGGAGATTGTCATAACTGTGTGT...................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
................................................................................................TTCATTGTAAAGGAGATTGTCATAA...........................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TAAAGGAGATTGTCATAACTGTG......................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GATCTTTGGTGCCAAGAAAAGGG........................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................CA-------TTTTACTATTCATTGTAAAGGA......................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................................................................TGCCGAAAAAATGCAAG-GCATAAATA.......................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGG.........................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................TCATAACTGTGTGTTTTCACGCAT.........................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GGGCACGAATGCCGAAAAAATG.....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAA..........................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................GATTGTCATAACTGTGTGTTTTCACGCA..........................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................ATTCATTGTAAAGGAGATTGTC...............................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................TGTGTTTTCACGCATGCACATCTT................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTTGGTGCCAAGAAAAGGGC.......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................GAAAAGGGCACGAATGCCGAAAAAA.......................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGA.......................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGCCGAAAAAATGCAAG-GCATAAA.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TAACTGTGTGTTTTCACGCATGCACA....................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................TACTATTCATTGTAAAGGAGATTG.................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................GATTGTCATAACTGTGTGTTTTCAC.............................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACATCTTTGATCTTTGGTGCC..................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................CTATTCATTGTAAAGGAGATTGTCT..............................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCTTTGATCTTTGGTGCCA.................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGA..............................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................TTATTGTTTAT-AATT----TT------------GTCTTC-----T-------TT........................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................TTGATCTTTGGTGCCAAGAAA............................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCTTTGATCTTTGGTGCCAAGAAAA...........................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TCATTGTAAAGGAGATTGTCA..............................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TTGATCTTTGGTGCCAAGAAAA...........................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTCACGCATGCACATCTTTGATCT..........................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................ACGCATGCACATCTTTGATCTTTGG......................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......T-A----AATA---TTATTGTTTAT-AATT----...........................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACATCTTTGATCTTTGGTGCCAAGA..............................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................CACATCTTTGATCTTTGGT.....................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................CTTTGATCTTTGGTGCCAAG...............................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................CTTTGATCTTTGGTGCCAAGAAAA...........................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGG.........................................................	23	2	0.50	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................CTATTCATTGTAAAGGAGATTGTCAA.............................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGA........................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTCA..............................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................ATTCATTGTAAAGGAGATTGTCAA.............................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TGCACATCTTTGATCTTTGG......................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................CTTTGATCTTTGGTGCCAAGAA.............................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TATTCATTGTAAAGGAGATTGTC...............................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................ATCTTTGATCTTTGGTGCC..................................................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................TCACGCATGCACATCTTTGATCTTTGG......................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCTTTGATCTTTGGTGCCAAGAAAAG..........................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droWil2

AATTTACT-G-----TA-------------AT-AATT----AT------------GTTTGC-----T-------TTGCACA-------TTTTTTGATT----GTATAGGAGCATCTTATAACTGTGTGTTTTCACGCATCCACATTTTTGATCTTTGGTGCAAAGAAAAAGGCACGAATGCCGAAAAAATGCAAG-GCATAAATAATTTGCTGGC--ACTAAACATA-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................GCATCTTATAACTGTGTGTTTTCACGCA..........................................................................................	28	5	0.60	3	0	3	0	0	0
........................................................................................................................................................CTTTGGTGCAAAGAAAAAGGCACGA...................................................	25	4	0.50	2	0	2	0	0	0
.............................................................................................TGATT----GTATAGGAGCATCTTATAACTG........................................................................................................	27	5	0.40	2	0	2	0	0	0
........................................................................................................................................................CTTTGGTGCAAAGAAAAAGGC.......................................................	21	4	0.25	1	0	1	0	0	0
.................................................................................................................................................TTTTGATCTTTGGTGCAAAGAAAAAGG........................................................	27	4	0.25	1	0	1	0	0	0
....................................................................................................................................................TGATCTTTGGTGCAAAGAAAAAGGC.......................................................	25	4	0.25	1	0	0	0	1	0
........................................................................................................................................................CTTTGGTGCAAAGAAAAAGG........................................................	20	4	0.25	1	0	1	0	0	0
...............................................................................................................CATCTTATAACTGTGTGTTTTCACGC...........................................................................................	26	5	0.20	1	0	1	0	0	0
...............................................................................................................CATCTTATAACTGTGTGTTTTCA..............................................................................................	23	5	0.20	1	0	1	0	0	0
..........................................................................................................................................TCCACATTTTTGATCTTTGGTGCAAAG...............................................................	27	5	0.20	1	0	1	0	0	0
...............................................................................................................CATCTTATAACTGTGTGTTTTCACGCATC........................................................................................	29	5	0.20	1	0	1	0	0	0
.............................................................................................TGATT----GTATAGGAGCATCTTATAAC..........................................................................................................	25	5	0.20	1	0	1	0	0	0
..........................................................................................................................................TCCACATTTTTGATCTTTGGTGCAAA................................................................	26	5	0.20	1	0	1	0	0	0
.............................................................................................................................................ACATTTTTGATCTTTGGTGCAAAG...............................................................	24	5	0.20	1	0	1	0	0	0
..............................................................................................................................................................................................GCAAG-GCATAAATAATTTGCTGGC--A..........	25	5	0.20	1	0	1	0	0	0
...................................................................................................................................TCACGCATCCACATTTTTGATCTTTGG......................................................................	27	6	0.17	1	0	0	0	1	0
.................................................................................................................TCTTATAACTGTGTGTTTTCACGCA..........................................................................................	25	6	0.17	1	0	1	0	0	0
......................................................................................................................................CGCATCCACATTTTTGATCTTTGG......................................................................	24	6	0.17	1	0	1	0	0	0

droMoj3

TTTTTTTA-------------------TTTGT-AATT----T----------------------------------------------GGCTTTCTTT----TGTCAGGTTCTTCTTATCAATGCGAATATTCGCGAATGTTTATTTTTGATATTTGGTGCGCTCAAAAGGGAACTGGTGCCGGCAAAACTAAAA-TTGTGCTTGATGCAGTGCA--AAAACACATT-	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................GGTTCTTCTTATCAATGCGAATAT.................................................................................................	24	8	1.00	8	7	0	0	0	1	0
...........................................................................................................GGTTCTTCTTATCAATGCGAATATTC...............................................................................................	26	8	0.88	7	5	0	0	0	2	0
...........................................................................................................GGTTCTTCTTATCAATGCGAATATTCGC.............................................................................................	28	8	0.75	6	6	0	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTCA..............................................................	23	8	0.63	5	5	0	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAAG..........................................................	27	8	0.50	4	4	0	0	0	0	0
...........................................................................................................GGTTCTTCTTATCAATGCGAATA..................................................................................................	23	8	0.50	4	3	0	0	0	1	0
...........................................................................................................GGTTCTTCTTATCAATGCGAATATTCG..............................................................................................	27	8	0.50	4	4	0	0	0	0	0
..........................................................................................................................................TGTTTATTTTTGATATTTGGTGCGC.................................................................	25	8	0.38	3	1	2	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAA...........................................................	26	8	0.38	3	3	0	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTC...............................................................	22	8	0.38	3	2	0	0	0	1	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTCAA.............................................................	24	8	0.38	3	3	0	0	0	0	0
...........................................................................................................GGTTCTTCTTATCAATGCGAATATTCGCG............................................................................................	29	8	0.38	3	3	0	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGC.................................................................	20	8	0.25	2	2	0	0	0	0	0
.........................................................................................................................................................................................AAAACTAAAA-TTGTGCTTGATGCAG.................	25	8	0.25	2	2	0	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAAGG.........................................................	28	8	0.25	2	2	0	0	0	0	0
............................................................................................................GTTCTTCTTATCAATGCGAATATTCGC.............................................................................................	27	8	0.25	2	2	0	0	0	0	0
......................................................................................................................................................................................GGCAAAACTAAAA-TTGTGCTTGATG....................	25	8	0.25	2	2	0	0	0	0	0
.....TTA-------------------TTTGT-AATT----T----------------------------------------------GGCTTTCTTT----TG............................................................................................................................	25	8	0.25	2	2	0	0	0	0	0
....................................T----T----------------------------------------------GGCTTTCTTT----TGTCAGGTTCTT..................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................TATTTTTGATATTTGGTGCGCTCAAAAG..........................................................	28	8	0.13	1	1	0	0	0	0	0
.............................................................................................................................................................GTGCGCTCAAAAGGGAACTGGT.................................................	22	8	0.13	1	0	0	0	0	1	0
.......................................................................................................................................................TATTTGGTGCGCTCAAAAGGGAACTGG..................................................	27	8	0.13	1	1	0	0	0	0	0
.....TTA-------------------TTTGT-AATT----T----------------------------------------------GGCTTTCTTT----T.............................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................GGCAAAACTAAAA-TTGTGCTTGATGCAG.................	28	8	0.13	1	1	0	0	0	0	0
............................................................................................................GTTCTTCTTATCAATGCGAATAT.................................................................................................	23	8	0.13	1	1	0	0	0	0	0
...............................................................................................................CTTCTTATCAATGCGAATATTCGCG............................................................................................	25	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................TTTATTTTTGATATTTGGTGCGCTC...............................................................	25	8	0.13	1	0	0	0	0	1	0
...............................................................................................................................................................................TGGTGCCGGCAAAACTAAAA-TTGTGC..........................	26	8	0.13	1	0	0	0	0	1	0
...........................................................................................................GGTTCTTCTTATCAATGCGAA....................................................................................................	21	8	0.13	1	1	0	0	0	0	0
................................................................................................................TTCTTATCAATGCGAATATTCGC.............................................................................................	23	8	0.13	1	1	0	0	0	0	0
........................................................................................................................................................................................CAAAACTAAAA-TTGTGCTTGATG....................	23	8	0.13	1	1	0	0	0	0	0
................................................................................................................................................TTTTTGATATTTGGTGCGCTC...............................................................	21	8	0.13	1	1	0	0	0	0	0
.................................AATT----T----------------------------------------------GGCTTTCTTT----TGTCA.........................................................................................................................	20	8	0.13	1	1	0	0	0	0	0
................................................................................................................................................................CGCTCAAAAGGGAACTGGTGCC..............................................	22	8	0.13	1	1	0	0	0	0	0
...............................................................................................................CTTCTTATCAATGCGAATATTCGC.............................................................................................	24	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................TCAAAAGGGAACTGGTGCCGGCAAAAA......................................	27	8	0.13	1	1	0	0	0	0	0
.......................................................................................................................................................................................GCAAAACTAAAA-TTGTGCTTGATG....................	24	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................ATTTTTGATATTTGGTGCGCTT...............................................................	22	8	0.13	1	0	0	0	0	1	0
...........................................................................................................GGTTCTTCTTATCAATGCGAATATT................................................................................................	25	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................GGTGCGCTCAAAAGGGAACTGG..................................................	22	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................................GTGCTTGATGCAGTGCA--AA.........	19	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................................................................................AAAACTAAAA-TTGTGCTTGATGC...................	23	8	0.13	1	0	0	0	0	1	0
................................................................................................................................................TTTTTGATATTTGGTGCGCTCAATT...........................................................	25	8	0.13	1	1	0	0	0	0	0
......................................................................................................................................................................................GGCAAAACTAAAA-TTGTGCTTGATGC...................	26	8	0.13	1	1	0	0	0	0	0
........................................................................................................................................................ATTTGGTGCGCTCAAAAGGGAAC.....................................................	23	8	0.13	1	1	0	0	0	0	0
................................................................................................................................................TTTTTGATATTTGGTGCGCTCAAAA...........................................................	25	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................................................TGGTGCCGGCAAAACTAAAA-TTGTG...........................	25	8	0.13	1	1	0	0	0	0	0
.......A-------------------TTTGT-AATT----T----------------------------------------------GGCTTTCTTT----..............................................................................................................................	21	8	0.13	1	1	0	0	0	0	0
...............................................................................................................CTTCTTATCAATGCGAATATTCGCGA...........................................................................................	26	8	0.13	1	1	0	0	0	0	0

droAna3

TTT----C-G----CATA---T-----------TATT---------------------TTT-----TCGCTTATTTTTATG-------TTTTCATTTT----TAATAGGTGCTTCTTGTAAGTGCGAATTTTCACGCATGCACGTCTTTGATATTTGGTGCAAAGAAGAGGGCGTTAATGCAGAAAAAAATCGGA-GAGTTACTAGTTTAATAGA--AGAAAGCATT-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................AATCGGA-GAGTTACTAGTTTAATAGA--...........	26	1	2.00	2	1	1	0	0	0	0
............................................................................................................................................................................................AATCGGA-GAGTTACTAGTTTAATA...............	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................AAAAATCGGA-GAGTTACTAGTTTAA.................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................GGTGCAAAGAAGAGGGCGTTAATG................................................	24	3	0.67	2	2	0	0	0	0	0
...............................................................................................................................................................................TAATGCAGAAAAAAATCGGA-GAGT............................	24	6	0.50	3	0	2	1	0	0	0
...........................................................................................................................................................TGGTGCAAAGAAGAGGGCGTTA...................................................	22	3	0.33	1	1	0	0	0	0	0
........................................................................................................................................................ATTTGGTGCAAAGAAGAGGG........................................................	20	3	0.33	1	1	0	0	0	0	0
......................................................................................................TAATAGGTGCTTCTTGTAAGTGC.......................................................................................................	23	15	0.33	5	0	1	3	0	0	1
...............................................................................................................................................................GCAAAGAAGAGGGCGTTAATGCAGAAA..........................................	27	3	0.33	1	0	0	0	0	1	0
....................................................................................................................................CACGCATGCACGTCTTTGATATTTGG......................................................................	26	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................ATATTTGGTGCAAAGAAGAGGGCGT.....................................................	25	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................ATATTTGGTGCAAAGAAGAGGGCGTT....................................................	26	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................................................TATTTGGTGCAAAGAAGAGGG........................................................	21	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................TGATATTTGGTGCAAAGAAGAGGGC.......................................................	25	3	0.33	1	0	0	1	0	0	0
............................................................................................................................................................GGTGCAAAGAAGAGGGCGTTAATGC...............................................	25	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................TTTGATATTTGGTGCAAAGAAGAGGGC.......................................................	27	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................TGATATTTGGTGCAAAGAAGAGGG........................................................	24	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................TTGATATTTGGTGCAAAGAAGAGGG........................................................	25	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................TTGATATTTGGTGCAAAGAAGAGGGC.......................................................	26	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................TTGGTGCAAAGAAGAGGGCGTTAATGCA..............................................	28	3	0.33	1	1	0	0	0	0	0
.............................................................................................................................................................GTGCAAAGAAGAGGGCGTTAATGC...............................................	24	3	0.33	1	1	0	0	0	0	0
.........................................................................................................................................................TTTGGTGCAAAGAAGAGGGCGTTA...................................................	24	3	0.33	1	1	0	0	0	0	0
................................................................................................................................TTTTCACGCATGCACGTCTTTGATATT.........................................................................	27	4	0.25	1	0	1	0	0	0	0
.................................................................................................................................TTTCACGCATGCACGTCTTTGATATT.........................................................................	26	4	0.25	1	1	0	0	0	0	0
................................................................................................................................TTTTCACGCATGCACGTCTTTGATA...........................................................................	25	5	0.20	1	1	0	0	0	0	0
......................................................................................................................................CGCATGCACGTCTTTGATATTTGGT.....................................................................	25	6	0.17	1	1	0	0	0	0	0
...............................................................................................................................................................................TAATGCAGAAAAAAATCGGA-GAGC............................	24	6	0.17	1	0	1	0	0	0	0
......................................................................................................TAATAGGTGCTTCTTGTAAGTGCG......................................................................................................	24	12	0.08	1	1	0	0	0	0	0
......................................................................................................TAATAGGTGCTTCTTGTAAGTG........................................................................................................	22	15	0.07	1	0	0	1	0	0	0
......................................................................................................TAATAGGTGCTTCTTGTAAGT.........................................................................................................	21	16	0.06	1	0	1	0	0	0	0

droBip1

TTT----T-G---AAAT----------------ATTT--------------------TTAG-----TTATTCATTTCATTG--------AAATTCACT----TTTTAGAAGATTCCCATAAGTGTGCATTTACACGACTATATATTTTTGATCTTTGGTGTGCAGAAGGTGGCACCAACGCTGAAAGATTAAAAAAAAATTGCTGAATTTATGCA--AGAGCAAATT-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAATTTT-G----CTTA---T-----------TATT--------------------TTTT-----TC---AATTTTTATG-------TTATCGCTTT----CTTTAGGTGCTTCATGTAACTGTGAATTTTCAGGGATGTACATTTTTGATCTTTGGTGCACTTAAAAGGAAGCAAATGCAAAAAAAACTCGTG-ATGTGAATAATTTAGTAAA--AGAAAGTATA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTTTTACTTG-----AAA---T-----------TATT----TTAATTACTTTTTCGTTTTT-----T-------TA---TAATATTT-GTATGAATTC----CCAAAGGAGATTCGTATCATTGTATGTTTTCACGACAATATATTTTGAATTTATGGTGCACCAAAGATGGTAGCAACGCTGCGAAATTACGGG-AAACTATCGAGGATGTACA--AAATAATACT-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATTT--T-G----GATA---T-----------TCTT--------------------TTTT-----TCGCTCATTTGTATG-------TTATCATTTT----CTATAGGCGCTTCTTGTAACTGCGAATTTTCACGTATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCCGATAAAACTCGAA-AAGTGACTACTTTGGTAGA--AGAGAGCATT-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTG----T-G----CATA---T-----------TATT--------------------TTTT-----TCGCTCATTTTTATG-------TTATCATTTT----CTATAGGCGCTTCTTGTAACTGAGAATTTTCACGCATGTACATCCTTGATCTTTGGTGCAGGGAAGAGGGCATGAATGCAGAGAAAACTCGGA-GAGAGACTAGTTTGGTAGA--AGAAAGATTTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAATTTTT-T----CTTA---T-----------TATT--------------------T-TT-----TC---AATTTTTATG-------TTATTGCTTT----CTTTAGGTGCTCCATGTAACTGTGAATTTTCG---ATGTACATTTTTGATCTTTGGTGGACTCAAAAGGGGACAAATGCAGGAAAAACTCGTG-AATTGATTGG-----TA------TAAAAAAA-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACTATTA-A----TTTA---T-----------AAATTGTTATTAAAATTTT---GTTTATTTTTCC-------TT---TTGAATCA-TATTTGATTT----TGGTAGGTGCATCGCAAAAGTGTGTGTTTCCACGTCATTACATTTTTAATTCGTGGTGCACGGAAAATGGAACCAACGCTGAAAAATTAAAGA-AATTGATTTCCGATATGCA--AGCTACCATT-	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATCTTCCATGTTAATTTACCTT-----------TTATTATATTAAACAATAA---GTATATTTATTT-------GT---TTAAATTTATTTTTGTTTA----TGGAAGATGATTCAAAGCTCTGTGTGTTTTCACATCTATATATTTTTGATTTGTGGTGCACAAAGAGGGGTACCCACGAAGAAAATATACAAA-AATTCATCAATATTGTGAA--ATGTAATAT--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................CAAAGCTCTGTGTGTTTTCAC.............................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AGAGGGGTACCCACGAAGAA...........................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TA----TGGAAGATGATTCAAAGCT...........................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ATTTATTTTTGTTTA----TGGAAG........................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TTTGTTTA----TGGAAGATGATTC.................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................TGTGGTGCACAAAGAGGGGTACCCACG................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTT-------GT---TTAAATTTATTTTTGT.....................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GTGGTGCACAAAGAGGGGTAC.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CTATATATTTTTGATTTGTGAA.....................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TTCAAAGCTCTGTGTGTTTTC...............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATTTTTGTTTA----TGGAAGATGA....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TTTGTTTA----TGGAAGATGATTCAAAGC............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................TTGTGGTGCACAAAGAGGC.........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TCAAAGCTCTGTGTGTTTTCA..............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TACCCACGAAGAAAATATACAAA-AAT.............................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGTGGTGCACAAAGAGGGGTA......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ATTTGTGGTGCACAAAGAGG..........................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GATGATTCAAAGCTCTGTGTG....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTCATCAATATTGTGAA--ATGT.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTTGTGGTGCACAAAGAGGGG........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AAAGAGGGGTACCCACGAAGA............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTACCTT-----------TTATTATATTAAA......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TATATTTTTGATTTGTGGTGCACAAC..............................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATATATTTTTGATTTGTGGTGCA..................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AATTTAAA-G-----AA-------------ATTTTTA--------------------TTTT-----TCGCGAATTTTTTTC-------GAATTTGTTT----TCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTTAGCTTTGGTGTACAAAAGAGGGCTCGTATGCAGAAAAAGCTGAGG-CTGTGCTGAATTCAGTAAT--AATTAGCATT-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................CAAAAGAGGGCTCGTATGCAGAAAAAGC......................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGTACAAAAGAGGGCTCGTATGCAGAAAAA........................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................T-----TCGCGAATTTTTTTC-------GA..........................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TGTACAAAAGAGGGCTCGTATGCAG.............................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................TAGCTTTGGTGTACAAAAGAG..........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TGTACAAAAGAGGGCTCGTATGCAGA............................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCGTATGCAGAAAAAGCTGAGG-CTGTGC..........................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGCAGAAAAAGCTGAGG-CTGTGCTGAA......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................TATTTTTTAGCTTTGGTGTACAAAAGA...........................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................TTTTTTC-------GAATTTGTTT----TCATAGGC......................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................TC-------GAATTTGTTT----TCATAGGCGCTT..................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................TTC-------GAATTTGTTT----TCATAGGC......................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................CATAGGCGCTTCTTATAAGTGTGT.....................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTT----T-G----TATA---TTCATTTTAAA-GAT--------------TTTTAGTTTTT-----TCGTGCCGTTTTTTC-------GAATCTTTTT----TCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTCAGCTTTGGTGCACAGAAGAGGGCTCGTATGCAGAAAAGAT-CAGG-CTGTGCTGAATTCTGTGCTAAATTCAGAATT-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAATTTTC-A----ATGC---T-----------CATTTA-ATTAATTATTTT---GTCATTTTTTCT-------GT---GTAAATTT-GACTTGGCTT----AAGACGGCGATTTGTATCAGTGTGTGTTTGAACGCCATCACATTTTTAATTTATGGTGCACAAAAAAGGGTACCTATACAGAAAAAATACAAG-AAATTATCACTGCTGTACG--AGATGAAATTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................CAAG-AAATTATCACTGCTGTACG--AGA........	26	6	2.17	13	0	3	1	0	0	0	0	0	0	0	9
..................................................................................................................................................................................................G-AAATTATCACTGCTGTACG--AGATGA.....	26	6	1.83	11	0	1	0	0	0	0	0	0	0	0	10
..................................................................................................................................................................................................G-AAATTATCACTGCTGTACG--AGA........	23	6	1.33	8	0	8	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTATC............................................................................................................	25	4	1.00	4	0	3	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................G-AAATTATCACTGCTGTACG--AGATG......	25	6	0.83	5	0	5	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTATCA...........................................................................................................	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTATCAG..........................................................................................................	27	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................TTTTCT-------GT---GTAAATTT-GACTTGGCT...................................................................................................................................	25	4	0.75	3	0	2	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCACAAAAAAGGGTACCTATACAGA............................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................TAAATTT-GACTTGGCTT----AAGACGGC......................................................................................................................	25	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTA..............................................................................................................	23	4	0.50	2	0	1	0	0	0	0	1	0	0	0	0
...........................................................TTTTTTCT-------GT---GTAAATTT-GACTTGGC....................................................................................................................................	26	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTG................................................................................................................	21	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGT...............................................................................................................	22	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................TACAAG-AAATTATCACTGCTGTACG--AGA........	28	6	0.33	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................G-AAATTATCACTGCTGTACG--AGAT.......	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................AGTGTGTGTTTGAACGCCATCACATT..................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTATT............................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................TGTTTGAACGCCATCACATTTTT...............................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................TTT-GACTTGGCTT----AAGACGGCGATT..................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................CT-------GT---GTAAATTT-GACTTGGCT...................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TAATTTATGGTGCACAAAAAAGGGTA......................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTAATTTATGGTGCACAAAAAAGGGTA......................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................T-GACTTGGCTT----AAGACGGCGATTTG................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGGCTT----AAGACGGCGATTTGTATCAG..........................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............TGC---T-----------CATTTA-ATTAATTATTTT---GTCAT........................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................TT----AAGACGGCGATTTGTA..............................................................................................................	18	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGGCTT----AAGACGGCGATTTGTAT.............................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................TGTTTGAACGCCATCACATTTTTAATT...........................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TTTTTTCT-------GT---GTAAATTT-GACTTGGCT...................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTATCAGTG........................................................................................................	29	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................T----AAGACGGCGATTTGTATCAGTGTG......................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCTT----AAGACGGCGATTTGTAT.............................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................TTTTTTCT-------GT---GTAAATTT-GACTTGGCC...................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TCAGTGTGTGTTTGAACGCCATCACATT..................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................TTCT-------GT---GTAAATTT-GACTTGGCT...................................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................ATTTGTATCAGTGTGTGTTTGAACGCC..........................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TATCACTGCTGTACG--AGATG......	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TATACAGAAAAAATACAAG-AAATTA..........................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................ATTTGTATCAGTGTGTGTTTGAACGC...........................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................GACGGCGATTTGTATCAGTGTGTGTTT.................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................ATTTGTATCAGTGTGTGTTTGAACGCCA.........................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
..............................................TATTTT---GTCATTTTTTCT-------GT---GTAAATT..............................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TACAAG-AAATTATCACTGCTGTACG--A..........	26	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................CAAG-AAATTATCACTGCTGTACG--A..........	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0

dpe_263

scaffold_12128:238-317 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.0	-27.8	-27.7