ID:

dpe_262

 Coordinate:

scaffold_228:26953-27032 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.8 -27.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Transib5DNACMC-Transib+
mature
  1. scaffold_66:320245-320268 +
  2. scaffold_53:52832-52855 -
  3. dpe_263  scaffold_12128:238-261 +
  4. dpe_264  scaffold_228:14731-14754 +
  5. dpe_262  scaffold_228:26953-26976 +
star
  1. scaffold_420:486-511 +
  2. dpe_263  scaffold_12128:291-316 +
  3. dpe_264  scaffold_228:14784-14809 +
  4. dpe_262  scaffold_228:27006-27031 +

Sense Strand Reads

AACTTTTTAAATATTATTGTTTATAATTTTGTCTTCTTTTGACATTTTACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCTTGAACTTAACATA
***********************************.(((((((((((..((.(((.(((((..((((((((.......(((((((......)))))))......))))))))..))))).))).)).....)))))))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V050
head
..................................................TATTCATTGTAAAGGAGATTGTCA.......................................................................................................... 24 0 5 5.80 29 29 0 0 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGC................................................... 26 0 4 3.75 15 14 0 1 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCA.................................................. 27 0 4 2.00 8 8 0 0 0 0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGG..................................................... 25 0 4 1.50 6 6 0 0 0 0
..................................................TATTCATTGTAAAGGAGATTGTCATAAC...................................................................................................... 28 0 4 1.25 5 3 2 0 0 0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGGC................................................... 27 0 4 1.00 4 3 0 0 1 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGG.................................................... 25 0 4 0.75 3 3 0 0 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGG..................................................... 24 0 4 0.75 3 3 0 0 0 0
..................................................TATTCATTGTAAAGGAGATTGTCATA........................................................................................................ 26 0 5 0.60 3 3 0 0 0 0
..................................................TATTCATTGTAAAGGAGATTGTCATAA....................................................................................................... 27 0 4 0.50 2 2 0 0 0 0
...................................................ATTCATTGTAAAGGAGATTGTCA.......................................................................................................... 23 0 5 0.40 2 2 0 0 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGAGC................................................... 26 1 4 0.25 1 1 0 0 0 0
.......................................................................................................TTGATCTTTGGGGCAAAGAAAAGGGC................................................... 26 1 4 0.25 1 1 0 0 0 0
......................................................................................................TTTGATCTGTGGTGCAAAGAAAAGGG.................................................... 26 1 4 0.25 1 1 0 0 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGA.......................................................... 19 0 4 0.25 1 1 0 0 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCAC................................................. 28 0 4 0.25 1 1 0 0 0 0
......................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGG.................................................... 26 0 4 0.25 1 1 0 0 0 0
....................................................................TTGTCATAACTGTGTGTTTTC........................................................................................... 21 0 4 0.25 1 1 0 0 0 0
........................................................................................................TGATCTTTGGTGCAAAGAAAAGGGC................................................... 25 0 4 0.25 1 1 0 0 0 0
.......................................................................................................TTGATCTTTGGTGCAAAGAAAAGGT.................................................... 25 1 4 0.25 1 1 0 0 0 0
.......................................................................................................TTGATCTTCGGTGCAAAGAAAAGGGC................................................... 26 1 4 0.25 1 1 0 0 0 0
.......................................................................................................TTGATCTTGGGTGCAAAGAAAAGGGC................................................... 26 1 4 0.25 1 1 0 0 0 0
..................................................................................TGTTTTCACGCATGCACATCTTTG.......................................................................... 24 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................ATGTCGAAAAAATGCAAGGC........................... 20 0 5 0.20 1 1 0 0 0 0
.................................................ATATTCATTGTAAAGGAGATTGTCA.......................................................................................................... 25 1 5 0.20 1 1 0 0 0 0
...................................................ATTCATTGTAAAGGAGATTGTCATA........................................................................................................ 25 0 5 0.20 1 1 0 0 0 0
..................................................TATTCATTGTAAAGGAGATTGT............................................................................................................ 22 0 5 0.20 1 1 0 0 0 0
..................................................TATTCATTTTAAAGGAGATTGCCA.......................................................................................................... 24 2 5 0.20 1 1 0 0 0 0
......................................................................................................................................TGTCGAAAAAATGCAAGGC........................... 19 0 5 0.20 1 1 0 0 0 0
.................................................CTATTCATTGTAAAGGAGATTGT............................................................................................................ 23 0 5 0.20 1 1 0 0 0 0
...................................................................................GTTTTCACGCATGCACATCTT............................................................................ 21 0 5 0.20 1 1 0 0 0 0
..................................................TATTCATTGTAAAGGAGATTGTC........................................................................................................... 23 0 5 0.20 1 1 0 0 0 0
..................................................TATTCATTGTAAAGGAGATTGTCAT......................................................................................................... 25 0 5 0.20 1 1 0 0 0 0
......................................................................................................................................TGTCGAAAAAATGCAAGGCATAAATA.................... 26 0 5 0.20 1 1 0 0 0 0
............................................TTTTACTATTCATTGTAAAGGAGATTG............................................................................................................. 27 0 5 0.20 1 1 0 0 0 0
......................................................................................................................AAGAAAAGGGCACGAATGTCG......................................... 21 0 6 0.17 1 1 0 0 0 0
..........................................................................AGCCTGTGTGTTTTCACGCAT..................................................................................... 21 3 6 0.17 1 0 0 0 0 1

Anti-sense strand reads

TTGAAAAATTTATAATAACAAATATTAAAACAGAAGAAAACTGTAAAATGATAAGTAACATTTCCTCTAACAGTATTGACACACAAAAGTGCGTACGTGTAGAAACTAGAAACCACGTTTCTTTTCCCGTGCTTACAGCTTTTTTACGTTCCGTATTTATTAAACGAACTTGAATTGTAT
************************************.(((((((((((..((.(((.(((((..((((((((.......(((((((......)))))))......))))))))..))))).))).)).....)))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
.........................................................................................TGCGTACGTGTAGAAACTAGAAA.................................................................... 23 0 5 0.60 3 3
........................................................................................GTGCGTACGTGTAGAAACTAGAAA.................................................................... 24 0 5 0.40 2 2
.............................................................TTCCTCTAACAGTATTGACAC.................................................................................................. 21 0 4 0.25 1 1
............................................................TTTCCTCTAACAGTATTGACACAC................................................................................................ 24 0 4 0.25 1 1
...............................................................CCTCTAACAGTATTGACACA................................................................................................. 20 0 4 0.25 1 1
..............................CAGAAGAAAACTGTAAAATGATAAGT............................................................................................................................ 26 0 5 0.20 1 1
.................................................GATAAGTAACATTTCCTCTAACAGTAT........................................................................................................ 27 0 5 0.20 1 1
........................................................................................GTGCGTACGTGTAGAAGCTAGAAAC................................................................... 25 1 5 0.20 1 1
................................................TGATAAGTAACATTTCCTCTAACAGTAG........................................................................................................ 28 1 5 0.20 1 1
.........................................................................................TGCGTACGTGTAGAAACTAGAAAC................................................................... 24 0 5 0.20 1 1
..........................................................................................GCGTACGTGTAGAAACTAGAAAC................................................................... 23 0 5 0.20 1 1
.......................................ACTGTAAAATGATAAGTAAC......................................................................................................................... 20 0 7 0.14 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_228:26903-27082 + dpe_262 AACTT--TTT--AA--A-TATTA--TTG-----TTTATAATTT------TG-TCT-----------T--CTTTTGACATTT------TACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCTTGAAC---TTAACATA-
dp5 Unknown_group_30:18384-18561 + AACTT--T----AA--A-TATTA--TTG-----TTTATAATTT------TG-TCT-----------T--CTTTTGACATTT------TACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCCAAGAAAAGGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGTTGCAAC---TTAACATA-
droWil2 scf2_1100000004620:99324-99488 + AATTT--ACTG------T-----------------AATAATTA------TG-TTT-----------G--CTTTGCACATT-T---------TTTGATTGTATAGGAGCATCTTATAACTGTGTGTTTTCACGCATCCACATTTTTGATCTTTGGTGCAAAGAAAAAGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGCTGGCAC---TAAACATA-
droMoj3 scaffold_2166:2930-3079 + TTTTT--TTA------TT-----------------TGTAATT--------------------------------------------TGGC-TTTCTTTTGTCAGGTTCTTCTTATCAATGCGAATATTCGCGAATGTTTATTTTTGATATTTGGTGCGCTCAAAAGGGAACTGGTGCCGGCAAAACTAAAATTGTGCTTGATGCAGTGCAAA---AACACATT-
droAna3 scaffold_13337:21507993-21508156 + TTTC--------GC--------------------ATATTA------TTTTTT-CG-----CTTAT---T------------TTTATGTTT-TCATTTTTAATAGGTGCTTCTTGTAAGTGCGAATTTTCACGCATGCACGTCTTTGATATTTGGTGCAAAGAAGAGGGCGTTAATGCAGAAAAAAATCGGAGAGTTACTAGTTTAATAGAAG---AAAGCATT-
droBip1 scf7180000396475:6797-6955 - ATTT--------GTAAATTAT-----TA-----TTTAAA-------------------------T---T------------T-T-GATTT-TGGATTTTGATAGGTGCATCGCAAAAATGTGTTTTTCCACGTCTGCATATTTTTAATATGTGGTGCACAGGTAATGGAACCAATGCCGAAAAAATGAGGAAATTGATTTCCGATGTGCAAG---CGGATATT-
droKik1 scf7180000298439:8228-8394 - AGTTT--ACCG------A-AA-ATTTTG-----CTTATTTTTT------TT-TCA--------AT---T------------TTTATATTA-TTGCTTTCCTTAGGTGCTTCATGTAACTGTGAGTTTTCACGGATGTACATTTTAGATCTTTGGTGCACTCAAAAGGGGACAAATGCAGAAAAAACAAGTGATGTGATTGGTATAGTAAAAG---A--------
droFic1 scf7180000453162:9049-9236 - AACTATTAATTTGTAAATAAC-----CATTTAA-ATTTT-----ATTTATCT-TT-----TTCTT---T-----TGAATC------ATAT-TTGATTTTGGTAGGCGCATCGCAAAAGTGTGTGTTTTCACGGCTTTATATTTTTAATATGTGGTCCACTGAAAATGGAACCAACACACAAAAATTAAAGAAATTGATATCCGATGTGCAAG---CCAGCATT-
droEle1 scf7180000490366:7254-7420 + AATTT--T----GG--------------------ATATT-----CTTTTTTT-CG-----CTCAT---T------------TGTATGTTA-TCATTTTCTATAGGCGCTTCTTGTAACTGCGAATTTTCACGTATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCCGATAAAACTCGAAAAGTGACTACTTTGGTAGAAG---AGAGCATT-
droRho1 scf7180000771617:11758-11923 + TTGT--------GC--------------------ATATT-----ATTTTTTT-CG-----CTCAT---T------------TTTATGTTA-TCATTTTCTATAGGCGCTTCTTGTAACTGAGAATTTTCACGCATGTACATCCTTGATCTTTGGTGCAGGGAAGAGGGCATGAATGCAGAGAAAACTCGGAGAGAGACTAGTTTGGTAGAAG---AAAGATTTA
droBia1 scf7180000302283:67337-67518 - CTTTT--TAT------C-AATCG--GTT-----CTAATAATTT------TG-TCG-----CTTTT---A--TTTAAAA---TGTT-TGTT-TTCATTTTCAAAGGCGATTCGTATTATTGTGTATTTTCACGATTGTATATTTTAAATTTATGGTGCACCAAAGATGGTAGGAACGCAATGAAATTACAAGAAGCGATCGAAGCTGTTAAAT---GTAGCATT-
droTak1 scf7180000412610:12770-12950 - AAATT--ATTTTATG-T-ATTGT---AT-TTGG-ATTTT-----CCTTTCTT-CG-----CTCAT---T------------TGTTTGTTA-TAATTTTCTATAGGCGCT---TGTAACTGCTAATTTTCACGCATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCAGATAAAACTCGAAGAGTGACAACTTTGGTAGAAG---AAAGCATT-
droEug1 scf7180000408916:11975-12163 - GTCTT--TCT------T-GTTTG--TTC-----TTATTAGCTT------TG-ATATTTAAT---TTTT-AATGCGTTATTT-----CTTT-ATTAATTTGGTAGGTGACTCTTTTCAATGTGTCTTCCCTCGGTTGTACATATTCAATTATTGGTGTATAACAATCGGCACCAACGAAAAAAAATAT-GGATGGTTATCCATCATGTAAATAGCAGCAATATT-
dm3 chr3R:400701-400877 + ATTTT-------GTA-T-ATTCA--TTT-----TAAAGATTTTTATCTTTTT-CG-----TGCATT--T------------TTTTTCGAA-TTTGTTTTCATAATCCCTTCTTATAAGTGTGTGTTTTCACGC------ATTTTTGAGTTCTGGTGCATAGAACAGCGCTCGTATGCAGAAAAAGGTCAGGCTGTGCTGAATTCAGTAATAA---TTAGCATT-
droSim2 2r:851102-851270 + AATTT--AAAG------A-AA---------------TTT-----TTATTTTT-CG-----CGAAT---T------------TTTTTCGAA-TTTGTTTTCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTTAGCTTTGGTGTACAAAAGAGGGCTCGTATGCAGAAAAAGCTGAGGCTGTGCTGAATTCAGTAATAA---TTAGCATT-
droSec2 scaffold_112:57692-57873 + TTTT--------GTA-T-ATTCA---TT-T---TAAAGATTTTTAGTTTTTT-CG-----TGCCG---T------------TTTTTCGAA-TCTTTTTTCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTCAGCTTTGGTGCACAGAAGAGGGCTCGTATGCAGAAAAGAT-CAGGCTGTGCTGAATTCTGTGCTAA-ATTCAGAATT-
droYak3 v2_chrUn_2706:4103-4289 + AAATT--TTC---AA-T-GCTCATTTAA-----TTAATTATTT------TG-TCA-----T---TTTTTCTGTGTAAATT------TGAC-TTGGCTTAAGACGGCGATTTGTATCAGTGTGTGTTTGAACGCCATCACATTTTTAATTTATGGTGCACAAAAAAGGGTACCTATACAGAAAAAATACAAGAAATTATCACTGCTGTACGAG---ATGAAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AACTT--TTT--AA--A-TATTA--TTG-----TTTATAATTT------TG-TCT-----------T--CTTTTGACATTT------TACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCAAAGAAAAGGGCACGAATGTCGAAAAAATGCAAGGCATAAATAATTTGCTTGAAC---TTAACATA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................TATTCATTGTAAAGGAGATTGTCA..............................................................................................................2455.80290290000
...............................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGC.......................................................2643.75150141000
...............................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCA......................................................2742.008080000
..............................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGG.........................................................2541.506060000
..........................................................................................TATTCATTGTAAAGGAGATTGTCATAAC..........................................................................................................2841.255230000
..............................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGGC.......................................................2741.004030001
...............................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGG........................................................2540.753030000
...............................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGG.........................................................2440.753030000
..........................................................................................TATTCATTGTAAAGGAGATTGTCATA............................................................................................................2650.603030000
..........................................................................................TATTCATTGTAAAGGAGATTGTCATAA...........................................................................................................2740.502020000
...........................................................................................ATTCATTGTAAAGGAGATTGTCA..............................................................................................................2350.402020000
...............................................................................................................................................TTGATCTTTGGTGCAAAGA..............................................................1940.251010000
...............................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGGCAC.....................................................2840.251010000
..............................................................................................................................................TTTGATCTTTGGTGCAAAGAAAAGGG........................................................2640.251010000
............................................................................................................TTGTCATAACTGTGTGTTTTC...............................................................................................2140.251010000
................................................................................................................................................TGATCTTTGGTGCAAAGAAAAGGGC.......................................................2540.251010000
...............................................................................................................................................TTGATCTTTGGTGCAAAGAAAAGGT........................................................2540.251010000
..........................................................................................................................TGTTTTCACGCATGCACATCTTTG..............................................................................2450.201010000
.............................................................................................................................................................................ATGTCGAAAAAATGCAAGGC...............................2050.201010000
...........................................................................................ATTCATTGTAAAGGAGATTGTCATA............................................................................................................2550.201010000
..........................................................................................TATTCATTGTAAAGGAGATTGT................................................................................................................2250.201010000
..............................................................................................................................................................................TGTCGAAAAAATGCAAGGC...............................1950.201010000
.........................................................................................CTATTCATTGTAAAGGAGATTGT................................................................................................................2350.201010000
...........................................................................................................................GTTTTCACGCATGCACATCTT................................................................................2150.201010000
..........................................................................................TATTCATTGTAAAGGAGATTGTC...............................................................................................................2350.201010000
..........................................................................................TATTCATTGTAAAGGAGATTGTCAT.............................................................................................................2550.201010000
..............................................................................................................................................................................TGTCGAAAAAATGCAAGGCATAAATA........................2650.201010000
..............................................................................TTT------TACTATTCATTGTAAAGGAGATTG.................................................................................................................2750.201010000
..............................................................................................................................................................AAGAAAAGGGCACGAATGTCG.............................................2160.171010000
dp5
AACTT--T----AA--A-TATTA--TTG-----TTTATAATTT------TG-TCT-----------T--CTTTTGACATTT------TACTATTCATTGTAAAGGAGATTGTCATAACTGTGTGTTTTCACGCATGCACATCTTTGATCTTTGGTGCCAAGAAAAGGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGTTGCAAC---TTAACATA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGG........................................................26155.0055034000012000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGC.......................................................27133.0033011000002200
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGG.........................................................25228.0056039001001600
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAG..........................................................2429.501901600100200
...............................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGG........................................................2517.0070700000000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAA...........................................................2326.50130600000700
...............................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGGC.......................................................2614.0040100000300
.........................................................................................CTATTCATTGTAAAGGAGATTGTCA..............................................................................................................2523.5070700000000
................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGGGC.......................................................2513.0030300000000
................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGGG........................................................2413.0030300000000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGCA......................................................2813.0030100000200
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAA............................................................2222.0040400000000
.....................................................................................................AAGGAGATTGTCATAACTGTG......................................................................................................2112.0020000000200
...............................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGGGCA......................................................2712.0020200000000
.........................................................................................CTATTCATTGTAAAGGAGATTGTC...............................................................................................................2422.0040400000000
...................................................................................................TAAAGGAGATTGTCATAACTGTGTGTTT.................................................................................................2812.0020000000200
...................................................................................................TAAAGGAGATTGTCATAACTGTGTGT...................................................................................................2611.0010000000100
............................................................................................TTCATTGTAAAGGAGATTGTCATAA...........................................................................................................2511.0010100000000
...................................................................................................TAAAGGAGATTGTCATAACTGTG......................................................................................................2311.0010100000000
.................................................................................................................................................GATCTTTGGTGCCAAGAAAAGGG........................................................2311.0010100000000
............................................................................CATTT------TACTATTCATTGTAAAGGA......................................................................................................................2421.0020000000200
..............................................................................................................................................................................TGCCGAAAAAATGCAAGGCATAAATA........................2611.0010000000100
...............................................................................................................................................TTGATCTTTGGTGCCAAGAAAAGG.........................................................2421.0020200000000
...............................................................................................................TCATAACTGTGTGTTTTCACGCAT.........................................................................................2411.0010100000000
.....................................................................................................................................................................GGGCACGAATGCCGAAAAAATG.....................................2211.0010100000000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAA..........................................................2421.0020200000000
..........................................................................................................GATTGTCATAACTGTGTGTTTTCACGCA..........................................................................................2811.0010100000000
...........................................................................................ATTCATTGTAAAGGAGATTGTC...............................................................................................................2221.0020200000000
........................................................................................................................TGTGTTTTCACGCATGCACATCTT................................................................................2421.0020200000000
.....................................................................................................................................................TTTGGTGCCAAGAAAAGGGC.......................................................2011.0010100000000
................................................................................................................................................................GAAAAGGGCACGAATGCCGAAAAAA.......................................2511.0010100000000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGGA.......................................................2711.0010100000000
..............................................................................................................................................................................TGCCGAAAAAATGCAAGGCATAAA..........................2411.0010100000000
..................................................................................................................TAACTGTGTGTTTTCACGCATGCACA....................................................................................2611.0010100000000
.......................................................................................TACTATTCATTGTAAAGGAGATTG.................................................................................................................2421.0020200000000
..........................................................................................................GATTGTCATAACTGTGTGTTTTCAC.............................................................................................2511.0010100000000
.........................................................................................................................................ACATCTTTGATCTTTGGTGCC..................................................................2120.5010100000000
.........................................................................................CTATTCATTGTAAAGGAGATTGTCT..............................................................................................................2520.5010100000000
............................................................................................................................................TCTTTGATCTTTGGTGCCA.................................................................1920.5010100000000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGA..............................................................2020.5010100000000
....................TTA--TTG-----TTTATAATTT------TG-TCT-----------T--CTTT.......................................................................................................................................................2620.5010000000100
...............................................................................................................................................TTGATCTTTGGTGCCAAGAAA............................................................2120.5010100000000
............................................................................................................................................TCTTTGATCTTTGGTGCCAAGAAAA...........................................................2520.5010100000000
.............................................................................................TCATTGTAAAGGAGATTGTCA..............................................................................................................2120.5010100000000
...............................................................................................................................................TTGATCTTTGGTGCCAAGAAAA...........................................................2220.5010100000000
..............................................................................................................................TTCACGCATGCACATCTTTGATCT..........................................................................2420.5010010000000
.................................................................................................................................ACGCATGCACATCTTTGATCTTTGG......................................................................2520.5010100000000
.......T----AA--A-TATTA--TTG-----TTTATAATT......................................................................................................................................................................................2120.5010100000000
.........................................................................................................................................ACATCTTTGATCTTTGGTGCCAAGA..............................................................2520.5010100000000
........................................................................................................................................CACATCTTTGATCTTTGGT.....................................................................1920.5010100000000
.............................................................................................................................................CTTTGATCTTTGGTGCCAAG...............................................................2020.5010100000000
.............................................................................................................................................CTTTGATCTTTGGTGCCAAGAAAA...........................................................2420.5010100000000
................................................................................................................................................TGATCTTTGGTGCCAAGAAAAGG.........................................................2320.5010000100000
.........................................................................................CTATTCATTGTAAAGGAGATTGTCAA.............................................................................................................2620.5010100000000
..............................................................................................................................................TTTGATCTTTGGTGCCAAGAAAAGGA........................................................2620.5010100000000
..........................................................................................TATTCATTGTAAAGGAGATTGTCA..............................................................................................................2420.5010100000000
...........................................................................................ATTCATTGTAAAGGAGATTGTCAA.............................................................................................................2420.5010100000000
......................................................................................................................................TGCACATCTTTGATCTTTGG......................................................................2020.5010100000000
.............................................................................................................................................CTTTGATCTTTGGTGCCAAGAA.............................................................2220.5010100000000
..........................................................................................TATTCATTGTAAAGGAGATTGTC...............................................................................................................2320.5010100000000
...........................................................................................................................................ATCTTTGATCTTTGGTGCC..................................................................1920.5010000000100
...............................................................................................................................TCACGCATGCACATCTTTGATCTTTGG......................................................................2720.5010100000000
............................................................................................................................................TCTTTGATCTTTGGTGCCAAGAAAAG..........................................................2620.5010100000000
droWil2
AATTT--ACTG------T-----------------AATAATTA------TG-TTT-----------G--CTTTGCACATT-T---------TTTGATTGTATAGGAGCATCTTATAACTGTGTGTTTTCACGCATCCACATTTTTGATCTTTGGTGCAAAGAAAAAGGCACGAATGCCGAAAAAATGCAAGGCATAAATAATTTGCTGGCAC---TAAACATA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................GCATCTTATAACTGTGTGTTTTCACGCA..........................................................................................2850.60303000
....................................................................................................................................................CTTTGGTGCAAAGAAAAAGGCACGA...................................................2540.50202000
.............................................................................................TGATTGTATAGGAGCATCTTATAACTG........................................................................................................2750.40202000
....................................................................................................................................................CTTTGGTGCAAAGAAAAAGGC.......................................................2140.25101000
.............................................................................................................................................TTTTGATCTTTGGTGCAAAGAAAAAGG........................................................2740.25101000
................................................................................................................................................TGATCTTTGGTGCAAAGAAAAAGGC.......................................................2540.25100010
....................................................................................................................................................CTTTGGTGCAAAGAAAAAGG........................................................2040.25101000
...........................................................................................................CATCTTATAACTGTGTGTTTTCACGC...........................................................................................2650.20101000
...........................................................................................................CATCTTATAACTGTGTGTTTTCA..............................................................................................2350.20101000
......................................................................................................................................TCCACATTTTTGATCTTTGGTGCAAAG...............................................................2750.20101000
...........................................................................................................CATCTTATAACTGTGTGTTTTCACGCATC........................................................................................2950.20101000
.............................................................................................TGATTGTATAGGAGCATCTTATAAC..........................................................................................................2550.20101000
......................................................................................................................................TCCACATTTTTGATCTTTGGTGCAAA................................................................2650.20101000
.........................................................................................................................................ACATTTTTGATCTTTGGTGCAAAG...............................................................2450.20101000
..........................................................................................................................................................................................GCAAGGCATAAATAATTTGCTGGCA.............2550.20101000
...............................................................................................................................TCACGCATCCACATTTTTGATCTTTGG......................................................................2760.17100010
.............................................................................................................TCTTATAACTGTGTGTTTTCACGCA..........................................................................................2560.17101000
..................................................................................................................................CGCATCCACATTTTTGATCTTTGG......................................................................2460.17101000
droMoj3
TTTTT--TTA------TT-----------------TGTAATT--------------------------------------------TGGC-TTTCTTTTGTCAGGTTCTTCTTATCAATGCGAATATTCGCGAATGTTTATTTTTGATATTTGGTGCGCTCAAAAGGGAACTGGTGCCGGCAAAACTAAAATTGTGCTTGATGCAGTGCAAA---AACACATT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................GGTTCTTCTTATCAATGCGAATAT.................................................................................................2481.008700010
.......................................................................................................GGTTCTTCTTATCAATGCGAATATTC...............................................................................................2680.887500020
.......................................................................................................GGTTCTTCTTATCAATGCGAATATTCGC.............................................................................................2880.756600000
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTCA..............................................................2380.635500000
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAAG..........................................................2780.504400000
.......................................................................................................GGTTCTTCTTATCAATGCGAATA..................................................................................................2380.504300010
.......................................................................................................GGTTCTTCTTATCAATGCGAATATTCG..............................................................................................2780.504400000
......................................................................................................................................TGTTTATTTTTGATATTTGGTGCGC.................................................................2580.383120000
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAA...........................................................2680.383300000
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTC...............................................................2280.383200010
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTCAA.............................................................2480.383300000
.......................................................................................................GGTTCTTCTTATCAATGCGAATATTCGCG............................................................................................2980.383300000
...........................................................................................................................................ATTTTTGATATTTGGTGCGC.................................................................2080.252200000
.....................................................................................................................................................................................AAAACTAAAATTGTGCTTGATGCAG..................2580.252200000
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTCAAAAGG.........................................................2880.252200000
........................................................................................................GTTCTTCTTATCAATGCGAATATTCGC.............................................................................................2780.252200000
..................................................................................................................................................................................GGCAAAACTAAAATTGTGCTTGATG.....................2580.252200000
.......TTA------TT-----------------TGTAATT--------------------------------------------TGGC-TTTCTTTTG............................................................................................................................2580.252200000
.........................................T--------------------------------------------TGGC-TTTCTTTTGTCAGGTTCTT..................................................................................................................2480.131100000
..........................................................................................................................................TATTTTTGATATTTGGTGCGCTCAAAAG..........................................................2880.131100000
.........................................................................................................................................................GTGCGCTCAAAAGGGAACTGGT.................................................2280.131000010
...................................................................................................................................................TATTTGGTGCGCTCAAAAGGGAACTGG..................................................2780.131100000
.......TTA------TT-----------------TGTAATT--------------------------------------------TGGC-TTTCTTTT.............................................................................................................................2480.131100000
..................................................................................................................................................................................GGCAAAACTAAAATTGTGCTTGATGCAG..................2880.131100000
........................................................................................................GTTCTTCTTATCAATGCGAATAT.................................................................................................2380.131100000
...........................................................................................................CTTCTTATCAATGCGAATATTCGCG............................................................................................2580.131100000
........................................................................................................................................TTTATTTTTGATATTTGGTGCGCTC...............................................................2580.131000010
...........................................................................................................................................................................TGGTGCCGGCAAAACTAAAATTGTGC...........................2680.131000010
.......................................................................................................GGTTCTTCTTATCAATGCGAA....................................................................................................2180.131100000
............................................................................................................TTCTTATCAATGCGAATATTCGC.............................................................................................2380.131100000
....................................................................................................................................................................................CAAAACTAAAATTGTGCTTGATG.....................2380.131100000
............................................................................................................................................TTTTTGATATTTGGTGCGCTC...............................................................2180.131100000
......................................AATT--------------------------------------------TGGC-TTTCTTTTGTCA.........................................................................................................................2080.131100000
............................................................................................................................................................CGCTCAAAAGGGAACTGGTGCC..............................................2280.131100000
...........................................................................................................CTTCTTATCAATGCGAATATTCGC.............................................................................................2480.131100000
...............................................................................................................................................................TCAAAAGGGAACTGGTGCCGGCAAAAA......................................2780.131100000
...................................................................................................................................................................................GCAAAACTAAAATTGTGCTTGATG.....................2480.131100000
...........................................................................................................................................ATTTTTGATATTTGGTGCGCTT...............................................................2280.131000010
.......................................................................................................GGTTCTTCTTATCAATGCGAATATT................................................................................................2580.131100000
........................................................................................................................................................GGTGCGCTCAAAAGGGAACTGG..................................................2280.131100000
.................................................................................................................................................................................................GTGCTTGATGCAGTGCAAA---.........1980.131100000
.....................................................................................................................................................................................AAAACTAAAATTGTGCTTGATGC....................2380.131000010
............................................................................................................................................TTTTTGATATTTGGTGCGCTCAATT...........................................................2580.131100000
..................................................................................................................................................................................GGCAAAACTAAAATTGTGCTTGATGC....................2680.131100000
....................................................................................................................................................ATTTGGTGCGCTCAAAAGGGAAC.....................................................2380.131100000
............................................................................................................................................TTTTTGATATTTGGTGCGCTCAAAA...........................................................2580.131100000
...........................................................................................................................................................................TGGTGCCGGCAAAACTAAAATTGTG............................2580.131100000
.........A------TT-----------------TGTAATT--------------------------------------------TGGC-TTTCTTT..............................................................................................................................2180.131100000
...........................................................................................................CTTCTTATCAATGCGAATATTCGCGA...........................................................................................2680.131100000
droAna3
TTTC--------GC--------------------ATATTA------TTTTTT-CG-----CTTAT---T------------TTTATGTTT-TCATTTTTAATAGGTGCTTCTTGTAAGTGCGAATTTTCACGCATGCACGTCTTTGATATTTGGTGCAAAGAAGAGGGCGTTAATGCAGAAAAAAATCGGAGAGTTACTAGTTTAATAGAAG---AAAGCATT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................AATCGGAGAGTTACTAGTTTAATAGA..............2612.002110000
........................................................................................................................................................................................AATCGGAGAGTTACTAGTTTAATA................2411.001100000
.....................................................................................................................................................................................AAAAATCGGAGAGTTACTAGTTTAA..................2511.001100000
........................................................................................................................................................GGTGCAAAGAAGAGGGCGTTAATG................................................2430.672200000
...........................................................................................................................................................................TAATGCAGAAAAAAATCGGAGAGT.............................2460.503021000
.......................................................................................................................................................TGGTGCAAAGAAGAGGGCGTTA...................................................2230.331100000
....................................................................................................................................................ATTTGGTGCAAAGAAGAGGG........................................................2030.331100000
..................................................................................................TAATAGGTGCTTCTTGTAAGTGC.......................................................................................................23150.335013001
...........................................................................................................................................................GCAAAGAAGAGGGCGTTAATGCAGAAA..........................................2730.331000010
................................................................................................................................CACGCATGCACGTCTTTGATATTTGG......................................................................2630.331100000
..................................................................................................................................................ATATTTGGTGCAAAGAAGAGGGCGT.....................................................2530.331100000
..................................................................................................................................................ATATTTGGTGCAAAGAAGAGGGCGTT....................................................2630.331010000
...................................................................................................................................................TATTTGGTGCAAAGAAGAGGG........................................................2130.331100000
................................................................................................................................................TGATATTTGGTGCAAAGAAGAGGGC.......................................................2530.331001000
........................................................................................................................................................GGTGCAAAGAAGAGGGCGTTAATGC...............................................2530.331010000
..............................................................................................................................................TTTGATATTTGGTGCAAAGAAGAGGGC.......................................................2730.331100000
................................................................................................................................................TGATATTTGGTGCAAAGAAGAGGG........................................................2430.331100000
...............................................................................................................................................TTGATATTTGGTGCAAAGAAGAGGG........................................................2530.331010000
...............................................................................................................................................TTGATATTTGGTGCAAAGAAGAGGGC.......................................................2630.331010000
......................................................................................................................................................TTGGTGCAAAGAAGAGGGCGTTAATGCA..............................................2830.331100000
.........................................................................................................................................................GTGCAAAGAAGAGGGCGTTAATGC...............................................2430.331100000
.....................................................................................................................................................TTTGGTGCAAAGAAGAGGGCGTTA...................................................2430.331100000
............................................................................................................................TTTTCACGCATGCACGTCTTTGATATT.........................................................................2740.251010000
.............................................................................................................................TTTCACGCATGCACGTCTTTGATATT.........................................................................2640.251100000
............................................................................................................................TTTTCACGCATGCACGTCTTTGATA...........................................................................2550.201100000
..................................................................................................................................CGCATGCACGTCTTTGATATTTGGT.....................................................................2560.171100000
...........................................................................................................................................................................TAATGCAGAAAAAAATCGGAGAGC.............................2460.171010000
..................................................................................................TAATAGGTGCTTCTTGTAAGTGCG......................................................................................................24120.081100000
..................................................................................................TAATAGGTGCTTCTTGTAAGTG........................................................................................................22150.071001000
..................................................................................................TAATAGGTGCTTCTTGTAAGT.........................................................................................................21160.061010000
droBip1
ATTT--------GTAAATTAT-----TA-----TTTAAA-------------------------T---T------------T-T-GATTT-TGGATTTTGATAGGTGCATCGCAAAAATGTGTTTTTCCACGTCTGCATATTTTTAATATGTGGTGCACAGGTAATGGAACCAATGCCGAAAAAATGAGGAAATTGATTTCCGATGTGCAAG---CGGATATT-SizeHit CountTotal NormTotal
No Reads
droKik1
AGTTT--ACCG------A-AA-ATTTTG-----CTTATTTTTT------TT-TCA--------AT---T------------TTTATATTA-TTGCTTTCCTTAGGTGCTTCATGTAACTGTGAGTTTTCACGGATGTACATTTTAGATCTTTGGTGCACTCAAAAGGGGACAAATGCAGAAAAAACAAGTGATGTGATTGGTATAGTAAAAG---A--------SizeHit CountTotal NormTotal
No Reads
droFic1
AACTATTAATTTGTAAATAAC-----CATTTAA-ATTTT-----ATTTATCT-TT-----TTCTT---T-----TGAATC------ATAT-TTGATTTTGGTAGGCGCATCGCAAAAGTGTGTGTTTTCACGGCTTTATATTTTTAATATGTGGTCCACTGAAAATGGAACCAACACACAAAAATTAAAGAAATTGATATCCGATGTGCAAG---CCAGCATT-SizeHit CountTotal NormTotal
No Reads
droEle1
AATTT--T----GG--------------------ATATT-----CTTTTTTT-CG-----CTCAT---T------------TGTATGTTA-TCATTTTCTATAGGCGCTTCTTGTAACTGCGAATTTTCACGTATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCCGATAAAACTCGAAAAGTGACTACTTTGGTAGAAG---AGAGCATT-SizeHit CountTotal NormTotal
No Reads
droRho1
TTGT--------GC--------------------ATATT-----ATTTTTTT-CG-----CTCAT---T------------TTTATGTTA-TCATTTTCTATAGGCGCTTCTTGTAACTGAGAATTTTCACGCATGTACATCCTTGATCTTTGGTGCAGGGAAGAGGGCATGAATGCAGAGAAAACTCGGAGAGAGACTAGTTTGGTAGAAG---AAAGATTTASizeHit CountTotal NormTotal
No Reads
droBia1
CTTTT--TAT------C-AATCG--GTT-----CTAATAATTT------TG-TCG-----CTTTT---A--TTTAAAA---TGTT-TGTT-TTCATTTTCAAAGGCGATTCGTATTATTGTGTATTTTCACGATTGTATATTTTAAATTTATGGTGCACCAAAGATGGTAGGAACGCAATGAAATTACAAGAAGCGATCGAAGCTGTTAAAT---GTAGCATT-SizeHit CountTotal NormTotal
No Reads
droTak1
AAATT--ATTTTATG-T-ATTGT---AT-TTGG-ATTTT-----CCTTTCTT-CG-----CTCAT---T------------TGTTTGTTA-TAATTTTCTATAGGCGCT---TGTAACTGCTAATTTTCACGCATGTACATCTTTGATCTTTGGTGCACAGAAGAGGGCAAAAATGCAGATAAAACTCGAAGAGTGACAACTTTGGTAGAAG---AAAGCATT-SizeHit CountTotal NormTotal
No Reads
droEug1
GTCTT--TCT------T-GTTTG--TTC-----TTATTAGCTT------TG-ATATTTAAT---TTTT-AATGCGTTATTT-----CTTT-ATTAATTTGGTAGGTGACTCTTTTCAATGTGTCTTCCCTCGGTTGTACATATTCAATTATTGGTGTATAACAATCGGCACCAACGAAAAAAAATAT-GGATGGTTATCCATCATGTAAATAGCAGCAATATT-SizeHit CountTotal NormTotal
No Reads
dm3
ATTTT-------GTA-T-ATTCA--TTT-----TAAAGATTTTTATCTTTTT-CG-----TGCATT--T------------TTTTTCGAA-TTTGTTTTCATAATCCCTTCTTATAAGTGTGTGTTTTCACGC------ATTTTTGAGTTCTGGTGCATAGAACAGCGCTCGTATGCAGAAAAAGGTCAGGCTGTGCTGAATTCAGTAATAA---TTAGCATT-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................C------ATTTTTGAGTTCTGGTGCAT.................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AAAAAGGTCAGGCTGTGCTGA........................2123.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................TAGAACAGCGCTCGTATGCAG.............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................ATAGAACAGCGCTCGTATGCA..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TCAGGCTGTGCTGAATTCAGTAATAA---T........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGAA-TTTGTTTTCATAATCCCTTC.................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................T--T------------TTTTTCGAA-TTTGTTTTCATAATCCCT...................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TATGCAGAAAAAGGTCAGGCT...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................TAATCCCTTCTTATAAGTGTGTGTTTTCA..............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TGAGTTCTGGTGCATAGAACAGCGC.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................TGCAGAAAAAGGTCAGGCTGTGCTGA........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTTGAGTTCTGGTGCATAGAACAGCGC.......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GCGCTCGTATGCAGAAAAAGGTCAGGC................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTTCATAATCCCTTCTTATAAGTG........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TTTTGAGTTCTGGTGCATAGAACAGCGC.......................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGGTGCATAGAACAGCGCTCGT...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTTGTTTTCATAATCCCTTCTTATAAG..........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTTTCACGC------ATTTTTGAGTTCTGGT.....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTCTGGTGCATAGAACAGCGCTCGT...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................ATTTTTGAGTTCTGGTGCATAGAACA...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AGAAAAAGGTCAGGCTGTGCTGAATT.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ATAGAACAGCGCTCGTATGCAGAA...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AAAAGGTCAGGCTGTGCTGA........................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AAAGGTCAGGCTGTGCTG.........................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................TTATCTTTTT-CG-----TGCATT--T------------TTT............................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AATTT--AAAG------A-AA---------------TTT-----TTATTTTT-CG-----CGAAT---T------------TTTTTCGAA-TTTGTTTTCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTTAGCTTTGGTGTACAAAAGAGGGCTCGTATGCAGAAAAAGCTGAGGCTGTGCTGAATTCAGTAATAA---TTAGCATT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................CAAAAGAGGGCTCGTATGCAGAAAAAGC......................................2811.00100000001000000000
..........................................................................................................................................................TGTACAAAAGAGGGCTCGTATGCAGAAAAA........................................3011.00100000001000000000
..................................................TT-CG-----CGAAT---T------------TTTTTCGA.......................................................................................................................................1811.00100000000001000000
..........................................................................................................................................................TGTACAAAAGAGGGCTCGTATGCAG.............................................2511.00100000000010000000
.................................................................................................................................................TAGCTTTGGTGTACAAAAGAG..........................................................2111.00100000000001000000
..........................................................................................................................................................TGTACAAAAGAGGGCTCGTATGCAGA............................................2611.00100000001000000000
.........................................................................................................................................................................TCGTATGCAGAAAAAGCTGAGGCTGTGC...........................2811.00100000001000000000
..............................................................................................................................................................................TGCAGAAAAAGCTGAGGCTGTGCTGAA.......................2711.00100000000010000000
..........................................................................................................................................TATTTTTTAGCTTTGGTGTACAAAAGA...........................................................2711.00100000000010000000
....................................................................T------------TTTTTCGAA-TTTGTTTTCATAGGC......................................................................................................................2520.50100000000100000000
.....................................................................................TCGAA-TTTGTTTTCATAGGCGCTT..................................................................................................................2420.50100000000010000000
....................................................................................TTCGAA-TTTGTTTTCATAGGC......................................................................................................................2120.50100000000010000000
...................................................................................................CATAGGCGCTTCTTATAAGTGTGT.....................................................................................................2460.17100000000001000000
droSec2
TTTT--------GTA-T-ATTCA---TT-T---TAAAGATTTTTAGTTTTTT-CG-----TGCCG---T------------TTTTTCGAA-TCTTTTTTCATAGGCGCTTCTTATAAGTGTGTGTTTTCACGCATGCATATTTTTCAGCTTTGGTGCACAGAAGAGGGCTCGTATGCAGAAAAGAT-CAGGCTGTGCTGAATTCTGTGCTAA-ATTCAGAATT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAATT--TTC---AA-T-GCTCATTTAA-----TTAATTATTT------TG-TCA-----T---TTTTTCTGTGTAAATT------TGAC-TTGGCTTAAGACGGCGATTTGTATCAGTGTGTGTTTGAACGCCATCACATTTTTAATTTATGGTGCACAAAAAAGGGTACCTATACAGAAAAAATACAAGAAATTATCACTGCTGTACGAG---ATGAAATTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................CAAGAAATTATCACTGCTGTACGAG---A........2662.171303100000009
..............................................................................................................................................................................................GAAATTATCACTGCTGTACGAG---ATGA.....2661.8311010000000010
..............................................................................................................................................................................................GAAATTATCACTGCTGTACGAG---A........2361.33808000000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTATC............................................................................................................2541.00403100000000
..............................................................................................................................................................................................GAAATTATCACTGCTGTACGAG---ATG......2560.83505000000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTATCA...........................................................................................................2640.75303000000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTATCAG..........................................................................................................2740.75303000000000
.................................................................TTTTCTGTGTAAATT------TGAC-TTGGCT...............................................................................................................................2540.75302100000000
..........................................................................................................................................................TGCACAAAAAAGGGTACCTATACAGA............................................2630.67202000000000
..........................................................................TAAATT------TGAC-TTGGCTTAAGACGGC......................................................................................................................2540.50200200000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTA..............................................................................................................2340.50201000010000
............................................................T---TTTTTCTGTGTAAATT------TGAC-TTGGC................................................................................................................................2640.50200200000000
...........................................................................................TTGGCTTAAGACGGCGATTTG................................................................................................................2140.50202000000000
...........................................................................................TTGGCTTAAGACGGCGATTTGT...............................................................................................................2240.50200000020000
.........................................................................................................................................................................................TACAAGAAATTATCACTGCTGTACGAG---A........2860.33200200000000
..............................................................................................................................................................................................GAAATTATCACTGCTGTACGAG---AT.......2460.33202000000000
....................................................................................................................AGTGTGTGTTTGAACGCCATCACATT..................................................................................2640.25101000000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTATT............................................................................................................2540.25101000000000
..........................................................................................................................TGTTTGAACGCCATCACATTTTT...............................................................................2340.25101000000000
..............................................................................TT------TGAC-TTGGCTTAAGACGGCGATT..................................................................................................................2540.25101000000000
.....................................................................CTGTGTAAATT------TGAC-TTGGCT...............................................................................................................................2140.25101000000000
................................................................................................................................................TAATTTATGGTGCACAAAAAAGGGTA......................................................2640.25101000000000
...............................................................................................................................................TTAATTTATGGTGCACAAAAAAGGGTA......................................................2740.25101000000000
......................................................................................TGAC-TTGGCTTAAGACGGCGATTTG................................................................................................................2540.25101000000000
............................................................................................TGGCTTAAGACGGCGATTTGTATCAG..........................................................................................................2640.25101000000000
................T-GCTCATTTAA-----TTAATTATTT------TG-TCA-----T---................................................................................................................................................................2740.25101000000000
................................................................................................TTAAGACGGCGATTTGTA..............................................................................................................1840.25101000000000
............................................................................................TGGCTTAAGACGGCGATTTGTAT.............................................................................................................2340.25101000000000
..........................................................................................................................TGTTTGAACGCCATCACATTTTTAATT...........................................................................2740.25101000000000
............................................................T---TTTTTCTGTGTAAATT------TGAC-TTGGCT...............................................................................................................................2740.25100100000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTATCAGTG........................................................................................................2940.25100100000000
.................................................................................................TAAGACGGCGATTTGTATCAGTGTG......................................................................................................2540.25101000000000
...........................................................................................TTGGCTTAAGACGGCGATTTGTAT.............................................................................................................2440.25100100000000
............................................................T---TTTTTCTGTGTAAATT------TGAC-TTGGCC...............................................................................................................................2740.25100100000000
..................................................................................................................TCAGTGTGTGTTTGAACGCCATCACATT..................................................................................2840.25101000000000
...................................................................TTCTGTGTAAATT------TGAC-TTGGCT...............................................................................................................................2340.25100100000000
...........................................................................................................ATTTGTATCAGTGTGTGTTTGAACGCC..........................................................................................2760.17101000000000
...................................................................................................................................................................................................TATCACTGCTGTACGAG---ATG......2060.17101000000000
............................................................................................................................................................................TATACAGAAAAAATACAAGAAATTA...........................2560.17101000000000
...........................................................................................................ATTTGTATCAGTGTGTGTTTGAACGC...........................................................................................2660.17101000000000
....................................................................................................GACGGCGATTTGTATCAGTGTGTGTTT.................................................................................................2760.17101000000000
...........................................................................................................ATTTGTATCAGTGTGTGTTTGAACGCCA.........................................................................................2860.17101000000000
......................................TATTT------TG-TCA-----T---TTTTTCTGTGTAAATT------..........................................................................................................................................2760.17101000000000
.........................................................................................................................................................................................TACAAGAAATTATCACTGCTGTACGA.............2660.17100000010000
...........................................................................................................................................................................................CAAGAAATTATCACTGCTGTACGA.............2470.14101000000000

Generated: 05/15/2015 at 03:04 PM