ID:

dpe_251

 Coordinate:

scaffold_26:691598-691683 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.4 -34.9 -34.9 -34.9

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dpe_251  scaffold_26:691598-691622 +
  2. scaffold_52:151231-151255 -
  3. dpe_252  scaffold_661:4413-4437 -
star

Sense Strand Reads

TAGCGCGACCCGTGCTAAGGCGCCGTAAGGCACCCCCACGGTTGCGGCACCAAAGAGTGACCAGCAAAGTGGAGTTCTTCGACCCGCCTGGAAATCGCAGGCGTCAGCACTCTGGTTCATCGCTTTTCCCGGATCCGCCGAAAGGCTCCGTAGATTCCACGTGCCGTATCAACAAGCGATCCGCAA
***********************************...((...((((..((.((((((((..(((....((((((.((..(((..(((((.......)))))))))).)))))))))..))))))))...))..))))..........))************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 M021
embryo
 V042
embryo
..................................................CAAAGAGTGACCAGCAAAGTGGAGT............................................................................................................... 25 0 3 17.67 53 49 4 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGATC................................................... 25 0 1 15.00 15 15 0 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGAT.................................................... 24 0 1 14.00 14 14 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACA............ 24 0 1 8.00 8 8 0 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGA..................................................... 23 0 1 7.00 7 7 0 0 0
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGA..................................................... 24 0 1 4.00 4 4 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGGAG................................................................................................................ 24 0 3 3.67 11 11 0 0 0
...............................................................................................................CTGGTTCATCGCTTTTCCCGGAT.................................................... 23 0 1 3.00 3 3 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTATCAAC............. 23 0 1 2.00 2 2 0 0 0
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAGCGATC..... 28 0 1 2.00 2 2 0 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGATCC.................................................. 26 0 1 2.00 2 2 0 0 0
..................................................................................................................................................TCCGTAGATTCCACGTGCCGTATCA............... 25 0 1 2.00 2 2 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGGAGTTC............................................................................................................. 27 0 3 1.33 4 4 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGGA................................................................................................................. 23 0 3 1.33 4 4 0 0 0
................................................................................................................TGGTTCATCGCTTTTCCCGGATC................................................... 23 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................ATTCCACGAGCCGTATCAACAAGCGATCC.... 29 1 1 1.00 1 1 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGGAGTT.............................................................................................................. 26 0 3 1.00 3 3 0 0 0
.....................................................................................................................................................GTAGATTCCACGTGCCGTATCA............... 22 0 1 1.00 1 0 0 1 0
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGATC................................................... 26 0 1 1.00 1 1 0 0 0
.............................................................................................................TTCTGGTTCATCGCTTTTCCCG....................................................... 22 1 1 1.00 1 1 0 0 0
.........................TAAGGCACCCCCACGGTTGCGGCACCAA..................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACAAG.......... 26 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTATCAA.............. 22 0 1 1.00 1 1 0 0 0
...............TAAGGCGCCGTAAGGCACCCCCACGG................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
..................................................................................................................................................TCCGTAGATTCCACGTGCCGTATCAA.............. 26 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................AGATTCCACGTGCCGTATCAACAAG.......... 25 0 1 1.00 1 1 0 0 0
...............................................................................................................CTGGTTCATCGCTTTTCCCGGATC................................................... 24 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACAAGCGA....... 29 0 1 1.00 1 1 0 0 0
.........................................................................................................AGCACTCTGGTTCATCGCTTTTCCCGGA..................................................... 28 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACAA........... 25 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................TCCACGTGCCGTATCAACAAGCGA....... 24 0 1 1.00 1 1 0 0 0
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGAT.................................................... 25 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAGCG........ 25 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAG.......... 23 0 1 1.00 1 1 0 0 0
...............................................................................................................CTGGTTCATCGCTTTTCCCGGA..................................................... 22 0 1 1.00 1 1 0 0 0
..............................................................................................................TCTGGTTCGTCGCTTTTCCCGGATC................................................... 25 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAGCGA....... 26 0 1 1.00 1 1 0 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGATT................................................... 25 1 1 1.00 1 1 0 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCG....................................................... 21 0 1 1.00 1 1 0 0 0
..............................................................................................................TCTGGTTCATCGCTTTTCCCGG...................................................... 22 0 1 1.00 1 1 0 0 0
......................................................................................................................................................TAGATTCCACGTGCCGTA.................. 18 0 1 1.00 1 1 0 0 0
.............................................................................................................CTCTGGTTGATCGCTTTTCCCGGA..................................................... 24 1 1 1.00 1 1 0 0 0
..................................................................................................................................................TCCGTAGATTCCATGTGCCGTATCA............... 25 1 1 1.00 1 1 0 0 0
.....................................................................................................................................................GTAGATTCGACGTGCCGTATCAA.............. 23 1 1 1.00 1 1 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGG.................................................................................................................. 22 0 3 0.67 2 2 0 0 0
...................................................AAAGAGTGACCAGCAAAGTGGAGT............................................................................................................... 24 0 3 0.67 2 2 0 0 0
...........................................................................TCTTCGACCCGCCTGGAAATCGCA....................................................................................... 24 0 3 0.67 2 2 0 0 0
..............................................................................................TCGCAGGCGTCAGCACTCTGGTTC.................................................................... 24 0 2 0.50 1 1 0 0 0
..............................................................................................................ACTGGTTCATCGTTTTTCCCGGATC................................................... 25 2 2 0.50 1 1 0 0 0
..................................................CAAAGAGTAACCAGCAAAGTGGAGT............................................................................................................... 25 1 3 0.33 1 1 0 0 0
.....................................................AGAGTGACCAGCAAAGTGGAGTTC............................................................................................................. 24 0 3 0.33 1 1 0 0 0
......................................................GAGTGACCAGCAAAGTGGAGTTCT............................................................................................................ 24 0 3 0.33 1 1 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGCAGT............................................................................................................... 25 1 3 0.33 1 1 0 0 0
................................................................CAAAGTGGTGTTCTTCGACCCGCCT................................................................................................. 25 1 3 0.33 1 1 0 0 0
...........................................................................TCTTCGACCCGCCTGGAAATCGCAG...................................................................................... 25 0 3 0.33 1 1 0 0 0
..................................................CAAAGAGTGACCAGCAAAGGGGTA................................................................................................................ 24 3 3 0.33 1 0 0 0 1
.........................................................TGACCAGCAAAGTGGAGTTCTTCGAC....................................................................................................... 26 0 3 0.33 1 1 0 0 0
.........................................................TGACCAGCAAAGTGGAGTTCTTCGACC...................................................................................................... 27 0 3 0.33 1 1 0 0 0
..................................................CAAAGAGTGACCAGCAAAGTGGAGA............................................................................................................... 25 1 3 0.33 1 1 0 0 0
...........................................................................TCTTCGACCCGCCTGGAAATCGCAGGC.................................................................................... 27 0 3 0.33 1 1 0 0 0
.................................................................AAAGTGGAGTTCTTCGACCCGCC.................................................................................................. 23 0 3 0.33 1 1 0 0 0
....................................................AAGAGTGAACAGCAAAGTGGACT............................................................................................................... 23 2 3 0.33 1 1 0 0 0
................................................................CAAAGTGGAGTTCTTCGACCCGCC.................................................................................................. 24 0 3 0.33 1 1 0 0 0
...................................................................AGTGGAGTTCTTCGACCC..................................................................................................... 18 0 3 0.33 1 1 0 0 0
........................................................................................TGGAAATCGCAGGCGTCAGCAC............................................................................ 22 0 4 0.25 1 0 0 0 1
....................................................................................CGCCTGGAAATCGCAGGCGTCAGCAC............................................................................ 26 0 4 0.25 1 1 0 0 0
............................................................................................AATCGCAGGCGTCAGCAC............................................................................ 18 0 5 0.20 1 1 0 0 0
..............................................................................TCGACCCGCCTGGAAATCGCAGGCG................................................................................... 25 0 14 0.14 2 2 0 0 0
................................CCCCCCGGGTTTCGGCACCA...................................................................................................................................... 20 3 8 0.13 1 1 0 0 0
TAGCGCGACCCGTGCTAAGGCGCCG................................................................................................................................................................. 25 0 13 0.08 1 1 0 0 0
.............GCTAAGGCGCCGTAAGGCACCC....................................................................................................................................................... 22 0 13 0.08 1 1 0 0 0
.............................................................................TTCGACCCGCCTGGAAATCAAC....................................................................................... 22 3 14 0.07 1 1 0 0 0
............................................................................CTTCGACCCGCCTGGAAATCGCAG...................................................................................... 24 0 14 0.07 1 1 0 0 0
.............................................................................TTCGACCCGCCTGGAAATC.......................................................................................... 19 0 14 0.07 1 1 0 0 0
.............................................................................TTCGACCCGCCTGGAAATCGCAGGCGTC................................................................................. 28 0 14 0.07 1 1 0 0 0
..............................................................................................................TCTGGTTCATCGCTATCCCGG....................................................... 21 3 15 0.07 1 1 0 0 0
.........................................................................................GGAAATCGCAGGCGTCAG............................................................................... 18 0 16 0.06 1 1 0 0 0

Anti-sense strand reads

ATCGCGCTGGGCACGATTCCGCGGCATTCCGTGGGGGTGCCAACGCCGTGGTTTCTCACTGGTCGTTTCACCTCAAGAAGCTGGGCGGACCTTTAGCGTCCGCAGTCGTGAGACCAAGTAGCGAAAAGGGCCTAGGCGGCTTTCCGAGGCATCTAAGGTGCACGGCATAGTTGTTCGCTAGGCGTT
************************************...((...((((..((.((((((((..(((....((((((.((..(((..(((((.......)))))))))).)))))))))..))))))))...))..))))..........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V042
embryo
 V111
male body		 V057
head
.................................................................................................GTCCGCAGTCGTGAGACCAAGTA.................................................................. 23 0 2 31.50 63 63 0 0 0 0
..................................................................................................TCCGCAGTCGTGAGACCAAGTA.................................................................. 22 0 2 21.00 42 25 17 0 0 0
................................................................................................CGTCCGCAGTCGTGAGACCAAGTA.................................................................. 24 0 2 13.00 26 25 0 0 1 0
...................................................................................................CCGCAGTCGTGAGACCAAGTA.................................................................. 21 0 2 10.50 21 4 17 0 0 0
.........................................................................................................................................GGCTTTCCGAGGCATCTAAGGTG.......................... 23 0 1 5.00 5 4 0 0 1 0
.................................................................................................GTCCGCAGTCGTGAGACCAAGT................................................................... 22 0 2 4.50 9 9 0 0 0 0
..............................................................................................AGCGTCCGCAGTCGTGAGACCAAGT................................................................... 25 0 2 3.50 7 7 0 0 0 0
................................................................................................CGTCCGCAGTCGTGAGACCAAGT................................................................... 23 0 2 3.00 6 6 0 0 0 0
...............................................................................................GCGTCCGCAGTCGTGAGACCAAGTA.................................................................. 25 0 2 2.50 5 5 0 0 0 0
..............................................................................................AGCGTCCGCAGTCGTGAGACCAAGTA.................................................................. 26 0 2 2.00 4 4 0 0 0 0
........................................................................................................................................CGGCTTTCCGAGGCATCTAAGGTG.......................... 24 0 1 2.00 2 2 0 0 0 0
..................................GGGTGCCAACGCCGTGGTTTCTCACT.............................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
...................................................................TCACCTCAAGAAGCTGGGCGGACCTT............................................................................................. 26 0 3 2.00 6 2 4 0 0 0
....................................................................CACCTCAAGAAGCTGGGCGGACCTT............................................................................................. 25 0 3 1.67 5 1 3 1 0 0
......................................................................CCTCAAGAAGCTGGGCGGACCTT............................................................................................. 23 0 3 1.00 3 1 2 0 0 0
..................................GGGTGCCAACGCCGTGGTTTCTCACTG............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................CTTTCCGAGGCATCTAAGGTG.......................... 21 0 1 1.00 1 1 0 0 0 0
............................................................................................TTAGCGTCCGCAGTCGTGAGACCAAGTA.................................................................. 28 0 2 1.00 2 2 0 0 0 0
........................CATTCCGTGGGGGTGCCAA............................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
........................................................................TCAAGAAGCTGGGCGGACCTTT............................................................................................ 22 0 3 1.00 3 2 1 0 0 0
........................................................................................................................................CGGCTTTCCGAGGCAGCTAAGGTG.......................... 24 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................................AGGCGGCTTTCCGAGGCACCTAAGGTG.......................... 27 1 1 1.00 1 1 0 0 0 0
...............................................................................................GCGTCCGCAGTCGTGAGACCAAGT................................................................... 24 0 2 1.00 2 2 0 0 0 0
.................................................................................................GTCCGCAGTCGTGACACCAAGTA.................................................................. 23 1 2 1.00 2 2 0 0 0 0
...................................................................TCACCTCAAGAAGCTGGGCGGACCTTT............................................................................................ 27 0 3 1.00 3 1 2 0 0 0
....................................................................................................CGCAGTCGTGAGACCAAGTA.................................................................. 20 0 2 1.00 2 1 0 1 0 0
....................................................................CACCTCAAGAAGCTGGGCGGACCTTT............................................................................................ 26 0 3 1.00 3 0 3 0 0 0
..................................................................................................TCCGCAGTCGTGAGACCAAGT................................................................... 21 0 2 1.00 2 2 0 0 0 0
.........................................................................................................................................GGCTTTCCGAGGCTTCTAAGGTG.......................... 23 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................GCATCTAAGGTGCACGGCATA................. 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................AGGCGGCTTTCCGAGGCATCTAAGGTG.......................... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................CGGCTTTCCGAGGCATCTAAGATG.......................... 24 1 1 1.00 1 1 0 0 0 0
.............................CGTGGGGGTGCCAACGCCGTG........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................CGTGAGACCAAGTAGCGAAAAGGGC....................................................... 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................GCGTCCGCAGTCGTGGGACCAAGT................................................................... 24 1 2 1.00 2 2 0 0 0 0
....................................................................................................................................TAGGCGGCTTTCCGAGGCATC................................. 21 0 1 1.00 1 0 1 0 0 0
........................................................................TCAAGAAGCTGGGCGGACCTT............................................................................................. 21 0 3 0.67 2 2 0 0 0 0
......................................................................CCTCAAGAAGCTGGGCGGACCT.............................................................................................. 22 0 3 0.67 2 0 2 0 0 0
...................................................................TCACCTCAAGAAGCTGGGCGGACCT.............................................................................................. 25 0 3 0.67 2 2 0 0 0 0
....................................................................CACCTCAAGAAGCTGGGCGGACC............................................................................................... 23 0 3 0.67 2 0 2 0 0 0
.................................................GGTTTCTCACTGGTCGTTTCACCT................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0
..............................................................................................AGCGTCCGCAGTCGTTAGACCAAGTA.................................................................. 26 1 2 0.50 1 1 0 0 0 0
................................................................................................CGTCCGCAGTCGTGAAACCAAGTA.................................................................. 24 1 2 0.50 1 1 0 0 0 0
................................................................................................CGTCCGCAGTCGTGATACCAAGTA.................................................................. 24 1 2 0.50 1 1 0 0 0 0
...................................................................................................CCGCAGTCGTGAGACCAAGT................................................................... 20 0 2 0.50 1 1 0 0 0 0
....................................................................................................CGCAGTCGTGAGACCAGGTAGCGAA............................................................. 25 1 2 0.50 1 1 0 0 0 0
..................................................................................................TCCGCAGTCGTGAGACCAAGTG.................................................................. 22 1 2 0.50 1 1 0 0 0 0
.....................................................................................................GCAGTCGTGAGACCAAGTA.................................................................. 19 0 2 0.50 1 1 0 0 0 0
..................................................................................................CCCGCAGTCGTGAGACCAAGTA.................................................................. 22 1 2 0.50 1 0 1 0 0 0
............................................................................................AAAGCGTCCGCAGTCGTGAGACCAAGTA.................................................................. 28 2 2 0.50 1 1 0 0 0 0
....................................................................................................CGCAGTCGTGAGACCAAGT................................................................... 19 0 2 0.50 1 1 0 0 0 0
..................................................................................................GCCGCAGTCGTGAGACCAAGTA.................................................................. 22 1 2 0.50 1 1 0 0 0 0
..............................................................................................AGCGTCCGCAGTCGTGAGACCAAG.................................................................... 24 0 2 0.50 1 1 0 0 0 0
..................................................................................................TCCGCAGTCGTGGGACCAAGT................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................................................................TCCGCAGTCGTGAAACCAAGTA.................................................................. 22 1 2 0.50 1 1 0 0 0 0
................................................................................................CGTCCGCAGTCGTGGGACCAAGT................................................................... 23 1 2 0.50 1 1 0 0 0 0
.................................................................................................GTCTGCAGTCGTGAGACCAAGTA.................................................................. 23 1 2 0.50 1 1 0 0 0 0
..............................................................................................AGCGTCCGCAGTCGTGAGACCAA..................................................................... 23 0 2 0.50 1 1 0 0 0 0
..................................................................................................CCCGCAGTCGTTAGACCAAGTA.................................................................. 22 2 2 0.50 1 0 1 0 0 0
................................................................................................GGTCCGCAGTCGTGAGACCAAGTA.................................................................. 24 1 2 0.50 1 1 0 0 0 0
....................................................................................................CGCAGTCGTGAAACCAAGTA.................................................................. 20 1 2 0.50 1 1 0 0 0 0
.................................................................................................GTCCGCAGTCGTGAAACCAAGTA.................................................................. 23 1 2 0.50 1 1 0 0 0 0
.............................................................................................TAGCGTCCGCAGTCGTGAGACCAAGTA.................................................................. 27 0 2 0.50 1 1 0 0 0 0
................................................................................................CGTCCGCAGTCGTGAGACCA...................................................................... 20 0 2 0.50 1 1 0 0 0 0
..............................................CGTGGTTTCTCACTGGTCGTTTCA.................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
..........................................................................AAGAAGCTGGGCGGACCTTT............................................................................................ 20 0 3 0.33 1 0 0 1 0 0
....................................................................CACCTCAAGAAGCCGGGCGGACCTTT............................................................................................ 26 1 3 0.33 1 0 1 0 0 0
......................................................................CCTCAAGAAGCGGGGCGGACCTTT............................................................................................ 24 1 3 0.33 1 0 1 0 0 0
...........................................CGCCGTGGTTCCTCACTGGT........................................................................................................................... 20 1 3 0.33 1 1 0 0 0 0
.................................................GGTTTCTCACTGGTCGTTTCACCTCA............................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
.......................................................................CTCAAGAAGCTGGGCGGACCTTT............................................................................................ 23 0 3 0.33 1 0 1 0 0 0
...................................................................TCACCTCAAGAAGCTGGACGGACCTT............................................................................................. 26 1 3 0.33 1 1 0 0 0 0
.....................................................................ACCTCAAGAAGCTGGGCGGACCTT............................................................................................. 24 0 3 0.33 1 1 0 0 0 0
.........................................................................AAAGAAGCTGGGCGGACCT.............................................................................................. 19 1 3 0.33 1 1 0 0 0 0
.........................................................................CAAGAAGCTGGGCGGACCTT............................................................................................. 20 0 3 0.33 1 1 0 0 0 0
......................................................................CCTCAAGAAGCTGGGCGGACCTTT............................................................................................ 24 0 3 0.33 1 0 0 1 0 0
.......................................................................CTCAAGAAGCTGGGCGGACCTT............................................................................................. 22 0 3 0.33 1 0 1 0 0 0
...............................................ATGGTTTCTCACTGGTCGTTTCACC.................................................................................................................. 25 1 3 0.33 1 1 0 0 0 0
.......................................................................................................................AGCGAAAAAGGCCTAGCCG................................................ 19 2 3 0.33 1 0 0 0 0 1
.................................................GGTTTCTCACTGGTCGTTTCACCTC................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0
....................................................................CACCTCAAGAAGCTGGGCGGAC................................................................................................ 22 0 3 0.33 1 1 0 0 0 0
..................................................GTTTCTCACTGGTCGTTTCACCTC................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0
....................................................................CACCTCAAGAAGCGGGGCGGACCT.............................................................................................. 24 1 3 0.33 1 0 1 0 0 0
....................................................................CACCTCAAGAAGCTGGGCGGACCT.............................................................................................. 24 0 3 0.33 1 1 0 0 0 0
..........................................................................AAGAAGCTGGGCGGACCT.............................................................................................. 18 0 3 0.33 1 1 0 0 0 0
......................................................................CCTCAAGAAGCGGGGCGGACCTT............................................................................................. 23 1 3 0.33 1 0 1 0 0 0
.............................................CCGTGGTTTCTCACTGGTCGT........................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0
...............................................................CGTTTCACCTCAAGAAGCTGGGC.................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
..............................................CGTGGTTTCTCACTGGTCGTT....................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0
............................................GCCGTGGTTTCTCACTGGTCGTTTCACCT................................................................................................................. 29 0 3 0.33 1 1 0 0 0 0
...............................................GTGGTTTCTCACTGGTCGTTTCA.................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
....................................................................CACCTCAAGAAGCGGGGCGGACCTTT............................................................................................ 26 1 3 0.33 1 0 1 0 0 0
..................................................................TTCACCTCAAGAAGCTGG...................................................................................................... 18 0 3 0.33 1 1 0 0 0 0
....................................................................AACCTCAAGAAGCTGGGCGGACCTTT............................................................................................ 26 1 3 0.33 1 1 0 0 0 0
..................................................GTTTCTCACTGGTCGATTCACCTC................................................................................................................ 24 1 3 0.33 1 1 0 0 0 0
.........................................................................AAAGAAGCTGGACGGACCTT............................................................................................. 20 2 5 0.20 1 1 0 0 0 0
..CGCGCTGGGCACGATTCCGCGGCAT............................................................................................................................................................... 25 0 12 0.17 2 2 0 0 0 0
.......TGGGCACGATTCCGCGGCA................................................................................................................................................................ 19 0 12 0.08 1 1 0 0 0 0
...GCGCTGGGCACGATTCCGCGGC................................................................................................................................................................. 22 0 13 0.08 1 1 0 0 0 0
................................................................................................................................................CGAGGCATCTAAGGTGCACGGC.................... 22 0 14 0.07 1 0 0 1 0 0
...............................................................................................................................................CCGAGGCATCTAAGGTGCAC....................... 20 0 14 0.07 1 1 0 0 0 0
...............................................................................................................................................CCGAGGCATCTAAGGTGCACGGC.................... 23 0 14 0.07 1 0 1 0 0 0
................................................................................................................................................CGAGGCATCTAAGGTGCACGG..................... 21 0 14 0.07 1 0 0 1 0 0
.......................................................TCACTGGTCGTTTCACCTCA............................................................................................................... 20 0 15 0.07 1 1 0 0 0 0
..........GCGCAATTCTGCGGCATT.............................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_26:691548-691733 + dpe_251 TAGCGCGACCCGTGCTAAGGCGCCGTAAGGCACCCCCACGGTTGCGGCACCAAAGAGTGACCAGCAAAGTGGAGTTCTTCGACCCGCCTGGAAATCGCAGGCGTCAGCACTCTGGTTCATCGCTTTTCCCGGATCCGCCGAAAGGCTCCGTAGATTCCACGTGCCGTATCAACAAGCGATCCGCAA
dp5 Unknown_group_30:39482-39667 - TAGCGCGACCCGTGCTAAGGCGCCGTAAGGCACCCCCACGGTTGCGGCACCAAAGAGTGACCAGCAAAGTGGAGTTCTTCGACCCGCCTGGAAATCGCAGGCGTCAGCACTCTGGTTCATCGCTTTTCCCGGATCCGCCGAGAGGCTCCGTAGATTCCACGTGCCGCATCAACAAGCGATCCGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TAGCGCGACCCGTGCTAAGGCGCCGTAAGGCACCCCCACGGTTGCGGCACCAAAGAGTGACCAGCAAAGTGGAGTTCTTCGACCCGCCTGGAAATCGCAGGCGTCAGCACTCTGGTTCATCGCTTTTCCCGGATCCGCCGAAAGGCTCCGTAGATTCCACGTGCCGTATCAACAAGCGATCCGCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................CAAAGAGTGACCAGCAAAGTGGAGT...............................................................................................................25317.67530490004
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGATC...................................................25115.00150150000
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGAT....................................................24114.00140140000
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACA............2418.008080000
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGA.....................................................2317.007070000
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGA.....................................................2414.004040000
..................................................CAAAGAGTGACCAGCAAAGTGGAG................................................................................................................2433.67110110000
...............................................................................................................CTGGTTCATCGCTTTTCCCGGAT....................................................2313.003030000
......................................................................................................................................................TAGATTCCACGTGCCGTATCAAC.............2312.002020000
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAGCGATC.....2812.002020000
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGATCC..................................................2612.002020000
..................................................................................................................................................TCCGTAGATTCCACGTGCCGTATCA...............2512.002020000
..................................................CAAAGAGTGACCAGCAAAGTGGAGTTC.............................................................................................................2731.334040000
..................................................CAAAGAGTGACCAGCAAAGTGGA.................................................................................................................2331.334040000
................................................................................................................TGGTTCATCGCTTTTCCCGGATC...................................................2311.001010000
..................................................CAAAGAGTGACCAGCAAAGTGGAGTT..............................................................................................................2631.003030000
.....................................................................................................................................................GTAGATTCCACGTGCCGTATCA...............2211.001100000
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGATC...................................................2611.001010000
.........................TAAGGCACCCCCACGGTTGCGGCACCAA.....................................................................................................................................2811.001010000
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACAAG..........2611.001010000
......................................................................................................................................................TAGATTCCACGTGCCGTATCAA..............2211.001010000
...............TAAGGCGCCGTAAGGCACCCCCACGG.................................................................................................................................................2611.001010000
..................................................................................................................................................TCCGTAGATTCCACGTGCCGTATCAA..............2611.001010000
.......................................................................................................................................................AGATTCCACGTGCCGTATCAACAAG..........2511.001010000
...............................................................................................................CTGGTTCATCGCTTTTCCCGGATC...................................................2411.001010000
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACAAGCGA.......2911.001010000
.........................................................................................................AGCACTCTGGTTCATCGCTTTTCCCGGA.....................................................2811.001010000
......................................................................................................................................................TAGATTCCACGTGCCGTATCAACAA...........2511.001010000
...........................................................................................................................................................TCCACGTGCCGTATCAACAAGCGA.......2411.001010000
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGAT....................................................2511.001010000
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAGCG........2511.001010000
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAG..........2311.001010000
...............................................................................................................CTGGTTCATCGCTTTTCCCGGA.....................................................2211.001010000
.........................................................................................................................................................ATTCCACGTGCCGTATCAACAAGCGA.......2611.001010000
..............................................................................................................TCTGGTTCATCGCTTTTCCCGGATT...................................................2511.001010000
..............................................................................................................TCTGGTTCATCGCTTTTCCCG.......................................................2111.001010000
..............................................................................................................TCTGGTTCATCGCTTTTCCCGG......................................................2211.001010000
......................................................................................................................................................TAGATTCCACGTGCCGTA..................1811.001010000
..................................................CAAAGAGTGACCAGCAAAGTGG..................................................................................................................2230.672020000
...................................................AAAGAGTGACCAGCAAAGTGGAGT...............................................................................................................2430.672020000
...........................................................................TCTTCGACCCGCCTGGAAATCGCA.......................................................................................2430.672020000
..............................................................................................TCGCAGGCGTCAGCACTCTGGTTC....................................................................2420.501010000
.....................................................AGAGTGACCAGCAAAGTGGAGTTC.............................................................................................................2430.331010000
......................................................GAGTGACCAGCAAAGTGGAGTTCT............................................................................................................2430.331010000
...........................................................................TCTTCGACCCGCCTGGAAATCGCAG......................................................................................2530.331010000
.........................................................TGACCAGCAAAGTGGAGTTCTTCGAC.......................................................................................................2630.331010000
.........................................................TGACCAGCAAAGTGGAGTTCTTCGACC......................................................................................................2730.331010000
..................................................CAAAGAGTGACCAGCAAAGTGGAGA...............................................................................................................2530.331010000
...........................................................................TCTTCGACCCGCCTGGAAATCGCAGGC....................................................................................2730.331010000
.................................................................AAAGTGGAGTTCTTCGACCCGCC..................................................................................................2330.331010000
................................................................CAAAGTGGAGTTCTTCGACCCGCC..................................................................................................2430.331010000
...................................................................AGTGGAGTTCTTCGACCC.....................................................................................................1830.331010000
........................................................................................TGGAAATCGCAGGCGTCAGCAC............................................................................2240.251001000
....................................................................................CGCCTGGAAATCGCAGGCGTCAGCAC............................................................................2640.251010000
............................................................................................AATCGCAGGCGTCAGCAC............................................................................1850.201010000
..............................................................................TCGACCCGCCTGGAAATCGCAGGCG...................................................................................25140.142020000
TAGCGCGACCCGTGCTAAGGCGCCG.................................................................................................................................................................25130.081010000
.............GCTAAGGCGCCGTAAGGCACCC.......................................................................................................................................................22130.081010000
.............................................................................TTCGACCCGCCTGGAAATCAAC.......................................................................................22140.071010000
............................................................................CTTCGACCCGCCTGGAAATCGCAG......................................................................................24140.071010000
.............................................................................TTCGACCCGCCTGGAAATC..........................................................................................19140.071010000
.............................................................................TTCGACCCGCCTGGAAATCGCAGGCGTC.................................................................................28140.071010000
.........................................................................................GGAAATCGCAGGCGTCAG...............................................................................18160.061010000
dp5
TAGCGCGACCCGTGCTAAGGCGCCGTAAGGCACCCCCACGGTTGCGGCACCAAAGAGTGACCAGCAAAGTGGAGTTCTTCGACCCGCCTGGAAATCGCAGGCGTCAGCACTCTGGTTCATCGCTTTTCCCGGATCCGCCGAGAGGCTCCGTAGATTCCACGTGCCGCATCAACAAGCGATCCGCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGC.........2365.333203100000010
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGA.....................................................2415.0050500000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAG..........2264.672802710000000
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGG......................................................2314.0040400000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGCGA.......2542.2590800100000
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGATC...................................................2612.0020200000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGCGATC.....2732.0060600000000
TAGCGCGACCCGTGCTAAGGCGCCG.................................................................................................................................................................2532.0060600000000
..........................................................................................................................................CGAGAGGCTCCGTAGA................................1631.6750000000500
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGCG........2441.5060400001100
........CCCGTGCTAAGGCGCCGTAAGGCACCCA......................................................................................................................................................2831.3340000000400
..................................................CAAAGAGTGACCAGCAAAGTGGA.................................................................................................................2331.3340400000000
.............................................................................................................CTCTGGTTCATCGCTTTTCCC........................................................2111.0010010000000
.........................................................................................GGAAATCGCAGGCGTCAGCACTCT.........................................................................2411.0010100000000
.........................................................................................................................................CCGAGAGGCTCCGTAGA................................1721.0020000000200
..................................................CAAAGAGTGACCAGCAAAGTGG..................................................................................................................2231.0030300000000
.............................................................................................................CTCTGGTTCATCGCTTTTCCCGGATCC..................................................2711.0010100000000
.........................TAAGGCACCCCCACGGTTGCGGCAC........................................................................................................................................2511.0010100000000
..........................................................................................GAAATCGCAGGCGTCAGCACTCTGGT......................................................................2611.0010100000000
..................................................................................................................................................TCCGTAGATTCCACGTGCCGCAT.................2350.8040310000000
...........................................................................................................................................................TCCACGTGCCGCATCAACAAGCGATC.....2630.6720200000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAA...........2160.6740400000000
...........................................................................................................................................................TCCACGTGCCGCATCAACAAGC.........2260.5030100000200
...............................................................................................................................CCCGGATCCGCCGAGAGGCTCCG....................................2320.5010100000000
.........................................................................................................................................................ATTCCACGTGCCGCATCAACAAG..........2360.5030210000000
...............................................................GCAAAGTGGAGTTCTTCGACCCGC...................................................................................................2420.5010000000100
.....................................................................TGGAGTTCTTCGACCCGCCTGGAA.............................................................................................2420.5010100000000
.........................................................................GTTCTTCGACCCGCCTGGA..............................................................................................1920.5010100000000
..............................................................................................................................TCCCGGATCCGCCGAGAGGCT.......................................2120.5010100000000
.....................................................................................................................................................GTAGATTCCACGTGCCGCATCAA..............2350.4020200000000
..................................................................................................................................................TCCGTAGATTCCACGTGCCGC...................2150.4020200000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACA............2060.3320200000000
.......ACCCGTGCTAAGGCGCCGTAAGG............................................................................................................................................................2330.3310100000000
...........................................................................................................................................................TCCACGTGCCGCATCAACAAGCGATCCG...2830.3310100000000
..............................................................................................................................................................ACGTGCCGCATCAACAAGCGATCC....2430.3310100000000
.............................................................................................................................................GAGGCTCCGTAGATTCCACGTGCCGCAT.................2830.3310100000000
...CGCGACCCGTGCTAAGGCG....................................................................................................................................................................1930.3310100000000
.........................................................................................................................................................ATTCCACGTGCCGCATCAACAAGC.........2460.3320200000000
TAGCGCGACCCGTGCTAAGGCGCC..................................................................................................................................................................2430.3310010000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGA.........2360.3320200000000
.........................................................................................................................................................ATTCCACGTGCCGCATCAACAAGCGATC.....2830.3310001000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGCGATCC....2830.3310100000000
TAGCGCGACCCGTGCTAAGGCGT...................................................................................................................................................................2330.3310100000000
..................................................CAAAGAGTGACCAGCAAAGTGGAG................................................................................................................2430.3310100000000
....................................................AAGAGTGACCAGCAAAGTGGA.................................................................................................................2130.3310100000000
...........................................................................................................................................................TCCACGTGCCGCATCAACAAG..........2160.3320200000000
TAGCGCGACCCGTGCTAAGGCT....................................................................................................................................................................2230.3310100000000
.....................................................AGAGTGACCAGCAAAGTGGAG................................................................................................................2130.3310000100000
...................................................AAAGAGTGACCAGCAAAGTGG..................................................................................................................2130.3310100000000
TAGCGCGACCCGTGCTAAGG......................................................................................................................................................................2030.3310100000000
..................................................................................CCCGCCTGGAAATCGCAGGA....................................................................................2040.2510100000000
TAGCGCGACCCGTGCTAAGGCGCA..................................................................................................................................................................2440.2510010000000
.............................................................................................................................................................CACGTGCCGCATCAACAAGCGAT......2340.2510100000000
.............................................................................TTCGACCCGCCTGGAAATCGCAGG.....................................................................................2440.2510000100000
............................................................................CTTCGACCCGCCTGGAAATCGC........................................................................................2240.2510100000000
..............................................................................................................................................................ACGTGCCGCATCAACAAGCGA.......2140.2510000100000
..................................................................................................................................................TCCGTAGATTCCACGTGCCGCATC................2450.2010100000000
......................................................................................................................................................TAGATTCCACGTGCCGCATCAACAAG..........2650.2010100000000
.............GCTAAGGCGCCGTAAGGCACCC.......................................................................................................................................................2250.2010100000000
..........CGTGCTAAGGCGCCGTAAGGCACC........................................................................................................................................................2450.2010100000000
......................................................................................................................................................TAGATTCCACGTGCCGCATCAAC.............2350.2010100000000
....................................................................................................................................................CGTAGATTCCACGTGCCGCAT.................2150.2010100000000
..................................................................................................................................................TCCGTAGATTCCACGTGCCGCATCAA..............2650.2010100000000
...................................................................................................................................................CCGTAGATTCCACGTGCCGC...................2050.2010100000000
...................................................................................................................................................CCGTAGATTCCACGTGCCGCATCAACA............2750.2010100000000
..........................................................................................................................................................TTCCACGTGCCGCATCAAC.............1960.1710100000000
...........................................................................................................................................................TCCACGTGCCGCATCAACAAGA.........2260.1710100000000
.........................................................................................................................................................ATTCCACGTGCCGCATCAACA............2160.1710100000000
.........................................................................................................................................................ATTCCACGTGCCGCATCAACAAGA.........2460.1710100000000
..........................................................................................................................................................TTCCACGTGCCGCATCAACAAGT.........2360.1710100000000
.........................................................................................................................................................ATTCCACGTGCCGCATCAACAA...........2260.1710100000000

Generated: 05/15/2015 at 03:00 PM