ID:

dpe_25

 Coordinate:

scaffold_0:8195081-8195154 -

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.0 -22.8 -22.5

Flybase annnotation

intron [Dper\GL23211-in]; utr5 [utr5_plus_11684]; CDS [Dper\GL23211-cds]

No Repeatable elements found

Sense Strand Reads

CTGGTGCGCATCGGCCTCAAGGAGTACACGTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTTATTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGAGCTCTTCAAGGAGCTGGAACCGGCCGATCTCGACT

**************************************************((((((((.((((.((((((((.((((((((......))).))))).)))))))).))))....))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057

head

 V050

head

 M042

female body

 M021

embryo

 V042

embryo

 V111

male body
....................................................................................................TTTCACCTATCGTTCCATTTGCAG.................................................. 24 0 1 2230.00 2230 1041 534 415 115 89 36
....................................................................................................TTTCACCTATCGTTCCATTTGC.................................................... 22 0 1 1594.00 1594 577 594 191 94 131 7
....................................................................................................TTTCACCTATCGTTCCATTTGCA................................................... 23 0 1 1541.00 1541 1003 305 172 5 41 15
....................................................................................................TTTCACCTATCGTTCCATTTGCAGT................................................. 25 1 2 947.50 1895 862 467 226 41 167 132
....................................................................................................TTTCACCTATCGTTCCATTTG..................................................... 21 0 1 373.00 373 104 45 76 137 10 1
..................................................GTAAGTGGTGTAGATGAAACA....................................................................................................... 21 0 1 106.00 106 2 8 3 43 19 31
..........................................................................................................CTATCGTTCCATTTGCAG.................................................. 18 0 1 64.00 64 0 0 64 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGA................................................. 25 1 1 64.00 64 19 13 19 0 12 1
.....................................................................................................TTCACCTATCGTTCCATTTGCAG.................................................. 23 0 1 63.00 63 8 1 53 0 0 1
..................................................GTAAGTGGTGTAGATGAAAC........................................................................................................ 20 0 1 49.00 49 5 1 1 19 4 19
.........................................................................................................CCTATCGTTCCATTTGCAG.................................................. 19 0 1 37.00 37 0 0 37 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAA.................................................. 24 1 1 34.00 34 6 2 23 1 2 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAC.................................................. 24 1 1 33.00 33 8 1 16 6 1 1
....................................................................................................TTTCACCTGTCGTTCCATTTGCAG.................................................. 24 1 1 30.00 30 2 2 26 0 0 0
........................................................................................................ACCTATCGTTCCATTTGCAG.................................................. 20 0 1 26.00 26 0 0 26 0 0 0
.......................................................................................................CACCTATCGTTCCATTTGCAG.................................................. 21 0 1 24.00 24 0 0 24 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAT.................................................. 24 1 1 23.00 23 18 4 0 0 1 0
....................................................................................................TTTCACCTATCGTTCCATTTTCAG.................................................. 24 1 1 23.00 23 15 3 3 0 2 0
......................................................................................................TCACCTATCGTTCCATTTGCAG.................................................. 22 0 1 20.00 20 1 0 19 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTGCA................................................... 22 0 1 20.00 20 8 7 5 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTGC.................................................... 21 0 1 16.00 16 6 1 9 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGC................................................. 25 1 1 15.00 15 5 2 1 2 5 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGTT................................................ 26 1 2 14.50 29 16 6 6 0 0 1
.....................................................................................................TTCACCTATCGTTCCATTTGCAGT................................................. 24 1 2 14.00 28 12 2 12 0 0 2
....................................................................................................TTTCACCTATCGTTCCATTTGCCG.................................................. 24 1 1 13.00 13 10 2 0 0 1 0
..................................................GTAAGTGGTGTAGATGAAACAAAT.................................................................................................... 24 0 1 12.00 12 0 0 1 0 0 11
....................................................................................................TTTCACCTATCGTTCCATTTGCTG.................................................. 24 1 1 10.00 10 9 1 0 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTGCAG.................................................. 24 1 1 10.00 10 8 1 0 1 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCATT................................................. 25 2 2 10.00 20 14 5 1 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTCCAG.................................................. 24 1 1 9.00 9 8 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCA................................................... 23 1 1 9.00 9 7 1 1 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCT................................................... 23 1 1 9.00 9 6 2 1 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTCCA................................................... 23 1 1 9.00 9 7 2 0 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTGCA................................................... 23 1 1 8.00 8 7 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCACC................................................. 25 2 1 8.00 8 2 1 4 1 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCGG.................................................. 24 1 1 8.00 8 5 1 0 1 1 0
....................................................................................................TTTCACCTATCGTTCCATTTTC.................................................... 22 1 1 7.00 7 6 1 0 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGCA................................................... 23 1 1 7.00 7 2 0 5 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCTG.................................................. 24 2 1 7.00 7 6 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGT.................................................... 22 1 1 7.00 7 4 3 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATCTGCAG.................................................. 24 1 1 7.00 7 4 3 0 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGC.................................................... 22 1 1 7.00 7 0 0 7 0 0 0
....................................................................................................TTTAACCTATCGTTCCATTTGCAG.................................................. 24 1 1 6.00 6 3 3 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGTA................................................... 23 1 1 6.00 6 4 1 1 0 0 0
....................................................................................................TTTCACCTAGCGTTCCATTTGCA................................................... 23 1 1 6.00 6 6 0 0 0 0 0
....................................................................................................TTTCACCTATCCTTCCATTTGC.................................................... 22 1 1 6.00 6 4 2 0 0 0 0
....................................................................................................TTGCACCTATCGTTCCATTTGCA................................................... 23 1 1 6.00 6 6 0 0 0 0 0
....................................................................................................TTTCACCTATCGGTCCATTTGCA................................................... 23 1 1 6.00 6 6 0 0 0 0 0
....................................................................................................TTTCACCTTTCGTTCCATTTGCAG.................................................. 24 1 1 6.00 6 1 0 5 0 0 0
....................................................................................................TTTCACATATCGTTCCATTTGC.................................................... 22 1 1 6.00 6 5 1 0 0 0 0
...................................................TAAGTGGTGTAGATGAAACA....................................................................................................... 20 0 1 6.00 6 0 0 0 0 2 4
....................................................................................................TTTCACCTATCGTTCCATTTGCCT.................................................. 24 2 1 6.00 6 5 0 0 0 1 0
....................................................................................................TTTCACCTCTCGTTCCATTTGCAG.................................................. 24 1 1 6.00 6 3 1 2 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTGC.................................................... 22 1 1 6.00 6 3 2 0 1 0 0
....................................................................................................TTTCAACTATCGTTCCATTTGCAG.................................................. 24 1 1 6.00 6 3 3 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATGTGCAG.................................................. 24 1 1 6.00 6 5 1 0 0 0 0
....................................................................................................TCTCACCTATCGTTCCATTTGCA................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................GTAAGTGGTGTAGATGAAA......................................................................................................... 19 0 1 5.00 5 1 0 0 0 1 3
....................................................................................................TTTCACATATCGTTCCATTTGCAG.................................................. 24 1 1 5.00 5 5 0 0 0 0 0
....................................................................................................TTTCACCTATCGTCCCATTTGCA................................................... 23 1 1 5.00 5 5 0 0 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTG..................................................... 20 0 1 5.00 5 1 0 4 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA................................................ 26 2 1 5.00 5 0 0 5 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCT................................................... 23 2 1 5.00 5 5 0 0 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGCAGT................................................. 25 2 2 5.00 10 2 0 8 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTCC.................................................... 22 1 1 5.00 5 3 0 0 1 1 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAAA.............................................. 28 3 1 5.00 5 0 0 5 0 0 0
....................................................................................................TTGCACCTATCGTTCCATTTGCAG.................................................. 24 1 1 5.00 5 4 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAAA................................................. 25 2 1 5.00 5 0 0 4 0 1 0
....................................................................................................TTTCACCTATCGTTCCATTT...................................................... 20 0 1 5.00 5 3 0 2 0 0 0
....................................................................................................TTTCACCTATCGTTCCATGTGCA................................................... 23 1 1 5.00 5 5 0 0 0 0 0
....................................................................................................TTTCACATATCGTTCCATTTGCA................................................... 23 1 1 5.00 5 5 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATT....................................................... 19 0 1 5.00 5 1 1 0 2 1 0
....................................................................................................TTTCACCGATCGTTCCATTTGCAG.................................................. 24 1 1 4.00 4 4 0 0 0 0 0
....................................................................................................TTTCGCCTATCGTTCCATTTGC.................................................... 22 1 1 4.00 4 2 2 0 0 0 0
....................................................................................................TTTCACCTATCGTTCAATTTGCAG.................................................. 24 1 1 4.00 4 4 0 0 0 0 0
....................................................................................................TTTCATCTATCGTTCCATTTGCAG.................................................. 24 1 1 4.00 4 0 2 0 2 0 0
....................................................................................................TTTCAGCTATCGTTCCATTTGCAG.................................................. 24 1 1 4.00 4 2 2 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATGTGC.................................................... 22 1 1 4.00 4 4 0 0 0 0 0
....................................................................................................TTTCATCTATCGTTCCATTTGC.................................................... 22 1 1 4.00 4 2 1 0 0 1 0
....................................................................................................TTTCACCTATCGTTCCATTTGCACA................................................. 25 2 1 4.00 4 1 0 3 0 0 0
....................................................................................................TTTCACCTATCGTCCCATTTGC.................................................... 22 1 1 4.00 4 2 2 0 0 0 0
....................................................................................................TTTCAACTATCGTTCCATTTGC.................................................... 22 1 1 4.00 4 2 2 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGG................................................. 25 0 1 4.00 4 1 0 0 3 0 0
....................................................................................................TTTCACCTACCGTTCCATTTGCA................................................... 23 1 1 4.00 4 4 0 0 0 0 0
....................................................................................................TTTCACCTTTCGTTCCATTTGC.................................................... 22 1 1 4.00 4 2 0 2 0 0 0
....................................................................................................TTTCACCTATCGGTCCATTTGC.................................................... 22 1 1 4.00 4 2 2 0 0 0 0
....................................................................................................TTTCACCTATAGTTCCATTTGCAG.................................................. 24 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................CTTCACCTATCGTTCCATTTGCAG.................................................. 24 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TTTCGCCTATCGTTCCATTTGCAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCCATCGTTCCATTTGCAG.................................................. 24 1 1 3.00 3 2 1 0 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTT...................................................... 19 0 1 3.00 3 0 0 3 0 0 0
....................................................................................................TTTCACCTATCTTTCCATTTGC.................................................... 22 1 1 3.00 3 2 0 1 0 0 0
....................................................................................................TCTCACCTATCGTTCCATTTGC.................................................... 22 1 1 3.00 3 1 2 0 0 0 0
....................................................................................................CTTCACCTATCGTTCCATTTGCA................................................... 23 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCGTGCCATTTGCAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................GTTCACCTATCGTTCCATTTGC.................................................... 22 1 1 3.00 3 1 1 0 0 1 0
....................................................................................................TTTCACCTATCGTTCCATTTGCG................................................... 23 1 1 3.00 3 2 0 0 1 0 0
....................................................................................................TTTCACCTATCGTTCAATTTGC.................................................... 22 1 1 3.00 3 3 0 0 0 0 0
......................................................................................................TCACCTATCGTTCCATTTGCA................................................... 21 0 1 3.00 3 1 1 1 0 0 0
....................................................................................................TGTCACCTATCGTTCCATTTGCA................................................... 23 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCACT................................................. 25 2 2 3.00 6 3 0 2 0 1 0
....................................................................................................TTTCAGCTATCGTTCCATTTGC.................................................... 22 1 1 3.00 3 0 3 0 0 0 0
....................................................................................................TTCCACCTATCGTTCCATTTGCAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTCGC.................................................... 22 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TCTCACCTATCGTTCCATTTGCAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCTATTTGCAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCTTTCCATTTGCA................................................... 23 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCC................................................... 23 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TTTCACCTATAGTTCCATTTGCA................................................... 23 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCTGT................................................. 25 2 2 3.00 6 5 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTACATTTGCA................................................... 23 1 1 3.00 3 1 1 0 0 1 0
....................................................................................................TTTCACCGATCGTTCCATTTGCA................................................... 23 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCAGT................................................. 25 2 2 3.00 6 4 0 2 0 0 0
....................................................................................................TTTCCCCTATCGTTCCATTTGCA................................................... 23 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................TTTCACCTCTCGTTCCATTTGCAGT................................................. 25 2 2 3.00 6 3 0 3 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAA............................................... 27 2 1 3.00 3 0 0 1 0 2 0
....................................................................................................TTTCACCTATAGTTCCATTTGC.................................................... 22 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCCGT................................................. 25 2 2 3.00 6 4 1 0 1 0 0
....................................................................................................TCTCACCTATCGTTCCATTTGCAGT................................................. 25 2 2 3.00 6 3 0 0 0 0 3
....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA................................................ 26 2 2 2.50 5 1 0 4 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGAAC............................................... 27 3 2 2.50 5 0 0 0 5 0 0
....................................................................................................TTTCACCTTTCGTTCCATTTGCAGT................................................. 25 2 2 2.50 5 2 2 1 0 0 0
....................................................................................................TTTCACATATCGTTCCATTTGCAGT................................................. 25 2 2 2.50 5 4 0 0 0 1 0
......................................................................................................TCACCTATCGTTCCATTTGC.................................................... 20 0 1 2.00 2 0 1 1 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTCGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATGTG..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTT..................................................... 21 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCATTCCATTTGC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTGGC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGATCCATTTG..................................................... 21 1 1 2.00 2 1 0 0 1 0 0
....................................................................................................TTGCACCGATCGTTCCATTTGCA................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................TTAAGTGGTGTAGATGAAACA....................................................................................................... 21 1 1 2.00 2 0 0 0 2 0 0
.........................................................................................................CTTATCGTTCCATTTGCAG.................................................. 19 1 1 2.00 2 0 0 2 0 0 0
....................................................................................................TTGCACGTATCGTTCCATTTGCAG.................................................. 24 2 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTGACCTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCAGCTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCATCTATCGTTCCATTTGCTG.................................................. 24 2 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGA.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTAGCGTTCCATTTGCAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTTACCTATCGTTCCATTTGC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTCTCGTTCCATTTGC.................................................... 22 1 1 2.00 2 0 0 2 0 0 0
.......................................................................................................CACCTATCGTTCCATTTGCA................................................... 20 0 1 2.00 2 0 0 2 0 0 0
....................................................................................................TTTCACCTAGCGTTCCATTTGCAGT................................................. 25 2 2 2.00 4 4 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCTATTTGC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
....................................................................................................TTTCACCTCTCGTTCCATTTGCA................................................... 23 1 1 2.00 2 1 0 1 0 0 0
....................................................................................................TGTCACCTATCGTTCCATTTGC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGCAGA................................................. 25 2 1 2.00 2 0 0 2 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTG..................................................... 21 1 1 2.00 2 1 0 1 0 0 0
..................................................GTAAGTGGTGTAGATGAAAT........................................................................................................ 20 1 1 2.00 2 1 0 0 0 0 1
....................................................................................................TTCCACCTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTGCAGA................................................. 24 1 1 2.00 2 1 0 1 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTGCAA.................................................. 23 1 1 2.00 2 0 0 2 0 0 0
....................................................................................................TTTCACCTATCGATCCATTTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGATCCATTTGC.................................................... 22 1 1 2.00 2 1 0 1 0 0 0
....................................................................................................TTTCAACTATCGTTCCATTTG..................................................... 21 1 1 2.00 2 0 1 0 1 0 0
....................................................................................................TGTCACCGATCGTTCCATTTGCAG.................................................. 24 2 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATCTGC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCGG.................................................. 24 2 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTAC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTGCCATTTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCATTCCATTTGCA................................................... 23 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TGTCACCTATCGTTCCATTTG..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCGACCGGTCCATTTGCAG.................................................. 24 3 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCCTTCCATTTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCACTTGCA................................................... 23 1 1 2.00 2 1 0 0 0 1 0
....................................................................................................TTTAACCTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCAACTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATCTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGGAG.................................................. 24 2 1 2.00 2 0 0 2 0 0 0
....................................................................................................GTTCACCTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 1 0 1 0 0 0
....................................................................................................TTTCACCTATCGGTCCATTTGCAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTGCACCTATAGTTCCATTTGCA................................................... 23 2 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTG..................................................... 21 1 1 2.00 2 0 1 0 1 0 0
....................................................................................................TTTCACCTATCGTTCCATATGCA................................................... 23 1 1 2.00 2 1 0 1 0 0 0
....................................................................................................TTTCACCTATTGTTCCATTTGC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATATGC.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCCTTCCATTTGCAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAGAAA............................................... 27 2 1 2.00 2 0 0 2 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGTAG.................................................. 24 2 1 2.00 2 0 0 2 0 0 0
....................................................................................................TTTCAGCTATCGTTCCATTTGCAGT................................................. 25 2 2 2.00 4 3 1 0 0 0 0
....................................................................................................TTTCACCTATCGTCCCATTTGCAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTAAGTGGTGTAGATGAAACAA...................................................................................................... 22 0 1 2.00 2 1 0 0 0 0 1
....................................................................................................TTTCACGTATCGTTCCATTTGCAG.................................................. 24 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................CTTTCACCTATCGTTCCATTTGCAG.................................................. 25 1 2 2.00 4 2 2 0 0 0 0
....................................................................................................TTTCACCTATCGTTCAATTTGCAGT................................................. 25 2 2 2.00 4 3 1 0 0 0 0
....................................................................................................TTTCACCTACCGTTCCATTTGC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTGCACCTATCGTTCCAGTTGC.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACTTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 1 0 0 0 1 0
....................................................................................................TTTCACCCATCGTTCCATTTGC.................................................... 22 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCGCCTATCGTTCCATTTGCA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCGATTTGC.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
....................................................................................................CTTCACCTATCGTTCCATTTG..................................................... 21 1 1 2.00 2 1 0 0 0 1 0
....................................................................................................TTTCACATATCGTTCCATTTGCAT.................................................. 24 2 1 2.00 2 1 1 0 0 0 0
....................................................................................................TTTCACCTATCGGTCCATTTGCAGT................................................. 25 2 2 1.50 3 3 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCGGT................................................. 25 2 2 1.50 3 2 0 0 0 1 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAAT................................................. 25 2 2 1.50 3 0 2 1 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTGCAGT................................................. 25 2 2 1.50 3 2 1 0 0 0 0
....................................................................................................TTTCACGTATCGTTCCATTTGCAGT................................................. 25 2 2 1.50 3 2 0 0 0 1 0
...................................................................................................CTTTCACCTATCGTTCCATTTGC.................................................... 23 1 2 1.50 3 1 2 0 0 0 0
....................................................................................................TTTCACCGATCGTTCCATTTGCAGT................................................. 25 2 2 1.50 3 3 0 0 0 0 0
....................................................................................................TTTCACCCATCGTTCCATTTGCAGT................................................. 25 2 2 1.50 3 2 0 0 0 1 0
....................................................................................................TTTCACCTATCGTTCCATTTCCAGT................................................. 25 2 2 1.50 3 2 1 0 0 0 0
....................................................................................................TTGCACCTATCGTTCCATTTGCAGT................................................. 25 2 2 1.50 3 2 1 0 0 0 0
....................................................................................................TTTCACCTATCGATCCATTTGCAGT................................................. 25 2 2 1.50 3 2 1 0 0 0 0
....................................................................................................TTACACCTATCGTTCCATTTGCA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGACCCATTTG..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCTTTCAATTTGCA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TGTCACCTATCGTGCCATTTGCAGC................................................. 25 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACTTATCGGTCCATTTGCTG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTGCACCTATCGTTACATTTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTAGCGATCCATTTGCAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................CACCTATCCTTCCATTTGCAG.................................................. 21 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTGCACCTATCGTTCCATTTGCC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTCTCGCTCCATTTGC.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TGGCACCTATCGTTCCATTTGCAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTTCACCTATCCTTCCATTTG..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGAAG.................................................. 24 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTGCACCTATCCTTCCATTTGC.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGAAGA................................................. 25 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTGCACCTATCGGTCCATTTGCAGG................................................. 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTCGCAGA................................................. 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATGTGCT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................AACCCGCCGGTCTCGACT 18 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................CTTCACCTATCGTTCCATTT...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCGCATATCGTTCCATTTGCTG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACATACCGTTCCATTTGCAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTTCACCGATCGATCCATTTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTGCACCTATCGTTCCATGTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGGTCCATTTGCTG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTACCGTTCCATTTGTA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGTT................................................... 23 2 1 1.00 1 0 0 0 0 1 0
....................................................................................................TGTCACCTATCGCTCCATTTGCAG.................................................. 24 2 1 1.00 1 0 0 0 0 1 0
..................................................GTAAGTAGCGTAGATGAAACA....................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TGGCACCTATAGTTCCATTTGCA................................................... 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTGCACCTATCGTTCCATTTGCT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCAGA................................................. 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATAGTTACATTTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTACCGGTCCATTTGCTG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTGCC................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTTCACCTCTCGTTCCATTTG..................................................... 21 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTTCACCTATCGTTCCATGTGCTC.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGGTCAATTTGCA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACGTATCGTTCCATTTGCA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTC..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGATCCATTTGCAT.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTGCACCTAGCGTTCCATGTGCA................................................... 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGCACCATTTGCA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTCACCTATCGTTCCATTTGCAGTAAA.............................................. 27 3 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTTCACCTATCGGTCCATTTTCAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................................GTCACCTATCGTTCCATTTGCAG.................................................. 23 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTGCAGCTATCGTTCCATGTGC.................................................... 22 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCTTTCCATTTCCA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTTCACCTATCGTTACAGTTGCAG.................................................. 24 2 1 1.00 1 0 0 0 0 1 0
....................................................................................................TTTCACCGATCGTTCCATGTGCAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCACAC................................................ 26 3 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTGCACCTATCGCTCCATTTGCAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTACACTTATCGTTCCATTTGCC................................................... 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACATATCGTTCAATTTGCAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTCACGTATCGTTCCATTTGCAG.................................................. 23 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTTAACCTACCGTTCCATTTGCT................................................... 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCGATCGGTCCATTTGCA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTGCAGC................................................. 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTGTCGTTCCATTTGGA................................................... 23 2 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTGCAT.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTCAT.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTACACCTATCGTTCCATTTGCAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGCTCCATTTTC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTCTCGTTCCATTTTC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................................TTATCGTTCCATTTGCAG.................................................. 18 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................GTTCACCTATCGTTCCAGGTGCAG.................................................. 24 3 1 1.00 1 0 0 0 0 1 0
....................................................................................................ATTCACCTATCGTTCCACTTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTGG..................................................... 21 1 1 1.00 1 0 0 0 1 0 0
....................................................................................................TTGCGCCTGTCGTTCCATTTGCAG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
......................................................................................................TCACCTATGGTTCCATTTGC.................................................... 20 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................TTTCACCTATCGTTCCAGTTGCATT................................................. 25 3 2 1.00 2 2 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTAAT.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCCCCTATCGTTCCATTTGCTG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTTA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCCGTCGCTCCATTTGCAG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TTCACCTATCGTTCCACTTCCAG.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTTGCAAC................................................. 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCAGTTGCA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TCTCACCTATCGTTCCATTTCC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTGCACCTATCGTTCCATTTT..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................CTTCACCTCTCGTTCCATTTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCATTCCATTTGCAG.................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................GTAAGTGGTGTAGATGATA......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTTACCTATCGTTCCATTTGTC................................................... 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATCTTC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATCTGCCG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCGATCGTTACAGTTGC.................................................... 22 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTAACCTATCGTTACATTGGC.................................................... 22 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTAAATTTGCAGA................................................. 25 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTCCATTCG..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCCCCTATCATTCCATTTGCA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCGATCGTTCAATTTGCT................................................... 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCTATCGTTGCATTTGCAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CTTCACCTATCGTTCCATTTGCAGT................................................. 25 2 2 1.00 2 1 0 0 1 0 0
....................................................................................................TTTCACCTATCTTTCCATTTGCTC.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTTCACCGATCGGTCCATTTGC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................GTTCACCTATCGTTCCATTTTCAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

GACCACGCGTAGCCGGAGTTCCTCATGTGCAGGCACAAGCACGAGTTGCCCATTCACCACATCTACTTTGTTTAATTGGTTGGAAATAACACAACCTAACAAAGTGGATAGCAAGGTAAACGTCCATGCTCCTAGAGCTCGAGAAGTTCCTCGACCTTGGCCGGCTAGAGCTGA

**************************************************((((((((.((((.((((((((.((((((((......))).))))).)))))))).))))....))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_0:8195030-8195204 - dpe_25 confident CTGGTGCGCATCGGCCTCAAGGAGTACACGTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTTA-TTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGAGCTCTTCAAGGAGCTGGAACCGGCCGATCTCGACTA
dp5 2:12275903-12276077 + dps-mir-1010 Known_mirbase CTGGTGCGCATCGGCCTCAAGGAGTACACGTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTTA-TTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGAGCTCTTCAAGGAGCTGGAACCGGCCGATCTCGACTA
droWil2 scf2_1100000004943:12259724-12259899 + dwi_14 confident CTGATACGCATCGGTCTCAAGGAATACACATCCGTATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGATACGAGGATCTCGAGCTGTTCAAAGAACTGGAACCCGCTGACCTCGACTA
droVir3 scaffold_13047:8363145-8363319 - dvi-mir-1010 Known_mirbase CTGATTCGCATCGGTCTCAAGGAGTACACCTCGGTGTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAATT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGAACTGTTCAAGGAACTCGAGCCGGCAGATTTGGATTA
droMoj3 scaffold_6540:27812471-27812644 + dmo_14 confident CTGATACGCATCGGGCTCAAGGAGTACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAT-T-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATTTGGAGCTGTTCAAGGAACTCGAGCCGGCTGATCTGGACTA
droGri2 scaffold_15074:1256090-1256263 + dgr_29 confident TTGATGCGCATTGGCCTCAAGGAGTACACCTCGGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAAACTCTCAACAAT-T-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGAACTGTTCAAGGAACTCGAGCCGGCCGATCTGGATTA
droAna3 scaffold_13340:9102943-9103117 + dan_124 confident CTCATTCGCATCGGACTCAAGGAGTACACTTCCGTGTTCGTGCTTAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTATGAGGACCTGGAGCTTTTCAAGGAGCTGGAACCTGCTGATCTGGACTA
droBip1 scf7180000396712:253082-253256 + CTCATTCGCATCGGACTCAAGGAGTACACTTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTTTTCAAGGAGCTGGAACCCGCTGATCTGGACTA
droKik1 scf7180000302461:1947200-1947374 - CTGATTCGCATTGGCCTCAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTGTTCAAGGAGCTGGAGCCCGCCGATCTCGATTA
droFic1 scf7180000454106:1264854-1265028 + CTGATCCGCATCGGCCTGAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTGTTCAAGGAGCTGGAGCCCGCCGACCTGGACTA
droEle1 scf7180000491280:4685139-4685314 - CTGATTCGCATCGGACTCAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTCGAACTCTTCAAGGAGCTGGAACCCGCCGACCTGGACTA
droRho1 scf7180000779175:38956-39130 + CTGATTCGCATCGGACTCAAGGAGTACACCTCCGTCTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTGTTCAAGGAACTGGAGCCCGCCGATCTGGACTA
droBia1 scf7180000302402:5625480-5625654 - CTCATTCGCATCGGACTCAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTCTTCAAGGAACTGGAACCCGCCGACCTGGACTA
droTak1 scf7180000415711:932871-933046 - CTGATTCGCATCGGGCTCAAGGAGTACACCTCGGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTCTTCAAGGAACTGGAACCCGCCGACCTGGACTA
droEug1 scf7180000409768:235901-236075 + CTGATCCGCATTGGACTCAAGGAGTACACATCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAACCCGCCGACCTGGACTA
dm3 chr3R:18118551-18118722 + dme-mir-1010 Known_mirbase CTAATTCGCATTGGACTCAAGGAGTACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAA----TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCTGACCTGGATTA
droSim2 3r:17645640-17645814 + dsi-mir-1010 Known_mirbase CTGATTCGCATCGGACTCAAGGAGTACACATCCGTATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCTGACCTGGATTA
droSec2 scaffold_0:18476110-18476284 + dse_177 confident CTGATTCGCATCGGACTCAAGGAGTACACATCCGTATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCTGACCTGGATTA
droYak3 3R:18962252-18962427 + dya_96 confident CTGATTCGCATCGGACTCAAGGAGTACACGTCCGTGTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCCGACCTGGATTA
droEre2 scaffold_4820:9960730-9960904 - der_116 confident CTGATTCGCATCGGACTGAAGGAGTACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTCGAGCTGTTCAAGGAACTGGAGCCCGCCGACCTGGATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CTGGTGCGCATCGGCCTCAAGGAGTACACGTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTTA-TTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGAGCTCTTCAAGGAGCTGGAACCGGCCGATCTCGACTASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2412230.00223011541589534104136
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2211594.001594941911315945777
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2311541.001541517241305100315
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................252947.50189541226167467862132
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................211373.003731377610451041
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211106.00106433198231
...........................................................................................................CTATCGTTCCATTTGCAG...................................................18164.00640640000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................25164.00640191213191
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................23163.00630530181
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................20149.004919141519
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................19137.00370370000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................24134.00341232260
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................24133.00336161181
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................20126.00260260000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................21124.00240240000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24123.00230014180
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................22120.00200190010
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22120.0020050780
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21116.0016090160
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................25115.0015215250
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24214.002801202122
..................................................GTAAGTGGTGTAGATGAAACAAAT......................................................................................................24112.00120100011
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25210.00200105140
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................2319.009010260
.....................................................................................................TTTCACCTATCGTTCCATTTGCACC..................................................2518.008140120
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2217.007000340
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................2016.006002004
.....................................................................................................TTTCACCTATCGTTCCATTTGCCT...................................................2416.006001050
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................1915.005001013
......................................................................................................TTCACCTATCGTTCCATTTG......................................................2015.005040010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2615.005050000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................2515.005041000
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................2015.005020030
.....................................................................................................TTTCACCTATCGTTCCATT........................................................1915.005201110
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................2514.004030010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................2514.004300010
......................................................................................................TTCACCTATCGTTCCATTT.......................................................1913.003030000
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2313.003100020
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................2113.003010110
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................2523.006021030
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................2313.003000120
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................2622.505040010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAAC................................................2722.505500000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................2012.002010100
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................2112.002000110
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................2212.002000110
........................................................................................................CACCTATCGTTCCATTTGCA....................................................2012.002020000
..................................................GTAAGTGGTGTAGATGAAAT..........................................................................................................2012.002000011
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................2412.002010010
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................2312.002020000
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................2212.002000011
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2521.503010200
.....................................................................................................TTTCACCTATCGTTCCATTTGTT....................................................2311.001001000
......................................................................................................TTCACCTATCGTTCCATTTGCC....................................................2211.001000100
.....................................................................................................TTTCACCTATCGTTCCATTTC......................................................2111.001000010
.....................................................................................................TTTCACCTATCGTTCCATTTGCACAC.................................................2611.001010000
.....................................................................................................TTTCACCTATCGTTCCATTTTA.....................................................2211.001000010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAC..................................................2511.001000010
dp5
CTGGTGCGCATCGGCCTCAAGGAGTACACGTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTAACCAACCTTTA-TTGTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATCTCGAGCTCTTCAAGGAGCTGGAACCGGCCGATCTCGACTASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2415836.0058361016291676381416501107256113747
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2215745.005745977011502569595566489227
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................2522800.5056010606235831191043228818762447
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2311607.00160706261382971282987291425
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................251730.0073006622781241205
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................211687.00687932651215154512914
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211249.00249083731051172175
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................251230.0023004257104613610145
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................241156.0015602710512630003
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................231132.00132096810122427
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................20197.00970310418430055
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................24167.006705161520200
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21166.0066033126420000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................25150.005001397201000
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24249.509903824101062324
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22137.003702619010000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACC..................................................25130.003002241300000
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20127.002701316430000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24118.00180453420000
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20117.001701303100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................26114.00140910100201
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................22113.00130056110000
.....................................................................................................TTTCACCTATCGTTCCATT........................................................19113.00130441020002
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................26211.502301261100300
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................24110.00100082000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................2519.0090900000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................2528.50170382310000
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2318.0080061010000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2218.0080610000010
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................2418.0080610001000
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................1918.0080100321001
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................2016.0060210100002
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................2526.00120180201000
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2216.0060002400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................2515.0050030000200
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................2315.0050200030000
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................2315.0050012110000
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................2314.0040400000000
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................2213.0030000100020
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................1913.0030101000001
....................................................AAGTGGTGTAGATGAAACA.........................................................................................................1913.0030010200000
..................................................GTAAGTGGTGTAGATGAA............................................................................................................1813.0030100110000
...........................................................................................................CTATCGTTCCATTTGCAG...................................................1813.0030201000000
......................................................................................................TTCACCTATCGTTCCATTT.......................................................1913.0030300000000
........................................................................................................CACCTATCGTTCCATTTGCA....................................................2012.0020101000000
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................2112.0020110000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................2622.0040030000001
......................................................................................................TTCACCTATCGTTCCATTTGCACC..................................................2412.0020020000000
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................1922.0040020200000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGCA.................................................2612.0020100100000
.....................................................................................................TTTCACCTATCGTTCCATTTTA.....................................................2212.0020011000000
..................................................GTAAGTGGTGTAGATGAAACAAATTAAC..................................................................................................2812.0020020000000
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................2012.0020200000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATC..................................................2512.0020110000000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2112.0020001000001
.....................................................................................................TTTCACCTATCGTTCCATTTGCATA..................................................2512.0020100100000
........................................................................................................CACCTATCGTTCCATTTGC.....................................................1912.0020101000000
.....................................................................................................TTTCACCTATCGTTCCATTGC......................................................2112.0020011000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACCA.................................................2612.0020110000000
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2021.5030300000000
.....................................................................................................TTTCACCTATCGTTCC...........................................................1621.5030000000201
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTG.................................................2621.5030300000000
droWil2
CTGATACGCATCGGTCTCAAGGAATACACATCCGTATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGATACGAGGATCTCGAGCTGTTCAAAGAACTGGAACCCGCTGACCTCGACTASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................21116705.00167051563126411269530
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................25211918.00238366781015650166984795
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2219270.00927029413822218314094
...........................................................................................................CTATCGTTCCATTTGCAG...................................................1817648.00764877641000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2416225.006225153312066320191404
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................2112647.0026472367141397993
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2312356.002356111387254881345
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................1912250.00225062242002
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................2011801.00180101801000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2111788.00178811785002
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................2311768.0017683174201211
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2211322.00132211321000
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................201348.003483504181128
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................251207.00207816313248
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................251141.0014151425430
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................241102.0010222005624
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................242101.00202455210734
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22187.00870740211
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................25174.0074651080
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20174.007416911038
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................24172.00724171167
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21170.00709450610
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20160.00602531022
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................26255.0011011408015
.....................................................................................................TTTCACCTATCGTTCCATT........................................................19154.0054502020
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................19149.00490001732
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................25245.00906905322
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................21138.0038038000
........................................................................................................CACCTATCGTTCCATTTGCA....................................................20132.0032129002
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................22128.0028100225
..........................................................................................................CCTATCGTTCCATTTGCA....................................................18123.0023023000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25218.5037010297
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................22118.0018000126
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24117.001734055
.........................................................................................................ACCTATCGTTCCATTTGCA....................................................19115.0015015000
......................................................................................................TTCACCTATCGTTCCATT........................................................18115.0015015000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................20113.0013111001
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................18113.001380140
.......................................................................................................TCACCTATCGTTCCATTTG......................................................19113.0013012001
........................................................................................................CACCTATCGTTCCATTTG......................................................18112.001257000
......................................................................................................TTCACCTATCGTTCCATTT.......................................................19112.0012012000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACC..................................................25112.001222062
..................................................GTAAGTGGTGTAGATGAAACAAATT.....................................................................................................25111.001103080
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................23111.001180003
.......................................................................................................TCACCTATCGTTCCATTT.......................................................18110.0010010000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2527.001400194
..................................................GTAAGTGGTGTAGATGAAACT.........................................................................................................2117.00700043
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2217.00751001
..................................................GTAAGTGGTGTAGATGAAACAT........................................................................................................2217.00700016
...........................................................................................................CTATCGTTCCATTTGCAT...................................................1816.00606000
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................1926.001273011
.........................................................................................................ACCTATCGTTCCATTTGC.....................................................1816.00605001
......................................................................................................TTCACCTATCGTTCCATTTGAG....................................................2215.00505000
.........................................................................................................ACCTATCGTTCCATTTGCG....................................................1915.00505000
..................................................GTAAGTGGTGTAGATGAA............................................................................................................1815.00502021
.....................................................................................................TTTCACCTATCGTTCCATTGC......................................................2124.50911034
............................................................................................................TATCGTTCCATTTGCAGT..................................................1824.00805021
.....................................................................................................TTTCACCTATCGTTCCATTTGG.....................................................2214.00431000
..................................................GTAAGTGGTGTAGATGAAACC.........................................................................................................2114.00400004
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................2324.00803122
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2614.00411002
........................................................................................................CACCTATCGTTCCATTTGC.....................................................1914.00403010
...........................................................................................................CTATCGTTCCATTTGCAGG..................................................1914.00404000
........................................................................................................CACCTATCGTTCCATTTGCAGT..................................................2224.00802033
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................2123.50710213
.....................................................................................................TTTCACCTATCGTTCCATTTCAG....................................................2313.00312000
..........................................................................................................CCTATCGTTCCATTTGCAAG..................................................2013.00303000
droVir3
CTGATTCGCATCGGTCTCAAGGAGTACACCTCGGTGTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAATT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGAACTGTTCAAGGAACTCGAGCCGGCAGATTTGGATTASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................24148864.0048864272301034280341343331906211465457127111636628018210424048146167739061155319026113234786862546939722894761132471582312625432665624546412326612379949317442301972258238733981230113710006681496121828603715291542654654
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................25222055.50441112389714877828601372172325482535692664702291263101821701891483981267754623108813932842001303797651633618254245811155314551117131279994216144266248157216194464038688777785638791922561156123914041724161314741073214418869991203108016311853
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................2117632.007632841344174632191101002111391714224618215831334832526167683513540933534038292110000000000001101228798324178733611957965673758895623226202231
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2316411.0064112154582869146511107189476223130289346179524163671441107592119130157741831323797112144139144760101000000111022327445817906945586750212614828174331193425
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2215362.00536214370332369162702002743011369017319582320916128583166614247194843135045403135150110011210130335118814949824013331047276213165147941931466947384963
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................2512519.0025190223111525020019365321414811761514414470994315100220875751396572022820111307617817225419122254426146235262390368
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................2412203.00220300472826000008352276108719944098395346113071117191821070000000000000000000166101281461281063454219212997163186
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................2111387.001387321812162783334011143851025131064144652330134121000005002008305000445172300633417519314112719716118944
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................2621079.00215801731301601007641100011000116242532491101126047131677128200000100010001000024100451361201722754819121162137214285
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................261910.00910000000000000100000000000112000000001010000000000000000000030000109596682021244510597174208
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................262546.50109312252241583000608660203001510217981124402475129010317631000022213462420015101141262214376684014011805213
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................252494.509890036103000011031030011069361122151105281160000106120272163000472001583824053403226514137657391113
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................231408.0040801621204000000063120222144519112362367611000000001020000001102120013182163315112036294140
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................241306.003062604103000002110001042022425000241312310000001000120001000022001122202010697972024282925
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................251297.002973701741010000100120000000411320001201021000000000010121000002623002915452651063265
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................201249.0024911123002292400000230100101030301000001300000001100110010000183502100323352022253022403
.....................................................................................................TTTCACCTATCGTTCCATT........................................................191234.002341541200000000023030204224012011020101210000000000011000000200001401027473326281120021
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................241227.0022700424010000050124289601371093582530611632810000000000000000000513300277660116174422
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................251207.0020700710020100010010000000211165000015021124623000000000100000000000000301312700000049111612
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................252160.003200026403260120014248261865824361021235823011050000010000202101001268101133316215341113
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................242152.50305114995115330023162021012362760001271580580000000000010122000567502078546181465841218
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................231141.001410031361000000010111052813241211111121601010009000000000000000000202101000102200300100
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20190.00900361003000001050123204312165023120415243000000000000000000004000211003020010000
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22169.006901260201000000023020011000100203030133211000000000000000000115000300000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAT................................................27256.501130020100000021010000000003246100060534110000000000001000000000000035100011324105169
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................25155.005541118100000011000000010030000000000000000000000020000001000231200011233011100000
...........................................................................................................CTATCGTTCCATTTGCAG...................................................18147.00470070000010000000001100000000000030010100000000000000000010101000011140907500010
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21133.003300192000000000020010101010000000000000000000000000000000000002000000100011000001
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................23132.00320060000000000000000000003211000020012110000000000000000000000000021000000002142
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAG................................................27231.50630010000000000000000000001122000040011210000000000000000000000001074500000155388
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTG.................................................26231.5063001000100000100000000000000100010002111000000000100001000000000001011425612802000
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................18130.00300010000000000031021001103300110220051000000000000000000000000000000010100000000
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................22128.00280110040000000000010000010010210200000003000000000000000100202000001010100210000
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................19227.005410102000000000010002100100000010200010000000000001100011001000170000021525400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................25125.00250000000000000000000000000120000000114120000000000000000000000000011010000002134
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................19124.00240000011111100010000000000001000000000100000000000000000000014500001001000101100
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTCT................................................27223.50471021100000000000000010000121021501000011000000100100001000000000112212104203103
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................20223.50471000002010000000000000021010000000100100000000110011000000000050000075515400001
.....................................................................................................TTTCACCTATCGTTCCATTTGCCT...................................................24123.00230020002000000000000010000100110300000012000000000100101000101000000010101010000
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................24122.00220021000000001000000000000000000000000000000000000000000000001000021300000005141
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................25220.50410000102000000000000000001012100010101210000000000010001000000000024310000110256
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................22120.00200024000000000000000000200000000010000000000000000000000000000100032100100010110
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAAA.................................................26219.50390010000000000000000000016030000020220080000000000000000000000004021100000000105
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20119.00190380020000000000010000000000000000000000000000000000000000000000000001210100000
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................19119.00190130000000000000001000000000000000010100000000000001001110000000000003301000010
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................21217.50350130000010000001220010000010200100010004000000000000000001000590000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCCC...................................................24117.00170010100000000000000000110000020600000012000000000000000000011000000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCCA...................................................24115.00150000000000000000000000000000100101012121000000000000000000000000200100000010001
.....................................................................................................TTTCACCTATCGTTCCATTTGCACTA.................................................26211.50230000100000001000000000000000000000100110000000000000000000000000032000300021115
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................22111.00110000000000000000000000000000000000001000000000000000000000001100011002010000012
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGCT.................................................26111.00110000000000000000000000001000000000043100000000000000000000000000010000000001000
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................23111.00110020100000000020000000000000100000000001000000000000000000004000000000000000000
............................................................................................................TATCGTTCCATTTGCAGT..................................................18210.50210000003000000000000010020011000000010141000000000000000000110010001100000001000
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................20110.00100020000000000010011000000000000100010001000000000000000000000000000011000000000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2119.0090030010000000000000000100000000000001000000000000000000000000000000000000010011
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2219.0090050000000000000000000000000000000100000000000000000000010000000000000001000010
.....................................................................................................TTTCACCTATCGTTCCATTTGCATA..................................................2519.0090000000000000010000000011001000100011000000000000000000000001000000000000000100
..................................................GTAAGTGGTGTAGATGAAACAAAT......................................................................................................2419.0090010000120000000000000000012000000110000000000000000000000000000000000000000000
..................................................GTAAGTGGTGTAGATGAA............................................................................................................1819.0090000000100000000000100003000020000000000000000000000000000002000000000000000000
........................................................................................................CACCTATCGTTCCATTTGCAGT..................................................2228.50170130000010000001010000100010000000000000000000000000000000000140000000101000010
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2318.0080111001000000000000000000000000000100201000000000000000000000000000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAAT................................................2718.0080000000000000000000000000001000000000000000000000000000000000000000100000000150
......................................................................................................TTCACCTATCGTTCCATTTGCAGAA.................................................2518.0080000000000000000000000000000000000000000000000000000000000000000030000000000221
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAC.................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000002221100000
.....................................................................................................TTTCACCTATCGTTCCATTGCA.....................................................2218.0080000000000000000010001000101200200000000000000000000000000000000000000000000000
..................................................GTAAGTGGTGTAGATGAAACAAA.......................................................................................................2318.0080000000000100100000000000000000000000000000000000000000000000000020100000010011
......................................................................................................TTCACCTATCGTTCCATTTGCAGTA.................................................2527.50150020000000001000000000001100000000010000000000000000000000000001011000000011040
.....................................................................................................TTTCACCTATCGTTCCATTTGCATTA.................................................2626.50130010002000001000000000010001000010000001000000000000000000010000010100000010100
....................................................................................................GTTTCACCTATCGTTCCATTTGCAG...................................................2516.0060030000000000000000000000000000000000000000000010000000000000000000000000000011
..................................................GTAAGTGGTGTAGATGAAACC.........................................................................................................2115.0050000010000100000100010000000000000000000000000000000000000000000000001000000000
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................2115.0050000000000000000110001000000000000001000000000000000000000001000000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTC......................................................2115.0050000000000000001000010000000100000000000000000000000000000001000100000000000000
......................................................................................................TTCACCTATCGTTCCATTTGCAGTC.................................................2525.00100040000000000000000000000000000000000001000000000000000000000000000000020300000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................2015.0050041000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CTGATACGCATCGGGCTCAAGGAGTACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTCACAACAAT-T-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGGTACGAGGATTTGGAGCTGTTCAAGGAACTCGAGCCGGCTGATCTGGACTASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................25220916.004183281820711087144335709704
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................2517483.0074831375874446
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2416724.0067248321246728174128151
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2212942.00294253814663779778539
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2312098.0020983833463575422270
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211834.0083464192434954
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................251525.0052510215210
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................211445.004451636901254813
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................251374.00374201822102986
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................242295.5059148129194976
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................201142.0014206021709
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................241133.0013310031290
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................241128.0012800001280
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................252117.0023438562093
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................231104.0010448254441
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................252103.0020611027191481
.....................................................................................................TTTCACCTATCGTTCCATTTGCACC..................................................25176.00760000751
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24161.0061232710181
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21141.00413302150
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................24140.00409042241
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22139.003919041231
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................26236.0072132104214
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................23234.50692111640
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................26234.50696642501
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20126.00261114631
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................19222.50451110411
.....................................................................................................TTTCACCTATCGTTCCATT........................................................19120.00207021100
............................................................................................................TATCGTTCCATTTGCAGT..................................................18218.50371203310
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAC..................................................25118.00180000180
.....................................................................................................TTTCACCTATCGTTCCATTTGCATC..................................................25113.00130010120
.......................................................................................................TCACCTATCGTTCCATTTGCAGC..................................................23112.00120000120
...........................................................................................................CTATCGTTCCATTTGCAG...................................................18111.0011600050
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20111.00111100000
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................19110.0010051112
..........................................................................................................CCTATCGTTCCATTTGCAGC..................................................2019.009000090
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2029.00180002151
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................2119.009007110
........................................................................................................CACCTATCGTTCCATTTGCAGT..................................................2228.00161000141
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................2128.00161111120
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................2518.008111230
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGGT.................................................2618.008000080
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................2318.008008000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................2017.007310120
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................2317.007002221
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2617.007110050
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2527.00141110110
...........................................................................................................CTATCGTTCCATTTGCAGC..................................................1926.00120000120
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2216.006012210
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2216.006300030
............................................................................................................TATCGTTCCATTTGCAGC..................................................1825.0010000190
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2115.005201110
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................2514.004000040
......................................................................................................TTCACCTATCGTTCCATTTGCAC...................................................2314.004000040
.....................................................................................................TTTCACCTATCGTTCCATTTGCTT...................................................2414.004000040
...................................................................................................TGTTTCACCTATCGTTCCATTTGCAGT..................................................2714.004000040
droGri2
TTGATGCGCATTGGCCTCAAGGAGTACACCTCGGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAAACTCTCAACAAT-T-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGATCTGGAACTGTTCAAGGAACTCGAGCCGGCCGATCTGGATTASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................241532.0053243498
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................231362.0036229765
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................252309.50619228391
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................221212.0021219616
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................23145.0045450
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................21136.0036297
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22128.0028280
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21114.0014140
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24210.0020164
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................21110.0010010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................2419.00936
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................2518.00862
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................2017.00770
.....................................................................................................TTTCACCTATCGTTCCATT........................................................1916.00660
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................1914.00440
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................2013.00303
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................2013.00330
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2113.00330
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2312.00202
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................2112.00220
...........................................................................................................CTATCGTTCCATTTGCAG...................................................1812.00220
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2212.00220
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................2412.00211
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2021.50321
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................2521.50312
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................2121.50321
....................................................................................................GTTTCACCTATCGTTCCATTTGC.....................................................2311.00110
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2211.00110
......................................................................................................TTCACCTATCGTTCCATTT.......................................................1911.00110
....................................................................................................GTTTCACCTATCGTTCCATTTGCAGT..................................................2611.00110
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2611.00101
.........................................................................................................ACCTATCGTTCCATTTGC.....................................................1811.00110
.........................................................................................................ACCTATCGTTCCATTTGCAT...................................................2011.00110
...................................................................................................TGTTTCACCTATCGTTCCATTTGC.....................................................2411.00110
....................................................................................................GTTTCACCTATCGTTCCATTTGCAG...................................................2511.00110
......................................................................................................TTCACCTATCGTTCCATT........................................................1811.00110
.....................................................................................................TTTCACCTATCGTTCCATTTGCATTG.................................................2620.50110
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................2520.50110
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................1920.50110
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2520.50110
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................2320.50110
droAna3
CTCATTCGCATCGGACTCAAGGAGTACACTTCCGTGTTCGTGCTTAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTATGAGGACCTGGAGCTTTTCAAGGAGCTGGAACCTGCTGATCTGGACTASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................2518235.00823514473906458611875938
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2416741.0067411184426719531184700
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2215784.0057847391296123672322922
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2312463.0024635165527544340837
...........................................................................................................CTATCGTTCCATTTGCAG...................................................1811859.001859185810000
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................2311028.0010289754201010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................2511024.001024119982418
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................201892.0089288930000
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................191802.0080279820011
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................211773.0077377210000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................221665.0066566040001
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................211456.00456176279139699
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................241322.0032222262221015
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211321.0032141018342244
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................241146.001467438171214
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................261128.00128997110110
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................241126.0012641163300
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................252102.502053678616663
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22193.009366303021
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21186.0086481012025
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................25174.00743661202
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24157.005791377219
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................20156.00560860735
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25136.00364512663
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20132.00323100001
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20130.00301220709
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................21126.00262600000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................25124.002410102101
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................25115.0015731040
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................22115.0015340107
.....................................................................................................TTTCACCTATCGTTCCATT........................................................19114.0014480200
......................................................................................................TTCACCTATCGTTCCATTT.......................................................19112.00121200000
......................................................................................................TTCACCTATCGTTCCATT........................................................18111.00111100000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................20111.0011810101
.......................................................................................................TCACCTATCGTTCCATTTG......................................................19111.00111100000
........................................................................................................CACCTATCGTTCCATTTGCA....................................................20110.00101000000
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................2319.009530001
..........................................................................................................CCTATCGTTCCATTTGCA....................................................1819.009900000
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................2319.009010512
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................2528.50172131001
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................1918.008260000
.........................................................................................................ACCTATCGTTCCATTTGCA....................................................1917.007600001
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2017.007210121
.........................................................................................................ACCTATCGTTCCATTTGC.....................................................1817.007500002
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................2117.007012004
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................2316.006010401
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................1916.006012012
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................2416.006060000
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................2315.005140000
............................................................................................................TATCGTTCCATTTGCAGT..................................................1815.005040100
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2215.005100202
..................................................GTAAGTGGTGTAGATGAA............................................................................................................1815.005100004
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2315.005030101
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................2615.005050000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2624.008080000
......................................................................................................TTCACCTATCGTTCCATTTGCAGTA.................................................2514.004030001
........................................................................................................CACCTATCGTTCCATTTGC.....................................................1914.004400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAT................................................2714.004220000
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................2014.004000022
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................2424.008420002
......................................................................................................TTCACCTATCGTTCCATTTGCAT...................................................2313.003300000
droBip1
CTCATTCGCATCGGACTCAAGGAGTACACTTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTTTTCAAGGAGCTGGAACCCGCTGATCTGGACTASizeHit CountTotal NormTotal
No Reads
droKik1
CTGATTCGCATTGGCCTCAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTGTTCAAGGAGCTGGAGCCCGCCGATCTCGATTASizeHit CountTotal NormTotal
No Reads
droFic1
CTGATCCGCATCGGCCTGAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTGTTCAAGGAGCTGGAGCCCGCCGACCTGGACTASizeHit CountTotal NormTotal
No Reads
droEle1
CTGATTCGCATCGGACTCAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTCGAACTCTTCAAGGAGCTGGAACCCGCCGACCTGGACTASizeHit CountTotal NormTotal
No Reads
droRho1
CTGATTCGCATCGGACTCAAGGAGTACACCTCCGTCTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTGTTCAAGGAACTGGAGCCCGCCGATCTGGACTASizeHit CountTotal NormTotal
No Reads
droBia1
CTCATTCGCATCGGACTCAAGGAGTACACCTCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTCTTCAAGGAACTGGAACCCGCCGACCTGGACTASizeHit CountTotal NormTotal
No Reads
droTak1
CTGATTCGCATCGGGCTCAAGGAGTACACCTCGGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAGCTCTTCAAGGAACTGGAACCCGCCGACCTGGACTASizeHit CountTotal NormTotal
No Reads
droEug1
CTGATCCGCATTGGACTCAAGGAGTACACATCCGTGTTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAACCCGCCGACCTGGACTASizeHit CountTotal NormTotal
No Reads
dm3
CTAATTCGCATTGGACTCAAGGAGTACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAA----TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCTGACCTGGATTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................252263670.505273410000367478201023110610510125221193000280000000164916194903724351437809295221599489967711863143813078983110000000000000000000000035535827828816471512415555228143892533512313257762021117830425310513329149052429711197934640915826412177231551425201122030108927618371956223891713474688225740431288295918972261290212420000023166148416499633553503612318621771851438535219802354690641520640435138128813118433289134112113128910622863134018201518764646211452295111209738967871279489360202361822739003900002351145921012661849112691189010911723117986844011951630571128430299114140530053143256312360981003024871174079777203471321269770014731749113414917808780381261137314443897804414277827037639101978243195601072212066413639361197291208611478145921154422101491746173014333798304018396649610110760
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................241184735.001847352000262363736801001405210633100250371227438860101251452386914426296163106401831021653323382661803500095120000000000000000010895909914381347285512542141492152156345530928121482492018216462511241534667848051462565262333572850000510719055592686612262265461379286221286187256311182000004801713154557818054423660450142851047398597000113021302603882283511026923154177010201803560131011531334404689619851381849239275413213640265427119010030226404616575131265704526021429611137004491655614910307113315211438018260518019239512229414343715999405256398117199101174786607106912736853165541475919668815070181894618124261883102940462425276029462691093811621622511421200
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................23157806.0057806000012132214103010013017223141013417122813141221718531829171175930175113436811110146180005140000000000000000040515435232062124220224231637224483801496830870035116206217731962251264701503818562082237422710110231102410323415169591389347491644350117540000012407405617350521415493451328974900964230284019069716313484400544869300000397000200013058284232974713161813156365416701447300300004550037293411407215105719211327114544101522451012311165001290011914732126146971548855497139450101718125218131120167911611546321212262480581271242785339033379215938811113895104091102993613813034104357410
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................22155176.00551760000253112313002000240916658201108113913973442541644743198610032336292848145121412200086100000000000000000065694457271634015068616582211038221026323606004726216411013324975356179130727797515366345023182081142104066132213106926277884680113516799840000010830085710240656118974331141610103571667780273031863986244300016182200000449100410000113328412161544191553653417001087130125320105000077630878393454535191609036444403368235840106104710222062265821023694152237285172016081701214212337268631532958146542131378511122152564842242724011705890303100412137020115949282559254781243100
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................21134796.0034796000010003834110050010179101302112487151228961105841311491721413221630003210000000000000000055671511414161233150145923124261356135253113089160177460134486193752278341110301090318200000000002534766821975357836874040351400000120236107234017452302051713122318711406151361224321001420100000101004660031502592942427949927466816223900030000533501091302401017113700161161262402371149087014477958214738844319463383821701333314226320216921824171151120682731714060516871666711525301662929540105732713211934837031191716243641147153020718513413316213353106720
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................21111713.001171300009000000010200300712173100001580713511441115131452413719122825392812400012100000000000000000107415200030000080510110034242000004210000211621250146311102910895013100000051026181414162491281661100000004100182259010810119815821205343780000048310371382009030000005100000000003461392837579915038935328453000030000101101482301015930108002261860012075040205119001264727325413979792428000543653163006612848171041557991714138378006318225510000179020517587723905000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................2518405.008405000040015003100000001350010000000009714101031519836202329313917120000000000000000000000011158410032200301612912005641001000072001076050432821321214000000004002656341016413140244020144715000000024005658029002717018226027200440686108230000162000000517001000000265027327208571343962004143821000420033200716303059092001811245006127803146424001084071144441066968842201055804749633560912301001725210224157331800228116200563031916352125197916113721183803110
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................2417319.007319000051000021000000004610002000000007103391203165015173120850000000000000000000000021020101031200000300011001020000100004002021010233041210000000010123071206219297200971820000000010012805007601050180000004013361312000426180100033100100000061000100139401911913310721900001100230030000010200000200030000000510031712412951010313179867336000007658101010425395111200004323455000000000100041324201100
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................2015004.0050040000000030000000000000000000100000570200022210011169320001000000000000000000044531401615301327105911007111600011152003121011000001000110000300000667324163861161592000005003002200700322221012900012201326000020020102200400041134181591381210121110130000000095052022036011100794714110180137130002118000106915671489764000118293547622831461611103309829106815715180194136741671701518794773250425519237373325192429204700
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................2622874.50574900000000000000000000222000000000000587351989276818455500000000000000000000000100002212500000001020000030000020000002000000000000010000001000330671124293324161522128281300000300000110200010102140000000296171010111000100620001000000615002811434952278892222480000110082020000000020002110008000000414100125495141553172943102538001101112545110004165184906100010539751811001108020072123214201000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................2512688.0026880000001000020000000012100000000000033354395105951371231300063100000000000000000231000000100000001000000000000000001000021010021000410000000020013106153237751315171912000000002003404004201020600000071446000011300000270010000001726001144624461423886920001100013101200106200100373100800012081110023250461663525934136000021714121251504224507734316452100531825153000326290600183315961002100
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................2422402.004804000000000000001000000140001000000005343422842676128106500000000000000000000000224400060000010203501004310100002101010002200020801125000002101011322151123414447348142460000000012037130100047091404000010832170000008000001790011000101428372571062744219741811560000000030170010210210120013103201350540101339300271893922943244401790004781411178289961040922899884816012581351566050222010920245524958134634198700006
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................2311505.00150500000010000000000000110000112118270001410003101000414200001110000000000000000023200000010000000210100001200000000000000621200030214400000000000440503431501013000000200000719020011431119230110000001825040000003000002100000000005125251121356264962000000002200100100000000340100200000046200251531713324140188000002510586111001025213113000053514800000440101522341400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................2411389.00138900000000000100000000201000100000000001400810020233101000000000000000000000000101001000000000100000002300000000101000000100000015500000000000513180144210605000000000000120400610000020000009180100000200000004000000000130139511519743330570001000021010000000000003100002000000221004415534138302662287000102223113110117179111300001029700000020000102100100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................2511273.00127300000010000020000000001000000000000010001010023060204000000000000000000000000000000000000000000000000000000000000000000002000000300000000000270102410621500000000000034010012020121194000307110200010010000003000000000210061114553600000000250120010010000011100010000003300072126745081235635910128172226419111304191927163328300232520022201401300600001000010
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................2521232.0024640000000000000000000038700120000000062662151157414319551313162512230000000000000000000000063420233212000130012000010200010000000010410100010100192000000000025749114681218390311261115162100000215910172305000201000000040011181900000430000082550010001000200572331245835310001000010601302103400000577525011702000071320016521760713417101001153333212522121615222642632007271700001550210104310200000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................2411209.0012090000000000001000000003100040000000016202012021470536230000000000000000000000013020010000000910010100000000000010000415010000212535410000000000001112402582415001010000010000049080022000303000000552660000120000001314000000000130027286103119283100001000420011000040210051425024000010613100128322821314810820000071571152210058754192100535200000880201301541400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................251826.00826000000000000000000000020000000000001140100000101110000000000000000000000000000010000000000000000000000000000000000000000000000000000000000065207350104401040000000000000000000000010100000013602000001100000170000000000010610401516182800000000000000000000000000000000000000000032126301173519823300000011100000214250000001137000001200020001202000000
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................201757.007570000000000000000000001110001004810830100010001200000000000010000000000000000003002002000000000010100000000000000000001430200010522610470000000000011000000000000000000016320721198040150465000002701000000000000101100000000002013183131348203420000000001000200000150300001100000000002410040111704000001510122521110111111100001000000000000001400101300000
.....................................................................................................TTTCACCTATCGTTCCATT........................................................191579.0057900000000000000000000040000005401102020000000010020000000000000000000000000000000000000000000000000000300000000000000100000000211110447770000030100002010000000000000000024035011405100900000130200000100000011000000000001400782156377063013001000002100100000000000110000000001005200020022360000000031000000000000000000000000000000000000000000
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................221569.005690000000100000000000001120000000000000120131000002001000000000000000000000000011100001000100100111001170000010000000031010103040810000020000301001130041060000000000008110810101201502041000001402120000010000001100000000002008133353490000000012015100011000002002000010010372004523406548300000018239270410000702130100820200000320000300011100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................252478.0095600000000000000000000001000000000002000100300001162603000000000000000000000001012000001000000000000001000000000000010000000000100100000000000545211072234410700000000000110000000000000000000103100010100000031000000001070049265213321384500000000340300000000010012110200401000033000196115801785226900001412715122021245124216100084319000008100300120222402000
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................191446.00446000000000000000000000000000000000011000001001000000100000000000000000000000002010020000021010033120010000000000010000000000000000000000000000110100040012030000000800000000000100000000001000000000000010000000210000011050102011000000000100010000100100050100040030005300006050406000104762262033102741931536008167110020360200220416323031500000
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................211395.0039500001020000000000000001000001000000000000010000000110000001000000000000000001200000000010000021000000100000000100000740301312150810001000000111000000030000000000000001320018002116221160110000003400000000003000000000000000003006130371815000000000100210003301100112100100000010000040007300000081118210200000000010100210100000000000300001000000
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................181371.003710000000000000000000000000005164002100011000200010132201000000000000000000000001001000000005000010000000000000000000000405300000018845013150000010000001010010000000000000023044500401610050000020100000000000000000000000002521000200000000000010011010000001000000000000000211005103237630001202212111004040110200001100000000000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................221329.003290000100000000000000000100000000000010000001001001200000000000000000000000000000030000000000400100000020000000000000011000526050101200000000000010000012000000000000200086010003607010070000001700000000000000001000000000000003513301400000000000000000120010000130000000000100002003461100000248152302020110011410000020000001000003700000100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................231309.003090000000000000000000000000000000000000110003000032311000000000000000000000000000000001000000000100000000000000000000232100100010180282200000000000120000100100100000000000057040000000000000000000000000000000000000000000000000100011000000000010013000004000007410000000000030002221152370900000030151010002030141000100000000000000000000000000
..................................................GTAAGTGGTGTAGATGAAACAAATT.....................................................................................................251229.002290000000000000000000010000000000000030001001402305000000000000000000000000000000001010300000000000000000000000000006000000000000000000000000031800503202042000000000000000000000000000000000104000000220100040000000003024605312200000000000100000000001000000000000000000000000000000000000070000124350200002171000010200310008142216301000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................261200.002000000000000000000000000000000000000000100000000000200000000000000000000000000120000000000000000000000000000000000000010000000000010000000000000000000001000000000000003301001100010100000000000000000000000000000000001000152437251626390000010000000000000000000000000000000000000512010030000000000000001001000000000000000000000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................251198.001980000000000000000000000000000000000000000012000001110100000000000000000000000000000001000000000000000100000000000000000000000010000000000000022000110000000000000000000000000000000000000000001000000000000000000000000101661855890000010000000000000000000000002000000100003215138354200000010000100002011060000310000000010000001000000000
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................212188.50377000000000000000000000000001000000001000000200101001000000000000000000000000010200000000000000000000000000100000000000000000000000000000000000000121413021000000002106030012004000001000000120030000000000010000000000231268027254020000000100000000000000000000100000010000121041137163210000052061520001220020100122000002133000127213121100000
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................221173.001730000000010000000000000000000000000100000000010000001000000000000000000000000000000002100000000000000000000000000000000000000000010000101000000000210001000000000000301000000000000210000000000000001000000100000000001001002101220000200001000001000000001000000100000100001901160200000010229112201032502010041292000101300200311000400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................231166.0016600001000000000000000000000000000000000000000010120000000000000000000000000000000000000000004001000000100001000000000500200000208100000000000030110001000000000000000078050030000000000000100000000000000000200000000003001201200800000000000050010010100001100000000000300016164161800000230112000001100001000101000000210000401000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................221164.0016400002000000000000000000000000000000000000100000002200000000000000000000000000000000000000000000000000100000000000000100101230013200000000000000000000000000000000000065030044021110900000038000000000000000000000000000000021302024000000000000000000701000101000000100000000020107110000052320001012000000000000000000000000500000100000
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................201142.0014200000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000010000000000000000001001000000000000000000001000010010200000000000000000000000000000000000002420122200000000000000000000000000000010000000100018712828140000001000000000000000000000000000000000000000000000
..................................................GTAAGTGGTGTAGATGAAACC.........................................................................................................211132.0013200000000000000000000000000000000000000000300000000100000000000000000000000000000000010000000000000000000000000000000000000000100000000000000010000200000120000000000010010000000000000000000000000000000000000000000010000000000000000000000000000000001030110010000001100012200101000010001144000092928271100110400100330500101000200000
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................192117.0023400000000000000000000100000000000000010000200000000100000000000000000000000000131000000000000000000000000000000000000100000000000000000000001210009161200010000000000000000000020000000020003000000000000000200000000002349101000011000000000000000000000001100001000011020004289206193240000110100001002021010000223000000420100210300000000
..................................................GTAAGTGGTGTAGATGAA............................................................................................................181116.001160000000000000000000000000000000000000001000000000000000000000000000000000000001000300000000011300000090000000110003000000000000000000000000000000100000000000000000000300000110001100000100000000001000000000000002000003100100000000000000000000000002001020000000000310000000000100001241210310001302251100113110000100400710000600000
............................................................................................................TATCGTTCCATTTGCAGT..................................................182116.00232000000000000000000003500000000000000100000000100000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000001100151314000000000000000000000000000100000000420000001000000010000000000585600000000000000000100000000000000000000000101052200520111961410430000000102110011001022001232000000110101020010100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAT................................................272115.5023100000000000000000000000000000000000000000110000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000224000010002200000000000000000000000000000000001000000000000000100000000000001692523141618000021000000000000000000000000000000000000852124184260000000013100005213010000402000000100000110001000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCCT...................................................241115.00115000000000000000000000000000000000000001111000000010000000000000000000000000000000000000000000000000000000000000000002000000109021700000000000000000000000000000000000023030000000000000000000000000000000000000000000000001000000000000000100100000000000011000000000000200001905120050000000001100010100000000000000000000000000000001000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................252107.50215000010000002000000000000000000000001000000000020112000000000000000000000000021000010000000000000000210000000000000000100000100000000000000000100022100100000000100000010100110000000000001010200001000000012000000000170133227128000000000000100000000000011000200000012000410493951100000001132000052041600000451000001470170402140100000
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................241107.001070000000000000000000000200000000000001000001001001000000000000000000000000000000000000000000100000001240000000000000010000000000200000000000000000000000040000000000000102002111000000000010100000000000000010000000000100710031220000000010000000000000000000002000000210000101028180000010010000000312020000422000000020000000000200000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................26293.5018700000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000120003210100340000000010001000000010000000000001000000010000003000000000005004412781000006400100000000000000010000000000000100029210710880000001305200000026030000145200000730000410501400000
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................20293.001860000000000000000000001000000000000000000000000102000000000000000000000000000010000000000000003000000000000000000000000000000000100000000000000001201130000000002000000000000100010000000000000000000000000000000000000001101011130000000012000000000000000000000000000010001053218218480000121023300000000030100212000000320101601000200000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................21190.009000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000700010000001200000000000200000000000000000000000000000000100000000000000100000000000000000000000000000000073318212350000010000000000000000000000000000000000010000000000
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................23288.00176000001000000000000000100000000000000000101000010210100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230020000000000000009100100000000000000000010000000000000010000000000341010120669100000000011000000000000000020002000000010007203618650001000002300001213010000122000001340100100100200000
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................19187.00870000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000100000100000002200000000300000000000000000000000010000000000000000000000000000000000000000000009421903030000010100000000000000000000000000000000000000000000
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................20182.0082000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000070000000100000000003000000000000000000000000000000000100000000000000000010100020000000000001000000000000000000000000000000000012613120000000201100000412140000270010010640200100021301000
........................................................................................................CACCTATCGTTCCATTTGCAGT..................................................22282.0016400000000000000000000000000100000001000000000010010001000000000000000000000001000000000000000000000000000000100000000000000000000000000000000000011000200010000000000000000100001010000000000000000000000000300000000012000000201000000000000000000000000000000000000102210066226313490000111101300001201011000020000000320000500001200000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATG..................................................25182.008200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000019362311100000200000400000113000000000000000000000000000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................23180.00800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000011001000000100000000000000100000000000000000000005503003101010200000080000000000000000000000000000000111000000000000000000000010000000000000000000010000316014120000013140000000000000000001000000000000200000000000
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................21180.0080000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000001211212000000000000200010000000000000000000120200000000000000000000000000000000000000000000000001000100000000000006000001600000600000000000000000000000010000021130000020000000000000000000000000200000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAAA.................................................26174.00740000000000000000000001000000000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000201000000000000000000000000000000000000000000000000000000000000000000201024130000000000001000000000000000000000000000003818819120000000002000000000000000000000000000000000000000000
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20164.0064000000000000000000000100000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000002100001101010000000000000000001000000000000000000170100360101010000003010000010000000000000000000000033013101000000000000100000100000000000000100001100010100000000000410000000000000000000000000100000200000000000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................22162.00620000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000002000001200000010000030000000000000000010000000000000450100410000000000000000000000000000000000000000005141224410000010000000000000000000000100000000000000000000000
droSim2
CTGATTCGCATCGGACTCAAGGAGTACACATCCGTATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCTGACCTGGATTASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................21124873.0024873218644411285366732712853071666238732000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................24124480.002448013456466726221964840484380943266489253136103001
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................25214363.0028726476295281620086418086580725701000123011085002
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................22113520.00135205396105297862541418592356175061569529127000
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................23111590.0011590128413771811830303556300813231241043453000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................2512740.00274015181800122297421913955393416000
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................2111131.00113192116295104091110677207380013
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................241974.0097411024002472202681403417166000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................262667.50133500050046638230315912611000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................251576.005764405103226577481615101800000
.....................................................................................................TTTCACCTATCGTTCCATT........................................................191468.004686821103632840568000000
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................181420.0042060003036451428000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................241300.00300421181005231117294311000
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................201286.0028630216000413984203221001
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................201164.0016420032209351642404000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................251152.00152451720001214114200000
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................231148.0014811141215242837214000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................251120.00120000400283235153120000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................252103.00206725200615054183211000
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24290.0018060090043503012101532000
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22190.009000032815361573100000
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21167.006711007011419752100000
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20166.0066580010114100000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24152.0052101100791674105000
..................................................GTAAGTGGTGTAGATGAAACAAATT.....................................................................................................25137.0037000000110034010000
.............................................................................................................ATCGTTCCATTTGCAGT..................................................17237.0074000000100073000000
............................................................................................................TATCGTTCCATTTGCAGT..................................................18234.5069001000000068000000
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................22132.0032262000000110200000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25230.506110000013111842633000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................25130.00300000001510311000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................26130.003000100058640051000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAAA.................................................26126.002600000058812011000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGCA.................................................26126.002600000094940000000
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................22122.002250100025430101000
............................................................................................................TATCGTTCCATTTGCAG...................................................17118.0018000000002016000000
.............................................................................................................ATCGTTCCATTTGCAG...................................................16118.0018000000101016000000
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................19117.001700000632002400000
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................23116.001660100034011000000
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................19116.001620220101008000000
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................24115.001500000056201001000
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................20215.0030607000022013000000
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................23115.001500000032610021000
......................................................................................................TTCACCTATCGTTCCATT........................................................18114.0014000031100000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGG.....................................................22113.0013121000000000000000
..................................................GTAAGTGGTGTAGATGAA............................................................................................................18113.001300000511104000100
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTAT................................................27213.0026000000451070000000
...........................................................................................................CTATCGTTCCATTTGCAG...................................................18111.001140010001023000000
..................................................GTAAGTGGTGTAGATGAAACAAATTT....................................................................................................26111.001100000000008030000
.....................................................................................................TTTCACCTATCGTTCC...........................................................16211.0022000000110416000000
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................22111.001100000201215000000
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................19210.0020300000100016000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAC.................................................26110.001021210021001000000
........................................................GGTGTAGATGAAACA.........................................................................................................15110.0010000000000010000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2529.501900100011824110000
............................................................................................................TATCGTTCCATTTGCA....................................................1619.00900000010107000000
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................2419.00900102600000000000
..................................................GTAAGTGGTGTAGATGAAACG.........................................................................................................2119.00900900000000000000
......................................................................................................TTCACCTATCGTTCCATTTGCAGTA.................................................2527.501500000050910000000
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................2017.00710000100005000000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2217.00700120011101000000
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................2127.0014000000120010100000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2117.00720010001201000000
.....................................................................................................TTTCACCTATCGTTCCA..........................................................1717.00700000013011010000
........................................................................................................CACCTATCGTTCCATTTGC.....................................................1917.00730200000200000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................2316.00600000012200100000
........................................................GGTGTAGATGAAACAAATT.....................................................................................................1916.00600000000006000000
.....................................................................................................TTTCACCTATCGTTCCATTTA......................................................2116.00620100001010001000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGCT.................................................2616.00600000130110000000
.....................................................................................................TTTCACCTATCGTTCCATTGCA.....................................................2225.001000000019000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATA..................................................2515.00500000013001000000
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................2015.00520200010000000000
........................................................................................................CACCTATCGTTCCATTTGCA....................................................2015.00500010021010000000
.........................................................................................................ACCTATCGTTCCATTTGC.....................................................1815.00530000010001000000
.......................................................................................................TCACCTATCGTTCCATTTG......................................................1915.00511200000001000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................2314.00410000010110000000
........................................................................................................CACCTATCGTTCCATTTGCAGT..................................................2224.00800000013202000000
.....................................................................................................TTTCACCTATCGTTCCATTG.......................................................2014.00431000000000000000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................2014.00400000102001000000
............................................................................................................TATCGTTCCATTTGCAA...................................................1714.00400000000112000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATTA.................................................2623.50700000012130000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................2623.50700000031300000000
droSec2
CTGATTCGCATCGGACTCAAGGAGTACACATCCGTATTCGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCTGACCTGGATTASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................2525243.501048795870968871933
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2213087.003087333542912409
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2413086.0030868852858241092
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2312116.0021162991541391524
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211637.00637674377180
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................251456.004566641170179
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................211421.004211101028273
...........................................................................................................CTATCGTTCCATTTGCAG...................................................181204.00204204000
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................231192.001921702911
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................251184.00184121112140
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................19196.009696000
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................20192.00923125819
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................20191.009191000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................22184.008484000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................21182.008282000
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24275.001504377525
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22137.0037232012
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20135.0035101123
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................24132.0032132413
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21132.0032200111
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24118.00186237
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................24115.00154245
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................25214.002842139
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................26213.502791116
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25211.502372131
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................19111.00110263
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................2518.0082141
......................................................................................................TTCACCTATCGTTCCATTTG......................................................2018.0086002
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................2418.0084022
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................2018.0081025
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2217.0070007
..........................................................................................................CCTATCGTTCCATTTGCA....................................................1815.0055000
.....................................................................................................TTTCACCTATCGTTCCATT........................................................1915.0052003
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2614.0042002
.....................................................................................................TTTCACCTATCGTTCCATTGC......................................................2114.0041012
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................2314.0041003
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................2114.0044000
.....................................................................................................TTTCACCTATCGTTCCATTTCAG....................................................2314.0043010
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................1813.0030021
.......................................................................................................TCACCTATCGTTCCATTTG......................................................1913.0033000
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2023.0061212
..................................................GTAAGTGGTGTAGATGAAACC.........................................................................................................2113.0030021
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................2013.0032001
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................2213.0031002
.....................................................................................................TTTCACCTATCGTTCCATTTGCATA..................................................2513.0030012
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................2513.0031011
....................................................................................................GTTTCACCTATCGTTCCATTTGCAGT..................................................2613.0033000
.....................................................................................................TTTCACCTATCGTTCCATTTC......................................................2113.0031002
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................2122.5051112
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................2412.0021010
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................2312.0022000
..................................................GTAAGTGGTGTAGATGAA............................................................................................................1812.0021001
.........................................................................................................ACCTATCGTTCCATTTGC.....................................................1812.0022000
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2312.0020002
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................2622.0040022
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................2212.0020011
............................................................................................................TATCGTTCCATTTGCAGT..................................................1821.5031110
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................1921.5031020
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2521.5031020
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................2321.5032010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGGC.................................................2611.0011000
...................................................TAAGTGGTGTAGATGAAAC..........................................................................................................1911.0010001
......................................................................................................TTCACCTATCGTTCCATTT.......................................................1911.0010001
......................................................................................................TTCACCTATCGTTCCATTTGCAGAA.................................................2511.0011000
........................................................................................................CACCTATCGTTCCATTTGCAT...................................................2111.0011000
.....................................................................................................TTTCACCTATCGTTCCATTTGCTT...................................................2411.0011000
...................................................TAAGTGGTGTAGATGAAACT.........................................................................................................2011.0010001
......................................................................................................TTCACCTATCGTTCCATT........................................................1811.0011000
.......................................................................................................TCACCTATCGTTCCATTTGCAC...................................................2211.0011000
.....................................................................................................TTTCACCTATCGTTCCATTTGCTAA..................................................2511.0011000
droYak3
CTGATTCGCATCGGACTCAAGGAGTACACGTCCGTGTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATATTTTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTGGAACTGTTCAAGGAACTGGAGCCCGCCGACCTGGATTASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................2115497.0054974999109149878126271000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................2525493.501098720597755111544666979992003110
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2214875.00487515142991611307415700280010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2414145.0041454758951638164366513910030
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................2511463.001463240141765920000
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2311385.001385502919652342514370030
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211444.00444718190147115110010
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................201150.0015024084332520000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................251148.0014812053172124120000
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................23194.00945622121300000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................25192.00921307610010001
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24274.5014905562831290000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24155.005503130161940000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................24151.0051823810200000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................24149.00491182331210000
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21146.00468231301100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25236.007201155113730000
.....................................................................................................TTTCACCTATCGTTCCATT........................................................19132.0032176402300000
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20132.0032864021200000
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22123.0023116012300000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................26219.00380111861020000
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................23118.0018001041300000
......................................................................................................TTCACCTATCGTTCCATTTG......................................................20115.0015105000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................23113.001300224500000
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................24111.0011001100000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................25210.0020011412200000
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................2218.00811411000000
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2217.00722003000000
...........................................................................................................CTATCGTTCCATTTGCAGT..................................................1927.001414621000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................2317.00720201110000
...........................................................................................................CTATCGTTCCATTTGCAG...................................................1816.00614100000000
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................2116.00602200200000
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................2116.00610001400000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................2215.00514000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAT..................................................2524.50904023000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2614.00401300000000
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................2414.00402200000000
.......................................................................................................TCACCTATCGTTCCATTTGCAGT..................................................2324.00802500100000
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................1914.00400120010000
........................................................................................................CACCTATCGTTCCATTTGCAGT..................................................2223.50701401100000
.....................................................................................................TTTCACCTATCGTTCCATTTGG.....................................................2213.00321000000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATA..................................................2513.00301100100000
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................1913.00311100000000
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................1813.00330000000000
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2023.00621201000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................2513.00301200000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCATG..................................................2513.00300200100000
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................2013.00302010000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................2622.50500500000000
........................................................................................................CACCTATCGTTCCATTTGCAGC..................................................2212.00200200000000
.........................................................................................................ACCTATCGTTCCATTTGC.....................................................1812.00201100000000
....................................................................................................GTTTCACCTATCGTTCCATTTGCAG...................................................2512.00202000000000
.........................................................................................................ACCTATCGTTCCATTTGCAGT..................................................2122.00401101100000
.....................................................................................................TTTCACCTATCGTTCCATTTGCCA...................................................2412.00200000200000
.....................................................................................................TTTCACCTATCGTTCCATTTGTT....................................................2312.00200100100000
......................................................................................................TTCACCTATCGTTCCATTTGCAA...................................................2312.00201100000000
..........................................................................................................CCTATCGTTCCATTTGCAGC..................................................2012.00200200000000
droEre2
CTGATTCGCATCGGACTGAAGGAGTACACCTCCGTCTTTGTGCTCAACGGGTAAGTGGTGTAGATGAAACAAATTTACCAACAATAT-TTTTGTTGGATTGTTTCACCTATCGTTCCATTTGCAGCTACGAGGACCTCGAGCTGTTCAAGGAACTGGAGCCCGCCGACCTGGATTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................TTTCACCTATCGTTCCATTTGC.....................................................2217866.00786654444067530410457990
.....................................................................................................TTTCACCTATCGTTCCATTTGCAG...................................................2414463.0044631077448343134557186044
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGT..................................................2523093.506187846139318357910821990114
.....................................................................................................TTTCACCTATCGTTCCATTTGCA....................................................2312700.002700430412394123417150
.....................................................................................................TTTCACCTATCGTTCCATTTG......................................................211512.0051214119319222900
..................................................GTAAGTGGTGTAGATGAAACA.........................................................................................................211466.00466711487642930
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGA..................................................251310.0031044246303215816
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGC..................................................251305.003052264674220
......................................................................................................TTCACCTATCGTTCCATTTGCAG...................................................231162.001621375214130
...........................................................................................................CTATCGTTCCATTTGCAG...................................................181107.00107106001000
..................................................GTAAGTGGTGTAGATGAAAC..........................................................................................................20185.00852411711500
.........................................................................................................ACCTATCGTTCCATTTGCAG...................................................20163.006363000000
.......................................................................................................TCACCTATCGTTCCATTTGCAG...................................................22160.006058000020
..........................................................................................................CCTATCGTTCCATTTGCAG...................................................19159.005958000010
......................................................................................................TTCACCTATCGTTCCATTTGC.....................................................21156.0056220412270
........................................................................................................CACCTATCGTTCCATTTGCAG...................................................21155.005554000010
......................................................................................................TTCACCTATCGTTCCATTTGCAGT..................................................24252.00104421511012240
.....................................................................................................TTTCACCTATCGTTCCATTTGCAA...................................................24147.0047231013190
......................................................................................................TTCACCTATCGTTCCATTTGCA....................................................22139.0039112311210
.....................................................................................................TTTCACCTATCGTTCCATTT.......................................................20139.003990002271
.....................................................................................................TTTCACCTATCGTTCCATTTGCAT...................................................24129.00294187180
.....................................................................................................TTTCACCTATCGTTCCATTTGCC....................................................23129.002902400230
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGG..................................................25127.002711900061
.....................................................................................................TTTCACCTATCGTTCCATTTGCAC...................................................24126.002631821110
.....................................................................................................TTTCACCTATCGTTCCATTTGA.....................................................22125.002500020230
..................................................GTAAGTGGTGTAGATGAAA...........................................................................................................19123.002300032180
.....................................................................................................TTTCACCTATCGTTCCATTTGCT....................................................23123.002310002200
.....................................................................................................TTTCACCTATCGTTCCATTTGCATT..................................................25219.003880619140
...........................................................................TACCAACAATAT-TTTTGTTGGATTGT..........................................................................26116.001600000016
.....................................................................................................TTTCACCTATCGTTCCATTTGCG....................................................23116.001610000150
..................................................GTAAGTGGTGTAGATGAA............................................................................................................18111.00110010280
...................................................TAAGTGGTGTAGATGAAACA.........................................................................................................20110.00100002260
.....................................................................................................TTTCACCTATCGTTCCATT........................................................1919.0092310030
.....................................................................................................TTTCACCTATCGTTCCATTTGCACT..................................................2527.00141505030
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGAA.................................................2616.0063001020
..................................................GTAAGTGGTGTAGATGAAACAA........................................................................................................2216.0060001140
......................................................................................................TTCACCTATCGTTCCATTTGCAGC..................................................2416.0060600000
.....................................................................................................TTTCACCTATCGTTCCATTTGT.....................................................2216.0060012030
......................................................................................................TTCACCTATCGTTCCATTTGCAGA..................................................2416.0063101010
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTA.................................................2626.00126100140
......................................................................................................TTCACCTATCGTTCCATTTG......................................................2016.0065000010
.....................................................................................................TTTCACCTATCGTTCCATTTC......................................................2115.0050000050
.....................................................................................................TTTCACCTATCGTTCCATTTT......................................................2115.0053000020
.......................................................................................................TCACCTATCGTTCCATTTGCA....................................................2114.0044000000
.......................................................................................................TCACCTATCGTTCCATTTGC.....................................................2014.0040000040
.....................................................................................................TTTCACCTATCGTTCCATTTGCAAA..................................................2514.0043000010
.....................................................................................................TTTCACCTATCGTTCCATTGC......................................................2114.0040000040
..........................................................................................................CCTATCGTTCCATTTGCAGT..................................................2023.5072000140
.....................................................................................................TTTCACCTATCGTTCCATTTGCATA..................................................2513.0030012000
.....................................................................................................TTTCACCTATCGTTCCATTTA......................................................2113.0032000010
....................................................................................................GTTTCACCTATCGTTCCATTTGCA....................................................2413.0033000000
.....................................................................................................TTTCACCTATCGTTCCATTTGCAGTC.................................................2622.5050102200
......................................................................................................TTCACCTATCGTTCCATTT.......................................................1912.0022000000
.......................................................................................................TCACCTATCGTTCCATTTGCAGA..................................................2312.0020001010
........................................................................................................CACCTATCGTTCCATTTGC.....................................................1912.0020100010
.....................................................................................................TTTCACCTATCGTTCCATTTGG.....................................................2212.0020000020
..................................................GTAAGTGGTGTAGATGAAACAAATT.....................................................................................................2512.0021000100
...................................................TAAGTGGTGTAGATGAAAC..........................................................................................................1912.0020000110
..................................................GTAAGTGGTGTAGATGAAACAT........................................................................................................2212.0020000020
.....................................................................................................TTTCACCTATCGTTCCATTTGCACA..................................................2512.0020011000
.....................................................................................................TTTCACCTATCGTTCCAT.........................................................1812.0020000110
.....................................................................................................TTTCACCTATCGTTCCATTTCAG....................................................2312.0021000010
.....................................................................................................TTTCACCTATCGTTCCATTGCA.....................................................2231.6751010120
............................................................................................................TATCGTTCCATTTGCAGT..................................................1821.5031000020

Generated: 10/20/2015 at 11:01 PM