dpe_237

CTATACATAAATTATTACTCTTTTGTTTAACATATCGCAATTATGTTTGCTTACCAAAACCATTGAAGCCACCAGAATCTTCAATAGTTGTCAATGGCGATCTAGGCCTTTTTACGGTTTCCCGGGTAGACTTAGATTGTACTATATTTTGCAAATTTT *********************************...........(((((......(((.(((((((..........))))))).)))......)))))...(((((.......)))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V042 embryo	V111 male body	V057 head
....................................................................................TAGTTGTCAATGGCGATCTAGGCC...................................................	24	0	3	28.33	85	73	6	5	1	0
....................................................................................TAGTTGTCAATGGCGATCTAGGC....................................................	23	0	3	14.00	42	40	0	2	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCCT..................................................	25	0	3	11.67	35	31	4	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCCTT.................................................	26	0	3	6.00	18	13	5	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGG.....................................................	22	0	3	5.33	16	14	0	1	1	0
.....................................................................................AGTTGTCAATGGCGATCTAGGCC...................................................	23	0	3	2.67	8	8	0	0	0	0
.............................................................................TCTTCAATAGTTGTCAATGGCGATC.........................................................	25	0	3	2.67	8	8	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCAGAA..................................................................................	27	0	4	1.75	7	6	1	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGC....................................................	23	1	3	1.33	4	4	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCAG....................................................................................	25	0	4	1.00	4	4	0	0	0	0
...............................................TGCTTACCAAAACCATTGAAGCCACCA.....................................................................................	27	0	4	1.00	4	4	0	0	0	0
.....................................................................................................................TTTCCCGGGTAAATTTAGATTGTACTA...............	27	2	1	1.00	1	1	0	0	0	0
....................................................................................................TCTAGGCCTTTTTACGGTTTCCCGGGC................................	27	1	2	1.00	2	0	2	0	0	0
.......................................................................................................................TCCCGGGTAAATTTAGATTGTA..................	22	2	1	1.00	1	1	0	0	0	0
...................................................TACCAAAACCATTGAAGCCACCAGAA..................................................................................	26	0	4	0.75	3	3	0	0	0	0
.....................................................................................AGTTGTCAATGGCGATCTAGG.....................................................	21	0	3	0.67	2	2	0	0	0	0
................................................................................TCAATAGTTGTCAATGGCGATCTAGGC....................................................	27	0	3	0.67	2	2	0	0	0	0
....................................................................................TAGTTGTCTATGGCGATCTAGGC....................................................	23	1	3	0.67	2	2	0	0	0	0
.....................................................................................AGTTGTCAATGGCGATCTAGGC....................................................	22	0	3	0.67	2	2	0	0	0	0
.........................................................................................GTCAATGGCGATCTAGGCC...................................................	19	0	3	0.67	2	0	2	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCA.....................................................................................	24	0	4	0.50	2	2	0	0	0	0
................................................................................................................TACGGTTTCCCGGGTAAATTTAGAT......................	25	2	2	0.50	1	0	0	0	1	0
....................................................................................................................................TAGATTGTACTATATTTTGCAC.....	22	1	2	0.50	1	1	0	0	0	0
................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT......................	25	0	2	0.50	1	0	1	0	0	0
...............................................TGCTTACCAAAACCATTGAAGCCAC.......................................................................................	25	0	4	0.50	2	2	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGCCC...................................................	24	1	3	0.33	1	1	0	0	0	0
.....................................................................................CTTTGTCAATGGCGATCTAGGCC...................................................	23	2	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCCC..................................................	25	1	3	0.33	1	1	0	0	0	0
.............................................................................TCTTCAATAGTTGTCAATG...............................................................	19	0	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCA...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGACGATCTAGGCCT..................................................	25	1	3	0.33	1	0	1	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGCC...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCT...................................................	24	1	3	0.33	1	0	0	1	0	0
................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC...................................................	28	0	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCTATGGCGATCTAGGCCT..................................................	25	1	3	0.33	1	1	0	0	0	0
.................................................................................CAATAGTTGTCAATGGCGATCTAGGC....................................................	26	0	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGCCT..................................................	25	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCTA..................................................	25	2	3	0.33	1	0	1	0	0	0
....................................................................................TAGTTGTCGATGGCGATCTAGGCTTTT................................................	27	2	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGT....................................................	23	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCAATGGCGATCTAGGCG...................................................	24	1	3	0.33	1	1	0	0	0	0
....................................................................................TAGTTGTCCATGGCGATCTAGGCC...................................................	24	1	3	0.33	1	1	0	0	0	0
...............................................................................TTCAATAGTTGTCAATGGCGATCTAGGCC...................................................	29	0	3	0.33	1	1	0	0	0	0
.............................................................................GCTTCAATAGTTGTCAATGGCGATC.........................................................	25	1	3	0.33	1	1	0	0	0	0
......................TTGTTTAACATATCGCAATTATGTT................................................................................................................	25	0	4	0.25	1	1	0	0	0	0
...........................................TGTTTGCTTACCAAAACCATTGAAG...........................................................................................	25	0	4	0.25	1	1	0	0	0	0
..................................................TTACCAAAACCATTGAAGCCACCAGAAA.................................................................................	28	1	4	0.25	1	1	0	0	0	0
...........................TAACATATCGCAATTATGTTTGCT............................................................................................................	24	0	4	0.25	1	1	0	0	0	0
...................................................TACCAAAACCATTGAAGCCACCAG....................................................................................	24	0	4	0.25	1	1	0	0	0	0
...............................................TGCTTACCTAAACCATTGAAGCCACC......................................................................................	26	1	4	0.25	1	1	0	0	0	0
......................TTGTTTAACATATCGCAATTATGT.................................................................................................................	24	0	4	0.25	1	1	0	0	0	0
...............................................TGCTTACCGAAACCATTGAAGCCACC......................................................................................	26	1	4	0.25	1	1	0	0	0	0
...............................................TGCTTACCGAAACCATTGAAGCCACCA.....................................................................................	27	1	4	0.25	1	1	0	0	0	0
............................................................................................AAAGGCGATCGAGGCATTTT...............................................	20	3	15	0.07	1	0	0	0	0	1
......................................ATTTAGGTTTGCCTACCA.......................................................................................................	18	3	20	0.05	1	0	0	0	0	1

GATATGTATTTAATAATGAGAAAACAAATTGTATAGCGTTAATACAAACGAATGGTTTTGGTAACTTCGGTGGTCTTAGAAGTTATCAACAGTTACCGCTAGATCCGGAAAAATGCCAAAGGGCCCATCTGAATCTAACATGATATAAAACGTTTAAAA **********************************...........(((((......(((.(((((((..........))))))).)))......)))))...(((((.......)))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V042 embryo	M021 embryo	V111 male body
......................................................................TGGTCTTAGAAGTTATCAACAGTT.................................................................	24	0	3	2.00	6	3	0	2	1
.......................................................................GGTCTTAGAAGTTATCAACAGTT.................................................................	23	0	3	1.33	4	2	2	0	0
....................................................................GGTGGTCTTAGAAGTTATCAACAGTT.................................................................	26	0	3	1.00	3	2	0	0	1
...................................................................CGGTGGTCTTAGAAGTTATCAACAGTT.................................................................	27	0	3	0.67	2	2	0	0	0
.......................................................................................................TCCGGAAAAATGCCAAAGGGCCCATT..............................	26	1	2	0.50	1	0	1	0	0
.....................................................................ACGGTCTTAGAAGTTATCAACAGTT.................................................................	25	2	3	0.33	1	1	0	0	0
...................................................................................................................CCAAAGGGCCCTTCTGACT.........................	19	2	3	0.33	1	1	0	0	0
..............................................................................GAAGTTATCAACAGTTACCGCTAGAT.......................................................	26	0	3	0.33	1	1	0	0	0
.....................................................................GTGGTCTTAGAAGTTATCAACAGTT.................................................................	25	0	3	0.33	1	1	0	0	0
......................................................GTTTTGGTAACTTCGGTGGTCT...................................................................................	22	0	4	0.25	1	1	0	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_133:14318-14476 +	dpe_237	CTATACATA----AAT-TATTACTCTTT------TGTTTAACATATCGCAATTATG-TTT-GCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGGGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT
dp5	Unknown_group_115:5895-6053 -		CTATACATA----AAT-TATTACTCTTT------TGTTTAACATATCGCAATTATG-TTT-TCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGGGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT
droWil2	scf2_1100000004961:743436-743623 +		CTATTCATA----AATAAATTAATGAGT------TTTATTACAAATCAAAGTAATGATTT-GCTTACCAAGCCCATTGAAGCCACCAGAAGACGGTAAAGATACAGGTGTTGCTCCTTCAATAACTGGCAATGGTGATCGAGGCC-TCTTACGAGTTTTTCGGGAAGGCTCCTGGCTCTGCACAGTATTTTCATTGTTTT
droMoj3	scaffold_4610:962-1154 +		CTAAAAGACATTAAT-TAACTAATCACATAATATAAAATAATATATCGCAATGTTG-TTG-TCTTACCAGCACCAGTAAAGCCACCAGAAGATGGCAAAGCCACGCATGTTATACCTTTAATAGTTGGTAGTGGCGATCGTTGTC-TTTTCATGGATTTCCTAATAGGCTCAGA---CTGACCATTATCAGGCACATTCT
droAna3	scaffold_12984:68869-69059 -		CTGTGTAAAAAAAAC-TAATTATTCACA------AAAGTAACACATAGCAATTAAA-TTTGGTTTACCAGCTCCATTGAATCCACCCGAATTTGGCGGAGATGCGCACGCCGAATCTTCACTGATTGGTAATGGTGATCGCGGTC-TTTTTTCAGTTCTCTGGGAAGTCTCAGCTTTTTGTGCATTGTTTTGGACATTTT
droBip1	scf7180000393438:11041-11226 +		CCATATATA----AAT-TATTAATCACT------TATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT
droKik1	scf7180000301802:5791-5977 -		CTGTTAATA----AATTAATTAGTTATT------TGAGTACCATTATATAATTTAG-TTT-TCTTACCGGCACAATTGAAACCACCAGAAAAAGGCTCAGATGTACACACTGAATATTCCTTTATCGGCAGTGGTGAACGAGGTC-TCTTTGCAGGATTTTTGGTAATTTCCAGCTCCTGTACATTATCTTTGACATTAT
droFic1	scf7180000454130:5157-5342 +		CCATATATA----AAT-TATTAATCACT------TATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCTTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT
droRho1	scf7180000772745:11471-11635 +		CTGTGTAAATAAAAC-TAATTATTCACT------AAAATAACACA--GCAATTAAA-TTTGGCTTACCAGCTCCATTGAACCCACCAGA------------------------ATCTTCACAGATTGGTAATGGTGATCTCGGCC-TTTTTGCAGTTTTCTGAAAAGTCTCACCTATCTGTGCATTGTTTTGGACATTTT
droBia1	scf7180000301583:3815-3995 +		CTGTGTAAATAAAAT-CAATTACTCACA------AAAATAACACATAACAATTAAA-TTTAGCTTACCAGCTCCATTGAAACCATCAGAAATTGGAGGAGATGGGCACGCCGAATCTTCAACGATTGGTAATGGTGATCGCTGCC-TTTTCGGAGTTTTCTGGGAAGTCTTAGCTTCCTGTGCATTGTTT----------
droTak1	scf7180000414265:11912-12096 +		CTGAGTAAATAAAAC-TACTTATTCACA------AAAATACCACATAGCAATTAAA-TTTAGCTTACCAGCTCCATTGAACCCACCAGAAGTTGGCGGAGAT------GCCGAATCTTCAATGATTGGTAATGGTGATCGCGGCC-TTTTTGGAGTTTTCTGGAAAGTCTCAGCTTCCTGTGCATTGTTTGGGACATTTT
droEug1	scf7180000409148:52057-52242 +		CCATATATA----AAT-TATTAATCACT------TATATAAAAAATCTCAGTTATA-TT--GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGACGTTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGTCACTATTTAAAAAATTTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CTATACATA----AAT-TATTACTCTTT------TGTTTAACATATCGCAATTATG-TTT-GCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGGGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-......................................................	24	3	28.33	85	6	73	5	0	0	1
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGC........................................................	23	3	14.00	42	0	40	2	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-T.....................................................	25	3	11.67	35	4	31	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TT....................................................	26	3	6.00	18	5	13	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGG.........................................................	22	3	5.33	16	0	14	1	0	0	1
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-......................................................	23	3	2.67	8	0	8	0	0	0	0
..................................................................................................................TCTTCAATAGTTGTCAATGGCGATC.............................................................	25	3	2.67	8	0	8	0	0	0	0
...............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	27	4	1.75	7	1	6	0	0	0	0
...............................................................TTACCAAAACCATTGAAGCCACCAG................................................................................................................	25	4	1.00	4	0	4	0	0	0	0
...........................................................T-GCTTACCAAAACCATTGAAGCCACCA.................................................................................................................	27	4	1.00	4	0	4	0	0	0	0
.........................................................................................................................................TCTAGGCC-TTTTTACGGTTTCCCGGGC...................................	27	2	1.00	2	2	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	26	4	0.75	3	0	3	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGG.........................................................	21	3	0.67	2	0	2	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGC........................................................	27	3	0.67	2	0	2	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGC........................................................	22	3	0.67	2	0	2	0	0	0	0
..............................................................................................................................GTCAATGGCGATCTAGGCC-......................................................	19	3	0.67	2	2	0	0	0	0	0
...............................................................TTACCAAAACCATTGAAGCCACCA.................................................................................................................	24	4	0.50	2	0	2	0	0	0	0
..........................................................................................................................................................................TAGAT---TGTACTATATTTTGCAC.....	22	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---......................	25	2	0.50	1	1	0	0	0	0	0
...........................................................T-GCTTACCAAAACCATTGAAGCCAC...................................................................................................................	25	4	0.50	2	0	2	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-C.....................................................	25	3	0.33	1	0	1	0	0	0	0
..................................................................................................................TCTTCAATAGTTGTCAATG...................................................................	19	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCA-......................................................	24	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-......................................................	24	3	0.33	1	0	0	1	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC-......................................................	28	3	0.33	1	0	1	0	0	0	0
......................................................................................................................CAATAGTTGTCAATGGCGATCTAGGC........................................................	26	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-A.....................................................	25	3	0.33	1	1	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGT........................................................	23	3	0.33	1	0	1	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCG-......................................................	24	3	0.33	1	0	1	0	0	0	0
....................................................................................................................TTCAATAGTTGTCAATGGCGATCTAGGCC-......................................................	29	3	0.33	1	0	1	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-TT.............................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
......................................................TG-TTT-GCTTACCAAAACCATTGAAG.......................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
...............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	28	4	0.25	1	0	1	0	0	0	0
......................................TAACATATCGCAATTATG-TTT-GCT........................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAG................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-T..............................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0

dp5

CTATACATA----AAT-TATTACTCTTT------TGTTTAACATATCGCAATTATG-TTT-TCTTACCAAAACCATTGAAGCCACCAGA------------------------ATCTTCAATAGTTGTCAATGGCGATCTAGGCC-TTTTTACGGTTTCCCGGGTAGACTTAGAT---TGTACTATATTTTGCAAATTTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGC........................................................	23	6	738.83	4433	0	4110	162	0	135	1	5	11	9	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-......................................................	24	6	513.17	3079	2	2609	369	3	53	0	4	25	14	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGG.........................................................	22	6	287.67	1726	0	1616	12	0	44	1	10	22	21	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-T.....................................................	25	6	219.50	1317	3	1090	183	0	14	0	6	14	7	0
...........................T------TGTTTAACATATCGCAATTATG-TT.............................................................................................................................................	25	4	80.75	323	0	315	0	0	2	0	0	6	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TT....................................................	26	6	71.83	431	3	400	23	0	1	0	1	2	1	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGC........................................................	22	6	64.00	384	0	383	0	0	1	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-......................................................	23	6	43.00	258	0	256	2	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---......................	25	5	41.40	207	0	150	8	0	4	0	4	13	28	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTT...................................................	27	6	30.33	182	0	173	6	0	2	0	0	1	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAG..........................................................	21	6	25.00	150	0	131	1	0	4	0	2	5	7	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGG.........................................................	21	6	24.67	148	0	148	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-......................................................	24	6	24.67	148	1	130	11	0	3	0	0	0	3	0
...........................T------TGTTTAACATATCGCAATTATG-T..............................................................................................................................................	24	4	17.50	70	0	60	2	0	0	0	0	5	3	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-T.....................................................	24	6	17.00	102	0	101	1	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCA-......................................................	24	6	16.17	97	0	92	1	0	3	0	1	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGA..........................	24	5	13.00	65	0	42	0	0	2	0	0	10	11	0
..................................TGTTTAACATATCGCAATTATG-TT.............................................................................................................................................	24	4	11.00	44	0	44	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-C.....................................................	25	6	9.00	54	0	2	49	0	1	0	0	0	2	0
..................................................................................................................TCTTCAATAGTTGTCAATGGCGATC.............................................................	25	6	8.50	51	0	44	6	0	0	0	0	1	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATC.............................................................	22	6	8.00	48	0	42	5	0	1	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	26	5	7.60	38	0	33	4	0	0	0	0	1	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-TT....................................................	25	6	7.33	44	0	44	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGA........................................................	23	6	7.17	43	0	40	0	0	3	0	0	0	0	0
...........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGGGT...................................	25	6	6.67	40	0	19	11	0	8	0	2	0	0	0
.....................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAT---......................	26	5	6.40	32	0	14	2	0	0	0	0	12	4	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGT........................................................	23	6	6.33	38	0	36	2	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCA-A.....................................................	25	6	5.67	34	0	34	0	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---TG....................	27	5	5.40	27	0	26	1	0	0	0	0	0	0	0
........................................................................................................................ATAGTTGTCAATGGCGATCTAGGC........................................................	24	6	5.33	32	0	31	1	0	0	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGC........................................................	27	6	4.83	29	0	24	3	0	0	0	0	1	1	0
...........................................................................................................................GTTGTCAATGGCGATCTAGGC........................................................	21	6	4.33	26	0	26	0	0	0	0	0	0	0	0
............................................................................TGAAGCCACCAGA------------------------ATCTTCAATAGTTG.........................................................................	27	5	4.20	21	0	21	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-TTA-...........................................................................................................................................	26	4	4.00	16	0	16	0	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAA---......................	25	5	4.00	20	0	19	0	0	0	0	0	0	1	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-A.....................................................	25	6	4.00	24	0	20	3	0	1	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAGG.........................................................	26	6	3.83	23	0	15	1	0	0	0	1	0	6	0
...........................T------TGTTTAACATATCGCAATTATG-...............................................................................................................................................	23	4	3.75	15	0	12	0	0	0	0	0	3	0	0
.....................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGA..........................	25	5	3.40	17	0	5	0	0	0	0	0	4	8	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAG...........................	23	5	3.40	17	0	17	0	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---A.....................	26	5	3.20	16	0	11	1	0	2	0	0	2	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TA....................................................	26	6	3.17	19	0	18	1	0	0	0	0	0	0	0
...........................................................................................................................GTTGTCAATGGCGATCTAGGCC-......................................................	22	6	3.00	18	0	18	0	0	0	0	0	0	0	0
.........................TTT------TGTTTAACATATCGCAATTATG-TTT-...........................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	3	0	0
........................................................................................................................ATAGTTGTCAATGGCGATCTAGG.........................................................	23	6	2.83	17	0	17	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTTT..................................................	28	6	2.83	17	0	16	0	0	0	0	0	1	0	0
........................................................................................................................ATAGTTGTCAATGGCGATCTAGGCC-......................................................	25	6	2.67	16	0	13	3	0	0	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	28	5	2.60	13	0	11	1	0	1	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTA...........................................................	20	6	2.33	14	0	14	0	0	0	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	25	5	2.20	11	0	10	1	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCA-......................................................	23	6	2.00	12	0	12	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCT............................................................	19	6	2.00	12	0	12	0	0	0	0	0	0	0	0
........................................................................................................................ATAGTTGTCAATGGCGATCTAGGCC-T.....................................................	26	6	1.83	11	0	9	1	0	1	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGAA-......................................................	24	6	1.83	11	0	10	1	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-TTT...................................................	26	6	1.83	11	0	11	0	0	0	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAG..........................................................	25	6	1.67	10	0	7	0	0	0	0	0	2	1	0
.......................................................................................................................................................ACGGTTTCCCGGGTAGACTTAGAT---......................	24	5	1.60	8	0	8	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCT-A.....................................................	25	6	1.50	9	0	9	0	0	0	0	0	0	0	0
.....................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAG...........................	24	5	1.40	7	0	6	0	0	0	0	0	0	1	0
...............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	27	5	1.40	7	0	6	1	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TC....................................................	26	6	1.33	8	0	5	3	0	0	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC-......................................................	28	6	1.33	8	0	7	1	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGA.........................................................	22	6	1.33	8	0	7	0	0	0	0	1	0	0	0
...........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGGG....................................	24	6	1.33	8	0	7	1	0	0	0	0	0	0	0
......................................................................................................................CAATAGTTGTCAATGGCGATCTAGG.........................................................	25	6	1.33	8	0	6	0	0	0	0	0	1	1	0
..................................TGTTTAACATATCGCAATTATG-TTA-...........................................................................................................................................	25	4	1.25	5	0	5	0	0	0	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------AT.....................................................................................	27	5	1.20	6	0	6	0	0	0	0	0	0	0	0
...............................................................TTACCAAAACCATTGAAGCCACCAG................................................................................................................	25	5	1.20	6	0	4	2	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTA...................................................	27	6	1.17	7	0	4	0	0	0	0	0	3	0	0
...................................................................................................................................TGGCGATCTAGGCC-TTTTTACGGTT...........................................	25	6	1.17	7	0	6	1	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAG..........................................................	20	6	1.17	7	0	7	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCT-......................................................	23	6	1.17	7	0	6	1	0	0	0	0	0	0	0
...........................................................................................................................GTTGTCAATGGCGATCTAGGCC-T.....................................................	23	6	1.17	7	0	7	0	0	0	0	0	0	0	0
...........................................................T-TCTTACCAAAACCATTGAAGCCACC..................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...TACATA----AAT-TATTACTCTTT------TGTT..................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................TTGTCAATGGCGATCTAGGCC-T.....................................................	22	6	1.00	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTTTACGGTTTCCCGGGTAGACT..............................	24	5	1.00	5	0	4	1	0	0	0	0	0	0	0
....................................................................................................................TTCAATAGTTGTCAATGGCGATC.............................................................	23	6	1.00	6	0	6	0	0	0	0	0	0	0	0
...........................................................T-TCTTACCAAAACCATTGAAGCC.....................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................AAACCATTGAAGCCACCAGA------------------------ATCT...................................................................................	24	5	1.00	5	0	2	3	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAT---T.....................	26	5	1.00	5	0	4	1	0	0	0	0	0	0	0
.....................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAA---......................	26	5	1.00	5	0	4	0	0	0	0	0	0	1	0
...........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGG.....................................	23	6	1.00	6	0	6	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGAA........................................................	23	6	1.00	6	0	6	0	0	0	0	0	0	0	0
...................................................................................................................CTTCAATAGTTGTCAATGGCGATC.............................................................	24	6	1.00	6	0	5	1	0	0	0	0	0	0	0
...........................................................................................................................GTTGTCAATGGCGATCTAGG.........................................................	20	6	1.00	6	0	6	0	0	0	0	0	0	0	0
...............................................................TTACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	26	5	1.00	5	0	4	0	0	0	0	0	0	1	0
...........................T------TGTTTAACATATCGCAATTATG-TAA-...........................................................................................................................................	26	4	1.00	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................TTGTCAATGGCGATCTAGGC........................................................	20	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................TGTCAATGGCGATCTAGGCC-......................................................	20	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGT.........................................................	22	6	0.83	5	0	4	1	0	0	0	0	0	0	0
..................................................................................................................TCTTCAATAGTTGTCAATGGCGA...............................................................	23	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATC.............................................................	18	6	0.83	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGG........................................................	23	6	0.83	5	0	1	0	0	4	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGAT..............................................................	21	6	0.83	5	0	4	1	0	0	0	0	0	0	0
.............................................................................GAAGCCACCAGA------------------------ATCTTCAATAGTTG.........................................................................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACTTAGAA---A.....................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
............................................................................TGAAGCCACCAGA------------------------ATCTTCAATAGT...........................................................................	25	5	0.80	4	0	2	0	0	2	0	0	0	0	0
....................................................................AAAACCATTGAAGCCACCAGA------------------------ATCT...................................................................................	25	5	0.80	4	0	3	1	0	0	0	0	0	0	0
.....................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAA---A.....................	27	5	0.80	4	0	4	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTAT.................................................................................................................................................	22	4	0.75	3	0	2	1	0	0	0	0	0	0	0
..................................TGTTTAACATATCGCAATTATG-T..............................................................................................................................................	23	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGTA-......................................................	24	6	0.67	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................TTCAATAGTTGTCAATGGCGA...............................................................	21	6	0.67	4	0	3	1	0	0	0	0	0	0	0
.............................................................................................................................TGTCAATGGCGATCTAGGCC-T.....................................................	21	6	0.67	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................TAGGCC-TTTTTACGGTTTCCCGGGC...................................	25	6	0.67	4	0	0	3	0	1	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCG................................................................	19	6	0.67	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................ATAGTTGTCAATGGCGATCTAGGCC-TT....................................................	27	6	0.67	4	0	3	1	0	0	0	0	0	0	0
............................................................................................................................TTGTCAATGGCGATCTAGGCC-......................................................	21	6	0.67	4	0	3	1	0	0	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCT............................................................	23	6	0.67	4	0	4	0	0	0	0	0	0	0	0
.....................................................................AAACCATTGAAGCCACCAGA------------------------ATCTTC.................................................................................	26	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.....................................................................AAACCATTGAAGCCACCAGA------------------------ATCTT..................................................................................	25	5	0.60	3	0	3	0	0	0	0	0	0	0	0
..................................................................CCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	23	5	0.60	3	0	3	0	0	0	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCA.................................................................................................................	23	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.................................................................ACCAAAACCATTGAAGCCACCAGA------------------------A......................................................................................	25	5	0.60	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAGAT---......................	27	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...........................................................................TTGAAGCCACCAGA------------------------ATCTTCAATAGT...........................................................................	26	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................TTTTACGGTTTCCCGGGTAGACTT.............................	24	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACGGTTTCCCGGGTAGACTTAGAA---......................	24	5	0.60	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCA-A.....................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTAGGCC-T.....................................................	29	6	0.50	3	0	2	1	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-C.....................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATT...................................................................................................................................................	20	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................GTTGTCAATGGCGATCTAGGCC-TT....................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................CAATAGTTGTCAATGGCGATC.............................................................	21	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGA........................................................	22	6	0.50	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................CAATGGCGATCTAGGCC-T.....................................................	18	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................TGTCAATGGCGATCTAGG.........................................................	18	6	0.50	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................TTGTCAATGGCGATCTAGG.........................................................	19	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-AC....................................................	26	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-G.....................................................	25	6	0.50	3	0	0	3	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TAA...................................................	27	6	0.50	3	0	2	0	0	0	0	0	1	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGATCTA...........................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAA..........................................................	21	6	0.50	3	0	3	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-TTA-A..........................................................................................................................................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................GTTTCCCGGGTAGACTTAGAT---......................	21	5	0.40	2	0	1	0	0	1	0	0	0	0	0
..............................................................CTTACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................CC-TTTTTACGGTTTCCCGGGTAGACT..............................	26	5	0.40	2	0	0	1	0	1	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	27	5	0.40	2	0	1	1	0	0	0	0	0	0	0
...........................................................................TTGAAGCCACCAGA------------------------ATCTTCAA...............................................................................	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................TTACGGTTTCCCGGGTAGACTTAGAT---A.....................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
....................................................................AAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.....................................................................AAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................C-TTTTTACGGTTTCCCGGGTAGACT..............................	25	5	0.40	2	0	1	1	0	0	0	0	0	0	0
............................................................................TGAAGCCACCAGA------------------------ATCTTCAATAGTT..........................................................................	26	5	0.40	2	0	1	0	0	0	0	0	0	1	0
............................................................................TGAAGCCACCAGA------------------------ATCTTCA................................................................................	20	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.....................................................................AAACCATTGAAGCCACCAGA------------------------AT.....................................................................................	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACGGTTTCCCGGGTAGACTTAGAT---TG....................	26	5	0.40	2	0	1	0	0	0	0	0	0	1	0
.................................................................ACCAAAACCATTGAAGCCACCAGA------------------------.......................................................................................	24	5	0.40	2	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAGA..........................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................................................................ACCAAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTTTACGGTTTCCCGGGTAGA................................	22	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................................................................ACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	26	5	0.40	2	0	1	0	0	0	0	0	0	1	0
................................................................TACCAAAACCATTGAAGCCACCAGA------------------------ATCT...................................................................................	29	5	0.40	2	0	2	0	0	0	0	0	0	0	0
............................................................................TGAAGCCACCAGA------------------------ATCTTC.................................................................................	19	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTTTACGGTTTCCCGGGTAGAC...............................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................TTTTACGGTTTCCCGGGTAGACT..............................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
................................................................TACCAAAACCATTGAAGCCACCAG................................................................................................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
............................................................................TGAAGCCACCAGA------------------------ATCTT..................................................................................	18	5	0.40	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAG...........................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.............................................................................GAAGCCACCAGA------------------------ATCTTCAA...............................................................................	20	5	0.40	2	0	2	0	0	0	0	0	0	0	0
....................................................................AAAACCATTGAAGCCACCAGA------------------------AT.....................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TGTCAATGGCGATCTAGGCC-TT....................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TGTCAATGGCGATCTAGGC........................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-A.....................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................GTCAATGGCGATCTAGGC........................................................	18	6	0.33	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................CAATAGTTGTCAATGGCGATCTA...........................................................	23	6	0.33	2	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TG....................................................	26	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................GTCAATGGCGATCTAGGCC-......................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................GTCAATGGCGATCTAGGCC-T.....................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGCC-TTG...................................................	27	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................TCTAGGCC-TTTTTACGGTTTCCCGGG....................................	26	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGCC-TC....................................................	25	6	0.33	2	0	1	1	0	0	0	0	0	0	0
............................................................................................................................TTGTCAATGGCGATCTAGGCC-TTT...................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................TCAATGGCGATCTAGGCC-TT....................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGGTT-......................................................	24	6	0.33	2	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................TCAATAGTTGTCAATGGCGA...............................................................	20	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGAA-......................................................	23	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................ATCTTCAATAGTTGTCAATGGCGATC.............................................................	26	6	0.33	2	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................TAGTTGTCAATGGCGATCTAGC.........................................................	22	6	0.33	2	0	0	1	0	1	0	0	0	0	0
......................................................................................................................CAATAGTTGTCAATGGCGATCA............................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................TCTTCAATAGTTGTCAATGGCG................................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGGT........................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................GTTGTCAATGGCGATCTAGGCC-TTT...................................................	25	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................AGTTGTCAATGGCGATCTAGT.........................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCCCGGGTAGACTTAGAT---TGTACTA...............	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................CAATAGTTGTCAATGGCGATCTAG..........................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................CTTCAATAGTTGTCAATGGCG................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...................................GTTTAACATATCGCAATTATG-TT.............................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................TGTTTAACATATCGCAATTA..................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................TTAACATATCGCAATTATG-TT.............................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................TAACATATCGCAATTATG-TT.............................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................TGTTTAACATATCGCAATTATG-...............................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-TTA-AA.........................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-C..............................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..................................TGTTTAACATATCGCAATTATG-TTA-A..........................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-TAA-A..........................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTATG-TA.............................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAAAA...................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................GTTTAACATATCGCAATTATG-T..............................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................GTTTAACATATCGCAATTAT.................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................T------TGTTTAACATATCGCAATTA..................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................................................CCAAAACCATTGAAGCCACCA.................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................ACCAAAACCATTGAAGCCACC..................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................TTTACGGTTTCCCGGGTAGACTTAGAA---......................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..................................................................CCAAAACCATTGAAGCCACCAG................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	1	0	0	0
..................................................................CCAAAACCATTGAAGCCACCAGA------------------------ATC....................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................CTTACCAAAACCATTGAAGCCACCAGA------------------------AA.....................................................................................	29	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CATTGAAGCCACCAGA------------------------ATCTTCAATA.............................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................TTGAAGCCACCAGA------------------------ATCTT..................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TACGGTTTCCCGGGTAGACAA.............................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0
......................................................................AACCATTGAAGCCACCAGA------------------------ATCTT..................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0

droWil2

CTATTCATA----AATAAATTAATGAGT------TTTATTACAAATCAAAGTAATGATTT-GCTTACCAAGCCCATTGAAGCCACCAGAAGACGGTAAAGATACAGGTGTTGCTCCTTCAATAACTGGCAATGGTGATCGAGGCC-TCTTACGAGTTTTTCGGGAAGGCTCCTGGCTCTGCACAGTATTTTCATTGTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTT...........................................	25	20	2.35	47	0	3	0	44	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTCAA...............................................................................	26	20	1.70	34	0	12	0	22	0
...................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTTTT.........................................	27	20	1.00	20	0	2	0	17	1
.........................................................................CATTGAAGCCACCAGAAGACGG.........................................................................................................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-......................................................	24	20	0.70	14	1	11	0	2	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTCA................................................................................	25	20	0.65	13	0	4	0	9	0
...................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGT............................................	24	20	0.55	11	0	2	0	9	0
..........................................................................................GACGGTAAAGATACAGGTGTTGCTC.....................................................................................	25	20	0.50	10	0	0	0	10	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-T.....................................................	25	20	0.45	9	2	5	1	1	0
...................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTTT..........................................	26	20	0.40	8	0	7	1	0	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGC........................................................	23	20	0.40	8	0	1	0	7	0
.....................................................................................................................TCAATAACTGGCAATGGTGATCGAGG.........................................................	26	20	0.35	7	0	7	0	0	0
...................................................TAATGATTT-GCTTACCAAGCCCAT............................................................................................................................	24	20	0.35	7	0	1	0	6	0
........................................................................................AAGACGGTAAAGATACAGGTGTTGC.......................................................................................	25	20	0.30	6	0	1	0	5	0
..............................................................................................................TGCTCCTTCAATAACTGGCAATGGTG................................................................	26	20	0.30	6	0	6	0	0	0
.................................................................................................................TCCTTCAATAACTGGCAATGGTGATCG............................................................	27	20	0.25	5	0	2	0	3	0
..............................................................................................................TGCTCCTTCAATAACTGGCAATGGTGA...............................................................	27	20	0.25	5	0	5	0	0	0
.......................................................................................GAAGACGGTAAAGATACAGGTGTTGC.......................................................................................	26	20	0.20	4	0	1	0	3	0
................................................................................GCCACCAGAAGACGGTAAAGATACAGG.............................................................................................	27	15	0.20	3	0	3	0	0	0
.........................................................................................AGACGGTAAAGATACAGGTGTTGC.......................................................................................	24	20	0.20	4	0	0	0	4	0
..........................................................................................GACGGTAAAGATACAGGTGTTGCTCC....................................................................................	26	20	0.20	4	0	1	0	3	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TCT...................................................	27	20	0.20	4	0	3	1	0	0
.....................................................................................................................TCAATAACTGGCAATGGTGATCGAG..........................................................	25	20	0.15	3	0	2	0	1	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTC.................................................................................	24	20	0.15	3	0	1	0	2	0
................................................................................................................................CAATGGTGATCGAGGCC-TCTTACGA..............................................	25	20	0.15	3	0	0	0	3	0
......................................................................................................................CAATAACTGGCAATGGTGATCGAGG.........................................................	25	20	0.15	3	0	1	0	2	0
.........................................................................................................................................TCGAGGCC-TCTTACGAGTTTTTCGGG....................................	26	20	0.15	3	0	1	0	2	0
......................................................................................................................................TGATCGAGGCC-TCTTACGAGTTTTTCG......................................	27	20	0.15	3	0	2	0	1	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TC....................................................	26	20	0.15	3	0	2	0	1	0
............................................................................................................................................................................TGGCTCTGCACAGTATTTTCATTGTTT.	27	19	0.11	2	0	2	0	0	0
.................................................................................................................TCCTTCAATAACTGGCAATGGTGA...............................................................	24	20	0.10	2	0	2	0	0	0
.................................................................................................................TCCTTCAATAACTGGCAATGGTGATCGA...........................................................	28	20	0.10	2	0	2	0	0	0
..........................................................................................................................AACTGGCAATGGTGATCGAGGCC-......................................................	23	20	0.10	2	0	1	0	1	0
...............................................................................................................GCTCCTTCAATAACTGGCAATGGTGA...............................................................	26	20	0.10	2	0	2	0	0	0
.........................................................................................................................................TCGAGGCC-TCTTACGAGTTTTTCGGGA...................................	27	20	0.10	2	0	2	0	0	0
..........................................................................................GACGGTAAAGATACAGGTGTTGCTCCT...................................................................................	27	20	0.10	2	0	0	0	2	0
................................................................................................................................CAATGGTGATCGAGGCC-TCTTACGAG.............................................	26	20	0.10	2	0	0	0	2	0
......................................................................................................................CAATAACTGGCAATGGTGATCGAGGCC-......................................................	27	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................TGGCTCTGCACAGTATTTTCATTGTT..	26	19	0.05	1	0	1	0	0	0
................................................................................................AAAGATACAGGTGTTGCTCCT...................................................................................	21	20	0.05	1	0	0	0	0	1
.....................................................................................................TACAGGTGTTGCTCCTTCAATAACT..........................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................................GGCAATGGTGATCGAGGCC-TCTTACGA..............................................	27	20	0.05	1	0	1	0	0	0
....................................................................................................................TTCAATAACTGGCAATGGTGATC.............................................................	23	20	0.05	1	0	0	0	1	0
.............................................................................................................................TGGCAATGGTGATCGAGGCC-TCTTACGT..............................................	28	20	0.05	1	0	1	0	0	0
......................................................................................................................................TGATCGAGGCC-TCTTACGAGTTTTT........................................	25	20	0.05	1	0	1	0	0	0
...................................................................................ACCAGAAGACGGTAAAGATACAGGTG...........................................................................................	26	20	0.05	1	0	0	0	1	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTT..................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................................................................................................GGTGATCGAGGCC-TCTTACGAGTTT..........................................	25	20	0.05	1	0	0	0	1	0
.....................................................................................CAGAAGACGGTAAAGATACAGGTGT..........................................................................................	25	20	0.05	1	0	0	0	1	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTCAAT..............................................................................	27	20	0.05	1	0	1	0	0	0
................................................................................................AAAGATACAGGTGTTGCTCCTTC.................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................ACTGGCAATGGTGATCGAGGCC-TCT...................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................TTCAATAACTGGCAATGGTGATCGAGGC........................................................	28	20	0.05	1	0	1	0	0	0
..............................................................................................GTAAAGATACAGGTGTTGCTCCTT..................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TT....................................................	26	20	0.05	1	0	1	0	0	0
..................................................................................CACCAGAAGACGGTAAAGATACAGGTG...........................................................................................	27	20	0.05	1	0	0	0	1	0
.............................................................................................................................TGGCAATGGTGATCGAGGCC-......................................................	20	20	0.05	1	0	1	0	0	0
..................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAGTTTT.........................................	28	20	0.05	1	0	1	0	0	0
...................................................................................................................................TGGTGATCGAGGCC-TCTTACGAGTTTA.........................................	27	20	0.05	1	0	1	0	0	0
.............................................TCAAAGTAATGATTT-GCTTACCAAGCCC..............................................................................................................................	28	20	0.05	1	0	1	0	0	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGG.........................................................	22	20	0.05	1	0	0	0	1	0
..................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAGT............................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................................C-TCTTACGAGTTTTTCGGGAAGGCTC.............................	26	20	0.05	1	0	1	0	0	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTT.................................................................................	24	20	0.05	1	0	0	0	1	0
....................................................AATGATTT-GCTTACCAAGCCCATT...........................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................AGACGGTAAAGATACAGGTGTTGCTC.....................................................................................	26	20	0.05	1	0	0	0	1	0
................................................AAGTAATGATTT-GCTTACCAAGCCCAT............................................................................................................................	27	20	0.05	1	0	0	0	1	0
.................................................................................................................................AATGGTGATCGAGGCC-TCTTACGAGT............................................	26	20	0.05	1	0	0	0	1	0
......................................................................................................................CAATAACTGGCAATGGTGATCGAG..........................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................AATAACTGGCAATGGTGATCGAGGC........................................................	25	20	0.05	1	0	0	0	0	1
..................................................................................................AGATACAGGTGTTGCTCCTTCA................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................AATGGTGATCGAGGCC-TCTTACGAG.............................................	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TCA...................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................TCGAGGCC-TCTTACGAGTTTTTCG......................................	24	20	0.05	1	0	0	0	1	0
...................................................................................ACCAGAAGACGGTAAAGATACAGGTGT..........................................................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................TGTTGCTCCTTCAATAACTGGCAATGG..................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................TGGCAATGGTGATCGAGGCC-TCTTT.................................................	25	20	0.05	1	0	1	0	0	0
.................................................................................................AAGATACAGGTGTTGCTCCTTCAATTC............................................................................	27	20	0.05	1	0	1	0	0	0
...............................................................................................TAAAGATACAGGTGTTGC.......................................................................................	18	20	0.05	1	0	0	0	1	0
....................................................................................................................TTCAATAACTGGCAATGGTGATCGAG..........................................................	26	20	0.05	1	0	1	0	0	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TCTT..................................................	28	20	0.05	1	0	1	0	0	0
..................................................................................................................................................TCTTACGAGTTTTTCGGG....................................	18	20	0.05	1	0	1	0	0	0
.........................................................................................AGACGGTAAAGATACAGGTGTTGCTCT....................................................................................	27	20	0.05	1	0	0	0	1	0
....................................................................................................................TTCAATAACTGGCAATGGTGATCGAGG.........................................................	27	20	0.05	1	0	1	0	0	0
..................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAG.............................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................TCCTTCAATAACTGGCAATGGTGATC.............................................................	26	20	0.05	1	0	0	0	1	0
.....................................................................................................................TCAATAACTGGCAATGGTGATCGAGGC........................................................	27	20	0.05	1	0	0	0	1	0
.........................................................................................................................TAACTGGCAATGGTGATCGAG..........................................................	21	20	0.05	1	0	1	0	0	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTCAATT.............................................................................	28	20	0.05	1	0	0	0	1	0
...............................................................................................TAAAGATACAGGTGTTGCTCCTTCAATA.............................................................................	28	20	0.05	1	0	1	0	0	0
.........................................................................................................................TAACTGGCAATGGTGATCGAGGCC-TTA...................................................	27	20	0.05	1	0	0	0	1	0
..................................................................................................................................ATGGTGATCGAGGCC-TCTTACGAGTTT..........................................	27	20	0.05	1	0	0	0	1	0
...............................................................................................................................GCAATGGTGATCGAGGCC-TCTTACGA..............................................	26	20	0.05	1	0	0	0	1	0
......................................................................................................................................TGATCGAGGCC-TCTTACGAGTT...........................................	22	20	0.05	1	0	0	0	1	0

droMoj3

CTAAAAGACATTAAT-TAACTAATCACATAATATAAAATAATATATCGCAATGTTG-TTG-TCTTACCAGCACCAGTAAAGCCACCAGAAGATGGCAAAGCCACGCATGTTATACCTTTAATAGTTGGTAGTGGCGATCGTTGTC-TTTTCATGGATTTCCTAATAGGCTCAGA---CTGACCATTATCAGGCACATTCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGCACA....	29	7	4.86	34	31	0	0	0	3	0
....................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGC.......	26	8	3.38	27	23	0	0	0	4	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGGC.................................................................	25	8	3.25	26	21	1	0	0	4	0
....................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGCAC.....	28	7	2.71	19	11	0	0	0	8	0
....................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGGCA......	27	7	1.71	12	12	0	0	0	0	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGA...............................................................	27	8	1.50	12	9	0	0	0	2	1
.........................................................TTG-TCTTACCAGCACCAGTAAAGCC.....................................................................................................................	25	8	1.50	12	7	0	0	0	5	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGGCG................................................................	26	8	1.38	11	11	0	0	0	0	0
................................................................TACCAGCACCAGTAAAGCCACCAGAAG.............................................................................................................	27	8	0.88	7	1	0	0	0	6	0
.........................................................................................................................................................................TCAGA---CTGACCATTATCAGGCACA....	24	7	0.86	6	6	0	0	0	0	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGATC.............................................................	29	8	0.75	6	2	0	0	0	4	0
.........................................................TTG-TCTTACCAGCACCAGTAAAGCCACC..................................................................................................................	28	8	0.75	6	3	0	0	0	3	0
...........................................TATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	26	8	0.63	5	3	0	0	0	2	0
.........................................................................................................................................................................TCAGA---CTGACCATTATCAGGCACATTC.	27	7	0.57	4	4	0	0	0	0	0
....................................................................................................................................................................TAGGCTCAGA---CTGACCATTATCAGG........	25	8	0.50	4	4	0	0	0	0	0
.............................................TCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	24	8	0.50	4	2	0	0	0	2	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGG..................................................................	24	8	0.50	4	3	0	0	0	1	0
................................................................TACCAGCACCAGTAAAGCCACCAGAAGAT...........................................................................................................	29	8	0.38	3	1	0	0	0	2	0
.........................................................TTG-TCTTACCAGCACCAGTAAAGCCA....................................................................................................................	26	8	0.38	3	2	0	0	0	1	0
..........................................................TG-TCTTACCAGCACCAGTAAAGCCAC...................................................................................................................	26	8	0.38	3	1	0	0	0	2	0
..........................................ATATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	27	8	0.38	3	3	0	0	0	0	0
................................................................TACCAGCACCAGTAAAGCCACCAGAA..............................................................................................................	26	8	0.38	3	1	1	0	0	1	0
.........................................................................................................................................................................TCAGA---CTGACCATTATCAGGCACATT..	26	7	0.29	2	1	0	0	0	1	0
.....................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGCACA....	28	7	0.29	2	2	0	0	0	0	0
...............................................................TTACCAGCACCAGTAAAGCCACCA.................................................................................................................	24	8	0.25	2	2	0	0	0	0	0
.........................................................TTG-TCTTACCAGCACCAGTAAAG.......................................................................................................................	23	8	0.25	2	2	0	0	0	0	0
...............................................................................................................ATACCTTTAATAGTTGGTAGTGG..................................................................	23	8	0.25	2	2	0	0	0	0	0
.......................TCACATAATATAAAATAATATATCGCA......................................................................................................................................................	27	8	0.25	2	2	0	0	0	0	0
.........................................................TTG-TCTTACCAGCACCAGTAAAGCCAC...................................................................................................................	27	8	0.25	2	2	0	0	0	0	0
.............................................TCGCAATGTTG-TTG-TCTTACCAGCACC..............................................................................................................................	27	8	0.25	2	0	0	0	0	2	0
............................................................................................................................................................................GA---CTGACCATTATCAGGCAC.....	20	7	0.14	1	1	0	0	0	0	0
.....................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGCA......	26	7	0.14	1	1	0	0	0	0	0
.....................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGCAC.....	27	7	0.14	1	1	0	0	0	0	0
.........................................................................................................................................................................TCAGA---CTGACCATTATCAGGCAC.....	23	7	0.14	1	1	0	0	0	0	0
..........................................................................................................................................................................CAGA---CTGACCATTATCAGGCACATT..	25	7	0.14	1	1	0	0	0	0	0
......................................................................................................................................................................GGCTCAGA---CTGACCATTATCAGGCA......	25	7	0.14	1	1	0	0	0	0	0
...................................................TGTTG-TTG-TCTTACCAGCA................................................................................................................................	19	8	0.13	1	1	0	0	0	0	0
...............................TATAAAATAATATATCGCAATG...................................................................................................................................................	22	8	0.13	1	1	0	0	0	0	0
............................................ATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
...............................................................TTACCAGCACCAGTAAAGCCACCAGA...............................................................................................................	26	8	0.13	1	0	0	0	0	1	0
................TAACTAATCACATAATATAAAATAAT..............................................................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
.....................................................TTG-TTG-TCTTACCAGCACCAGTAAAGC......................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
....................................................................................................................................................................TAGGCTCAGA---CTGACCATTATC...........	22	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................TTTCCTAATAGGCTCAGA---CTGACCATTA.............	28	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................TTAATAGTTGGTAGTGGCGATCG............................................................	23	8	0.13	1	1	0	0	0	0	0
......................................................TG-TTG-TCTTACCAGCACCAGTAA.........................................................................................................................	23	8	0.13	1	1	0	0	0	0	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGT...............................................................	27	8	0.13	1	1	0	0	0	0	0
................................................................TACCAGCACCAGTAAAGCCACCAGAAGA............................................................................................................	28	8	0.13	1	0	0	0	0	1	0
.............................................................................................................................................................TTCCTAATAGGCTCAGA---CTGACCATTATC...........	29	8	0.13	1	1	0	0	0	0	0
......................................................TG-TTG-TCTTACCAGCACCAGTAAAG.......................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTGGCGAT..............................................................	28	8	0.13	1	0	0	0	0	1	0
.....................................................................................................................TTAATAGTTGGTAGTGGCGATCGTT..........................................................	25	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGG........	24	8	0.13	1	1	0	0	0	0	0
.....................................................TTG-TTG-TCTTACCAGCAC...............................................................................................................................	18	8	0.13	1	0	0	0	0	1	0
..............................................................................................................TATACCTTTAATAGTTGGTAGTG...................................................................	23	8	0.13	1	1	0	0	0	0	0
................................................................TACCAGCACCAGTAAAGCCACCAGA...............................................................................................................	25	8	0.13	1	0	0	0	0	1	0
.....................................................TTG-TTG-TCTTACCAGCACCAGTAAAGCCA....................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
...............................................................................................................ATACCTTTAATAGTTGGTAGTGGCGA...............................................................	26	8	0.13	1	1	0	0	0	0	0
...............................................................................................................ATACCTTTAATAGTTGGTAGTGGC.................................................................	24	8	0.13	1	1	0	0	0	0	0
..................................................................................................................CCTTTAATAGTTGGTAGTGGC.................................................................	21	8	0.13	1	1	0	0	0	0	0
.....................................................................................................CACGCATGTTATACCTTTAATAGTTGG........................................................................	27	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................AGGCTCAGA---CTGACCATTATCAGGC.......	25	8	0.13	1	1	0	0	0	0	0
...........................................................................................................TGTTATACCTTTAATAGTTGGTAGTGGC.................................................................	28	8	0.13	1	1	0	0	0	0	0
.............................................TCGCAATGTTG-TTG-TCTTACCAGCACCA.............................................................................................................................	28	8	0.13	1	1	0	0	0	0	0
........................................................................................................................................................................CTCAGA---CTGACCATTATCAGGC.......	22	8	0.13	1	1	0	0	0	0	0
...............................................................TTACCAGCACCAGTAAAGCCACCAG................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
......................................TAATATATCGCAATGTTG-TTG-TCT........................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................TCCTAATAGGCTCAGA---CTGACCATTA.............	26	8	0.13	1	1	0	0	0	0	0
.............................................................................................................TTATACCTTTAATAGTTGGTAGTGGCGA...............................................................	28	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................TAGTTGGTAGTGGCGATCGTTGTC-TTT...................................................	27	8	0.13	1	1	0	0	0	0	0
......................................................TG-TTG-TCTTACCAGCACCAGTAAAGCC.....................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
.........................................................TTG-TCTTACCAGCACCAGT...........................................................................................................................	19	8	0.13	1	1	0	0	0	0	0
....................................................................................CCAGAAGATGGCAAAGCCACGCATG...........................................................................................	25	8	0.13	1	1	0	0	0	0	0
...............................................................TTACCAGCACCAGTAAAGCCACCAGAA..............................................................................................................	27	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................................................TAATAGGCTCAGA---CTGACCATTATCAGG........	28	8	0.13	1	1	0	0	0	0	0
.............................................TCGCAATGTTG-TTG-TCTTACCAGCAC...............................................................................................................................	26	8	0.13	1	0	0	0	0	1	0
...................................................................CAGCACCAGTAAAGCCACCAGAAGATT..........................................................................................................	27	8	0.13	1	0	0	0	0	1	0
.........................................................TTG-TCTTACCAGCACCAGTAAAGCCACCA.................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
....................TAATCACATAATATAAAATAATATATCGC.......................................................................................................................................................	29	8	0.13	1	1	0	0	0	0	0
.....................................................TTG-TTG-TCTTACCAGCACCAGTAAAG.......................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
..............................................................CTTACCAGCACCAGTAAAGCCACCAGA...............................................................................................................	27	8	0.13	1	0	0	0	0	1	0
..........................................................TG-TCTTACCAGCACCAGTAAAGCCACC..................................................................................................................	27	8	0.13	1	0	0	0	0	1	0
.........................................TATATCGCAATGTTG-TTG-TCTTACCAGC.................................................................................................................................	28	8	0.13	1	1	0	0	0	0	0
...............................................................TTACCAGCACCAGTAAAGCCACCAGAAG.............................................................................................................	28	8	0.13	1	1	0	0	0	0	0
.............................................TCGCAATGTTG-TTG-TCTTACCAGCA................................................................................................................................	25	8	0.13	1	1	0	0	0	0	0
...................................................TGTTG-TTG-TCTTACCAGCACCAGT...........................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
..............................................................................................................................................................TCCTAATAGGCTCAGA---CTGACCATT..............	25	8	0.13	1	1	0	0	0	0	0
............................................................................................TGGCAAAGCCACGCATGTTATACCTT..................................................................................	26	8	0.13	1	1	0	0	0	0	0
......................................................TG-TTG-TCTTACCAGCACCAGTAAAGCCAC...................................................................................................................	29	8	0.13	1	0	0	0	0	1	0
.................................................................................CCACCAGAAGATGGCAAAGCCACGCATG...........................................................................................	28	8	0.13	1	1	0	0	0	0	0

droAna3

CTGTGTAAAAAAAAC-TAATTATTCACA------AAAGTAACACATAGCAATTAAA-TTTGGTTTACCAGCTCCATTGAATCCACCCGAATTTGGCGGAGATGCGCACGCCGAATCTTCACTGATTGGTAATGGTGATCGCGGTC-TTTTTTCAGTTCTCTGGGAAGTCTCAGCTTTTTGTGCATTGTTTTGGACATTTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................TTTCAGTTCTCTGGGAAGTCTCAGC..........................	25	1	7.00	7	4	3	0	0	0	0
................................................................TACCAGCTCCATTGAATCCACCCGA...............................................................................................................	25	1	7.00	7	6	1	0	0	0	0
................................................................TACCAGCTCCATTGAATCCACCCGAA..............................................................................................................	26	1	5.00	5	5	0	0	0	0	0
.......................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGCT.........................	24	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................................................TTTCAGTTCTCTGGGAAGTCTCAGCT.........................	26	1	2.00	2	1	0	0	0	1	0
....................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAGC..........................	26	1	2.00	2	2	0	0	0	0	0
.......................................................................TCCATTGAATCCACCCGAATTTGGCGGA.....................................................................................................	28	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................................TTTTTGTGCATTGTTTTGGAC.....	21	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................TTTTTCAGTTCTCTGGGAAGTCTCAGC..........................	27	1	2.00	2	1	1	0	0	0	0
.........................................................TTTGGTTTACCAGCTCCATTGAATCC.....................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................TTACCAGCTCCATTGAATCCACCCGA...............................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAG...........................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................TAATGGTGATCGCGGTC-TTTTTTCAGT............................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAGCTT........................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................CCCGAATTTGGCGGAGATGCGC..............................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGCTT........................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGC..........................	23	1	1.00	1	0	1	0	0	0	0
.........................................................................CATTGAATCCACCCGAATTTGGCGG......................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................AAGTAACACATAGCAATTAAA-TTTGGT.........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................TTTTTCAGTTCTCTGGGAAGTCTCAG...........................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................TCAGTTCTCTGGGAAGTCTCAGCTTT.......................	26	1	1.00	1	1	0	0	0	0	0
................................................................TACCAGCTCCATTGAATCCACCCGAAT.............................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................TCAGTTCTCTGGGAAGTCTCA............................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................TTTCAGTTCTCTGGGAAGTCTCAG...........................	24	1	1.00	1	1	0	0	0	0	0
................................................................TACCAGCTCCATTGAATCCACCCGAATTT...........................................................................................................	29	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TTTTCAGTTCTCTGGGAAGTCTCAGCT.........................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................TGATTGGTAATGGTGATCGCGGTC-......................................................	24	5	1.00	5	4	0	1	0	0	0
................................................................................TCCACCCGAATTTGGCGGAGATGC................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................TGATTGGTAATGGTGATCGCGGTC-T.....................................................	25	5	0.40	2	1	1	0	0	0	0
......................................................................................................................CACTGATTGGTAATGGTGATCGCGG.........................................................	25	5	0.40	2	2	0	0	0	0	0
.....................................................................................................................TCACTGATTGGTAATGGTGATCGC...........................................................	24	5	0.40	2	1	1	0	0	0	0
.........................................................................................................................TGATTGGTAATGGTGATCGCGG.........................................................	22	5	0.40	2	2	0	0	0	0	0
.........................................................................................................................TGATTGGTAATGGTGATCGCGGTC-C.....................................................	25	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................TCACTGATTGGTAATGGTGATCGCGGTC-......................................................	28	5	0.20	1	1	0	0	0	0	0
...........................................CATAGCAATTAAA-TTTGGTTTACCAGCTC...............................................................................................................................	29	5	0.20	1	1	0	0	0	0	0
....................................................................................................................TTCACTGATTGGTAATGGTGATCGCGG.........................................................	27	5	0.20	1	0	1	0	0	0	0
...................................................................................................GATGCGCACGCCGAATCTTCACTGATTGG........................................................................	29	5	0.20	1	1	0	0	0	0	0
............................................................................................................................TTGGTAATGGTGATCGCGGTC-TT....................................................	23	5	0.20	1	1	0	0	0	0	0
...............................................................................................................GAATCTTCACTGATTGGTAATGGT.................................................................	24	5	0.20	1	1	0	0	0	0	0
.........................................................................................................................TGATTGGTAATGGTGATCGCGGT........................................................	23	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................GATTGGTAATGGTGATCGCGGT........................................................	22	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................GATTGGTAATGGTGATCGCGGTC-......................................................	23	5	0.20	1	1	0	0	0	0	0
.....................................................................................................................TCACTGATTGGTAATGGTGATCGCGG.........................................................	26	5	0.20	1	0	0	0	0	1	0
...................................................................................................GATGCGCACGCCGAATCTTCACTGA............................................................................	25	5	0.20	1	1	0	0	0	0	0

droBip1

CCATATATA----AAT-TATTAATCACT------TATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGTTAATA----AATTAATTAGTTATT------TGAGTACCATTATATAATTTAG-TTT-TCTTACCGGCACAATTGAAACCACCAGAAAAAGGCTCAGATGTACACACTGAATATTCCTTTATCGGCAGTGGTGAACGAGGTC-TCTTTGCAGGATTTTTGGTAATTTCCAGCTCCTGTACATTATCTTTGACATTAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCATATATA----AAT-TATTAATCACT------TATATAAAAAATCTCAGTTATA-TTT-GTTTACCAGCAGCATTAAATCTTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGAC-GTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGGCACTATTTAAAACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTGTGTAAATAAAAC-TAATTATTCACT------AAAATAACACA--GCAATTAAA-TTTGGCTTACCAGCTCCATTGAACCCACCAGA------------------------ATCTTCACAGATTGGTAATGGTGATCTCGGCC-TTTTTGCAGTTTTCTGAAAAGTCTCACCTATCTGTGCATTGTTTTGGACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGTGTAAATAAAAT-CAATTACTCACA------AAAATAACACATAACAATTAAA-TTTAGCTTACCAGCTCCATTGAAACCATCAGAAATTGGAGGAGATGGGCACGCCGAATCTTCAACGATTGGTAATGGTGATCGCTGCC-TTTTCGGAGTTTTCTGGGAAGTCTTAGCTTCCTGTGCATTGTTT----------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGAGTAAATAAAAC-TACTTATTCACA------AAAATACCACATAGCAATTAAA-TTTAGCTTACCAGCTCCATTGAACCCACCAGAAGTTGGCGGAGAT------GCCGAATCTTCAATGATTGGTAATGGTGATCGCGGCC-TTTTTGGAGTTTTCTGGAAAGTCTCAGCTTCCTGTGCATTGTTTGGGACATTTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCATATATA----AAT-TATTAATCACT------TATATAAAAAATCTCAGTTATA-TT--GTTTACCAGCAGCATTAAATCCTCCAGAATTTGGTAAATATTCGCATCCCGAATCTTCTATAGTTGGCAATGGCGATCGAGGACGTTTTTGTAGCCTTTCCAGTAGACTTAGGATCCTGGTCACTATTTAAAAAATTTT	Size	Hit Count	Total Norm	Total
No Reads

dpe_237

scaffold_133:14368-14426 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.3	-13.2	-13.2