ID:

dpe_230

 Coordinate:

scaffold_72:212342-212414 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.8 -36.8 -36.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BilboLINELOA+
mature
  1. dpe_230  scaffold_72:212343-212365 -
  2. scaffold_1168:4417-4439 -
  3. scaffold_30:945346-945368 +
  4. scaffold_9061:537-559 -
star

Sense Strand Reads

CGGCATCTGGATCGTCCTCGACTTCCTCGTGGCAGCACATCGTCTCGAAGTCGCATCCCAGCGTGCCATCGGTGGAGTAGCCCTCTGGGTCTGACTCCGTGTGATCGTCGGGTGCTTCGATTTCCGAGGCAGCGCCCTGCTCGACTGGCTTGTCGACAGGACGTGCCCCGGCC
****************************************.((((((((((((((.(((.(((....((((.(((((((((((...))).)).))))))..))))))).))))))...))))).)))))).......************************************ 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 M021
embryo
 V050
head
 V111
male body		 V057
head
...................................................................................................TGTGATCGTCGGGTGCTTCGATT................................................... 23 0 4 36.50 146 136 9 1 0 0 0
.....TCTGGATCGTCCTCGACTTCCTCGTGG............................................................................................................................................. 27 0 12 5.58 67 66 1 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCTCG................................................................................................................................................ 24 0 16 2.38 38 38 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCTCGTG.............................................................................................................................................. 26 0 12 2.17 26 25 0 1 0 0 0
....................................................................................................GTGATCGTCGGGTGCTTCGATT................................................... 22 0 4 2.00 8 8 0 0 0 0 0
...................................................................................................TGTGATCGACGGGTGCTTCGATT................................................... 23 1 4 1.25 5 5 0 0 0 0 0
...................................................................................................TGTGATCGGCGGGTGCTTCGATT................................................... 23 1 4 1.25 5 5 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCTCGT............................................................................................................................................... 25 0 16 1.00 16 15 1 0 0 0 0
...................................................................................................TGTGATCGTCGGGTGCTTCGATTT.................................................. 24 0 4 1.00 4 4 0 0 0 0 0
...........................CGAGGCAGCACGTGGTCTCGA............................................................................................................................. 21 3 1 1.00 1 0 0 0 1 0 0
.......................................................TCCCAGCGTGCCATCGGTGGAGTAG............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................GGCAGCACATCGTCTCGAAGTCGC....................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................TCGCATCCCAGCGTGCCATCGGTG................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................TGGGTCTGACTCCGTGTGATCGTCG............................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGTGATCGTCGGGTGCTTCGA..................................................... 21 0 20 0.95 19 19 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCC................................................................................................................................................... 21 0 16 0.75 12 5 2 5 0 0 0
...................................................................................................TGTGATCGTCGGGTGCTTCGATTTC................................................. 25 0 4 0.75 3 3 0 0 0 0 0
......CTGGATCGTCCTCGACTTCCTCGTGG............................................................................................................................................. 26 0 12 0.58 7 6 0 1 0 0 0
...............................................................................................TCCGTGTGATCGTCGGGTGCTT........................................................ 22 0 4 0.50 2 2 0 0 0 0 0
........................................................TCCAGCGTGCCATCGGAGGAGTAG............................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
.....................CTTCCTCGTGGCGGCACATCG................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................CGTGTGATCGTCGGGTGCTTCGAT.................................................... 24 0 4 0.50 2 2 0 0 0 0 0
.......................................................TCCCAGCGTGCCATCGGAGGAGT............................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
...CATCTGGATCGTCCTCGACTTCCTCG................................................................................................................................................ 26 0 14 0.36 5 3 0 2 0 0 0
...CATCTGGATCGTCCTCGACTTCCT.................................................................................................................................................. 24 0 14 0.36 5 5 0 0 0 0 0
......................................................................................................................................................TGTCGACAGGACGTGCCCCGG.. 21 0 20 0.35 7 5 1 0 1 0 0
......CTGGATCGTCCTCGACTTCCTCGTG.............................................................................................................................................. 25 0 12 0.33 4 4 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCT.................................................................................................................................................. 22 0 16 0.31 5 4 0 1 0 0 0
...................................................................................................TGTGATCGTCGGGTGCTTCGAGT................................................... 23 1 4 0.25 1 1 0 0 0 0 0
...................................................................................................GGTGATCGTCGGGTGCTTCGATT................................................... 23 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................GTGATCGTCGGGTGCTTCGATTTCC................................................ 25 0 4 0.25 1 1 0 0 0 0 0
...................................................................................................TGTGATCGTCGGGTGCCTCGATT................................................... 23 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................GTGATCGTCGGGTGCTTCGATTA.................................................. 23 1 4 0.25 1 1 0 0 0 0 0
...............................................................................................TCCGTGTGATCGTCGGGTGCTTCGAT.................................................... 26 0 4 0.25 1 1 0 0 0 0 0
...................................................................................................TGTGATCGCCGGGTGCTTCGATT................................................... 23 1 4 0.25 1 1 0 0 0 0 0
...CATCTGGATCGTCCTCGACTTCC................................................................................................................................................... 23 0 14 0.21 3 3 0 0 0 0 0
...................................................................................................TGTGATCGTCGGGTGCTTCGATTTA................................................. 25 1 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................................TGTCGACAGGACGTGCCCCGGCC 23 0 20 0.20 4 4 0 0 0 0 0
.....................................................................................TGGGTCTGACTCCGTATGATCGTCG............................................................... 25 1 5 0.20 1 1 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTC.................................................................................................................................................... 20 0 16 0.19 3 1 2 0 0 0 0
......CTGGATCGTCCTCGACTTCCTCG................................................................................................................................................ 23 0 16 0.19 3 3 0 0 0 0 0
...................................................................................................TCTGATCGTCGGGTGCTTCGATT................................................... 23 1 6 0.17 1 0 0 1 0 0 0
...................................................................................................TGTGATCGTCGGGTACTTCGATT................................................... 23 1 6 0.17 1 0 0 0 0 1 0
...................................................................................................TGTGATCGTCGGGTGCTTCGAAT................................................... 23 1 7 0.14 1 1 0 0 0 0 0
.......................................................................................................ATCGTCGGGTGCTTCGATT................................................... 19 0 7 0.14 1 1 0 0 0 0 0
........................................................................................................TCGTCGGGTGCTTCGATTTCCGAGG............................................ 25 0 7 0.14 1 1 0 0 0 0 0
CGGCATCTGGATCGTCCTCGAC....................................................................................................................................................... 22 0 15 0.13 2 1 0 1 0 0 0
.....TCTGGATCGTCCTCGACTTCCTC................................................................................................................................................. 23 0 16 0.13 2 2 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCTCGC............................................................................................................................................... 25 1 16 0.13 2 2 0 0 0 0 0
......................................................................................................................................................TGTCGACAGGACGTGCCCCG... 20 0 20 0.10 2 2 0 0 0 0 0
...............................................................TGCCATCGGTGGAGTAGCCCTCTGGG.................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................GCTCGACTGGCTTGTCGACAGGACG.......... 25 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................................................TGCTCGACTGGCTTGTCGACA............... 21 0 20 0.10 2 2 0 0 0 0 0
.....GCTGGATCGTCCTCGACTTCCTCGTG.............................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCTAGTG.............................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0 0
......CTGGATCGGCCTCGACTTCCTCGTGG............................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0 0
.....TCTGGATCGTCCTCGACTTCCTCTTG.............................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0 0
.....TCTGGATCCTCCTCGACTTCCTCGTGG............................................................................................................................................. 27 1 13 0.08 1 1 0 0 0 0 0
...CATCTGGATCGTCCTCGACTTCCTC................................................................................................................................................. 25 0 14 0.07 1 0 0 1 0 0 0
CGGCATCTGGATCGTCCTCGACT...................................................................................................................................................... 23 0 14 0.07 1 0 0 1 0 0 0
...CATCTGGATCGTCCTCGACTTC.................................................................................................................................................... 22 0 14 0.07 1 1 0 0 0 0 0
...CATCTGGATCGTCCTCGACTT..................................................................................................................................................... 21 0 14 0.07 1 1 0 0 0 0 0
....ATCTGGATCGTCCTCGACT...................................................................................................................................................... 19 0 15 0.07 1 0 0 1 0 0 0
...CATCTGGATCGTCCTCGAC....................................................................................................................................................... 19 0 15 0.07 1 1 0 0 0 0 0
.GGCATCTGGATCGTCCTCGAC....................................................................................................................................................... 21 0 15 0.07 1 0 0 1 0 0 0
....ATCTGGATCGTCCTCGACTTCCT.................................................................................................................................................. 23 0 15 0.07 1 1 0 0 0 0 0
.....TCTGGATCGTCCTCGACTT..................................................................................................................................................... 19 0 16 0.06 1 1 0 0 0 0 0
.....TCTGTATCGTCCTCGACTTCCTC................................................................................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0
.......TCGATCGTCCTCGACTTCCT.................................................................................................................................................. 20 1 16 0.06 1 1 0 0 0 0 0
......CTGGATCGTCCTCGACTTCCTC................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0
......CTGGATCGTCCTCGACTTCC................................................................................................................................................... 20 0 16 0.06 1 0 0 1 0 0 0
......CTGGATCGGCCTCGACTTCCTCG................................................................................................................................................ 23 1 16 0.06 1 1 0 0 0 0 0
......CTGGATCGGCCTCGACTTCCT.................................................................................................................................................. 21 1 16 0.06 1 1 0 0 0 0 0
.....TCTGGATCGTCCTCGACT...................................................................................................................................................... 18 0 16 0.06 1 1 0 0 0 0 0
.......TGGATCGTCCTCGACTTCCTCG................................................................................................................................................ 22 0 16 0.06 1 1 0 0 0 0 0
...CATCTGGATCGTCCTCGACA...................................................................................................................................................... 20 1 17 0.06 1 1 0 0 0 0 0
............................................................................................................................................TCGACTGGCTTGTCGACAGGACG.......... 23 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................GTCGACAGGACGTGCCCCGG.. 20 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TTGTCGACAGGACGTGCCCCGG.. 22 0 20 0.05 1 1 0 0 0 0 0
......................................................AGCCGAGCGTGCCATCTGT.................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.................................................................................................................................................TGGCTTGTCGACAGGACGTGCCCCGG.. 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................TGAGATCGTCGGGAGCTTCGTT.................................................... 22 3 20 0.05 1 0 1 0 0 0 0
...............................................................TGCCATCGGTGGAGTAGCCCTCTGG..................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................TGGCTTGTCGACAGGACGT......... 19 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................TGTCGACAAGACGTGCCCCGG.. 21 1 20 0.05 1 1 0 0 0 0 0
.........................................................................GGAGTAGCCCTCTTGGTCTG................................................................................ 20 1 20 0.05 1 0 0 0 0 1 0
...................................................................................................TGTGATCGTCGGGGGCTTCGAT.................................................... 22 1 20 0.05 1 0 0 1 0 0 0
...............................................................TGCCATCGGTGGAGTAGCC........................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0
......................................................................................................................................................TGTCGACAGGACGTGCCCC.... 19 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................TGGCTTGTCGACAGGACGTGCCCC.... 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................GTCGACAGGACGTGCCCCGGCC 22 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................TGTCGACAGGACGTGCCCCGGC. 22 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................TGTGATCGTCGGGTGCTTCGAT.................................................... 22 0 20 0.05 1 0 0 0 0 1 0
...................................................................................................TGTGATCGTCGGGTGCTT........................................................ 18 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................GTCGACAGGACGTGCCCCGGC. 21 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GCCGTAGACCTAGCAGGAGCTGAAGGAGCACCGTCGTGTAGCAGAGCTTCAGCGTAGGGTCGCACGGTAGCCACCTCATCGGGAGACCCAGACTGAGGCACACTAGCAGCCCACGAAGCTAAAGGCTCCGTCGCGGGACGAGCTGACCGAACAGCTGTCCTGCACGGGGCCGG
************************************.((((((((((((((.(((.(((....((((.(((((((((((...))).)).))))))..))))))).))))))...))))).)))))).......**************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V057
head
 M042
female body
...............................................................................................................................CCGTCGCGGGACGAGGTCA........................... 19 2 3 0.67 2 0 2 0
.....................GAAGGAGCACCGTCGTGTAGC................................................................................................................................... 21 0 2 0.50 1 1 0 0
...............GGAGCTGAAGGAGCACCGT........................................................................................................................................... 19 0 20 0.20 4 3 0 1
....................................................................................GACCCAGTCTGAGGCACACAC.................................................................... 21 3 6 0.17 1 0 0 1
.............................................................................................................CCCACGAAGCTAAAGGCTCCGTCG........................................ 24 0 7 0.14 1 0 0 1
.............................................................................................................CCCACGAAGCTAAAGGCTCCGTC......................................... 23 0 7 0.14 1 0 0 1
........CCTAGCAGGAGCTGAAGGAG................................................................................................................................................. 20 0 20 0.10 2 2 0 0
.CCGTAGACCTAGCAGGAGCT........................................................................................................................................................ 20 0 15 0.07 1 1 0 0
.........CTAGCAGGAGCTGAAGGAGCACCCT........................................................................................................................................... 25 1 20 0.05 1 1 0 0
............GCAGGAGCTGAAGGAGCACCGT........................................................................................................................................... 22 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_72:212292-212464 - dpe_230 CGGCATCTGGATCGTCCTCGACTTCCTCGTG--------GCAG-CACATCGTCTCG-AAGTCGCATCCCAG----------------CGTGCCATCGGTGGAGTAGCCCTCTGGGTCTGACTCCGTGTGA---TCGTCGGGTGCTTCGATTTCCGAGGCAGCG---------CCCTGCTCGACTGGCTT------GTCGACAGGACGTGCCCCGG-CC
dp5 4_group2:1063190-1063362 + CGGCATCTAGATCGTCCTCGACTTCCTCGTG--------GCAG-CACATCGTCTCG-AAGTCGCATCCCAG----------------CGTGCCACCGGTGGAGTAGCCCTCTGGGTCTGTCTCCGTGTGA---TCGTCGGGTGCTTCGATTTTCGAAGCAGCG---------CCCTGCTCGACTGGCTT------GTCGACAGGACGCGCCCCGG-CC
droWil2 scf2_1100000004933:166700-166723 + TGACATTTAAACTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAA-TT
droMoj3 scaffold_6500:17457485-17457490 - CCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
droGri2 scaffold_15057:5562-5721 + AT----------CGTCCTCGTCTAACTCGTG--------A----CACAAGGCCTCA-AGGCCCCGAGTCAG-------------AGTCGACATGTCCGACGTGTAGCCAGG---------CTCCAGCTCC---TCATCGGTTGCTCCGATCTCCGCAGGAGGA---------GCCTGTTCGGCTGTGTTTTTGCAGACAACAGGGTCTCCTCCGG-CC
droAna3 scaffold_13260:1017673-1017827 + TGGCCTCTTCGTCATCGGAGAGGTCTTCG---TCGATGACTCGACTC--------------------GCAGCCATCCTGCGGAGGAGTAACTCATGGGTTCTATATCCTTC---------TTCGAC---------ATCACAAAACTCTATCTCTGAGGC---------------CAGTTCCTCTTGAGT------AGTGGCTGGGTTTGCTCTAT-CA
droBip1 scf7180000396659:9631-9780 + CCGCTTCTTCGTCGACGGAGATGTCATCG---TCATCCATTCGACTT-------GCT-GCATGCAACG-------------CAACAAAGAGGCATCAGTGTTGTAGCCATC---------CTTTG---------CATCTGAGGCCTCGATGTTGGAGGCAAGT---------------TTCCCTGGGATCTT----------TCATATTTTTCCG-TC
droKik1 scf7180000302167:37-56 - CGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACGTGCGCCAG-TC
droEle1 scf7180000490844:10159-10335 + CGGCTCCCTCATCGTCACAGACGTCGTCGTTTCCTACAGCCGGCTTCATCGCCTGCA-AGACTCTGCTTAA----------------CGATGCGTCGGTGGAAAAGCCATC---------CTCCGACTAGTCGTCCCCGGGAGCCTCAAGCTCTTCCAGACAA---------ACCTGCTCGGCTGGGTT------ACCCGGTCGGCAACCTGCTTCGC
droRho1 scf7180000777935:3660-3826 + CGGCCTCCGAATCGCTCAGGTCCACTTCA---TCGATTGCCAGTCCCAGCGCTCGCA-TCTCTCTGCTCAG----------------CGACGAGTCGGTTGAGTAGCCGTC---------CTCCGGCA------CACCAGGGGCCTCCACTTCCTCCGCAAGC---------ACCTGCTCAGCTGGGTT------GCCGGCAGGACTTCCCGAGG-AA
droBia1 scf7180000302283:55208-55367 + CGGCCTCTTTCGTATTCCTCAGATCCACGTCTTCGATTGCCGTTCCAA----------GCGCTCG----------------CATCATCGACGAATCAGTCGATTAGCCGTC---------CTCCGGCT------CACCAAATGCCTTCAATTCCTCAGCAAGC---------ACCTGGTCAAATGGGTT------GCCGGCAGAGCTTC-CAGGG-AC
droTak1 scf7180000412793:9062-9228 + CGGCCTCCGAGCCGCTCAGGTCCACTTCA---TCGATTGCCGGTCCCATCGCTCGCA-TCTCTCTACTCAG----------------CGAAGAGTCGGTTGAGTAGCCGTC---------CTCCGGCA------TGCCAGGGGCCTCCACTTCCTCCGCAAGC---------ACCTGCTCAGCTGGGTT------GCCGGCAGGACTTCCCGAGG-AA
droSim2 node_83424:13-107 + CA--------------------------------------------------------------------------------------------TCAGTCGAGTAGCCATC---------CTCTTT---------TTCCTAAGCCTCGATCTCGGAGGCAATCTCCGCGATCA------------CTCCTCCACCGCCTTCCTGATCCTCCTTGG-CG
droSec2 scaffold_26:152618-152642 - GGGCATCCGACGCGTCCTCGGCTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2L_random_001:272581-272738 - CGGCTCCCTCCTCGTCCGATGTGTCTAGG---TCCGTCATCGGACCCATGTTC-GCAAGGCTGCG----------------GAGGATTGAGGCATCGGTCGAGTAGCCGTC---------CTCGGT---------TTCCGATGCCTCGATCTCGGAGGCAATCTCCTCGATCA------------CTCCTCCATT-------GA--ATTCCTGGT-CC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CGGCATCTGGATCGTCCTCGACTTCCTCGTG--------GCAG-CACATCGTCTCG-AAGTCGCATCCCAG----------------CGTGCCATCGGTGGAGTAGCCCTCTGGGTCTGACTCCGTGTGA---TCGTCGGGTGCTTCGATTTCCGAGGCAGCG---------CCCTGCTCGACTGGCTT------GTCGACAGGACGTGCCCCGG-CCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATT...................................................................23436.5014611369000
.....TCTGGATCGTCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................27125.58670661000
.....TCTGGATCGTCCTCGACTTCCTCG.............................................................................................................................................................................................24162.38380380000
.....TCTGGATCGTCCTCGACTTCCTCGTG--------...................................................................................................................................................................................26122.17261250000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGATT...................................................................2242.008080000
.....TCTGGATCGTCCTCGACTTCCTCGT............................................................................................................................................................................................25161.00160151000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATTT..................................................................2441.004040000
.................................................................TCCCAG----------------CGTGCCATCGGTGGAGTAG................................................................................................................2511.001010000
..............................G--------GCAG-CACATCGTCTCG-AAGTCGC..........................................................................................................................................................2411.001010000
............................................................TCGCATCCCAG----------------CGTGCCATCGGTG......................................................................................................................2411.001010000
...............................................................................................................TGGGTCTGACTCCGTGTGA---TCGTCG...............................................................................2511.001010000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGA.....................................................................21200.95190190000
.....TCTGGATCGTCCTCGACTTCC................................................................................................................................................................................................21160.7512552000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATTTC.................................................................2540.753030000
......CTGGATCGTCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................26120.587160000
.........................................................................................................................TCCGTGTGA---TCGTCGGGTGCTT........................................................................2240.502020000
...........................................................................................................................CGTGTGA---TCGTCGGGTGCTTCGAT....................................................................2440.502020000
...CATCTGGATCGTCCTCGACTTCCTCG.............................................................................................................................................................................................26140.365230000
...CATCTGGATCGTCCTCGACTTCCT...............................................................................................................................................................................................24140.365050000
............................................................................................................................................................................................T------GTCGACAGGACGTGCCCCGG-..21200.357051100
......CTGGATCGTCCTCGACTTCCTCGTG--------...................................................................................................................................................................................25120.334040000
.....TCTGGATCGTCCTCGACTTCCT...............................................................................................................................................................................................22160.315140000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGATTTCC................................................................2540.251010000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGATTA..................................................................2340.251010000
.........................................................................................................................TCCGTGTGA---TCGTCGGGTGCTTCGAT....................................................................2640.251010000
...CATCTGGATCGTCCTCGACTTCC................................................................................................................................................................................................23140.213030000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATTTA.................................................................2550.201010000
............................................................................................................................................................................................T------GTCGACAGGACGTGCCCCGG-CC23200.204040000
.....TCTGGATCGTCCTCGACTTC.................................................................................................................................................................................................20160.193012000
......CTGGATCGTCCTCGACTTCCTCG.............................................................................................................................................................................................23160.193030000
.................................................................................................................................A---TCGTCGGGTGCTTCGATT...................................................................1970.141010000
.....................................................................................................................................TCGTCGGGTGCTTCGATTTCCGAGG............................................................2570.141010000
CGGCATCTGGATCGTCCTCGAC....................................................................................................................................................................................................22150.132110000
.....TCTGGATCGTCCTCGACTTCCTC..............................................................................................................................................................................................23160.132020000
.....TCTGGATCGTCCTCGACTTCCTCGC............................................................................................................................................................................................25160.132020000
............................................................................................................................................................................................T------GTCGACAGGACGTGCCCCG....20200.102020000
.........................................................................................TGCCATCGGTGGAGTAGCCCTCTGGG.......................................................................................................26200.102020000
................................................................................................................................................................................GCTCGACTGGCTT------GTCGACAGGACG...........25200.102020000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACA................21200.102020000
...CATCTGGATCGTCCTCGACTTCCTC..............................................................................................................................................................................................25140.071100000
CGGCATCTGGATCGTCCTCGACT...................................................................................................................................................................................................23140.071100000
...CATCTGGATCGTCCTCGACTTC.................................................................................................................................................................................................22140.071010000
...CATCTGGATCGTCCTCGACTT..................................................................................................................................................................................................21140.071010000
....ATCTGGATCGTCCTCGACT...................................................................................................................................................................................................19150.071100000
...CATCTGGATCGTCCTCGAC....................................................................................................................................................................................................19150.071010000
.GGCATCTGGATCGTCCTCGAC....................................................................................................................................................................................................21150.071100000
....ATCTGGATCGTCCTCGACTTCCT...............................................................................................................................................................................................23150.071010000
.....TCTGGATCGTCCTCGACTT..................................................................................................................................................................................................19160.061010000
......CTGGATCGTCCTCGACTTCCTC..............................................................................................................................................................................................22160.061010000
......CTGGATCGTCCTCGACTTCC................................................................................................................................................................................................20160.061100000
.....TCTGGATCGTCCTCGACT...................................................................................................................................................................................................18160.061010000
.......TGGATCGTCCTCGACTTCCTCG.............................................................................................................................................................................................22160.061010000
...CATCTGGATCGTCCTCGACA...................................................................................................................................................................................................20170.061010000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACG...........23200.051010000
...................................................................................................................................................................................................GTCGACAGGACGTGCCCCGG-..20200.051010000
...........................................................................................................................................................................................TT------GTCGACAGGACGTGCCCCGG-..22200.051010000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGTGCCCCGG-..26200.051010000
.........................................................................................TGCCATCGGTGGAGTAGCCCTCTGG........................................................................................................25200.051100000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGT..........19200.051010000
.........................................................................................TGCCATCGGTGGAGTAGCC..............................................................................................................19200.051000001
............................................................................................................................................................................................T------GTCGACAGGACGTGCCCC.....19200.051010000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGTGCCCC.....24200.051010000
...................................................................................................................................................................................................GTCGACAGGACGTGCCCCGG-CC22200.051010000
............................................................................................................................................................................................T------GTCGACAGGACGTGCCCCGG-C.22200.051001000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGAT....................................................................22200.051000001
.............................................................................................................................TGTGA---TCGTCGGGTGCTT........................................................................18200.051010000
...................................................................................................................................................................................................GTCGACAGGACGTGCCCCGG-C.21200.051010000
dp5
CGGCATCTAGATCGTCCTCGACTTCCTCGTG--------GCAG-CACATCGTCTCG-AAGTCGCATCCCAG----------------CGTGCCACCGGTGGAGTAGCCCTCTGGGTCTGTCTCCGTGTGA---TCGTCGGGTGCTTCGATTTTCGAAGCAGCG---------CCCTGCTCGACTGGCTT------GTCGACAGGACGCGCCCCGG-CCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGAT....................................................................221516.60249016310210362710
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATT...................................................................23210.502101200300600
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGA.....................................................................21156.47970580080171310
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGACG...........26204.959909800100000
.................TCGACTTCCTCGTG--------GCAG-CACATCG.......................................................................................................................................................................2513.0030300000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATTT..................................................................2422.5050300100100
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGG..............23202.004004000000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATA...................................................................23151.802701710101610
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGAC............25201.503003000000000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGCGCCCCGG-..2621.5030300000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATTA..................................................................2421.5030300000000
...........TCGTCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................21181.442602600000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCG......................................................................20151.402101900200000
............CGTCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................20181.222202100100000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGA.............24201.202402400000000
............CGTCCTCGACTTCCTCGTG--------GC.................................................................................................................................................................................21161.191901900000000
..............................................................................................................................................................CAGCG---------CCCTGCTCGACTGGCT..............................2111.0010100000000
......................................................................................................................................................................................CTGGCTT------GTCGACAGGACGCGCCCCGG-..2711.0010100000000
.....................CTTCCTCGTG--------GCAG-CACATCG.......................................................................................................................................................................2111.0010100000000
.................TCGACTTCCTCGTG--------GCAG-CACATC........................................................................................................................................................................2411.0010100000000
.......................TCCTCGTG--------GCAG-CACATCGTCTCG-.................................................................................................................................................................2411.0010100000000
..................CGACTTCCTCGTG--------GCAG-CACATCG.......................................................................................................................................................................2411.0010100000000
...............................................................................................................TGGGTCTGTCTCCGTGTGA---TCGT.................................................................................2331.0030000000300
.....TCTAGATCGTCCTCGACT...................................................................................................................................................................................................1811.0010000000100
............................................................................................................................................................................................T------GTCGACAGGACGCGCCCCGT-..2121.0020100100000
......................................................................................................................................................TTTCGAAGCAGCG---------CCCTGC........................................1911.0010100000000
............................................................................................................................................................................................T------GTCGACAGGACGCGCCCCGG-..2121.0020200000000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACA................21200.901801800000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGAA....................................................................22150.80120700100400
.................................................................................................GTGGAGTAGCCCTCTGGGTCT....................................................................................................21150.801201000002000
..................................................................................................TGGAGTAGCCCTCTGGGTCT....................................................................................................20150.731101100000000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGCGC........2130.6720100100000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGCG.........2030.6720100100000
............................................................................................................................GTGTGA---TCGTCGGGTGCTTCG......................................................................21150.67100900001000
.............GTCCTCGACTTCCTCGTG--------GC.................................................................................................................................................................................20180.611101100000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGT.....................................................................21150.6090600001200
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGAT....................................................................21150.5380800000000
............................................................................................................................GTGTGA---TCGTCGGGTGCTTCGAT....................................................................23150.5380700001000
...........TCGTCCTCGACTTCCTCGTG--------...................................................................................................................................................................................20180.5090900000000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGACGCA.........2820.5010100000000
.................................................................................................................................................................................CTCGACTGGCTT------GTCGACAGGACGCGC........2720.5010100000000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGATTA..................................................................2320.5010100000000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACGCGC........2620.5010100000000
............................................................................................................................................................................................T------GTCGACAGGACGCGCCCCG....2020.5010100000000
....................................................................................................................................................................................GACTGGCTT------GTCGACAGGACGCGCCC......2620.5010100000000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGACGCG.........2820.5010100000000
...........................................................................................................................................................................................TT------GTCGACAGGACGCGCCCCG....2120.5010100000000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACGCGCCC......2820.5010100000000
...................................................................................................................................................................................CGACTGGCTT------GTCGACAGGACGCG.........2420.5010100000000
............................................................................................................................GTGTGA---TCGTCGGGTGCTTCGATT...................................................................2420.5010100000000
.................................................................................................GTGGAGTAGCCCTCTGGGTC.....................................................................................................20160.5080600010010
........................................................................................................................................................................................GGCTT------GTCGACAGGACGCGCCCCGG-..2520.5010100000000
.......................................................................................................................................................................................TGGCTT------GTCGACAGGACGCGCCCCG....2520.5010100000000
............................................................................................................................................................................................T------GTCGACAGGACGCGCCCCGG-CC2320.5010100000000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACGCG.........2520.5010100000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATTTAAA...............................................................2720.5010100000000
....................................................................................................................................................................................GACTGGCTT------GTCGACAGGACGCGC........2420.5010100000000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACGC..........2420.5010100000000
...........................................................................................................................................................................................TT------GTCGACAGGACGCGCCCCGG-CC2420.5010100000000
...................................................................................................................TCTGTCTCCGTGTGA---TCGTCGGGTGCTT........................................................................2820.5010000001000
............................................................................................................................................................................................T------GTCGACAGGACGCGCCCC.....1920.5010100000000
............................................................................................................................GTGTGA---TCGTCGGGTGCTTC.......................................................................20150.4770400003000
..........ATCGTCCTCGACTTCCTCGTG--------...................................................................................................................................................................................21180.4480800000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGAAAA..................................................................24150.4060400101000
.........GATCGTCCTCGACTTCCTCGT............................................................................................................................................................................................21190.3770700000000
.................................................................................................................................................................................CTCGACTGGCTT------GTCGACAGGACG...........24200.3570700000000
...................................................................................................................TCTGTCTCCGTGTGA---TCGTCGGG.............................................................................2330.3310100000000
..........................................................................................................................................................................................CTT------GTCGACAGGACGCGCCC......2030.3310000100000
...............................................................................................................TGGGTCTGTCTCCGTGTGA---TCGTCGG..............................................................................2630.3310100000000
...............................................................................................................TGGGTCTGTCTCCGTGTGA---TCGTCGGG.............................................................................2730.3310000001000
............................................................................................................................................................................................T------GTCGACAGGACGCGCCC......1830.3310100000000
..........ATCGTCCTCGACTTCCTCGT............................................................................................................................................................................................20190.3260600000000
...........TCGTCCTCGACTTCCTCGTG--------GC.................................................................................................................................................................................22160.3150500000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTC.......................................................................19150.2740400000000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGA.....................................................................20150.2740400000000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCG......................................................................19150.2740300001000
.............................................................................................................................................................................CCTGCTCGACTGGCTT------GTCG...................20190.2650500000000
................................................................................................................................................................................GCTCGACTGGCTT------GTCGACAGG..............22200.2550500000000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACGCGCA.......2740.2510100000000
............................................................................................................................GTGTGA---TCGTCGGGTGCTT........................................................................19160.2540200002000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGAC.................20200.2550500000000
...............................................................................................CGGTGGAGTAGCCCTCTGGGTCTGT..................................................................................................2590.2220000000200
............CGTCCTCGACTTCCTCGTG--------...................................................................................................................................................................................19180.2240400000000
..............TCCTCGACTTCCTCGTG--------GCA................................................................................................................................................................................20180.2240400000000
.........GATCGTCCTCGACTTCCTCG.............................................................................................................................................................................................20190.2140400000000
................................................................................................................................................................................GCTCGACTGGCTT------GTCGACAGGACG...........25200.2040400000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATAAA.................................................................25150.2030200001000
............CGTCCTCGACTTCCTCGTG--------GCA................................................................................................................................................................................22160.1930300000000
.......................................................................................................TAGCCCTCTGGGTCTGTCTCC..............................................................................................2160.1710100000000
.......................................................................................................TAGCCCTCTGGGTCTGTCTCCG.............................................................................................2260.1710100000000
.............................................................................................................................................................................CCTGCTCGACTGGCTT------GTC....................19200.1530300000000
...................................................................................................................................................................................CGACTGGCTT------GTCGACAGGA.............20200.1530300000000
.................................................................................................................................................................................CTCGACTGGCTT------GTCGACAGG..............21200.1530300000000
...............................................................................................................................TGA---TCGTCGGGTGCTTCGAT....................................................................20200.1530100002000
................................................................................................................................................................................GCTCGACTGGCTT------GTCGACAGGA.............23200.1530300000000
............................................................................................................................GTGTGA---TCGTCGGGTGCTTCGA.....................................................................22150.1320200000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCA......................................................................20150.1320200000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGAAA...................................................................23150.1320100001000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATAA..................................................................24150.1320000100100
.........GATCGTCCTCGACTTCCTCGTG--------GC.................................................................................................................................................................................24160.1320200000000
..................................................................................................TGGAGTAGCCCTCTGGGTC.....................................................................................................19160.1320200000000
.......................................................................................................TAGCCCTCTGGGTCTGTCTC...............................................................................................2080.1310100000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTT........................................................................18160.1320100000100
..................................................................................................TGGAGTAGCCCTCTGGGTCTGTCTC...............................................................................................2580.1310000100000
.................................................................................................GTGGAGTAGCCCTCTGGGT......................................................................................................19160.1320200000000
...............................................................................................CGGTGGAGTAGCCCTCTGG........................................................................................................19160.1320200000000
..............................................................................................................................................................................CTGCTCGACTGGCTT------GTCGAC.................21170.1220200000000
.............................................................................................................................................................................CCTGCTCGACTGGCTT------GTCGAC.................22170.1220200000000
............................................................................................................................GTGTGA---TCGTCGGGTGCT.........................................................................18170.1220200000000
..................................................................................................TGGAGTAGCCCTCTGGGTCTG...................................................................................................2190.1110000100000
.............GTCCTCGACTTCCTCGTG--------GCA................................................................................................................................................................................21180.1120200000000
..................................................................................................TGGAGTAGCCCTCTGGGTCTGTC.................................................................................................2390.1110000100000
...............................................................................................CGGTGGAGTAGCCCTCTGGGTCTG...................................................................................................2490.1110100000000
.............................................................................................................................................................................CCTGCTCGACTGGCTT------GTCGA..................21190.1120200000000
..............................................................................................................................................................................CTGCTCGACTGGCTT------GTCGT..................20190.1120200000000
...............................................................................................................................TGA---TCGTCGGGTGCTTCGATA...................................................................21200.1020200000000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGACT...........26200.1020200000000
.....................................................................................................................................................................................ACTGGCTT------GTCGACAGGACG...........20200.1020200000000
...................................................................................................................................................................................CGACTGGCTT------GTCGACAGGAC............21200.1020200000000
...............................................................................................................................................................................TGCTCGACTGGCTT------GTCGACAGGAA............25200.1020200000000
....................................................................................................................................................................................GACTGGCTT------GTCGACAGGACG...........21200.1020200000000
..................................................................................................................................................................................TCGACTGGCTT------GTCGACAGGACG...........23200.1020200000000
..............TCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................18200.1020200000000
.............GTCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................19200.1020200000000
...................................................................................................GGAGTAGCCCTCTGGGTCT....................................................................................................19150.0710100000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCC......................................................................20150.0710100000000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCT......................................................................19150.0710100000000
.............................................................................................................................TGTGA---TCGTCGGGTGCTTCGATG...................................................................23150.0710100000000
..............................................................................................................................GTGA---TCGTCGGGTGCTTCGAA....................................................................21150.0710100000000
...............................................................................................CGGTGGAGTAGCCCTCTGGGT......................................................................................................21160.0610100000000
.........GATCGTCCTCGACTTCCTCGTG--------GCA................................................................................................................................................................................25160.0610100000000
...........TCGTCCTCGACTTCCTCGTG--------GCA................................................................................................................................................................................23160.0610100000000
................................................................................................GGTGGAGTAGCCCTCTGGG.......................................................................................................19160.0610100000000
...............................................................................................CGGTGGAGTAGCCCTCTGGG.......................................................................................................20160.0610100000000
................................................................................................GGTGGAGTAGCCCTCTGGGTC.....................................................................................................21160.0610100000000
...................................................................................................GGAGTAGCCCTCTGGGTC.....................................................................................................18160.0610100000000
..................CGACTTCCTCGTG--------GCAG-CACATCGC......................................................................................................................................................................25160.0610100000000
...............................................................................................CGGTGGAGTAGCCCTCTGGGTC.....................................................................................................22160.0610100000000
.........GATCGTCCTCGACTTCCTCGTG--------G..................................................................................................................................................................................23180.0610100000000
..............TCCTCGACTTCCTCGTG--------GC.................................................................................................................................................................................19180.0610100000000
..........ATCGTCCTCGACTTCCTCGTG--------T..................................................................................................................................................................................22180.0610100000000
...........TCGTCCTCGACTTCCTCGT............................................................................................................................................................................................19190.0510100000000
.............................................................................................................................................................................CCTGCTCGACTGGCTT------GTCGT..................21190.0510100000000
droWil2
TGACATTTAAACTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAA-TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
CCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AT----------CGTCCTCGTCTAACTCGTG--------A----CACAAGGCCTCA-AGGCCCCGAGTCAG-------------AGTCGACATGTCCGACGTGTAGCCAGG---------CTCCAGCTCC---TCATCGGTTGCTCCGATCTCCGCAGGAGGA---------GCCTGTTCGGCTGTGTTTTTGCAGACAACAGGGTCTCCTCCGG-CCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................TG--------A----CACAAGGCCTCA-AGGCCC...........................................................................................................................................................21200.05110
droAna3
TGGCCTCTTCGTCATCGGAGAGGTCTTCG---TCGATGACTCGACTC--------------------GCAGCCATCCTGCGGAGGAGTAACTCATGGGTTCTATATCCTTC---------TTCGAC---------ATCACAAAACTCTATCTCTGAGGC---------------CAGTTCCTCTTGAGT------AGTGGCTGGGTTTGCTCTAT-CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................CAGTTCCTCTTGAGT------AGTGG..................2040.251000001
droBip1
CCGCTTCTTCGTCGACGGAGATGTCATCG---TCATCCATTCGACTT-------GCT-GCATGCAACG-------------CAACAAAGAGGCATCAGTGTTGTAGCCATC---------CTTTG---------CATCTGAGGCCTCGATGTTGGAGGCAAGT---------------TTCCCTGGGATCTT----------TCATATTTTTCCG-TCSizeHit CountTotal NormTotal
No Reads
droKik1
CGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACGTGCGCCAG-TCSizeHit CountTotal NormTotal
No Reads
droEle1
CGGCTCCCTCATCGTCACAGACGTCGTCGTTTCCTACAGCCGGCTTCATCGCCTGCA-AGACTCTGCTTAA----------------CGATGCGTCGGTGGAAAAGCCATC---------CTCCGACTAGTCGTCCCCGGGAGCCTCAAGCTCTTCCAGACAA---------ACCTGCTCGGCTGGGTT------ACCCGGTCGGCAACCTGCTTCGCSizeHit CountTotal NormTotal
No Reads
droRho1
CGGCCTCCGAATCGCTCAGGTCCACTTCA---TCGATTGCCAGTCCCAGCGCTCGCA-TCTCTCTGCTCAG----------------CGACGAGTCGGTTGAGTAGCCGTC---------CTCCGGCA------CACCAGGGGCCTCCACTTCCTCCGCAAGC---------ACCTGCTCAGCTGGGTT------GCCGGCAGGACTTCCCGAGG-AASizeHit CountTotal NormTotal
No Reads
droBia1
CGGCCTCTTTCGTATTCCTCAGATCCACGTCTTCGATTGCCGTTCCAA----------GCGCTCG----------------CATCATCGACGAATCAGTCGATTAGCCGTC---------CTCCGGCT------CACCAAATGCCTTCAATTCCTCAGCAAGC---------ACCTGGTCAAATGGGTT------GCCGGCAGAGCTTC-CAGGG-ACSizeHit CountTotal NormTotal
No Reads
droTak1
CGGCCTCCGAGCCGCTCAGGTCCACTTCA---TCGATTGCCGGTCCCATCGCTCGCA-TCTCTCTACTCAG----------------CGAAGAGTCGGTTGAGTAGCCGTC---------CTCCGGCA------TGCCAGGGGCCTCCACTTCCTCCGCAAGC---------ACCTGCTCAGCTGGGTT------GCCGGCAGGACTTCCCGAGG-AASizeHit CountTotal NormTotal
No Reads
droSim2
CA--------------------------------------------------------------------------------------------TCAGTCGAGTAGCCATC---------CTCTTT---------TTCCTAAGCCTCGATCTCGGAGGCAATCTCCGCGATCA------------CTCCTCCACCGCCTTCCTGATCCTCCTTGG-CGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GGGCATCCGACGCGTCCTCGGCTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CGGCTCCCTCCTCGTCCGATGTGTCTAGG---TCCGTCATCGGACCCATGTTC-GCAAGGCTGCG----------------GAGGATTGAGGCATCGGTCGAGTAGCCGTC---------CTCGGT---------TTCCGATGCCTCGATCTCGGAGGCAATCTCCTCGATCA------------CTCCTCCATT-------GA--ATTCCTGGT-CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................TCGATCA------------CTCCTCCATT-------GA--ATTCCTGG....2727.0014013100000000
......................................................................................................................................................................TCGATCA------------CTCCTCCATT-------GA--ATTCCTG.....2620.50101000000000
...................TGTGTCTAGG---TCCGTCATC.................................................................................................................................................................................1920.50101000000000
....................................................................................................GAGTAGCCGTC---------CTCGGT---------TTCCGATGCC.........................................................................27200.35707000000000
.......................................TCGGACCCATGTTC-GCAAGGCTGCG----------------.........................................................................................................................................2530.33101000000000
....................................................................................................GAGTAGCCGTC---------CTCGGT---------TTCCGATGC..........................................................................26200.30605100000000
..................................................TTC-GCAAGGCTGCG----------------GAGGATTGAGGC.............................................................................................................................26200.25504100000000
....................................................................................................GAGTAGCCGTC---------CTCGGT---------TTCCGATG...........................................................................25200.25505000000000
..............................................................................................TCGGTCGAGTAGCCGTC---------CTCGGT---------T..................................................................................24200.25505000000000
.........................................................................................................................TCGGT---------TTCCGATGCCTCGATCTCGGA..............................................................26200.25505000000000
............................................................................................CATCGGTCGAGTAGCCGTC---------CTCGG.............................................................................................24200.20404000000000
.............................................................................................................TC---------CTCGGT---------TTCCGATGCCTCGATCT..................................................................25200.20403100000000
.......................................................................................TGAGGCATCGGTCGAGTAGCCGTC---------C.................................................................................................25200.20404000000000
...................................................................................GGATTGAGGCATCGGTCGAGTAGCC..............................................................................................................25200.20403100000000
.................................................................................GAGGATTGAGGCATCGGTCGAGT..................................................................................................................23200.15320000010000
..................................................TTC-GCAAGGCTGCG----------------GAGGATTGAGG..............................................................................................................................25200.15303000000000
.........................................................................................................................TCGGT---------TTCCGATGCCTCGATCTCGGAG.............................................................27200.15301000000002
........................................................................................................................................TCCGATGCCTCGATCTCGGAGGCAATC.......................................................27150.13202000000000
....TCCCTCCTCGTCCGATGTGTCTAGG---TCC.......................................................................................................................................................................................2890.11101000000000
............................................................................................CATCGGTCGAGTAGCCGTC---------CTCGGT---------...................................................................................25200.10202000000000
..................................................................................................TCGAGTAGCCGTC---------CTCGGT---------TTCCGA.............................................................................25200.10202000000000
...................................................................................GGATTGAGGCATCGGTCGAGTAGCCG.............................................................................................................26200.10201000010000
.......................................................................................TGAGGCATCGGTCGAGTAGCCGTC---------CT................................................................................................26200.10201000010000
.......................................................................................................TAGCCGTC---------CTCGGT---------TTCCGATGCCT........................................................................25200.10202000000000
.......................................................CAAGGCTGCG----------------GAGGATTGAGGCATC..........................................................................................................................25200.10200200000000
....................................................................................GATTGAGGCATCGGTCGAGTAGCCG.............................................................................................................25200.10202000000000
...................................................TC-GCAAGGCTGCG----------------GAGGATTGAGG..............................................................................................................................24200.10201100000000
.............................................................TGCG----------------GAGGATTGAGGCATCGGTCGAG...................................................................................................................26200.10202000000000
...................................................TC-GCAAGGCTGCG----------------GAGGATTGAGGC.............................................................................................................................25200.10202000000000
..........................................GACCCATGTTC-GCAAGGCTGCG----------------GA.......................................................................................................................................24200.10201100000000
.........................................GGACCCATGTTC-GCAAGGCTGCG----------------.........................................................................................................................................23130.08101000000000
...........TCGTCCGATGTGTCTAGG---TCCGTC....................................................................................................................................................................................24140.07100010000000
..............................................................................................................................................GCCTCGATCTCGGAGGCAATCTCCT...................................................25140.07101000000000
.....CCCTCCTCGTCCGATGTGTCTAGG---TC........................................................................................................................................................................................26140.07101000000000
....TCCCTCCTCGTCCGATGTGTCTAGG---..........................................................................................................................................................................................25140.07101000000000
...........TCGTCCGATGTGTCTAGG---TCCGTCA...................................................................................................................................................................................25140.07101000000000
.........................................................................................................................................CCGATGCCTCGATCTCGGAGGCAATC.......................................................26150.07101000000000
........................................................................................................................................TCCGATGCCTCGATCTCGGAGGCA..........................................................24170.06101000000000
.............................................................................................................................T---------TTCCGATGCCTCGATCTCGGAGGCA..........................................................26170.06101000000000
...................................................................................GGATTGAGGCATCGGTCGAGTAGC...............................................................................................................24200.05100100000000
..............................................................GCG----------------GAGGATTGAGGCATCGGTCGAG...................................................................................................................25200.05101000000000
.........................................................................................................GCCGTC---------CTCGGT---------TTCCGATGCCTCGA.....................................................................26200.05100000100000
.............................................CCATGTTC-GCAAGGCTGCG----------------GAG......................................................................................................................................22200.05101000000000
............................................................................................CATCGGTCGAGTAGCCGTC---------CTCG..............................................................................................23200.05101000000000
..............................................................................................................C---------CTCGGT---------TTCCGATGCCTCGATCT..................................................................24200.05101000000000
.............................................................................................................TC---------CTCGGT---------TTCCGATGCCTCGATCTCGG...............................................................28200.05101000000000
................................................TGTTC-GCAAGGCTGCG----------------GAGGAT...................................................................................................................................22200.05100100000000
......................................................GCAAGGCTGCG----------------GAGGATTGAGG..............................................................................................................................22200.05100010000000
..................................................................................AGGATTGAGGCATCGGTCGAGT..................................................................................................................22200.05100000010000
..........................................................................................................................................CGATGCCTCGATCTCGGA..............................................................18200.05110000000000
............................................................................................CATCGGTCGAGTAGCCGTC---------CTCGGT---------T..................................................................................26200.05101000000000
..........................................................................................................................CGGT---------TTCCGATGCCTCGATCTCGG...............................................................24200.05101000000000
....................................................................................GATTGAGGCATCGGTCGAGTAGCCGTC---------..................................................................................................27200.05101000000000
..............................................................GCG----------------GAGGATTGAGGCATCGGTCGA....................................................................................................................24200.05101000000000
.......................................................................................................TAGCCGTC---------CTCGGT---------TTCCGATGC..........................................................................23200.05101000000000
...............................................................CG----------------GAGGATTGAGGCATCGGTCGAG...................................................................................................................24200.05101000000000
....................................................C-GCAAGGCTGCG----------------GAGGATT..................................................................................................................................19200.05101000000000
..................................................................................................TCGAGTAGCCGTC---------CTCGGT---------TTCC...............................................................................23200.05101000000000
.............................................CCATGTTC-GCAAGGCTGCG----------------GAGG.....................................................................................................................................23200.05101000000000
.......................................................................................TGAGGCATCGGTCGAGTAGC...............................................................................................................20200.05101000000000
..........................................................................................................................CGGT---------TTCCGATGCCTCGATCT..................................................................21200.05101000000000
..............................................CATGTTC-GCAAGGCTGCG----------------GAG......................................................................................................................................21200.05101000000000
.......................................................................................TGAGGCATCGGTCGAGTAGCCGT............................................................................................................23200.05101000000000
........................................................AAGGCTGCG----------------GAGGATTGAGGCATCGGT.......................................................................................................................27200.05110000000000
..................................................TTC-GCAAGGCTGCG----------------GAGGATTGAGGCA............................................................................................................................27200.05101000000000
................................................................G----------------GAGGATTGAGGCATCGGTCGAGT..................................................................................................................24200.05101000000000
......................................................................................TTGAGGCATCGGTCGAGTAGCCGTC---------C.................................................................................................26200.05101000000000

Generated: 05/15/2015 at 02:55 PM