ID:

dpe_226

 Coordinate:

scaffold_430:1221-1307 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.5 -10.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy10-I_Dpse-intLTRGypsy-
mature
  1. scaffold_1:5709703-5709725 -
  2. scaffold_0:9674755-9674777 -
  3. scaffold_9:2890978-2891000 +
  4. scaffold_26:765710-765732 +
  5. scaffold_30:784186-784208 -
  6. dpe_225  scaffold_10940:281-303 +
  7. dpe_226  scaffold_430:1285-1307 -
  8. scaffold_186:25841-25863 -
  9. scaffold_325:4024-4046 +
  10. scaffold_325:17611-17633 -
  11. dpe_1288  scaffold_2650:1498-1520 -
star
  1. dpe_225  scaffold_10940:312-339 +
  2. dpe_226  scaffold_430:1249-1276 -

Sense Strand Reads

CGATAGTTTTACACGGCTGAGTTCCGCTTAGCTCTCGTTTGCGATATCTTTTACGAAGTTTTGGTCCACTGGGTATCTACATACATATGTATGCATGCAAGTTAACGTACCCAATTCCATTGAGCTCTTATACGAGTTGTAAACAATCTTTGGTTTTCCAAAACGAAAACAATTTCAATCTTGGGCC
***********************************..........................(((.....(((((((...(((((....))))).............)))))))...))).....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
..................................................TTACGAAGTTTTGGTCCACTGGG.................................................................................................................. 23 0 11 9.09 100 96 1 3 0
..................................................TTACGAAGTTTTGGTCCACTGG................................................................................................................... 22 0 18 6.72 121 112 4 2 3
..................................................TTACGAAGTTTTGGTCCACTGGGTA................................................................................................................ 25 0 5 6.20 31 28 0 3 0
..................................................TTACGAAGTTTTGGTCCACTGGGT................................................................................................................. 24 0 7 2.14 15 8 5 1 1
.........TACACGGCTGAGTTCCGCTTAGCTC......................................................................................................................................................... 25 0 7 2.00 14 14 0 0 0
..................................................TTACGAAGTTTTGGTCCACTG.................................................................................................................... 21 0 18 1.94 35 31 1 2 1
...TAGTTTTACACGGCTGAGTTCCGCT............................................................................................................................................................... 25 0 7 1.57 11 10 1 0 0
.........TACACGGCTGAGTTCCGCTTAGCT.......................................................................................................................................................... 24 0 7 1.29 9 6 0 0 3
..................................................TTACGAAGTTTTGGTCCACTGGGTAT............................................................................................................... 26 0 4 1.25 5 5 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGTATC.............................................................................................................. 27 0 4 1.25 5 2 3 0 0
.........TACACGGCTGAGTTCCGCTTAGC........................................................................................................................................................... 23 0 7 1.14 8 8 0 0 0
...................................................TACGAAGTTTTGGTCCACTGG................................................................................................................... 21 0 18 0.67 12 12 0 0 0
...TAGTTTTACACGGCTGAGTTCC.................................................................................................................................................................. 22 0 7 0.57 4 4 0 0 0
.................................................................................TACATATGTATGCATGCAAGTTAACGTA.............................................................................. 28 0 2 0.50 1 1 0 0 0
.....................TTCCGCTTAGCTCTCGTTTGC................................................................................................................................................. 21 0 7 0.43 3 1 1 0 1
......................TCCGCTTAGCTCTCGTTTGCGATATCTTT........................................................................................................................................ 29 0 7 0.43 3 3 0 0 0
........TTACACGGCTGAGTTCCGCTTAGC........................................................................................................................................................... 24 0 7 0.43 3 3 0 0 0
...................................................TACGAAGTTTTGGTCCACTGGGTA................................................................................................................ 24 0 5 0.40 2 2 0 0 0
..................................................TTACGAAGATTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.36 4 4 0 0 0
...................................................TACGAAGTTTTGGTCCACTGGG.................................................................................................................. 22 0 11 0.36 4 4 0 0 0
.........TACACGGCTGAGTTCCGCTTAGCTCTCG...................................................................................................................................................... 28 0 6 0.33 2 2 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGTAA............................................................................................................... 26 1 6 0.33 2 2 0 0 0
..................................................TTACGAAGTTTTGGTCCACT..................................................................................................................... 20 0 18 0.28 5 3 2 0 0
............................................................................CTACATACATATGTATGCATGCAGG...................................................................................... 25 1 4 0.25 1 1 0 0 0
...................................................TACGAAGTTTTGGTCCACTGGGTATA.............................................................................................................. 26 1 4 0.25 1 1 0 0 0
................................................TTTTACGAAGTTTTGGTCCACTGGG.................................................................................................................. 25 0 10 0.20 2 2 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGCAT............................................................................................................... 26 1 5 0.20 1 1 0 0 0
....................................................ACGAAGTTTTGGTCCACTGGGTA................................................................................................................ 23 0 5 0.20 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTGGGTA................................................................................................................ 25 1 5 0.20 1 1 0 0 0
..................................................TTACGAAGATTTGGTCCACTGGGTA................................................................................................................ 25 1 5 0.20 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGTGTA................................................................................................................ 25 1 6 0.17 1 0 0 1 0
..................................................TTACGAAGGTTTGGTCCACTGG................................................................................................................... 22 1 18 0.17 3 3 0 0 0
.........TACACGGCCGAGTTCCGCTTAGCTC......................................................................................................................................................... 25 1 7 0.14 1 1 0 0 0
....AGTTTTACACGGCTGAGTTCCGC................................................................................................................................................................ 23 0 7 0.14 1 1 0 0 0
..........ACACGGCTGAGTTCCGCTTAGCT.......................................................................................................................................................... 23 0 7 0.14 1 1 0 0 0
.......................CCGCTTAGCTCTCGTTTGCGA............................................................................................................................................... 21 0 7 0.14 1 1 0 0 0
......................TCCGCTTAGCTCTCGTTTGCGATATCT.......................................................................................................................................... 27 0 7 0.14 1 1 0 0 0
....AGTTTTACACGGCTGAGTTCCGCT............................................................................................................................................................... 24 0 7 0.14 1 1 0 0 0
.........TACACGGCAGAGTTCCGCTTAGCTC......................................................................................................................................................... 25 1 7 0.14 1 1 0 0 0
...TAGTTTTACACGGCTGAGTTCCGCTT.............................................................................................................................................................. 26 0 7 0.14 1 1 0 0 0
........TTACACGGCTGAGTTCCGCTTAGCT.......................................................................................................................................................... 25 0 7 0.14 1 1 0 0 0
.......TTTACACGGCTGAGTTCCGCTTAGC........................................................................................................................................................... 25 0 7 0.14 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTGGGT................................................................................................................. 24 1 7 0.14 1 1 0 0 0
...TAGTTTTACACGGCTGAGTTCCG................................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0
...TAGTTTTACACGGCTGAGTTCCGC................................................................................................................................................................ 24 0 7 0.14 1 1 0 0 0
.................TGAGTTCCGCTTAGCTCTCGTT.................................................................................................................................................... 22 0 7 0.14 1 1 0 0 0
.......................CCGCTTAGCTCTCGTTTGCGATATCTT......................................................................................................................................... 27 0 7 0.14 1 1 0 0 0
.........TACACGGCTGAGTTCCGCTTAGCTCT........................................................................................................................................................ 26 0 7 0.14 1 1 0 0 0
................CTGAGTTCCGCTTAGCTCTCG...................................................................................................................................................... 21 0 7 0.14 1 1 0 0 0
........TTACACGGCTGAGTTCCGCTTAGCTC......................................................................................................................................................... 26 0 7 0.14 1 1 0 0 0
..................AAGTTCCGCTTAGCTCTCGTT.................................................................................................................................................... 21 1 7 0.14 1 1 0 0 0
.................TGAGTTCCGCTTAGCTCTCGTTTGCGA............................................................................................................................................... 27 0 7 0.14 1 1 0 0 0
......................TCCGCTTAGCTCTCGTTTGA................................................................................................................................................. 20 1 7 0.14 1 1 0 0 0
....................GTTCCGCTTAGCTCTCGTT.................................................................................................................................................... 19 0 7 0.14 1 1 0 0 0
......................TCCGCTTAGCTCTCGTTTG.................................................................................................................................................. 19 0 7 0.14 1 1 0 0 0
........TTACACGGCTGAGTTCCGCTTAG............................................................................................................................................................ 23 0 7 0.14 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGCTT............................................................................................................... 26 2 8 0.13 1 0 1 0 0
..............GGCTGAGTTCCGCTTAGCTC......................................................................................................................................................... 20 0 8 0.13 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGA................................................................................................................... 22 1 18 0.11 2 2 0 0 0
.......................................TGCGATATCTTTTACGAAGTTTTGG........................................................................................................................... 25 0 19 0.11 2 2 0 0 0
......................................................................................................................................................TGTTTTTCCAAAACGGAAA.................. 19 2 20 0.10 2 0 2 0 0
..................................................GTACGAAGTTTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.09 1 1 0 0 0
..................................................TTACTAAGTTTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.09 1 1 0 0 0
..................................................TTACGAAGCTTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.09 1 1 0 0 0
...................................................TACGAAGTGTTGGTCCACTGGG.................................................................................................................. 22 1 11 0.09 1 1 0 0 0
..................................................TTACGAAGTTTTGATCCACTGGG.................................................................................................................. 23 1 12 0.08 1 1 0 0 0
CGATAGTTTTACACGGCTGAGTT.................................................................................................................................................................... 23 0 16 0.06 1 1 0 0 0
...............................................CTTTTACGCAGTTTTGGTCCACTGG................................................................................................................... 25 1 17 0.06 1 1 0 0 0
...............................................CTTTTACGAAGTTTTGGTCCAC...................................................................................................................... 22 0 17 0.06 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCATT..................................................................................................................... 20 1 18 0.06 1 1 0 0 0
...................................................TACGAAGTTTTGGTCCACTG.................................................................................................................... 20 0 18 0.06 1 1 0 0 0
..................................................TTACGAAGCTTTGGTCCACTGG................................................................................................................... 22 1 18 0.06 1 1 0 0 0
...........................TTAGCTCTCGTTTGCGATAA............................................................................................................................................ 20 1 18 0.06 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGCA.................................................................................................................. 23 2 18 0.06 1 1 0 0 0
..................................................TTACGAAGATTTGGTCCACTG.................................................................................................................... 21 1 18 0.06 1 1 0 0 0
..................................TCGTTTGCGATATCTTTTACGAAGTTT.............................................................................................................................. 27 0 18 0.06 1 1 0 0 0
....................................................ACGAAGTTTTGGTCCACTGG................................................................................................................... 20 0 18 0.06 1 1 0 0 0
...............................CTCTCGTTTGCGATATCTT......................................................................................................................................... 19 0 18 0.06 1 1 0 0 0
..................................................TTACGAAGATTTGGTCCACTGG................................................................................................................... 22 1 18 0.06 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTG.................................................................................................................... 21 1 18 0.06 1 1 0 0 0
..ATAGTTTTACACGGCTGAG...................................................................................................................................................................... 19 0 18 0.06 1 1 0 0 0
..................................................CTACGAAGTTTTGGTCCACTGG................................................................................................................... 22 1 18 0.06 1 1 0 0 0
............................TAGCTCTCGTTTGCGATATCTTT........................................................................................................................................ 23 0 18 0.06 1 1 0 0 0
.............................AGCTCTCGTTTGCGATATCTTTTAC..................................................................................................................................... 25 0 18 0.06 1 1 0 0 0
............................TAGCTCTCGTTTGCGATATC........................................................................................................................................... 20 0 18 0.06 1 1 0 0 0
..ATAGTTTTACACGGCTGAGT..................................................................................................................................................................... 20 0 18 0.06 1 1 0 0 0
.....................................TTTGCGATATCTTTTACGAAGTTT.............................................................................................................................. 24 0 19 0.05 1 1 0 0 0
......................................TTGCGATATCTTTTACGAAGT................................................................................................................................ 21 0 19 0.05 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACC..................................................................................................................... 20 1 19 0.05 1 0 1 0 0
.....................................TTTGCGATATCTTTTACGAAGTTTTG............................................................................................................................ 26 0 19 0.05 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCAC...................................................................................................................... 19 0 19 0.05 1 1 0 0 0
.............................................................................................................................................AACAATCTCTGGTTTTCCAAAACGA..................... 25 1 20 0.05 1 1 0 0 0
.................................................................................................................................................................TACGAAAACAATTTCAATCTTGGGAC 26 2 20 0.05 1 0 1 0 0
.............................................................................................................................................AACAATCTTTGGTTTTCCAAAAC....................... 23 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GCTATCAAAATGTGCCGACTCAAGGCGAATCGAGAGCAAACGCTATAGAAAATGCTTCAAAACCAGGTGACCCATAGATGTATGTATACATACGTACGTTCAATTGCATGGGTTAAGGTAACTCGAGAATATGCTCAACATTTGTTAGAAACCAAAAGGTTTTGCTTTTGTTAAAGTTAGAACCCGG
***************************************************************..........................(((.....(((((((...(((((....))))).............)))))))...))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
 V057
head
...................................GCAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 25 0 19 1.37 26 26 0 0 0 0
.................................................................GGTGACCCATAGATGTATGTATACAT................................................................................................ 26 0 4 1.00 4 4 0 0 0 0
..................................................................................................TTCAATTGCATGGGTTAAGGTAACT................................................................ 25 0 20 0.95 19 18 1 0 0 0
..................................................................................................................................ATGCTCAACATTTGTTAGAAA.................................... 21 0 20 0.70 14 14 0 0 0 0
........................................................TCAAAACCAGGTGACCCATAGAT............................................................................................................ 23 0 4 0.50 2 2 0 0 0 0
.................................................................GGTGACCCATAGATGTATGTATACATA............................................................................................... 27 0 4 0.50 2 2 0 0 0 0
..............................................................CCAGGTGACCCATAGATGTATGTATACAT................................................................................................ 29 0 4 0.50 2 0 2 0 0 0
.....................................................................................ATACATACGTACGTTCAATTGCATGGGT.......................................................................... 28 0 2 0.50 1 1 0 0 0 0
.............................................................ACCAGGTGACCCATAGATGTATGTAT.................................................................................................... 26 0 4 0.50 2 1 1 0 0 0
.................................................................GGTGACCCATAGATGTATGT...................................................................................................... 20 0 4 0.50 2 2 0 0 0 0
...............................................................................................................................AATATGCTCAACATTGGTTAGAAA.................................... 24 1 20 0.45 9 9 0 0 0 0
.....................................................................................................................GTAACTCGAGAATATGCTCAACATTTGT.......................................... 28 0 20 0.35 7 7 0 0 0 0
.............................................................................................................GGGTTAAGGTAACTCGAGAAT......................................................... 21 0 20 0.30 6 0 0 6 0 0
...........GTGCCGACTCAAGGCGAATCGAGAGC...................................................................................................................................................... 26 0 7 0.29 2 0 2 0 0 0
...................................................................TGACCCATAGATGTATGTATACATA............................................................................................... 25 0 4 0.25 1 1 0 0 0 0
...........................................................................................ACGTACGTTCAATTGCATGGGTTAAGGT.................................................................... 28 0 4 0.25 1 1 0 0 0 0
.....................................................................ACCCATAGATGTATGTATACAT................................................................................................ 22 0 4 0.25 1 1 0 0 0 0
..............................................................CCAGGTGACCCATAGATGTATGTAT.................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
..............................................................TCAGGTGACCCATAGATGTATGTATACAT................................................................................................ 29 1 4 0.25 1 0 1 0 0 0
...............................................................CAGGTGACCCATAGATGT.......................................................................................................... 18 0 4 0.25 1 0 0 0 1 0
....................................................................GACCCATAGATGTATGTAT.................................................................................................... 19 0 4 0.25 1 1 0 0 0 0
..............................................................CCAGGTGACCCATAGATGTA......................................................................................................... 20 0 4 0.25 1 0 1 0 0 0
...............................................................AAGGTGACCCATAGATGTATGTATACAT................................................................................................ 28 1 4 0.25 1 1 0 0 0 0
.......AGATGTGCAGACTCAAGGG................................................................................................................................................................. 19 3 14 0.21 3 0 0 3 0 0
.....................................................................................................................................CTCAACATTTGTTAGAAACCAA................................ 22 0 20 0.20 4 0 4 0 0 0
........................................................................................................TGCATGGGTTAAGGTAACTCGAGAAT......................................................... 26 0 20 0.20 4 4 0 0 0 0
...........................................................................................................ATGGGTTAAGGTAACTCGAGAA.......................................................... 22 0 20 0.20 4 4 0 0 0 0
..................................................................................................TTCAATTGCATGGGTTAAGGTAAC................................................................. 24 0 20 0.20 4 4 0 0 0 0
.................................................................................................................................................................TTGCTTTTGTTAAAGTTAGAACC... 23 0 20 0.20 4 4 0 0 0 0
..................................................................................................................................................................TGCTTTTGTTAAAGTTAGAAC.... 21 0 20 0.20 4 0 0 4 0 0
.........................................................................................................................................................AAAAGGTTTTGCTTTTGTTAAAGT.......... 24 0 20 0.15 3 0 0 3 0 0
.............................................................................................................GGGTTAAGGTAACTCGAGAATATGCT.................................................... 26 0 20 0.15 3 3 0 0 0 0
.............................................................................................................................TGAATATGCTCAACATTTGTTAGAAA.................................... 26 1 20 0.15 3 0 3 0 0 0
.......................................................................................................................AACTCGAGAATATGCTCAACATTTGTT......................................... 27 0 20 0.15 3 3 0 0 0 0
..............................................................................................................................GAATATGCTCAACATTAGTTAGAAA.................................... 25 1 20 0.15 3 3 0 0 0 0
.....................................................................................................................GTAACTCGAGAATATGCTCAACATTT............................................ 26 0 20 0.15 3 3 0 0 0 0
......................................................................................................................TAACTCGAGAATATGCTCAACATTTGT.......................................... 27 0 20 0.15 3 3 0 0 0 0
................................................................................................CGTTCAATTGCATGGGTTAAGGTAACT................................................................ 27 0 20 0.15 3 3 0 0 0 0
........AATGTGCCGACTCAAGGCGAATCGAGA........................................................................................................................................................ 27 0 7 0.14 1 0 0 1 0 0
....................CAAGGCGAATCGAGAGCAAACGCTAT............................................................................................................................................. 26 0 7 0.14 1 1 0 0 0 0
..................TTCAAGGCGAATCGAGAGCAAA................................................................................................................................................... 22 1 7 0.14 1 1 0 0 0 0
.......AAATGTGCCGACTCAAGGCGAAT............................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0 0
..........TGTGCCGACTCAAGGGGAATCGAG......................................................................................................................................................... 24 1 7 0.14 1 1 0 0 0 0
......................AGGCGAATCGAGAGCAAACGCTAT............................................................................................................................................. 24 0 7 0.14 1 1 0 0 0 0
............................................................................................CGTACGTTCAATTGCATGGGTTAAGGT.................................................................... 27 0 7 0.14 1 1 0 0 0 0
...ATCAAAATGTGCCGACTCAAGGCGAAT............................................................................................................................................................. 27 0 7 0.14 1 1 0 0 0 0
.....CAAAATGTGCCGACTCAAGGCGAAT............................................................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0
..................CTCAAGGCGAATCGAGAGC...................................................................................................................................................... 19 0 7 0.14 1 0 1 0 0 0
....................CAAGGCGAATCGAGAGCAAACGCT............................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
...........GTGCCGACTCAAGGCGAATC............................................................................................................................................................ 20 0 8 0.13 1 0 0 0 1 0
...........GTGCCGACTCAAGGCGAATCGAGA........................................................................................................................................................ 24 0 8 0.13 1 1 0 0 0 0
...........GTGCCGACTCAAGGCGAATCG........................................................................................................................................................... 21 0 8 0.13 1 1 0 0 0 0
...........GTGCCGACTCAAGGCGAATCGAG......................................................................................................................................................... 23 0 8 0.13 1 1 0 0 0 0
..............................................AGAAAATGCTTCAAAACCAGGTGACC................................................................................................................... 26 0 17 0.12 2 0 1 0 1 0
........................................CGCTATAGAAAATGCTTCAAAACCAGGT....................................................................................................................... 28 0 17 0.12 2 2 0 0 0 0
..............................CGAGAGCAAACGCTATAGAAAATGC.................................................................................................................................... 25 0 18 0.11 2 2 0 0 0 0
..............................CGAGAGCAAACGCTATAGAAAATGCT................................................................................................................................... 26 0 18 0.11 2 1 0 0 1 0
................................AGAGCAAACGCTATAGAAAATGCTT.................................................................................................................................. 25 0 18 0.11 2 2 0 0 0 0
....................................CAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 24 0 19 0.11 2 2 0 0 0 0
.....................................AAACGCTATAGAAAATGCTTCAA............................................................................................................................... 23 0 19 0.11 2 2 0 0 0 0
..............................................................................................TACGTTCAATTGCATGGGTTAAG...................................................................... 23 0 20 0.10 2 2 0 0 0 0
..............................................................................................................GGTTAAGGTAACTCGAGAA.......................................................... 19 0 20 0.10 2 2 0 0 0 0
...............................................................................................ACGTTCAATTGCATGGGTTAAGGTAAC................................................................. 27 0 20 0.10 2 2 0 0 0 0
.............................................................................................................GGGTTAAGGTAACTCGAGAATAT....................................................... 23 0 20 0.10 2 1 0 0 1 0
...............................................................................................ACGTTCAATTGCATGGGTTAAGGTA................................................................... 25 0 20 0.10 2 2 0 0 0 0
..................................................................................................TTCAATTGCATGGGTTAAGGTAACTCG.............................................................. 27 0 20 0.10 2 2 0 0 0 0
...................................................................................................TCAATTGCATGGGTTAAGGTAACTCG.............................................................. 26 0 20 0.10 2 2 0 0 0 0
....................................................................................................CAATTGCATGGGTTAAGGTAACT................................................................ 23 0 20 0.10 2 0 0 2 0 0
..............................................................................................................................GACTATGCTCAACATTTGTTAGAAA.................................... 25 1 20 0.10 2 0 1 0 1 0
.................................................................................................GTTCAATTGCATGGGTTAAGGTAAC................................................................. 25 0 20 0.10 2 2 0 0 0 0
........................................................................................................TGCATGGGTTAAGGTAACTCGAGA........................................................... 24 0 20 0.10 2 2 0 0 0 0
...................................................................................................TCAATTGCATGGGTTAAGGTAAC................................................................. 23 0 20 0.10 2 0 2 0 0 0
..............................................GGAAAATGCTTCAAAACCAGGTGACC................................................................................................................... 26 1 17 0.06 1 0 1 0 0 0
.................................GAGCAAACGCTATAGAAAGTGCTTCAA............................................................................................................................... 27 1 18 0.06 1 1 0 0 0 0
..............................CGAGAGCAAACGCTATAGAAAATG..................................................................................................................................... 24 0 18 0.06 1 0 1 0 0 0
...................................GCAAACGCTATAGAAAGTGCTTCAA............................................................................................................................... 25 1 19 0.05 1 1 0 0 0 0
....................................CAAACGCTATAGAAAATGCTTCAAA.............................................................................................................................. 25 0 19 0.05 1 1 0 0 0 0
....................................CAAACGCTATAGAAAGTGCTTCAA............................................................................................................................... 24 1 19 0.05 1 1 0 0 0 0
..............................................................................................TACGTTCAATTGCATGGGTTAAGGTAACT................................................................ 29 0 19 0.05 1 0 1 0 0 0
...................................GGAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 25 1 19 0.05 1 1 0 0 0 0
...................................GCAAACGCTATAGAAAATGCTTCAAAAC............................................................................................................................ 28 0 19 0.05 1 1 0 0 0 0
.....................................AAACGCTATAGAAAATGCTT.................................................................................................................................. 20 0 19 0.05 1 1 0 0 0 0
.................................AAGCAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 27 1 19 0.05 1 1 0 0 0 0
.......................................................................................................................AACTCGAGAATATGCTCAACATTT............................................ 24 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................GAATATGCTCAACATTTGTTAGAAA.................................... 25 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................CGAGAATATGCTCAACATTTGTTAGAA..................................... 27 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................GCTCAACATTTGTTAGAAAC................................... 20 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................GAATATGCTCAACATATGTTAGAA..................................... 24 1 20 0.05 1 1 0 0 0 0
......................................................................................................ATTGCATGGGTTAAGGTAACT................................................................ 21 0 20 0.05 1 1 0 0 0 0
.............................................................................................................GGGTTAAGGTAACTCGAGA........................................................... 19 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................ATGCTCAACATTTGTTAGAAACCAA................................ 25 0 20 0.05 1 1 0 0 0 0
.......................................................................................................TTGCATGGGTTAAGGTAACTCGAGAA.......................................................... 26 0 20 0.05 1 1 0 0 0 0
......................................................................................................ATTGCATGGGTTAAGGTAAC................................................................. 20 0 20 0.05 1 1 0 0 0 0
...........................................................................................................ATGGGTTAAGGTAACTCGAGAATA........................................................ 24 0 20 0.05 1 0 0 0 1 0
............................................................................................................TGGGTTAAGGTAACTCGAGAA.......................................................... 21 0 20 0.05 1 0 0 0 0 1
....................................................................................................AAATTGCATGGGTTAAGGTAACT................................................................ 23 1 20 0.05 1 1 0 0 0 0
....................................................................................................AAATTGCATGGGTTAAGGTAAC................................................................. 22 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................TATGCTCAACATTTGTTAGAAACC.................................. 24 0 20 0.05 1 1 0 0 0 0
............................................................................................................................GAGAATATGCTCAACATTTGTTAGAAAC................................... 28 0 20 0.05 1 0 0 1 0 0
.............................................................................................................................................................GGTTTTGCTTTTGTTAAAGTT......... 21 0 20 0.05 1 1 0 0 0 0
............................................................................................................TGGGTTAAGGTAACTCGAGAAT......................................................... 22 0 20 0.05 1 1 0 0 0 0
...............................................................................................ACGTTCAATTGCATGGGTTAAGGTAACT................................................................ 28 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................CAACATTTGTTAGAAACCAAAAGGTTT......................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................CTCAACATTTGTTAGAAACCAAAAGGT........................... 27 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................AGAATATGCTCAACATTTGTTAGAAA.................................... 26 0 20 0.05 1 0 0 0 1 0
............................................................................................................................................................AGGTTTTGCTTTTGTTAAAGT.......... 21 0 20 0.05 1 1 0 0 0 0
...............................................................................................ACGTTCAATTGCATGGGTTAAGGTG................................................................... 25 1 20 0.05 1 1 0 0 0 0
..........................................................................................................CATGGGTTAAGGTAACTCGAGAA.......................................................... 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................TTCAATTGCATGGGTTAAGGTAACG................................................................ 25 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................ACATTTGTTAGAAACCAAAAGGT........................... 23 0 20 0.05 1 1 0 0 0 0
...................................GCATACGCTATAGAAAATGCTTCAA............................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
................................................................................................CGTTCAATTGCATGGGTTAAG...................................................................... 21 0 20 0.05 1 1 0 0 0 0
.................................................................................................................TAAGGTAACTCGAGAATATGCT.................................................... 22 0 20 0.05 1 1 0 0 0 0
............................................................................................................................GAGAATATGCTCAACATTAGTTAGAAA.................................... 27 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................GGTTTTGCTTTTGTTGAAGTTAGA...... 24 1 20 0.05 1 1 0 0 0 0
..............................................................................................TACGTTCAATTGCATGGGTTAAGGT.................................................................... 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................GCTTTTGTTAAAGTTAGAACC... 21 0 20 0.05 1 1 0 0 0 0
........................................CGCTATAGAAAATGCTTCAA............................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..................................................................................................................AAGGTAACTCGAGAATATGCTCAACATT............................................. 28 0 20 0.05 1 1 0 0 0 0
.......................................ACGCTATAGAAAATGCTTCA................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................TTTTGTTAAAGTTAGAACC... 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................AATATGCTCAACTTTTGTTAGAAAC................................... 25 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................CTCAACATTTGTTAGAAAC................................... 19 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................AAAGGTTTTGCTTTTGTTAAAGTTAG....... 26 0 20 0.05 1 0 1 0 0 0
..........................................................................................................AATGGGTTAAGGTAACTCGAGA........................................................... 22 1 20 0.05 1 1 0 0 0 0
...................................GCAAACGCTATAGAAATTGCTTCAA............................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
...................................................................................................TCAATTGCATGGGTTAAGGTAACT................................................................ 24 0 20 0.05 1 0 0 0 1 0
..................................................................................................TTCAATTGCATGGGTTTAGGTAACT................................................................ 25 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_430:1171-1357 - dpe_226 CGATAGTT---------TTACACGGCTGAGTT--CCGCTTAGCTCTCGTTTGCGATATCTTTTACGAAGTTTTGGTCCAC--------TGGGTATCTACATACATATG------TATGCATGCAAGTTAACGTACCCAATTCCATTGAGCTCTTATACGAGTTGTAAACAA-TCTT-TGGTTTTCCAAAACGAA-----AACAATTTCAATCTTGGGCC
dp5 Unknown_group_819:1767-1879 + GTATATA-------------------------------------------------------------------------------------------CAT--ATATA------TATATATGTAAGTTAACGTACCCAATTCTATTGAGCTCTTATACGAGTTGTAAACAA-TCTT-TGGCTTTCCAAAACGAA-----AACAATTTCAATCTTGGGCC
droWil2 scf2_1100000004512:89765-89852 - CACGCAAAATAGCCTTAT-----CCC--CGATTCACACTGAG--------------------------------------CTCTA----------------------------------------------------------------------TC--------CACCATATCTT-TGGGATTGCCGAGTGAA-----AACGATTTCAATCCCAGG--
droVir3 scaffold_12970:5677024-5677094 + TTTTGTT--------TG-----------CGAT--TCGCAGAG--------------------------------------TTTTG-----CACAGCCACATACATATG------TACATATGCAATGCAGTGTATTCAAT-----------------------------------------------------------------------T-------
droMoj3 scaffold_6473:1193909-1194008 + ATATAC-------------------------------------------------------------------------------------------------ATATG------TATGTGTGCATGTAGGCGTTCTTAAGCGTGTTTAATTACTATATG-TTCGTAGTGGG-TGCG-TCATTTTGAGAAGCAAT-----AGCAACATCAAT--------
droGri2 scaffold_15110:17411092-17411176 + AAGTTAATTC-------TTAATTGCTTAAAGT----------------------------------------------------------------------------------------------------------------------TATGGCTCAAGTATTAGCCAA-GATTTCGCTTTTTCAAAACGAA-----ATCGTTTTCTATTTTGG---
droAna3 scaffold_13417:2641115-2641201 - TTATGGTTTTTAAATCGTTCCAGGTTTAAGTT--TTGCCCAACTCTCGTTTTCGTTATCTTCTTCGAATTTCTGGCCCAT--------TGGGGACCT--------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395390:9067-9147 + TACATAC------------------------------------------------------------------------------------------------ATATG------TATATATAATAATTAATCCATGCATTTCTATTTTTCTATTTCTTGTATTGAAA---------------------AGCAACACAAAAACA--------A-------
droKik1 scf7180000301975:13840-13958 + CGGACGTT---------TTGTCCGCCTGCGGT--CCGCAAAACTTCAGTTTTTAATATTTTTTACGGAGTTTTTGTCTGC--------TGGGTAGCA-TTTATTTACTTTTACATACATAGTCAAT-----ACAGTCCACTCC--------------------------------------------------------------------A-------
droFic1 scf7180000453143:13117-13156 + TTTTGGTGC---------------------------------------------------------------------TC--------GACATATGTACATACATATG------TGTGCATAC------------------------------------------------------------------------------------------------
droEle1 scf7180000489779:16364-16440 - CAACACT--------TGTTACACGTTTACCTC--TCTCTTAACTATCGTTTACGATATCGTTAACGAAGTTTTGGTCCAC--------TGGGAAT----------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000762481:11608-11705 - CGATAGT--------CGTTTTACGTTTAAGTT--TCGCGTAACTATTGTTTGCGATATCGCTAACCAACATTTGGTCAAC--------TGGGCAGTA-TGTATGTGTG------AGCGTATGT------------------------------------------------------------------------------------------------
droBia1 scf7180000301319:11699-11771 + TATATAT------------------------------------------------------------------------------------------------GTAAA------TATACGTGCAAGTTATATGACACATTATTTAGGGGCTCTTACCCAATTTATAAACAA-CTTT-------------------------------------------
droTak1 scf7180000411357:39698-39801 + CGATAGC--------CGTTTTCCGTTTAAGTT--TCGCGTAACTATCGTTTGCGATATCGCTAACGAACACTTGGTCCAC--------TGGGATATTACATCCATATA-T----TACACACATATT-------------------------------------------------------------------------------------A-------
droEug1 scf7180000409759:155530-155615 - TGATTTT--------TGTTTTGCCCTTTTCTT--TTGCAAAG--------------------------------------ATTTATAT-ATGTATGTACATACATATG------TATGTATGCATACATATGTAAGTACT-----------------------------------------------------------------------C-------
dm3 chrX:19712045-19712083 - GCCCAT----------------------------------------------------------------------------------TATGTATGTACATACATATG------TATGTATGTATGT--------------------------------------------------------------------------------------------
droYak3 v2_chr2L_random_001:158551-158651 + CGGACGTT---------TTGTCCGCCTAAAGT--TCGCAAAACTATCGTTTGTAATGTCATAAACGAAGTTTTTGTCTGC--------TGGGAATTATTGTTTTTACT------CACACAAGCAAG---------------------------------------------------------------------------------------------
droEre2 scaffold_4644:273058-273147 + GATATGC------------------------------------------------------------------------------------------ACATACATATG------TACACATACATATATACATATACAGTTGCAGTTGGCTTTAAACCAAATTGCTA--------------------------CAAATTACA-----CAGTTTTCGG--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
CGATAGTT---------TTACACGGCTGAGTT--CCGCTTAGCTCTCGTTTGCGATATCTTTTACGAAGTTTTGGTCCAC--------TGGGTATCTACATACATATG------TATGCATGCAAGTTAACGTACCCAATTCCATTGAGCTCTTATACGAGTTGTAAACAA-TCTT-TGGTTTTCCAAAACGAA-----AACAATTTCAATCTTGGGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................TTACGAAGTTTTGGTCCAC--------TGGG...............................................................................................................................23119.091001960003
.............................................................TTACGAAGTTTTGGTCCAC--------TGG................................................................................................................................22186.7212141123002
.............................................................TTACGAAGTTTTGGTCCAC--------TGGGTA.............................................................................................................................2556.20310280003
.............................................................TTACGAAGTTTTGGTCCAC--------TGGGT..............................................................................................................................2472.1415581001
..................TACACGGCTGAGTT--CCGCTTAGCTC..............................................................................................................................................................................2572.00140140000
.............................................................TTACGAAGTTTTGGTCCAC--------TG.................................................................................................................................21181.94351311002
...TAGTT---------TTACACGGCTGAGTT--CCGCT....................................................................................................................................................................................2571.57111100000
..................TACACGGCTGAGTT--CCGCTTAGCT...............................................................................................................................................................................2471.299063000
.............................................................TTACGAAGTTTTGGTCCAC--------TGGGTAT............................................................................................................................2641.255050000
.............................................................TTACGAAGTTTTGGTCCAC--------TGGGTATC...........................................................................................................................2741.255320000
..................TACACGGCTGAGTT--CCGCTTAGC................................................................................................................................................................................2371.148080000
..............................................................TACGAAGTTTTGGTCCAC--------TGG................................................................................................................................21180.67120120000
...TAGTT---------TTACACGGCTGAGTT--CC.......................................................................................................................................................................................2270.574040000
....................................................................................................TACATATG------TATGCATGCAAGTTAACGTA.....................................................................................2820.501010000
..............................TT--CCGCTTAGCTCTCGTTTGC......................................................................................................................................................................2170.433111000
...............................T--CCGCTTAGCTCTCGTTTGCGATATCTTT.............................................................................................................................................................2970.433030000
.................TTACACGGCTGAGTT--CCGCTTAGC................................................................................................................................................................................2470.433030000
..............................................................TACGAAGTTTTGGTCCAC--------TGGGTA.............................................................................................................................2450.402020000
..............................................................TACGAAGTTTTGGTCCAC--------TGGG...............................................................................................................................22110.364040000
..................TACACGGCTGAGTT--CCGCTTAGCTCTCG...........................................................................................................................................................................2860.332020000
.............................................................TTACGAAGTTTTGGTCCAC--------TGGGTAA............................................................................................................................2660.332020000
.............................................................TTACGAAGTTTTGGTCCAC--------T..................................................................................................................................20180.285230000
..............................................................TACGAAGTTTTGGTCCAC--------TGGGTATA...........................................................................................................................2640.251010000
...........................................................TTTTACGAAGTTTTGGTCCAC--------TGGG...............................................................................................................................25100.202020000
...............................................................ACGAAGTTTTGGTCCAC--------TGGGTA.............................................................................................................................2350.201010000
....AGTT---------TTACACGGCTGAGTT--CCGC.....................................................................................................................................................................................2370.141010000
...................ACACGGCTGAGTT--CCGCTTAGCT...............................................................................................................................................................................2370.141010000
..................................CCGCTTAGCTCTCGTTTGCGA....................................................................................................................................................................2170.141010000
...............................T--CCGCTTAGCTCTCGTTTGCGATATCT...............................................................................................................................................................2770.141010000
....AGTT---------TTACACGGCTGAGTT--CCGCT....................................................................................................................................................................................2470.141010000
...TAGTT---------TTACACGGCTGAGTT--CCGCTT...................................................................................................................................................................................2670.141010000
.................TTACACGGCTGAGTT--CCGCTTAGCT...............................................................................................................................................................................2570.141010000
.......T---------TTACACGGCTGAGTT--CCGCTTAGC................................................................................................................................................................................2570.141010000
...TAGTT---------TTACACGGCTGAGTT--CCG......................................................................................................................................................................................2370.141010000
...TAGTT---------TTACACGGCTGAGTT--CCGC.....................................................................................................................................................................................2470.141010000
..........................TGAGTT--CCGCTTAGCTCTCGTT.........................................................................................................................................................................2270.141010000
..................................CCGCTTAGCTCTCGTTTGCGATATCTT..............................................................................................................................................................2770.141010000
..................TACACGGCTGAGTT--CCGCTTAGCTCT.............................................................................................................................................................................2670.141010000
.........................CTGAGTT--CCGCTTAGCTCTCG...........................................................................................................................................................................2170.141010000
.................TTACACGGCTGAGTT--CCGCTTAGCTC..............................................................................................................................................................................2670.141010000
..........................TGAGTT--CCGCTTAGCTCTCGTTTGCGA....................................................................................................................................................................2770.141010000
...............................T--CCGCTTAGCTCTCGTTTGA......................................................................................................................................................................2070.141010000
.............................GTT--CCGCTTAGCTCTCGTT.........................................................................................................................................................................1970.141010000
...............................T--CCGCTTAGCTCTCGTTTG.......................................................................................................................................................................1970.141010000
.................TTACACGGCTGAGTT--CCGCTTAG.................................................................................................................................................................................2370.141010000
.......................GGCTGAGTT--CCGCTTAGCTC..............................................................................................................................................................................2080.131010000
.............................................................TTACGAAGTTTTGGTCCAC--------TGA................................................................................................................................22180.112020000
..................................................TGCGATATCTTTTACGAAGTTTTGG................................................................................................................................................25190.112020000
CGATAGTT---------TTACACGGCTGAGTT--.........................................................................................................................................................................................23160.061010000
..........................................................CTTTTACGAAGTTTTGGTCCAC--------...................................................................................................................................22170.061010000
..............................................................TACGAAGTTTTGGTCCAC--------TG.................................................................................................................................20180.061010000
......................................TTAGCTCTCGTTTGCGATAA.................................................................................................................................................................20180.061010000
.............................................................TTACGAAGTTTTGGTCCAC--------TGCA...............................................................................................................................23180.061010000
.............................................TCGTTTGCGATATCTTTTACGAAGTTT...................................................................................................................................................27180.061010000
...............................................................ACGAAGTTTTGGTCCAC--------TGG................................................................................................................................20180.061010000
..........................................CTCTCGTTTGCGATATCTT..............................................................................................................................................................19180.061010000
..ATAGTT---------TTACACGGCTGAG.............................................................................................................................................................................................19180.061010000
.......................................TAGCTCTCGTTTGCGATATCTTT.............................................................................................................................................................23180.061010000
........................................AGCTCTCGTTTGCGATATCTTTTAC..........................................................................................................................................................25180.061010000
.......................................TAGCTCTCGTTTGCGATATC................................................................................................................................................................20180.061010000
..ATAGTT---------TTACACGGCTGAGT............................................................................................................................................................................................20180.061010000
................................................TTTGCGATATCTTTTACGAAGTTT...................................................................................................................................................24190.051010000
.................................................TTGCGATATCTTTTACGAAGT.....................................................................................................................................................21190.051010000
.............................................................TTACGAAGTTTTGGTCCAC--------C..................................................................................................................................20190.051100000
................................................TTTGCGATATCTTTTACGAAGTTTTG.................................................................................................................................................26190.051010000
.............................................................TTACGAAGTTTTGGTCCAC--------...................................................................................................................................19190.051010000
......................................................................................................................................................................AACAA-TCTT-TGGTTTTCCAAAAC............................23200.051010000
dp5
GTATATA-------------------------------------------------------------------------------------------CAT--ATATA------TATATATGTAAGTTAACGTACCCAATTCTATTGAGCTCTTATACGAGTTGTAAACAA-TCTT-TGGCTTTCCAAAACGAA-----AACAATTTCAATCTTGGGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCC.................................23154.807206570000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCA................................24153.805705610000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGC......................................22162.504003420000220
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCT.....................................23162.063302910000300
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCAAA..............................26151.071601330000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTC..................................22151.001501140000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCTT....................................24160.941501210000200
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCAA...............................25150.931401400000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTT...................................21160.811301210000000
...............................................................................................................................TAACGTACCCAATTCTATTGAGCTC...................................................................25100.7070510001000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCAAAAC............................28150.5380620000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCAAAA.............................27150.4770700000000
..............................................................................................................................................................GAGTTGTAAACAA-TCTT-TGGC......................................21160.4470700000000
...............................................................................................................................TAACGTACCCAATTCTATTGAGCTCA..................................................................26110.3640300000100
..................................................................................................................................................................TGTAAACAA-TCTT-TGGCTTTCCA................................23150.3350500000000
......................................................................................................................................CCCAATTCTATTGAGCTCTTA................................................................2160.3320000000020
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCTTT...................................25160.3150200000300
...............................................................................................................................TAACGTACCCAATTCTATTGAGCTCT..................................................................26100.3030200000100
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCTTTCC.................................27150.2740400000000
..................................................................................................................................................................TGTAAACAA-TCTT-TGGCTTTCCAA...............................24150.2740400000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGG.......................................21160.2540300100000
...............................................................................................................................TAACGTACCCAATTCTATTGAGCT....................................................................24120.2530300000000
................................................................................................................................AACGTACCCAATTCTATTGAGCT....................................................................23120.2530300000000
............................................................................................................................AGTTAACGTACCCAATTCTATTGAGC.....................................................................26120.2530200100000
...............................................................................................................................TAACGTACCCAATTCTATTGAGC.....................................................................23120.2530300000000
............................................................................................................................AGTTAACGTACCCAATTCTATTG........................................................................23140.2130300000000
............................................................................................................................AGTTAACGTACCCAATTCTATTGAGCTC...................................................................28100.2020110000000
..................................................................................................................................................................TGTAAACAA-TCTT-TGGCTTTCC.................................22150.2030300000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCTA....................................24160.1930300000000
..............................................................................................................................................................GAGTTGTAAACAA-TCTT-TGG.......................................20160.1930300000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCC.....................................23160.1930030000000
......................................................................................................................................CCCAATTCTATTGAGCTCTTATA..............................................................2360.1710000000100
............................................................................................................................AGTTAACGTACCCAATTCTATTGAGCT....................................................................27120.1720000000200
..............................................................................................................................................TATTGAGCTCTTATACGAG..........................................................1960.1710100000000
..............................................................................................................................................TATTGAGCTCTTATACGAGTT........................................................2160.1710000000100
...............................................................................................................................TAACGTACCCAATTCTATTGAGCTCTTAT...............................................................2960.1710100000000
...............................................................................................................................TAACGTACCCAATTCTATTGAGCTCTT.................................................................2760.1710100000000
......................................................................................................................................CCCAATTCTATTGAGCTCTTATAC.............................................................2460.1710100000000
......................................................................................................................................CCCAATTCTATTGAGCTCTTAT...............................................................2260.1710100000000
............................................................................................................................AGTTAACGTACCCAATTCTATTGA.......................................................................24130.1520100000010
............................................................................................................................AGTTAACGTACCCAATTCTATT.........................................................................22140.1420200000000
.............................................................................................................................GTTAACGTACCCAATTCTATTG........................................................................22140.1420200000000
..................................................................................................................................................................TGTAAACAA-TCTT-TGGCTTTC..................................21150.1320200000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCTTTC..................................26150.1320010000100
................................................................................................................................................TTGAGCTCTTATACGAGTTGT......................................................21160.1320000000200
..............................................................................................................................................................GAGTTGTAAACAA-TCTT-TGGCTT....................................23160.1320200000000
................................................................................................................................AACGTACCCAATTCTATTGAGCTC...................................................................24100.1010100000000
...........................................................................................................................AAGTTAACGTACCCAATTC.............................................................................19100.1010100000000
.................................................................................................................................ACGTACCCAATTCTATTGAGCTCA..................................................................24110.0910100000000
................................................................................................................................AACGTACCCAATTCTATTGAGCTCA..................................................................25110.0910100000000
.................................................................................................................................ACGTACCCAATTCTATTGAGCT....................................................................22120.0810100000000
................................................................................................................................AACGTACCCAATTCTATTGAGC.....................................................................22120.0810100000000
...................................................................................................................................................................GTAAACAA-TCTT-TGGCTTTC..................................20150.0710100000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCAAAACG...........................29150.0710100000000
................................................................................................................................................................GTTGTAAACAA-TCTT-TGGCTTTCCAA...............................26150.0710100000000
............................................................................................................................................................ACGAGTTGTAAACAA-TCTT-TGGCTTTCC.................................28150.0710100000000
..................................................................................................................................................................TGTAAACAA-TCTT-TGGCTTTCCAAAA.............................26150.0710100000000
...............................................................................................................................................................AGTTGTAAACAA-TCTT-TGGCTTTCCA................................26150.0710100000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCA.................................23150.0710100000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTTCCC................................24150.0710100000000
..............................................................................................................................................................GAGTTGTAAACAA-TCTT-TGGCTA....................................23160.0610100000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-TGGCTAAA..................................26160.0610010000000
............................................................................................................................................................ACGAGTTGTAAACAA-TCTT-TGGCT.....................................24160.0610100000000
...............................................................................................................................................................AGTTGTAAACAA-TCTT-TGGCTTT...................................23160.0610100000000
..............................................................................................................................................................GAGTTGTAAACAA-TCTT-TGGCTTT...................................24160.0610100000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTT....................................20160.0610100000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCT.....................................19160.0610100000000
............................................................................................................................................................................TCTT-TGGCTTTCCAAAACGAA-----AAC.................24160.0610100000000
...............................................................................................................................................................AGTTGTAAACAA-TCTT-TGGCT.....................................21160.0610100000000
....................................................................................................................................................................TAAACAA-TCTT-TGGCTTT...................................18160.0611000000000
.................................................................................................................................................................TTGTAAACAA-TCTT-TGGCTTC...................................21160.0610010000000
...............................................................................................................................................ATTGAGCTCTTATACGAGA.........................................................19170.0610100000000
.............................................................................................................................................................CGAGTTGTAAACAA-TCTT-T.........................................19180.0610100000000
.............................................................................................................................................................................................ACGAA-----AACAATTTCAATCTTGGGC.24200.0510100000000
droWil2
CACGCAAAATAGCCTTAT-----CCC--CGATTCACACTGAG--------------------------------------CTCTA----------------------------------------------------------------------TC--------CACCATATCTT-TGGGATTGCCGAGTGAA-----AACGATTTCAATCCCAGG--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTTTGTT--------TG-----------CGAT--TCGCAGAG--------------------------------------TTTTG-----CACAGCCACATACATATG------TACATATGCAATGCAGTGTATTCAAT-----------------------------------------------------------------------T-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................G------TACATATGCAATGCAGTGT......................................................................................2012.002000000000000000000000000000000000000000000000000000000000002000
droMoj3
ATATAC-------------------------------------------------------------------------------------------------ATATG------TATGTGTGCATGTAGGCGTTCTTAAGCGTGTTTAATTACTATATG-TTCGTAGTGGG-TGCG-TCATTTTGAGAAGCAAT-----AGCAACATCAAT--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAGTTAATTC-------TTAATTGCTTAAAGT----------------------------------------------------------------------------------------------------------------------TATGGCTCAAGTATTAGCCAA-GATTTCGCTTTTTCAAAACGAA-----ATCGTTTTCTATTTTGG---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTATGGTTTTTAAATCGTTCCAGGTTTAAGTT--TTGCCCAACTCTCGTTTTCGTTATCTTCTTCGAATTTCTGGCCCAT--------TGGGGACCT--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................CTCTCGTTTTCGTTATCTTCTTCGAAT......................................................................................................................................................2711.001100000
droBip1
TACATAC------------------------------------------------------------------------------------------------ATATG------TATATATAATAATTAATCCATGCATTTCTATTTTTCTATTTCTTGTATTGAAA---------------------AGCAACACAAAAACA--------A-------SizeHit CountTotal NormTotal
No Reads
droKik1
CGGACGTT---------TTGTCCGCCTGCGGT--CCGCAAAACTTCAGTTTTTAATATTTTTTACGGAGTTTTTGTCTGC--------TGGGTAGCA-TTTATTTACTTTTACATACATAGTCAAT-----ACAGTCCACTCC--------------------------------------------------------------------A-------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGGTGC---------------------------------------------------------------------TC--------GACATATGTACATACATATG------TGTGCATAC------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAACACT--------TGTTACACGTTTACCTC--TCTCTTAACTATCGTTTACGATATCGTTAACGAAGTTTTGGTCCAC--------TGGGAAT----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGATAGT--------CGTTTTACGTTTAAGTT--TCGCGTAACTATTGTTTGCGATATCGCTAACCAACATTTGGTCAAC--------TGGGCAGTA-TGTATGTGTG------AGCGTATGT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TATATAT------------------------------------------------------------------------------------------------GTAAA------TATACGTGCAAGTTATATGACACATTATTTAGGGGCTCTTACCCAATTTATAAACAA-CTTT-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGATAGC--------CGTTTTCCGTTTAAGTT--TCGCGTAACTATCGTTTGCGATATCGCTAACGAACACTTGGTCCAC--------TGGGATATTACATCCATATA-T----TACACACATATT-------------------------------------------------------------------------------------A-------SizeHit CountTotal NormTotal
No Reads
droEug1
TGATTTT--------TGTTTTGCCCTTTTCTT--TTGCAAAG--------------------------------------ATTTATAT-ATGTATGTACATACATATG------TATGTATGCATACATATGTAAGTACT-----------------------------------------------------------------------C-------SizeHit CountTotal NormTotal
No Reads
dm3
GCCCAT----------------------------------------------------------------------------------TATGTATGTACATACATATG------TATGTATGTATGT--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................GTACATACATATG------TATG.....................................................................................................17200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droYak3
CGGACGTT---------TTGTCCGCCTAAAGT--TCGCAAAACTATCGTTTGTAATGTCATAAACGAAGTTTTTGTCTGC--------TGGGAATTATTGTTTTTACT------CACACAAGCAAG---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................ATTGTTTTTACT------CACACAAGCA...............................................................................................22200.05101000000000
droEre2
GATATGC------------------------------------------------------------------------------------------ACATACATATG------TACACATACATATATACATATACAGTTGCAGTTGGCTTTAAACCAAATTGCTA--------------------------CAAATTACA-----CAGTTTTCGG--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 02:55 PM