ID:

dpe_225

 Coordinate:

scaffold_10940:281-367 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -11.5 -10.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy10-I_Dpse-intLTRGypsy+
mature
  1. scaffold_1:5709703-5709725 -
  2. scaffold_0:9674755-9674777 -
  3. scaffold_9:2890978-2891000 +
  4. scaffold_26:765710-765732 +
  5. scaffold_30:784186-784208 -
  6. dpe_225  scaffold_10940:281-303 +
  7. dpe_226  scaffold_430:1285-1307 -
  8. scaffold_186:25841-25863 -
  9. scaffold_325:4024-4046 +
  10. scaffold_325:17611-17633 -
  11. dpe_1288  scaffold_2650:1498-1520 -
star
  1. dpe_225  scaffold_10940:312-339 +
  2. dpe_226  scaffold_430:1249-1276 -

Sense Strand Reads

GATAGTTTTACACGGCTGAGTTCCGCTTAGCTCTGCGTTTGCGATATCTTTTACGAAGTTTTGGTCCACTGGGTATCTACATACATATGTATGCATGCAAGTTAACGTACCCAATTCCATTGAGCTCTTATACGAGTTGTAAACAATCTTTGGTTTTCCAAAACGAAAACAATTTCAATCTTGGGGC
***********************************..........................(((.....(((((((...(((((....))))).............)))))))...))).....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
..................................................TTACGAAGTTTTGGTCCACTGGG.................................................................................................................. 23 0 11 9.09 100 96 1 3 0
..................................................TTACGAAGTTTTGGTCCACTGG................................................................................................................... 22 0 18 6.72 121 112 4 2 3
..................................................TTACGAAGTTTTGGTCCACTGGGTA................................................................................................................ 25 0 5 6.20 31 28 0 3 0
..................................................TTACGAAGTTTTGGTCCACTGGGT................................................................................................................. 24 0 7 2.14 15 8 5 1 1
........TACACGGCTGAGTTCCGCTTAGCTC.......................................................................................................................................................... 25 0 7 2.00 14 14 0 0 0
..................................................TTACGAAGTTTTGGTCCACTG.................................................................................................................... 21 0 18 1.94 35 31 1 2 1
..TAGTTTTACACGGCTGAGTTCCGCT................................................................................................................................................................ 25 0 7 1.57 11 10 1 0 0
........TACACGGCTGAGTTCCGCTTAGCT........................................................................................................................................................... 24 0 7 1.29 9 6 0 0 3
..................................................TTACGAAGTTTTGGTCCACTGGGTATC.............................................................................................................. 27 0 4 1.25 5 2 3 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGTAT............................................................................................................... 26 0 4 1.25 5 5 0 0 0
........TACACGGCTGAGTTCCGCTTAGC............................................................................................................................................................ 23 0 7 1.14 8 8 0 0 0
...................................................TACGAAGTTTTGGTCCACTGG................................................................................................................... 21 0 18 0.67 12 12 0 0 0
..TAGTTTTACACGGCTGAGTTCC................................................................................................................................................................... 22 0 7 0.57 4 4 0 0 0
.................................................................................TACATATGTATGCATGCAAGTTAACGTA.............................................................................. 28 0 2 0.50 1 1 0 0 0
.......TTACACGGCTGAGTTCCGCTTAGC............................................................................................................................................................ 24 0 7 0.43 3 3 0 0 0
...................................................TACGAAGTTTTGGTCCACTGGGTA................................................................................................................ 24 0 5 0.40 2 2 0 0 0
...................................................TACGAAGTTTTGGTCCACTGGG.................................................................................................................. 22 0 11 0.36 4 4 0 0 0
..................................................TTACGAAGATTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.36 4 4 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGTAA............................................................................................................... 26 1 6 0.33 2 2 0 0 0
..................................................TTACGAAGTTTTGGTCCACT..................................................................................................................... 20 0 18 0.28 5 3 2 0 0
............................................................................CTACATACATATGTATGCATGCAGG...................................................................................... 25 1 4 0.25 1 1 0 0 0
...................................................TACGAAGTTTTGGTCCACTGGGTATA.............................................................................................................. 26 1 4 0.25 1 1 0 0 0
................................................TTTTACGAAGTTTTGGTCCACTGGG.................................................................................................................. 25 0 10 0.20 2 2 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGCAT............................................................................................................... 26 1 5 0.20 1 1 0 0 0
..................................................TTACGAAGATTTGGTCCACTGGGTA................................................................................................................ 25 1 5 0.20 1 1 0 0 0
....................................................ACGAAGTTTTGGTCCACTGGGTA................................................................................................................ 23 0 5 0.20 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTGGGTA................................................................................................................ 25 1 5 0.20 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTGG................................................................................................................... 22 1 18 0.17 3 3 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGTGTA................................................................................................................ 25 1 6 0.17 1 0 0 1 0
.......TTACACGGCTGAGTTCCGCTTAGCT........................................................................................................................................................... 25 0 7 0.14 1 1 0 0 0
..TAGTTTTACACGGCTGAGTTCCGCTT............................................................................................................................................................... 26 0 7 0.14 1 1 0 0 0
.........ACACGGCTGAGTTCCGCTTAGCT........................................................................................................................................................... 23 0 7 0.14 1 1 0 0 0
........TACACGGCAGAGTTCCGCTTAGCTC.......................................................................................................................................................... 25 1 7 0.14 1 1 0 0 0
......TTTACACGGCTGAGTTCCGCTTAGC............................................................................................................................................................ 25 0 7 0.14 1 1 0 0 0
..TAGTTTTACACGGCTGAGTTCCG.................................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0
.......TTACACGGCTGAGTTCCGCTTAG............................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0
........TACACGGCTGAGTTCCGCTTAGCTCT......................................................................................................................................................... 26 0 7 0.14 1 1 0 0 0
.......TTACACGGCTGAGTTCCGCTTAGCTC.......................................................................................................................................................... 26 0 7 0.14 1 1 0 0 0
........TACACGGCCGAGTTCCGCTTAGCTC.......................................................................................................................................................... 25 1 7 0.14 1 1 0 0 0
..TAGTTTTACACGGCTGAGTTCCGC................................................................................................................................................................. 24 0 7 0.14 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTGGGT................................................................................................................. 24 1 7 0.14 1 1 0 0 0
...AGTTTTACACGGCTGAGTTCCGCT................................................................................................................................................................ 24 0 7 0.14 1 1 0 0 0
...AGTTTTACACGGCTGAGTTCCGC................................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGGGCTT............................................................................................................... 26 2 8 0.13 1 0 1 0 0
.............GGCTGAGTTCCGCTTAGCTC.......................................................................................................................................................... 20 0 8 0.13 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGA................................................................................................................... 22 1 18 0.11 2 2 0 0 0
.......................................TGCGATATCTTTTACGAAGTTTTGG........................................................................................................................... 25 0 19 0.11 2 2 0 0 0
.................................................................................................................ATTCCATTGAGCTCTTATAC...................................................... 20 0 20 0.10 2 0 2 0 0
......................................................................................................................................................TGTTTTTCCAAAACGGAAA.................. 19 2 20 0.10 2 0 2 0 0
...................................................TACGAAGTGTTGGTCCACTGGG.................................................................................................................. 22 1 11 0.09 1 1 0 0 0
..................................................TTACGAAGCTTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.09 1 1 0 0 0
..................................................GTACGAAGTTTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.09 1 1 0 0 0
..................................................TTACTAAGTTTTGGTCCACTGGG.................................................................................................................. 23 1 11 0.09 1 1 0 0 0
..................................................TTACGAAGTTTTGATCCACTGGG.................................................................................................................. 23 1 12 0.08 1 1 0 0 0
...............................................CTTTTACGCAGTTTTGGTCCACTGG................................................................................................................... 25 1 17 0.06 1 1 0 0 0
...............................................CTTTTACGAAGTTTTGGTCCAC...................................................................................................................... 22 0 17 0.06 1 1 0 0 0
.ATAGTTTTACACGGCTGAGT...................................................................................................................................................................... 20 0 18 0.06 1 1 0 0 0
..................................................TTACGAAGCTTTGGTCCACTGG................................................................................................................... 22 1 18 0.06 1 1 0 0 0
.ATAGTTTTACACGGCTGAG....................................................................................................................................................................... 19 0 18 0.06 1 1 0 0 0
..................................................TTACGAAGATTTGGTCCACTGG................................................................................................................... 22 1 18 0.06 1 1 0 0 0
....................................................ACGAAGTTTTGGTCCACTGG................................................................................................................... 20 0 18 0.06 1 1 0 0 0
..................................................TTACGAAGATTTGGTCCACTG.................................................................................................................... 21 1 18 0.06 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACTGCA.................................................................................................................. 23 2 18 0.06 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCATT..................................................................................................................... 20 1 18 0.06 1 1 0 0 0
...................................................TACGAAGTTTTGGTCCACTG.................................................................................................................... 20 0 18 0.06 1 1 0 0 0
..................................................TTACGAAGGTTTGGTCCACTG.................................................................................................................... 21 1 18 0.06 1 1 0 0 0
..................................................CTACGAAGTTTTGGTCCACTGG................................................................................................................... 22 1 18 0.06 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCAC...................................................................................................................... 19 0 19 0.05 1 1 0 0 0
.....................................TTTGCGATATCTTTTACGAAGTTT.............................................................................................................................. 24 0 19 0.05 1 1 0 0 0
......................................TTGCGATATCTTTTACGAAGT................................................................................................................................ 21 0 19 0.05 1 1 0 0 0
.....................................TTTGCGATATCTTTTACGAAGTTTTG............................................................................................................................ 26 0 19 0.05 1 1 0 0 0
..................................................TTACGAAGTTTTGGTCCACC..................................................................................................................... 20 1 19 0.05 1 0 1 0 0
.................................................................................................................ATTCCATTGAGCTCTTATACGAGTTG................................................ 26 0 20 0.05 1 1 0 0 0
.............................................................................................................................................AACAATCTTTGGTTTTCCAAAAC....................... 23 0 20 0.05 1 1 0 0 0
.....................................................................................................................CATTGAGCTCTTATACGAGTTG................................................ 22 0 20 0.05 1 1 0 0 0
..................................................................................................................TTCCATTGAGCTCTTATACGAG................................................... 22 0 20 0.05 1 1 0 0 0
.................................................................................................................ATTCCATTGAGCTCTTATACGAG................................................... 23 0 20 0.05 1 0 0 0 1
.............................................................................................................................................AACAATCTCTGGTTTTCCAAAACGA..................... 25 1 20 0.05 1 1 0 0 0
.................................................................................................................ATTCCATTGAGCTCTTATACG..................................................... 21 0 20 0.05 1 1 0 0 0
.......................................................................................................................TTGAGCTCTTATACGAGTTGTAAACAA......................................... 27 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CTATCAAAATGTGCCGACTCAAGGCGAATCGAGACGCAAACGCTATAGAAAATGCTTCAAAACCAGGTGACCCATAGATGTATGTATACATACGTACGTTCAATTGCATGGGTTAAGGTAACTCGAGAATATGCTCAACATTTGTTAGAAACCAAAAGGTTTTGCTTTTGTTAAAGTTAGAACCCCG
***************************************************************..........................(((.....(((((((...(((((....))))).............)))))))...))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
...................................GCAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 25 0 19 1.37 26 26 0 0 0
.................................................................GGTGACCCATAGATGTATGTATACAT................................................................................................ 26 0 4 1.00 4 4 0 0 0
....................................................................................................CAATTGCATGGGTTAAGGTAACT................................................................ 23 0 20 0.85 17 17 0 0 0
.............................................................ACCAGGTGACCCATAGATGTATGTAT.................................................................................................... 26 0 4 0.50 2 1 1 0 0
..............................................................CCAGGTGACCCATAGATGTATGTATACAT................................................................................................ 29 0 4 0.50 2 0 2 0 0
........................................................TCAAAACCAGGTGACCCATAGAT............................................................................................................ 23 0 4 0.50 2 2 0 0 0
.................................................................................................GTTCAATTGCATGGGTTAAGGTAACT................................................................ 26 0 20 0.50 10 10 0 0 0
.....................................................................................ATACATACGTACGTTCAATTGCATGGGT.......................................................................... 28 0 2 0.50 1 1 0 0 0
.................................................................GGTGACCCATAGATGTATGTATACATA............................................................................................... 27 0 4 0.50 2 2 0 0 0
.................................................................GGTGACCCATAGATGTATGT...................................................................................................... 20 0 4 0.50 2 2 0 0 0
..................................................................................................................................ATGCTCAACATTTGTTAGAAACC.................................. 23 0 20 0.30 6 6 0 0 0
...............................................................CAGGTGACCCATAGATGT.......................................................................................................... 18 0 4 0.25 1 0 0 0 1
...........................................................................................ACGTACGTTCAATTGCATGGGTTAAGGT.................................................................... 28 0 4 0.25 1 1 0 0 0
....................................................................GACCCATAGATGTATGTAT.................................................................................................... 19 0 4 0.25 1 1 0 0 0
.....................................................................ACCCATAGATGTATGTATACAT................................................................................................ 22 0 4 0.25 1 1 0 0 0
..............................................................CCAGGTGACCCATAGATGTA......................................................................................................... 20 0 4 0.25 1 0 1 0 0
...................................................................TGACCCATAGATGTATGTATACATA............................................................................................... 25 0 4 0.25 1 1 0 0 0
..............................................................CCAGGTGACCCATAGATGTATGTAT.................................................................................................... 25 0 4 0.25 1 1 0 0 0
..............................................................TCAGGTGACCCATAGATGTATGTATACAT................................................................................................ 29 1 4 0.25 1 0 1 0 0
...............................................................AAGGTGACCCATAGATGTATGTATACAT................................................................................................ 28 1 4 0.25 1 1 0 0 0
......AGATGTGCAGACTCAAGGG.................................................................................................................................................................. 19 3 14 0.21 3 0 0 3 0
........................................................................................................TGCATGGGTTAAGGTAACTCGAGAA.......................................................... 25 0 20 0.20 4 4 0 0 0
.....................................................................................................................................CTCAACATTTGTTAGAAACCAA................................ 22 0 20 0.20 4 0 4 0 0
.................................................................................................................................TATGCTCAACATTTGTTAGAA..................................... 21 0 20 0.15 3 3 0 0 0
...................................................................................................TCAATTGCATGGGTTAAGGT.................................................................... 20 0 20 0.15 3 3 0 0 0
.........................................................................................................................................................AAAAGGTTTTGCTTTTGTTAAAGT.......... 24 0 20 0.15 3 0 0 3 0
.................................................................................................................TAAGGTAACTCGAGAATATGCTCAACAT.............................................. 28 0 20 0.15 3 3 0 0 0
................................................................................................CGTTCAATTGCATGGGTTAAGGTAACT................................................................ 27 0 20 0.15 3 3 0 0 0
.....................................................................................................AATTGCATGGGTTAAGGTAACT................................................................ 22 0 20 0.15 3 3 0 0 0
.........TGTGCCGACTCAAGGGGAATCGAG.......................................................................................................................................................... 24 1 7 0.14 1 1 0 0 0
.......AATGTGCCGACTCAAGGCGAATCGAGA......................................................................................................................................................... 27 0 7 0.14 1 0 0 1 0
......AAATGTGCCGACTCAAGGCGAAT.............................................................................................................................................................. 23 0 7 0.14 1 1 0 0 0
..ATCAAAATGTGCCGACTCAAGGCGAAT.............................................................................................................................................................. 27 0 7 0.14 1 1 0 0 0
............................................................................................CGTACGTTCAATTGCATGGGTTAAGGT.................................................................... 27 0 7 0.14 1 1 0 0 0
....CAAAATGTGCCGACTCAAGGCGAAT.............................................................................................................................................................. 25 0 7 0.14 1 1 0 0 0
..........GTGCCGACTCAAGGCGAATC............................................................................................................................................................. 20 0 8 0.13 1 0 0 0 1
..........GTGCCGACTCAAGGCGAATCGAGA......................................................................................................................................................... 24 0 8 0.13 1 1 0 0 0
..........GTGCCGACTCAAGGCGAATCGAG.......................................................................................................................................................... 23 0 8 0.13 1 1 0 0 0
..........GTGCCGACTCAAGGCGAATCG............................................................................................................................................................ 21 0 8 0.13 1 1 0 0 0
........................................CGCTATAGAAAATGCTTCAAAACCAGGT....................................................................................................................... 28 0 17 0.12 2 2 0 0 0
..............................................AGAAAATGCTTCAAAACCAGGTGACC................................................................................................................... 26 0 17 0.12 2 0 1 0 1
....................................CAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 24 0 19 0.11 2 2 0 0 0
.....................................AAACGCTATAGAAAATGCTTCAA............................................................................................................................... 23 0 19 0.11 2 2 0 0 0
...........................................................................................................................CGAGAATATGCTCAACATTTGTTAGAAA.................................... 28 0 20 0.10 2 0 0 2 0
...................................................................................................TCAATTGCATGGGTTAAGGTA................................................................... 21 0 20 0.10 2 2 0 0 0
...................................................................................................TCAATTGCATGGGTTAAAGTAACT................................................................ 24 1 20 0.10 2 0 2 0 0
...............................................................................................ACGTTCAATTGCATGGGTTAAGGTA................................................................... 25 0 20 0.10 2 2 0 0 0
.............................................................................................................GGGTTAAGGTAACTCGAGAA.......................................................... 20 0 20 0.10 2 2 0 0 0
..................................................................................................................................................................TGCTTTTGTTAAAGTTAGAA..... 20 0 20 0.10 2 0 0 2 0
....................................................................................................................GGTAACTCGAGAATATGCTCAACATT............................................. 26 0 20 0.10 2 2 0 0 0
..............................................................................................................GGTTAAGGTAACTCGAGAATATGCT.................................................... 25 0 20 0.10 2 2 0 0 0
................................................................................................................................................................TTTGCTTTTGTTAAATTTAGAACC... 24 1 20 0.10 2 2 0 0 0
..............................................GGAAAATGCTTCAAAACCAGGTGACC................................................................................................................... 26 1 17 0.06 1 0 1 0 0
...................................GCAAACGCTATAGAAAATGCTTCAAAAC............................................................................................................................ 28 0 19 0.05 1 1 0 0 0
....................................CAAACGCTATAGAAAATGCTTCAAA.............................................................................................................................. 25 0 19 0.05 1 1 0 0 0
...................................GGAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 25 1 19 0.05 1 1 0 0 0
.....................................AAACGCTATAGAAAATGCTT.................................................................................................................................. 20 0 19 0.05 1 1 0 0 0
....................................CAAACGCTATAGAAAGTGCTTCAA............................................................................................................................... 24 1 19 0.05 1 1 0 0 0
...................................GCAAACGCTATAGAAAGTGCTTCAA............................................................................................................................... 25 1 19 0.05 1 1 0 0 0
..............................................................................................TACGTTCAATTGCATGGGTTAAGGTAACT................................................................ 29 0 19 0.05 1 0 1 0 0
.................................AAGCAAACGCTATAGAAAATGCTTCAA............................................................................................................................... 27 1 19 0.05 1 1 0 0 0
.......................................................................................................TTGCATGGGTTAAGGTAAC................................................................. 19 0 20 0.05 1 0 0 1 0
..............................................................................................TACGTTCAATTGCATGGGTTAA....................................................................... 22 0 20 0.05 1 1 0 0 0
................................................................................................CGTTCAATTGCATGGGTTAAGGTA................................................................... 24 0 20 0.05 1 1 0 0 0
...................................GCAAACGCTATAGAAATTGCTTCAA............................................................................................................................... 25 1 20 0.05 1 1 0 0 0
...................................GCATACGCTATAGAAAATGCTTCAA............................................................................................................................... 25 1 20 0.05 1 1 0 0 0
..................................................................................................................................ATGCTCAACATTTGTTAGAAACCAA................................ 25 0 20 0.05 1 1 0 0 0
....................................................................................................CAATTGCATGCATTTAGGTA................................................................... 20 3 20 0.05 1 0 0 0 1
.................................................................................................................................TATGCTCAACATTTGTTAGAAAC................................... 23 0 20 0.05 1 1 0 0 0
.........................................................................................................................CTCGAGAATATGCTCAACATTTGTT......................................... 25 0 20 0.05 1 0 0 0 1
...........................................................................................................................CGAGAATATGCTCAACATTTGT.......................................... 22 0 20 0.05 1 1 0 0 0
................................................................................................................................................................TTTGCTTTTGTTAATGTTAGAAC.... 23 1 20 0.05 1 1 0 0 0
.............................................................................................................GGGTTAAGGTAACTCGAGAATATGCT.................................................... 26 0 20 0.05 1 0 0 0 1
........................................................................................................................ACTCGAGAATATGATCAAAATTTGTT......................................... 26 2 20 0.05 1 1 0 0 0
.......................................................................................................................................CAACATTTGTTAGAAACCAAAAGGTTT......................... 27 0 20 0.05 1 1 0 0 0
.......................................ACGCTATAGAAAATGCTTCA................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
........................................CGCTATAGAAAATGCTTCAA............................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.....................................................................................................GATTGCATGGGTTAAGGTAACT................................................................ 22 1 20 0.05 1 0 0 1 0
..............................................................................................TACGTTCAATTGCATGGGTTAAGGT.................................................................... 25 0 20 0.05 1 1 0 0 0
.....................................................................................................................GTAACTCGAGAATATGCTCAACAT.............................................. 24 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_10940:231-417 + dpe_225 GATAGTTTTA----------------------CACGGCTGAGTTCCGCTTAGCTCTGCGTTTGCGATATCTTTTACGAAGTTTTGGTCCACTGGGTATCTACA--------------------TACATATGTATGCATGCAAGTTAACGTACCCAATTCCATTGAGCTCTTATACGAGTTGTAAACAATCTTTGGTTTTCCAAAACGAAAACAATTTCAATCTTGGGGC
dp5 Unknown_group_819:1767-1878 + GTATA--------------------------------------------------------------------------------------------------------------------TACATATATATATATATGTAAGTTAACGTACCCAATTCTATTGAGCTCTTATACGAGTTGTAAACAATCTTTGGCTTTCCAAAACGAAAACAATTTCAATCTTG-GGC
droBip1 scf7180000393292:4322-4385 + GTTTT------------------------------TTTACCGTTTCGCCTACCTCT-CGTTTTCGATATTTTTTACAAAGCTTTGGCCAACTAGG--------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302399:3133-3237 + GGACGTTTTG----------------------TCCGCCTGCGATCCGCAAAACTTC-AGTTTTTAATATTTTTTACGGAGTTTTTGTCTGCTGGGAATGTACA----------------TATATGCATATGTATCTATATAAGT-------------------------------------------------------------------------------------
droRho1 scf7180000773984:1688-1785 + TATCGTTTTAGGATCCGAGGCGATAGTCGTTTTACGTTTAAGTTTCGAACGATAGTTCGATTGCGATATCGCTAACGAGCATTCGGTCAACTAGGTAT-----------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000411357:39699-39801 + GATAGCCG---------------------TTTTCCGTTTAAGTTTCGCGTAACTAT-CGTTTGCGATATCGCTAACGAACACTTGGTCCACTGGGATATTACA--------------------TCCATATAT-TACACACATATTA-----------------------------------------------------------------------------------
droYak3 2L:20315678-20315790 + GGACGTTTTG----------------------TCCGCCTGAAGTCCGCAAAACTAT-CGTTTTTAATATCATAAACGGAATTTTTGTCTGCTGGGATA--ACATCCAAAAGTTGGCGTGTATGTACATATGTATGTAT-------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GATAGTTTTA----------------------CACGGCTGAGTTCCGCTTAGCTCTGCGTTTGCGATATCTTTTACGAAGTTTTGGTCCACTGGGTATCTACA--------------------TACATATGTATGCATGCAAGTTAACGTACCCAATTCCATTGAGCTCTTATACGAGTTGTAAACAATCTTTGGTTTTCCAAAACGAAAACAATTTCAATCTTGGGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................TTACGAAGTTTTGGTCCACTGGG......................................................................................................................................23119.091001960003
........................................................................TTACGAAGTTTTGGTCCACTGG.......................................................................................................................................22186.7212141123002
........................................................................TTACGAAGTTTTGGTCCACTGGGTA....................................................................................................................................2556.20310280003
........................................................................TTACGAAGTTTTGGTCCACTGGGT.....................................................................................................................................2472.1415581001
........TA----------------------CACGGCTGAGTTCCGCTTAGCTC..............................................................................................................................................................................2572.00140140000
........................................................................TTACGAAGTTTTGGTCCACTG........................................................................................................................................21181.94351311002
..TAGTTTTA----------------------CACGGCTGAGTTCCGCT....................................................................................................................................................................................2571.57111100000
........TA----------------------CACGGCTGAGTTCCGCTTAGCT...............................................................................................................................................................................2471.299063000
........................................................................TTACGAAGTTTTGGTCCACTGGGTATC..................................................................................................................................2741.255320000
........................................................................TTACGAAGTTTTGGTCCACTGGGTAT...................................................................................................................................2641.255050000
........TA----------------------CACGGCTGAGTTCCGCTTAGC................................................................................................................................................................................2371.148080000
.........................................................................TACGAAGTTTTGGTCCACTGG.......................................................................................................................................21180.67120120000
..TAGTTTTA----------------------CACGGCTGAGTTCC.......................................................................................................................................................................................2270.574040000
...........................................................................................................................TACATATGTATGCATGCAAGTTAACGTA..............................................................................2820.501010000
.......TTA----------------------CACGGCTGAGTTCCGCTTAGC................................................................................................................................................................................2470.433030000
.........................................................................TACGAAGTTTTGGTCCACTGGGTA....................................................................................................................................2450.402020000
.........................................................................TACGAAGTTTTGGTCCACTGGG......................................................................................................................................22110.364040000
........................................................................TTACGAAGTTTTGGTCCACTGGGTAA...................................................................................................................................2660.332020000
........................................................................TTACGAAGTTTTGGTCCACT.........................................................................................................................................20180.285230000
.........................................................................TACGAAGTTTTGGTCCACTGGGTATA..................................................................................................................................2640.251010000
......................................................................TTTTACGAAGTTTTGGTCCACTGGG......................................................................................................................................25100.202020000
..........................................................................ACGAAGTTTTGGTCCACTGGGTA....................................................................................................................................2350.201010000
.......TTA----------------------CACGGCTGAGTTCCGCTTAGCT...............................................................................................................................................................................2570.141010000
..TAGTTTTA----------------------CACGGCTGAGTTCCGCTT...................................................................................................................................................................................2670.141010000
.........A----------------------CACGGCTGAGTTCCGCTTAGCT...............................................................................................................................................................................2370.141010000
......TTTA----------------------CACGGCTGAGTTCCGCTTAGC................................................................................................................................................................................2570.141010000
..TAGTTTTA----------------------CACGGCTGAGTTCCG......................................................................................................................................................................................2370.141010000
.......TTA----------------------CACGGCTGAGTTCCGCTTAG.................................................................................................................................................................................2370.141010000
........TA----------------------CACGGCTGAGTTCCGCTTAGCTCT.............................................................................................................................................................................2670.141010000
.......TTA----------------------CACGGCTGAGTTCCGCTTAGCTC..............................................................................................................................................................................2670.141010000
..TAGTTTTA----------------------CACGGCTGAGTTCCGC.....................................................................................................................................................................................2470.141010000
...AGTTTTA----------------------CACGGCTGAGTTCCGCT....................................................................................................................................................................................2470.141010000
...AGTTTTA----------------------CACGGCTGAGTTCCGC.....................................................................................................................................................................................2370.141010000
...................................GGCTGAGTTCCGCTTAGCTC..............................................................................................................................................................................2080.131010000
........................................................................TTACGAAGTTTTGGTCCACTGA.......................................................................................................................................22180.112020000
.............................................................TGCGATATCTTTTACGAAGTTTTGG...............................................................................................................................................25190.112020000
...........................................................................................................................................................ATTCCATTGAGCTCTTATAC......................................................20200.102200000
.....................................................................CTTTTACGAAGTTTTGGTCCAC..........................................................................................................................................22170.061010000
.ATAGTTTTA----------------------CACGGCTGAGT..........................................................................................................................................................................................20180.061010000
.ATAGTTTTA----------------------CACGGCTGAG...........................................................................................................................................................................................19180.061010000
..........................................................................ACGAAGTTTTGGTCCACTGG.......................................................................................................................................20180.061010000
........................................................................TTACGAAGTTTTGGTCCACTGCA......................................................................................................................................23180.061010000
.........................................................................TACGAAGTTTTGGTCCACTG........................................................................................................................................20180.061010000
........................................................................TTACGAAGTTTTGGTCCAC..........................................................................................................................................19190.051010000
...........................................................TTTGCGATATCTTTTACGAAGTTT..................................................................................................................................................24190.051010000
............................................................TTGCGATATCTTTTACGAAGT....................................................................................................................................................21190.051010000
...........................................................TTTGCGATATCTTTTACGAAGTTTTG................................................................................................................................................26190.051010000
........................................................................TTACGAAGTTTTGGTCCACC.........................................................................................................................................20190.051100000
...........................................................................................................................................................ATTCCATTGAGCTCTTATACGAGTTG................................................26200.051010000
.......................................................................................................................................................................................AACAATCTTTGGTTTTCCAAAAC.......................23200.051010000
...............................................................................................................................................................CATTGAGCTCTTATACGAGTTG................................................22200.051010000
............................................................................................................................................................TTCCATTGAGCTCTTATACGAG...................................................22200.051010000
...........................................................................................................................................................ATTCCATTGAGCTCTTATACGAG...................................................23200.051001000
...........................................................................................................................................................ATTCCATTGAGCTCTTATACG.....................................................21200.051010000
.................................................................................................................................................................TTGAGCTCTTATACGAGTTGTAAACAA.........................................27200.051010000
dp5
GTATA--------------------------------------------------------------------------------------------------------------------TACATATATATATATATGTAAGTTAACGTACCCAATTCTATTGAGCTCTTATACGAGTTGTAAACAATCTTTGGCTTTCCAAAACGAAAACAATTTCAATCTTG-GGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCC............................23154.807206570000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCA...........................24153.805705610000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGC.................................22162.504003420000220
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCT................................23162.063302910000300
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCAAA.........................26151.071601330000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTC.............................22151.001501140000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCTT...............................24160.941501210000200
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCAA..........................25150.931401400000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTT..............................21160.811301210000000
................................................................................................................................................TAACGTACCCAATTCTATTGAGCTC............................................................25100.7070510001000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCAAAAC.......................28150.5380620000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCAAAA........................27150.4770700000000
...............................................................................................................................................................................GAGTTGTAAACAATCTTTGGC.................................21160.4470700000000
................................................................................................................................................TAACGTACCCAATTCTATTGAGCTCA...........................................................26110.3640300000100
...................................................................................................................................................................................TGTAAACAATCTTTGGCTTTCCA...........................23150.3350500000000
.......................................................................................................................................................CCCAATTCTATTGAGCTCTTA.........................................................2160.3320000000020
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCTTT..............................25160.3150200000300
................................................................................................................................................TAACGTACCCAATTCTATTGAGCTCT...........................................................26100.3030200000100
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCTTTCC............................27150.2740400000000
...................................................................................................................................................................................TGTAAACAATCTTTGGCTTTCCAA..........................24150.2740400000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGG..................................21160.2540300100000
................................................................................................................................................TAACGTACCCAATTCTATTGAGCT.............................................................24120.2530300000000
.................................................................................................................................................AACGTACCCAATTCTATTGAGCT.............................................................23120.2530300000000
.............................................................................................................................................AGTTAACGTACCCAATTCTATTGAGC..............................................................26120.2530200100000
................................................................................................................................................TAACGTACCCAATTCTATTGAGC..............................................................23120.2530300000000
.............................................................................................................................................AGTTAACGTACCCAATTCTATTG.................................................................23140.2130300000000
.............................................................................................................................................AGTTAACGTACCCAATTCTATTGAGCTC............................................................28100.2020110000000
...................................................................................................................................................................................TGTAAACAATCTTTGGCTTTCC............................22150.2030300000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCTA...............................24160.1930300000000
...............................................................................................................................................................................GAGTTGTAAACAATCTTTGG..................................20160.1930300000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCC................................23160.1930030000000
.......................................................................................................................................................CCCAATTCTATTGAGCTCTTATA.......................................................2360.1710000000100
.............................................................................................................................................AGTTAACGTACCCAATTCTATTGAGCT.............................................................27120.1720000000200
...............................................................................................................................................................TATTGAGCTCTTATACGAG...................................................1960.1710100000000
...............................................................................................................................................................TATTGAGCTCTTATACGAGTT.................................................2160.1710000000100
................................................................................................................................................TAACGTACCCAATTCTATTGAGCTCTTAT........................................................2960.1710100000000
................................................................................................................................................TAACGTACCCAATTCTATTGAGCTCTT..........................................................2760.1710100000000
.......................................................................................................................................................CCCAATTCTATTGAGCTCTTATAC......................................................2460.1710100000000
.......................................................................................................................................................CCCAATTCTATTGAGCTCTTAT........................................................2260.1710100000000
.............................................................................................................................................AGTTAACGTACCCAATTCTATTGA................................................................24130.1520100000010
.............................................................................................................................................AGTTAACGTACCCAATTCTATT..................................................................22140.1420200000000
..............................................................................................................................................GTTAACGTACCCAATTCTATTG.................................................................22140.1420200000000
...................................................................................................................................................................................TGTAAACAATCTTTGGCTTTC.............................21150.1320200000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCTTTC.............................26150.1320010000100
.................................................................................................................................................................TTGAGCTCTTATACGAGTTGT...............................................21160.1320000000200
...............................................................................................................................................................................GAGTTGTAAACAATCTTTGGCTT...............................23160.1320200000000
.................................................................................................................................................AACGTACCCAATTCTATTGAGCTC............................................................24100.1010100000000
............................................................................................................................................AAGTTAACGTACCCAATTC......................................................................19100.1010100000000
..................................................................................................................................................ACGTACCCAATTCTATTGAGCTCA...........................................................24110.0910100000000
.................................................................................................................................................AACGTACCCAATTCTATTGAGCTCA...........................................................25110.0910100000000
..................................................................................................................................................ACGTACCCAATTCTATTGAGCT.............................................................22120.0810100000000
.................................................................................................................................................AACGTACCCAATTCTATTGAGC..............................................................22120.0810100000000
....................................................................................................................................................................................GTAAACAATCTTTGGCTTTC.............................20150.0710100000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCAAAACG......................29150.0710100000000
.................................................................................................................................................................................GTTGTAAACAATCTTTGGCTTTCCAA..........................26150.0710100000000
.............................................................................................................................................................................ACGAGTTGTAAACAATCTTTGGCTTTCC............................28150.0710100000000
...................................................................................................................................................................................TGTAAACAATCTTTGGCTTTCCAAAA........................26150.0710100000000
................................................................................................................................................................................AGTTGTAAACAATCTTTGGCTTTCCA...........................26150.0710100000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCA............................23150.0710100000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTTCCC...........................24150.0710100000000
...............................................................................................................................................................................GAGTTGTAAACAATCTTTGGCTA...............................23160.0610100000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTTGGCTAAA.............................26160.0610010000000
.............................................................................................................................................................................ACGAGTTGTAAACAATCTTTGGCT................................24160.0610100000000
................................................................................................................................................................................AGTTGTAAACAATCTTTGGCTTT..............................23160.0610100000000
...............................................................................................................................................................................GAGTTGTAAACAATCTTTGGCTTT..............................24160.0610100000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTT...............................20160.0610100000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCT................................19160.0610100000000
............................................................................................................................................................................................TCTTTGGCTTTCCAAAACGAAAAC.................24160.0610100000000
................................................................................................................................................................................AGTTGTAAACAATCTTTGGCT................................21160.0610100000000
.....................................................................................................................................................................................TAAACAATCTTTGGCTTT..............................18160.0611000000000
..................................................................................................................................................................................TTGTAAACAATCTTTGGCTTC..............................21160.0610010000000
................................................................................................................................................................ATTGAGCTCTTATACGAGA..................................................19170.0610100000000
..............................................................................................................................................................................CGAGTTGTAAACAATCTTT....................................19180.0610100000000
............................................................................................................................................................................................................ACGAAAACAATTTCAATCTTG-GGC24200.0510100000000
droBip1
GTTTT------------------------------TTTACCGTTTCGCCTACCTCT-CGTTTTCGATATTTTTTACAAAGCTTTGGCCAACTAGG--------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGACGTTTTG----------------------TCCGCCTGCGATCCGCAAAACTTC-AGTTTTTAATATTTTTTACGGAGTTTTTGTCTGCTGGGAATGTACA----------------TATATGCATATGTATCTATATAAGT-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TATCGTTTTAGGATCCGAGGCGATAGTCGTTTTACGTTTAAGTTTCGAACGATAGTTCGATTGCGATATCGCTAACGAGCATTCGGTCAACTAGGTAT-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GATAGCCG---------------------TTTTCCGTTTAAGTTTCGCGTAACTAT-CGTTTGCGATATCGCTAACGAACACTTGGTCCACTGGGATATTACA--------------------TCCATATAT-TACACACATATTA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
GGACGTTTTG----------------------TCCGCCTGAAGTCCGCAAAACTAT-CGTTTTTAATATCATAAACGGAATTTTTGTCTGCTGGGATA--ACATCCAAAAGTTGGCGTGTATGTACATATGTATGTAT-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................TAATATCATAAACGGAATTTTTGTC.............................................................................................................................................2556.2031064101300016
...........................................................................................TGGGATA--ACATCCAAAAGTTGGCGT...............................................................................................................2533.00900100000008
...........................................................................................TGGGATA--ACATCCAAAAGTTGGCGTG..............................................................................................................2631.67504100000000
........................................................................................TGCTGGGATA--ACATCCAAAAGTTGGCG................................................................................................................2731.67503200000000
...........................................................................................TGGGATA--ACATCCAAAAGTTGGCG................................................................................................................2431.00302100000000
.......................................................................TAAACGGAATTTTTGTCTGCTGGGA.....................................................................................................................................2550.80401300000000
......TTTG----------------------TCCGCCTGAAGTCCGCAAAACTA..............................................................................................................................................................................2750.60303000000000
......................................................................ATAAACGGAATTTTTGTCTGCTGGGA.....................................................................................................................................2650.60300000000003
...........................................................................................TGGGATA--ACATCCAAAAGTTGGC.................................................................................................................2340.50201100000000
........................................................................................TGCTGGGATA--ACATCCAAAAGTTGGC.................................................................................................................2640.50202000000000
.....TTTTG----------------------TCCGCCTGAAGTCCGCAAAAC................................................................................................................................................................................2650.40202000000000
................................................................................................TA--ACATCCAAAAGTTGGCGTGTATG..........................................................................................................2530.33101000000000
...........................................................................................TGGGATA--ACATCCAAAAGTTGGCGC...............................................................................................................2530.33100100000000
...........................................................................................TGGGATA--ACATCCAAAAGTTGGCGTGT.............................................................................................................2730.33101000000000
.......................................................................................................TCCAAAAGTTGGCGTGTATGTACATA....................................................................................................2640.25101000000000
............................................................................GGAATTTTTGTCTGCTGGGATA--ACA..............................................................................................................................2540.25101000000000
....................................................................................TGTCTGCTGGGATA--ACATCCAAAAGTT....................................................................................................................2740.25100100000000
...............................................................................................................TTGGCGTGTATGTACATATGTATGTA............................................................................................2640.25100000010000
......................................................................................TCTGCTGGGATA--ACATCCAAAAGTTGGC.................................................................................................................2840.25100100000000
...............................................................................................................TTGGCGTGTATGTACATATGTATGTAT-------------------------------------------------------------------------------------------2740.25101000000000
.......................................................................TAAACGGAATTTTTGTCTGC..........................................................................................................................................2050.20100100000000
...............................................................TAATATCATAAACGGAATTTTTGTCT............................................................................................................................................2650.20101000000000
...CGTTTTG----------------------TCCGCCTGAAGTCCGCAAAA.................................................................................................................................................................................2750.20100100000000
.....TTTTG----------------------TCCGCCTGAAGTCCGCAA...................................................................................................................................................................................2350.20101000000000
................................................................AATATCATAAACGGAATTTTTGTC.............................................................................................................................................2450.20101000000000
................................TCCGCCTGAAGTCCGCAAAACTAT-............................................................................................................................................................................2450.20100100000000
........TG----------------------TCCGCCTGAAGTCCGCAAAAC................................................................................................................................................................................2350.20101000000000
...............................................................TAATATCATAAACGGAATTTTTGTCTGC..........................................................................................................................................2850.20100100000000
...............................................................TAATATCATAAACGGAATTTTTGT..............................................................................................................................................2450.20101000000000

Generated: 05/15/2015 at 02:55 PM