ID:

dpe_22

 Coordinate:

scaffold_4:1720113-1720169 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.7 -13.5 -13.4

Flybase annnotation

intron [Dper\GL17383-in]; CDS [Dper\GL17383-cds]; CDS [Dper\GL17383-cds]

No Repeatable elements found

Sense Strand Reads

AACGCAATATCAAGCTGAAGGAGCTCACTGGGGGCAGCATGGACAAGCTGGTAAGTGGGCTGCAACGTCAAAATAAACATACGTTTAGACATTGGACCAACTTACAGGTGCTGCTGGAGAAAATCAATAACTGGTGGCTCTCGTTCTGCCAGCAGAT

**************************************************((((((((....(((.(((....(((((....)))))))).)))..)).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021

embryo

 V057

head

 M042

female body

 V050

head

 V042

embryo

 V111

male body
.....................................................................................TAGACATTGGACCAACTTACAG.................................................. 22 0 1 9486.00 9486 4379 2073 1444 1187 198 205
.....................................................................................TAGACATTGGACCAACTTACA................................................... 21 0 1 1813.00 1813 215 459 472 542 83 42
.....................................................................................TAGACATTGGACCAACTTACAGT................................................. 23 1 1 547.00 547 222 108 76 71 30 40
.....................................................................................TAGACATTGGACCAACTTAC.................................................... 20 0 1 339.00 339 20 159 53 89 5 13
.....................................................................................TAGACATTGGACCAACTTACAC.................................................. 22 1 1 247.00 247 103 18 104 14 7 1
......................................................................................AGACATTGGACCAACTTACAG.................................................. 21 0 1 127.00 127 3 0 124 0 0 0
.....................................................................................TAGACATTGGACCAACTTACAA.................................................. 22 1 1 36.00 36 14 5 15 0 2 0
......................................................................................AGACATTGGACCAACTTACA................................................... 20 0 1 29.00 29 0 0 29 0 0 0
.....................................................................................TAGACATTGGACCAACTTACAGA................................................. 23 1 1 27.00 27 8 7 6 5 1 0
.....................................................................................TAGACATTAGACCAACTTACAG.................................................. 22 1 1 26.00 26 3 1 20 1 1 0
.....................................................................................TAGACATTGGACCAACTTA..................................................... 19 0 1 24.00 24 10 6 4 3 0 1
.....................................................................................TAGACATTGGACCAACTTACCG.................................................. 22 1 1 23.00 23 3 15 0 3 2 0
.....................................................................................TAGACATTGGACCAACTTACGG.................................................. 22 1 1 19.00 19 9 10 0 0 0 0
.....................................................................................TAGACATTTGACCAACTTACAG.................................................. 22 1 1 18.00 18 1 2 15 0 0 0
.....................................................................................TAGACATTGCACCAACTTACAG.................................................. 22 1 1 18.00 18 1 13 0 4 0 0
.....................................................................................TAGACATTGGGCCAACTTACAG.................................................. 22 1 1 16.00 16 5 6 0 4 1 0
.....................................................................................TAGACATTGGACCAACTGACAG.................................................. 22 1 1 16.00 16 0 15 0 1 0 0
.....................................................................................TAGACATTGGACCAACTTACAGG................................................. 23 0 1 15.00 15 15 0 0 0 0 0
.....................................................................................TAGACATTGGACAAACTTACAG.................................................. 22 1 1 14.00 14 8 5 0 1 0 0
.....................................................................................TAGACATTGGACCAACTTACAGTT................................................ 24 1 1 14.00 14 1 5 3 2 0 3
.....................................................................................TAGACATTGGACCAACTTACTG.................................................. 22 1 1 14.00 14 0 12 0 2 0 0
.....................................................................................TAGACATTGGACCACCTTACAG.................................................. 22 1 1 14.00 14 0 11 0 1 2 0
.....................................................................................TAGACATTGGACGAACTTACAG.................................................. 22 1 1 14.00 14 13 1 0 0 0 0
....................................................................................TTAGACATTGGACCAACTTACAG.................................................. 23 0 1 14.00 14 10 2 2 0 0 0
.....................................................................................CAGACATTGGACCAACTTACAG.................................................. 22 1 1 14.00 14 1 7 2 3 0 1
.....................................................................................TAGACATTCGACCAACTTACAG.................................................. 22 1 1 14.00 14 0 1 12 1 0 0
.....................................................................................TAGACATTGGACCAACTTACAT.................................................. 22 1 1 13.00 13 1 7 4 0 1 0
.........................................................................TAAACATACGTTTAGACATTGGACCAACT....................................................... 29 0 1 12.00 12 12 0 0 0 0 0
.....................................................................................TAGAAATTGGACCAACTTACAG.................................................. 22 1 1 12.00 12 0 8 1 3 0 0
....................................................................................CTAGACATTGGACCAACTTACAG.................................................. 23 1 1 12.00 12 6 2 4 0 0 0
.....................................................................................TAGGCATTGGACCAACTTACAG.................................................. 22 1 1 12.00 12 2 6 1 2 0 1
......................................................................................AGACATTGGACCAACTTACAGT................................................. 22 1 1 12.00 12 2 2 5 3 0 0
.....................................................................................TAGACATTGGACCAAATTACAG.................................................. 22 1 1 12.00 12 0 11 0 1 0 0
.....................................................................................TGGACATTGGACCAACTTACAG.................................................. 22 1 1 11.00 11 2 1 2 5 0 1
.....................................................................................TAGACATTGGACCAACTTACAGC................................................. 23 1 1 11.00 11 8 3 0 0 0 0
.......................................................................................GACATTGGACCAACTTACAG.................................................. 20 0 1 11.00 11 1 0 9 0 1 0
.....................................................................................TAGACATTAGACCAACTTACA................................................... 21 1 1 11.00 11 0 0 8 3 0 0
..................................................GTAAGTGGGCTGCAACGTCAAAA.................................................................................... 23 0 1 10.00 10 0 3 2 3 0 2
.....................................................................................TAGACATTGGAACAACTTACAG.................................................. 22 1 1 10.00 10 7 3 0 0 0 0
.....................................................................................TAGACGTTGGACCAACTTACAG.................................................. 22 1 1 10.00 10 2 3 0 4 0 1
.....................................................................................TAGACATTGGACCAACTT...................................................... 18 0 1 9.00 9 9 0 0 0 0 0
......................................................................................AGACATTGGACCAACTTACAC.................................................. 21 1 1 9.00 9 0 0 9 0 0 0
.....................................................................................TAGACATTGGACTAACTTACAG.................................................. 22 1 1 9.00 9 3 4 0 2 0 0
.....................................................................................TAGACATTGGCCCAACTTACAG.................................................. 22 1 1 9.00 9 2 3 0 3 1 0
.....................................................................................TAGACATTGGACCAACGTACAG.................................................. 22 1 1 9.00 9 1 7 0 1 0 0
.....................................................................................TAGACATTGGACCAACTTACACC................................................. 23 2 1 8.00 8 7 0 1 0 0 0
.....................................................................................TAGACAGTGGACCAACTTACAG.................................................. 22 1 1 8.00 8 0 7 0 1 0 0
.....................................................................................TAGATATTGGACCAACTTACAG.................................................. 22 1 1 8.00 8 3 1 1 3 0 0
.....................................................................................TAGACATTGAACCAACTTACAG.................................................. 22 1 1 8.00 8 3 4 0 1 0 0
.....................................................................................TAGACATTGGACCGACTTACAG.................................................. 22 1 1 8.00 8 3 2 2 1 0 0
.....................................................................................TAGACATTGGACCTACTTACAG.................................................. 22 1 1 8.00 8 0 4 0 3 1 0
..................................................GTAAGTGGGCTGCAACGTCA....................................................................................... 20 0 1 8.00 8 0 3 0 0 0 5
.....................................................................................TAGACATTGGACCCACTTACAG.................................................. 22 1 1 7.00 7 0 5 0 2 0 0
.....................................................................................TAGACATTGGACCAACCTACAG.................................................. 22 1 1 7.00 7 1 4 1 1 0 0
.....................................................................................TAGACATTGGACCAACTTGCAG.................................................. 22 1 1 7.00 7 2 4 0 0 0 1
.....................................................................................TAGACATTGGGCCAACTTACA................................................... 21 1 1 7.00 7 1 5 0 0 1 0
.....................................................................................GAGACATTGGACCAACTTACAG.................................................. 22 1 1 7.00 7 1 1 4 1 0 0
.....................................................................................AAGACATTGGACCAACTTACAG.................................................. 22 1 1 7.00 7 1 5 1 0 0 0
..................................................GTAAGTGGGCTGCAACGTCAAA..................................................................................... 22 0 1 7.00 7 0 0 1 1 0 5
.....................................................................................TAGACATTGGACCAACTTCCAG.................................................. 22 1 1 6.00 6 0 6 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACC................................................... 21 1 1 6.00 6 0 2 0 4 0 0
.........................................................................TAAACATACGTTTAGACATTGGAC............................................................ 24 0 1 6.00 6 5 0 1 0 0 0
.....................................................................................TAGACATTGGACCAACATACAG.................................................. 22 1 1 6.00 6 3 2 0 1 0 0
.....................................................................................TAGACATTGGATCAACTTACAG.................................................. 22 1 1 6.00 6 2 1 0 2 1 0
.....................................................................................TAGACATTGGACCAACTTACG................................................... 21 1 1 6.00 6 2 0 1 3 0 0
......................................................................................AGACATTGGACCAACTTAC.................................................... 19 0 1 6.00 6 0 0 6 0 0 0
.....................................................................................TAGACATTGGACCACCTTACA................................................... 21 1 1 5.00 5 0 3 0 2 0 0
....................................................................................TTAGACATTGGACCAACTTACA................................................... 22 0 1 5.00 5 0 2 1 2 0 0
.....................................................................................TAGACATTGGACCAACTTCCA................................................... 21 1 1 5.00 5 0 1 0 4 0 0
.....................................................................................TAGACATGGGACCAACTTACAG.................................................. 22 1 1 5.00 5 0 5 0 0 0 0
.....................................................................................TAGACCTTGGACCAACTTACAG.................................................. 22 1 1 5.00 5 0 0 0 5 0 0
.....................................................................................TAGACATTGGACCAACTTACACA................................................. 23 2 1 5.00 5 3 0 2 0 0 0
.....................................................................................TACACATTGGACCAACTTACAG.................................................. 22 1 1 5.00 5 4 1 0 0 0 0
.........................................................................................CATTGGACCAACTTACAG.................................................. 18 0 1 5.00 5 1 0 3 0 1 0
.....................................................................................TAGACACTGGACCAACTTACAG.................................................. 22 1 1 4.00 4 0 3 0 1 0 0
.........................................................................TAAACATACGTTTAGACATTG............................................................... 21 0 1 4.00 4 0 0 2 2 0 0
.........................................................................TAAACATACGTTTAGACATTGG.............................................................. 22 0 1 4.00 4 0 2 2 0 0 0
.....................................................................................TAGACATTGGACCAGCTTACAG.................................................. 22 1 1 4.00 4 1 3 0 0 0 0
.....................................................................................TAGACATTGGTCCAACTTACAG.................................................. 22 1 1 4.00 4 0 4 0 0 0 0
.....................................................................................TAGAAATTGGACCAACTTACA................................................... 21 1 1 4.00 4 0 4 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACAGTA................................................ 24 2 1 4.00 4 0 0 4 0 0 0
.....................................................................................TAGACATCGGACCAACTTACAG.................................................. 22 1 1 4.00 4 1 3 0 0 0 0
.....................................................................................TAGACATTGGACCCACTTACA................................................... 21 1 1 4.00 4 0 3 0 0 1 0
.........................................................................TAAACATACTTTTAGACATTGGACCA.......................................................... 26 1 1 4.00 4 4 0 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACAGAA................................................ 24 2 1 4.00 4 0 0 4 0 0 0
..................................................GTAAGTGGGCTGCAACGTCAA...................................................................................... 21 0 1 4.00 4 0 0 0 0 1 3
.....................................................................................GAGACATTGGACCAACTTACA................................................... 21 1 1 4.00 4 0 1 3 0 0 0
..................................................GTAAGTGGGCTGCAACGTCAAAAT................................................................................... 24 0 1 3.00 3 0 0 1 0 0 2
.....................................................................................TAGACATTGGACCAACTGACA................................................... 21 1 1 3.00 3 0 3 0 0 0 0
.....................................................................................TAGACAGTGGACCAACATACAG.................................................. 22 2 1 3.00 3 0 3 0 0 0 0
.....................................................................................TAGACATTGGACCACCTTAC.................................................... 20 1 1 3.00 3 0 3 0 0 0 0
.....................................................................................TAGACATTGGCCCAACTTACA................................................... 21 1 1 3.00 3 0 3 0 0 0 0
.....................................................................................CAGACATTGGACCAACTTACA................................................... 21 1 1 3.00 3 0 2 0 1 0 0
.....................................................................................TAGACATTGCACCAACTTACA................................................... 21 1 1 3.00 3 0 3 0 0 0 0
....................................................................................TTAGACATTGGACCAACT....................................................... 18 0 1 3.00 3 3 0 0 0 0 0
.............................................................................CATACGTTTAGACATTGGAC............................................................ 20 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACACAA................................................ 24 3 1 3.00 3 0 0 3 0 0 0
.....................................................................................TAGAAATTGCACCAACTTACAG.................................................. 22 2 1 3.00 3 0 2 0 1 0 0
.........................................................................TAAACATACGTTTAGACATTGGACCA.......................................................... 26 0 1 3.00 3 2 0 1 0 0 0
.....................................................................................TAGACATTGGACCAACTTATAG.................................................. 22 1 1 3.00 3 0 2 0 1 0 0
.....................................................................................TAGACGTTGGACCAACTTACA................................................... 21 1 1 3.00 3 1 2 0 0 0 0
..................................................GTAAGTGGGCTGCAACGTC........................................................................................ 19 0 1 3.00 3 0 2 0 0 0 1
.........................................................................TAAACATACGTTTAGACATTGGACC........................................................... 25 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................TAGCCATTGGACCAACTTACAG.................................................. 22 1 1 3.00 3 0 2 0 1 0 0
.....................................................................................TAGACATTGGACCAACTTACT................................................... 21 1 1 3.00 3 0 3 0 0 0 0
.....................................................................................TAGACATTGGTCCAACTTACT................................................... 21 2 1 3.00 3 0 3 0 0 0 0
..................................................GTAAGTGGGCTGCAACGT......................................................................................... 18 0 1 3.00 3 0 0 2 0 1 0
.....................................................................................TAGACATTGGTCCAACTTACA................................................... 21 1 1 3.00 3 0 1 0 2 0 0
.....................................................................................TAGACATTGGACCAACGTACA................................................... 21 1 1 3.00 3 0 3 0 0 0 0
.....................................................................................TAGACATTTGACCAACTTACAC.................................................. 22 2 1 3.00 3 0 0 3 0 0 0
.....................................................................................TAGACATTCGACCAACTTACA................................................... 21 1 1 3.00 3 0 1 2 0 0 0
.....................................................................................TAGACATGGGACCAACTGACAG.................................................. 22 2 1 3.00 3 0 3 0 0 0 0
.....................................................................................TAGACATTGTACCAACTTACA................................................... 21 1 1 3.00 3 0 2 0 1 0 0
.............................................................................................................................AATAACTGGTGGCTCTCGTTCTGCC....... 25 0 1 3.00 3 3 0 0 0 0 0
....................................................................................CTAGACATTGGACCAACTTACA................................................... 22 1 1 2.00 2 0 1 0 1 0 0
...........................................................................AACATACGTTTAGACATTGGACC........................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................TGGACATTGGACCAACTTACA................................................... 21 1 1 2.00 2 1 0 0 1 0 0
.....................................................................................TAGCAATTGGACCAACTTACAG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
......................................................................................AGACATTGGACCAACTTACAGAA................................................ 23 2 1 2.00 2 0 0 2 0 0 0
.....................................................................................TAGACATTAGACCAACTTAC.................................................... 20 1 1 2.00 2 0 0 1 1 0 0
.....................................................................................TAGACATTGGACCAACTTACAGTAA............................................... 25 3 1 2.00 2 0 0 2 0 0 0
.....................................................................................TAGAAATTGGACCAACTTACAGT................................................. 23 2 1 2.00 2 0 0 0 1 1 0
.....................................................................................TAGACATTGGACCAACTTACACT................................................. 23 2 1 2.00 2 1 1 0 0 0 0
.....................................................................................TAGACATTGGACCCACTTAC.................................................... 20 1 1 2.00 2 0 1 0 0 1 0
.....................................................................................TAAACATTGGACCAACTTACAG.................................................. 22 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................TATACATTGGACCAACTTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGAAATTGGACCAAATTACAG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACATGGGACCAACTTACTG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACTTTGGACCAACTTACAG.................................................. 22 1 1 2.00 2 0 1 0 1 0 0
.....................................................................................TAGACAGTGGACCGACTTACA................................................... 21 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACGTTGGACTAACTTACTG.................................................. 22 3 1 2.00 2 0 2 0 0 0 0
.........................................................................TAAACATACGTTTAGACATTGGACCAAC........................................................ 28 0 1 2.00 2 0 1 1 0 0 0
.....................................................................................TAGACATTGGAGCAACTTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGACATTGGACGAACTTACAGT................................................. 23 2 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGACGTTGGACCAACTTAC.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGCCATTGGACTAACTTACAC.................................................. 22 3 1 2.00 2 0 2 0 0 0 0
.........................................................................TAAACATACGTTTAGACATTGGACCT.......................................................... 26 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................TTGACATTGGACCAACTTACAG.................................................. 22 1 1 2.00 2 0 0 0 2 0 0
.........................................................................TAAACATACGTTTAGACATTGGACCAA......................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGACATTGGACAAACTGACA................................................... 21 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACATTGGACTAACTTACTG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACCGT................................................. 23 2 1 2.00 2 0 1 0 0 1 0
.....................................................................................TAGACATGGGACCAACTTAC.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACCT.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACATTGGACCATCTTACAG.................................................. 22 1 1 2.00 2 0 2 0 0 0 0
.............................................................................CATACGTTTAGACATTGGACC........................................................... 21 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGACATTTGACCAACTTACA................................................... 21 1 1 2.00 2 0 0 2 0 0 0
.....................................................................................TAGACATTGGACCAACTTACAGAAA............................................... 25 3 1 2.00 2 1 0 1 0 0 0
.....................................................................................TAGACATTGGACAAACTGACAG.................................................. 22 2 1 2.00 2 0 1 0 1 0 0
.....................................................................................TAGACATTGGGCCAACTTACAGT................................................. 23 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................TACATTGGACCAACTTACAG.................................................. 20 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGACATTGGACCAGCTTACTG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................GAGACCTTGGACCAACTTACAG.................................................. 22 2 1 2.00 2 0 2 0 0 0 0
.....................................................................................TAGACATTGGACCACCTTACCG.................................................. 22 2 1 2.00 2 0 1 0 1 0 0
.....................................................................................TAGACATTGGACAAACTTACA................................................... 21 1 1 2.00 2 1 0 0 1 0 0
...................................................TAAGTGGGCTGCAACGTCA....................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0
...................................................................................TTTAGACATTGGACCAACT....................................................... 19 0 1 2.00 2 2 0 0 0 0 0
.............................................................................CATACGTTTAGACATTGGACCA.......................................................... 22 0 1 2.00 2 2 0 0 0 0 0
.............................................................................CATACGTTTAGACATTGGACCAACTT...................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTCAAG.................................................. 22 2 1 2.00 2 0 1 0 0 1 0
.....................................................................................TAGACCTTGGACCAACTTACA................................................... 21 1 1 2.00 2 0 0 0 2 0 0
...................................................................................GATAGACATTGGACCAACTTACAGT................................................. 25 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACATTCGACCAACTCACAG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATGGGTCCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTCGACAAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAAACATTGGACCAACTTACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGCCCAACTTAAA................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGGTCCAACCTACTG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTACCAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAAACATCGGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACTTTGGACCAACTTACA................................................... 21 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACACTGGACCAACTTACC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................AAACATACGTTTAGACATTGGACCA.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACTC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACGTTTGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGGCATTGCACCAACTGACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................GAGCCATTGGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
.....................................................................................TAGACATTTGACCAACTTACAGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACATAGGACCAACTCACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGTACCACCTTAC.................................................... 20 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGCCATTGGACCAACTTACTG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGCCCAACTTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTCACAG.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGCCATTGGGCCAACTTACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................AAGACATTGTACCAACTTACA................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGGACCAAATTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGCCATTGCACCAACTTAC.................................................... 20 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGAACAAATTACAG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAAACATTGGACCAACTTACAC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTTGCCCAACTTACAG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGGACTAACTTACAC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................CATCCATTGGACCAACTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TCGACATTGGACCACCTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTTC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGGCCAACTGAC.................................................... 20 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTTCA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTCCGG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACAGTGGACCAACGTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTTGACCAACTTACAGTA................................................ 24 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACATTGGTCCAACTTACAT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGCCCAACTTACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TGGACATTGGACTAACTTACTG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGGCCAACTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGGACCAACTTGCA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTACAGTC................................................ 24 2 1 1.00 1 0 0 1 0 0 0
..............................................................................ATCCGTCTAGACATTGGACCAACTTACAG.................................................. 29 2 1 1.00 1 0 0 1 0 0 0
.........................................................................TAAACATACGTTTAGACATTGGCCC........................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................TAGCCATGGGACCAACTTACTG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAATTTACAT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTAA.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAATGTACGG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.........................................................................TAAACATACGTTTAGACATTGGAA............................................................ 24 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................TGGAAATTGGACCAACTTACA................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGAAATTGGACCACCTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
....................................................................................TTAGACATTGGACCAACTTAC.................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACACCGGACCATCTTACA................................................... 21 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TCGACATTGGACCAACTTACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTAAAT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAAATTGGACTAACTTACAGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGCACAACCTTACAG.................................................. 22 3 1 1.00 1 0 0 0 1 0 0
.....................................................................................AAGACATTGGACCAACTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
......................................................................................AGACATTGGACCAACTTACACC................................................. 22 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACATTGGCCCAACCTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.........................................................................TAAACATAGGTTTAGACATTG............................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................TGGACTGTGGACCAACTTACAG.................................................. 22 3 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACGTTGGGCCAACTTACAGA................................................. 23 3 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGGACCAACTTACCA.................................................. 22 2 1 1.00 1 0 0 0 0 1 0
.....................................................................................CAGACGTTGGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGCACCAACTTACAGC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCTACTTGCAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACAGTGGACCAACTTACCG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATGGGACCAACCTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACGTTGGACCAACTTACG................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTAGACCAACTTACAC.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
................................................................................ACGTTTAGACATTGGACCAACTTACAC.................................................. 27 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACCTTGGACCAACTTCCAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TACAAATTGGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATGGGACCAACTCACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
....................................................................................TTAGACATGGGACCATCTTACA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATGGGACCAAATTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTCCCGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTAGACCAACTTACAT.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACATTGGACCAAATTACC................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCACCTTACTG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................AAGACATTGGACCCACTTACCG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGCCATTGCACCGACTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACTGACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTCAACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TGGACATTGGGTCAACTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCCACTTACCG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATGGGTCCAACTTATAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................CAGACATGGCACCAACTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGCACCAACGTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCACCTTACAC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACAATGGACCAACTTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACGTTGGACTAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACAGTGGAACAACGTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................CAGACATTGCACCACCTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAAATTGGACGAACTTACAG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGTACCACCTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TCGACATTGGACCAACTTACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACTAACTTACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
....................................................................................GTAGACATTGGACCAACTTACAG.................................................. 23 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGAAATTGGACCAACTTCCAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGGCATTGGACCAACTTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGAACAACTTACT................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGGCCAACTTACT................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAGCTTGGACCAACTCACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTTTACCAACTTACAG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGACATTGTACCAACTTACATC................................................. 23 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACGTGGGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAAATTGGACCAACATACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TATACATTGGACCAACTTACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................GAGACATTGGACCAACTGACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGAACCATGTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................AAGACATTCGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCTATTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGAACAATGTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAAACATTGGACCAACGTAGAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACACTGGACCAACTGACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGGCATGGGACCAACTGACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................AAGACATGGGACCAACTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGTCCAACGTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACGAGGGACCAACTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAAATTGGACCAACTT...................................................... 18 1 1 1.00 1 0 0 0 0 1 0
.....................................................................................TAGACAGTGGACCAACTTACG................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TCGACATTGGACCAACTTACCG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATAGGACCAACCTACCG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATAGCACCAGCTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TGGCCATTGGACCAACTTACCG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACCTTGGACCAACTTACAT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAAATTGGACCAACTGACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGAGATGGGACCAACGTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
......................................................................................AGACATTGGACCAACTTACAA.................................................. 21 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................TAGACATTGGCCCCACTTACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTCGACCAACTTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACGTTGGACTAACTTACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGGACCAACTTATC................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................TAGGCATTGGGCCAACTTACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACAATGGAGCATCTTACAG.................................................. 22 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................TAGACATTGAACCATCTTACAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

TTGCGTTATAGTTCGACTTCCTCGAGTGACCCCCGTCGTACCTGTTCGACCATTCACCCGACGTTGCAGTTTTATTTGTATGCAAATCTGTAACCTGGTTGAATGTCCACGACGACCTCTTTTAGTTATTGACCACCGAGAGCAAGACGGTCGTCTA

**************************************************((((((((....(((.(((....(((((....)))))))).)))..)).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V042

embryo

 M021

embryo
.TGGGTTATAGTTCGACGTC......................................................................................................................................... 19 2 2 0.50 1 1 0
........................................................................................................................................CGAGAGCAAGTCAGTCGTTTA 21 3 9 0.11 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droPer2 scaffold_4:1720063-1720220 + dpe_22 confident AACGCAATATCAAGCTGAAGGAGCTCACTGGGGGCAGCATGGACAAGCTGGTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGGTGCTGCTGGAGAAAATCAATAACTGGTGGCTCTCGTTCTGCCAGCAGATG
dp5 3:7809380-7809537 + dps_7 confident AGCGCAATATCAAGCTGAAGGAGCTCACTGGGGGCAGCATGGACAAGCTGGTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGGTGCTGCTGGAGAAAATCAATAACTGGTGGCTCTCGTTCTGCCAGCAGATG
droWil2 scf2_1100000004954:2253224-2253384 + AACGGAACATCAAACTAAAAGAACTCACTGGCGGGAGCATGGACAAATTGGTAAGTGACTTT-----C-G------------------T--TAAATGTATGTATAC--ATTTT----CTGTATAA----------------------------T-------------------------------------------------------ACGTTG------------A-CA-TCTTTAGGTACTTCTGGAGAAAATAAATAACTGGTGGCTCTCATTCTGCCAGCAAATG
droVir3 scaffold_12875:14890753-14890810 - AACGTAACATCAAGCTTAAGGAACTAACTGGCGGCAGCATGGACAAGCTAGTAAGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:8957797-8957962 + AAAGAAACATCAAACTTAAAGAGCTAACTGGCGGAAGTATGGATAAACTGGTAAGTGA---------AGA------------------GAG--AGTGA--GAGTGA-------GAGC-CAATCGT----------------------------C-------------------------------------------------------AA-TTATATTGCACTTAAATTG-TTTTTAGGTTTTGCTGGAAAAGATCAACAATTGGTGGCTATCGTTTTGTCAGCAAATG
droGri2 scaffold_15245:14911969-14912209 - AACGTAATATCAAACTGAAGGAGCTCACTGGTGGCAGCATGGACAAACTAGTAAGTGGATCAACTTCT-GAATCTAATTTTACATAATT--CATACGTATGTAAGC-----------------AATACGCTGAGTGCAAACACTTGACTCCGGAAATATATATACCAGATGAAGATAATTTAAAAATGTATAA------------------TGTT-----------CAATTCTTTTCAGGTATTGCTGGAAAAAATCAACAATTGGTGGTTATCATTCTGCCAGCAAATG
droAna3 scaffold_13266:16312605-16312771 - AGCGCAATATTAAGATAAAGGAACTAACTGGCGGCAGCTTGGACAAGCTGGTGAGTAAAAGGA--TAT-A------------------T--TAAATAT--TAAAATAAACTTA----ATACATAA----------------------------C-------------------------------------------------------AAATAA-----------TATCTTCCCTCAGGTATTGCTGGAAAAGATTAATCACTGGTGGCTTTCGTTTTGTCAGCAAATG
droBip1 scf7180000395838:151171-151331 + AGCGCAATATTAAACTCAAGGAACTAACCGGCGGCAGCTTGGACAAGCTGGTGAGTGAAAAA-----TAG------------------GAT------------TGA-------ATGA-TATTAAT-----------------------TCCTAA----------------------------------------------------T--AT-TAA------TAC--TATCCTTTTTCAGGTATTGCTGGAAAAGATAAATCACTGGTGGCTGTCATTTTGCCAGCAAATG
droKik1 scf7180000302476:1469294-1469455 + AGCGCAATATAAAGCTCAAGGAGCTGACCGGTGGCAGCATGGACAAACTGGTAAGTAGTTGG-----CTA------------------TG---AGTAG--GG-GGA-------ATGCTCTC-GAT-----------------------CCCAAC-------------------------------------------------------AACGAA-----------TA--TCATTGCAGGTCCTGCTGGAGAAGATCAACCACTGGTGGCTGTCGTTCTGCCAGCAGATG
droFic1 scf7180000453215:208144-208305 + AGCGTAATATAAAGCTCAAGGAGCTGACTGGCGGCAGCATGGACAAACTAGTAAGTTGGTGC-----TAA------------------GAA--AGTGA--CTTTGT-------GAGATCACCTAA----------------------------C-------------------------------------------------------ACTTAT-----------TATCTCCATGCAGATCCTGCTGGAAAAGATCAACCACTGGTGGCTTTCGTTCTGCCAGCAGATG
droEle1 scf7180000491240:796751-796914 - AGCGTAATATAAAGCTCAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGAAACTGCC--C-ACA------------------GAA--AGTAT--GGATAG-------AAGCTCATTTAA----------------------------C-------------------------------------------------------AAACCC-----------TTTCGCCTTGCAGATCCTGCTGGAGAAGATTAACCACTGGTGGCTCTCGTTCTGCCAGCAGATG
droRho1 scf7180000770177:85089-85250 - AGCGTAATATAAAGCTCAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGTTTCTGC-----CCA------------------GGG--AGCAC--AGATTG-------AAGCTCACTTAA----------------------------C-------------------------------------------------------ACTCCC-----------AATTGTCATGCAGATCCTTTTGGAGAAGATCAATCACTGGTGGCTCTCGTTCTGCCAGCAAATG
droBia1 scf7180000302291:1851985-1852146 - AGCGGAATATTAAGCTCAAGGAGCTCACCGGCGGAAGCATGGACAAACTGGTGAGTTTCTGC-----AAA------------------GGA--AGCGA--ACACAG-------AAGCTTACTTAA----------------------------C-------------------------------------------------------AATCTC-----------AATCGCTTTTCAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTTTCGTTCTGCCAGCAGATG
droTak1 scf7180000415088:107691-107852 + AGCGCAATATCAAGCTCAAGGAGCTTACCGGCGGCAGCATGGACAAATTGGTGAGTTGCTGC-----CAA------------------GCA--AGAAG--AAACAC-------GGGCCTGCCTAA----------------------------C-------------------------------------------------------ACACTC-----------AATCGCCTTGCAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTTTCGTTCTGCCAGCAAATG
droEug1 scf7180000409474:2825068-2825224 - AACGAAATATAAAGCTTAAGGAGCTCACTGGCGGCAGCATGGACAAACTGGTAAGTTACTGC-----CAA------------------AAG--TGTG-----ATAA-------ATGTTTTCTGAA----------------------------C---------------------------------------------------------TGTC-----------AATCCCCTTGCAGATTTTGTTGGAGAAAATCAACCACTGGTGGCTCTCTTTCTGCCAGCAGATG
dm3 chr2R:3992606-3992767 - AGCGCAATATTAAGCTCAAGGAGCTCACCGGCGGTAGCATGGACAAACTGGTAAGTTGCTGT-----TTA------------------AGG--AGCAC--ATTTAA-------AGGTTTACTCGT----------------------------C-------------------------------------------------------AACTTT-----------TATTGTCTTTTAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATG
droSim2 2r:4815708-4815869 - AGCGCAATATTAAGCTCAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGTTCCTGT-----TTA------------------CGG--AGTAT--ATTTAA-------AGGGTTACTTGT----------------------------C-------------------------------------------------------AACTTA-----------TATTGTCTTATAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATG
droSec2 scaffold_1:1636852-1637013 - AGCGCAATATTAAGCTTAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGTTCCTGT-----TTA------------------AGG--AGCAC--ATTTAA-------AGGCTTACTTAT----------------------------C-------------------------------------------------------AACTTA-----------TATTGTCTTATAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATG
droYak3 2L:16649125-16649292 - AGCGCAATATTAAGCTTAAGGAGCTTACTGGCGGCAGCATGGACAAACTGGTATGTTGCTGT-----TTA------------------GAT--AAAA-------AA-------ATG------------------------------------------------------------------------CATAATGCAAGATAAATGAATCTATTC-----------TATTGCCTTTTAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATG
droEre2 scaffold_4929:18634833-18634989 + AGCGCAATATTAAGCTCAAGGAGCTTACCGGCGGCAGCATGGACAAACTGGTATATTGCTGT-----TTA------------------GAT--AGAA-------AA-------AGGCTCACTTAT----------------------------C-------------------------------------------------------TCCTTT-----------TATTGCTTTTTAGATTTTGCTGGAAAAGATTAACCACTGGTGGCTCTCGTTCTGCCAACAAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AACGCAATATCAAGCTGAAGGAGCTCACTGGGGGCAGCATGGACAAGCTGGTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGGTGCTGCTGGAGAAAATCAATAACTGGTGGCTCTCGTTCTGCCAGCAGATGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................2219486.0094864379144419811872073205
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................2111813.0018132154728354245942
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGT..................................................231547.0054722276307110840
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAC.....................................................201339.00339205358915913
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAC...................................................221247.00247103104714181
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................211127.0012731240000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAA...................................................22136.003614152050
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................20129.00290290000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGA..................................................23127.0027861570
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTA......................................................19124.00241040361
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGG..................................................23115.00151500000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................23114.00141020020
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAT...................................................22113.0013141070
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACT........................................................29112.00121200000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGT..................................................22112.0012250320
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGC..................................................23111.0011800030
.........................................................................................................................................................G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................20111.0011191000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAA.................................................................................................................................................................................................23110.0010020332
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTT.......................................................1819.009900000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAC...................................................2119.009090000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACC..................................................2318.008710000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-A....................................................................................................................................................................................................2018.008000035
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAA..................................................................................................................................................................................................2217.007010105
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACC....................................................2116.006000420
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GAC.............................................................2416.006510000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACG....................................................2116.006210300
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAC.....................................................1916.006060000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................2215.005010220
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACA..................................................2315.005320000
..................................................................................................................................................................................................................CATTG-----------GACCAACTTACAG...................................................1815.005131000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------................................................................2114.004020200
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------G...............................................................2214.004020020
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGTA.................................................2414.004040000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGAA.................................................2414.004040000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AA...................................................................................................................................................................................................2114.004001003
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--..............................................................................................................................................................................................2413.003010002
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACT........................................................1813.003300000
.......................................................................................................CAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GAC.............................................................2013.003300000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACAA.................................................2413.003030000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCA...........................................................2613.003210000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-.....................................................................................................................................................................................................1913.003000021
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACC............................................................2513.003300000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACT....................................................2113.003000030
..................................................GTAAGTGGGCTG-----CAA------------------CGT.......................................................................................................................................................................................................1813.003021000
.................................................................................................................................................................................................................................................................AATAACTGGTGGCTCTCGTTCTGCC........2513.003300000
.....................................................................................................AACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACC............................................................2312.002200000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGAA.................................................2312.002020000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGTAA................................................2512.002020000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACT..................................................2312.002100010
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAAC.........................................................2812.002010010
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCT...........................................................2612.002200000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAA..........................................................2712.002200000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACCT...................................................2212.002000020
.......................................................................................................CAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACC............................................................2112.002200000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGAAA................................................2512.002110000
...................................................TAAGTGGGCTG-----CAA------------------CGTC-A....................................................................................................................................................................................................1912.002000020
....................................................................................................................TTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACT........................................................1912.002200000
.......................................................................................................CAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCA...........................................................2212.002200000
.......................................................................................................CAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTT.......................................................2612.002200000
....................................................................................................AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCA...........................................................2511.001100000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACTC...................................................2211.001000010
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGTC.................................................2411.001010000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAA.....................................................2011.001000010
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GAA.............................................................2411.001010000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAC.....................................................2111.001000010
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACC..................................................2211.001010000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACCA...................................................2211.001001000
.................................................................................................................ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAC...................................................2711.001010000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAA...................................................2111.001010000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTATC....................................................2111.001000100
dp5
AGCGCAATATCAAGCTGAAGGAGCTCACTGGGGGCAGCATGGACAAGCTGGTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGGTGCTGCTGGAGAAAATCAATAACTGGTGGCTCTCGTTCTGCCAGCAGATGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................22115645.0015645213655115975348081291617106410291941
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................2114251.004251292248222213340565133110141250
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGT..................................................2311364.0013644140521649131861195089178
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAC.....................................................201590.00590429129751213729247
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................211542.00542052512210254
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAC...................................................221379.00379717410624107333213
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................201191.00191019000010000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGA..................................................231178.00178080192560211035
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAA...................................................221107.00107173151711701
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGC..................................................23185.0085106516010101
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTA......................................................19146.004613232340001
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACC............................................................25142.0042010515000039
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGT..................................................22138.003803310210001
.........................................................................................................................................................G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................20131.003102601011200
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAA.................................................................................................................................................................................................23130.00300530950008
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................22128.002801800301402
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACT........................................................29127.002711169000000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GAC.............................................................24126.002601049100020
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAT...................................................22125.002501030340050
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAA..................................................................................................................................................................................................22117.00170600902000
..................................................GTAAGTGGGCTG-----CAA------------------CGT.......................................................................................................................................................................................................18116.001601410100000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................23115.00150800001231
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAC...................................................21114.001401310000000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAC.....................................................19113.001301200010000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCA...........................................................26113.00130723000001
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------G...............................................................22112.001201110000000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GA..............................................................23110.00101610100001
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--..............................................................................................................................................................................................24110.00101300005100
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGA..................................................22110.00100900000100
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGAA.................................................2419.0090810000000
.........................................................................................................................................................G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................1919.0090900000000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AA...................................................................................................................................................................................................2119.0090500202000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-.....................................................................................................................................................................................................1918.0080700001000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAA...................................................2118.0080800000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACG....................................................2117.0070231010000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAAC.........................................................2817.0070132000001
....................................................................................................................TTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................2317.0070700000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTT.......................................................1817.0071400000200
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-A....................................................................................................................................................................................................2016.0060300201000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGG..................................................2316.0061500000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTT......................................................1916.0060600000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACC..................................................2316.0060120210000
.................................................................................................T--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------................................................................2116.0060500010000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--A.............................................................................................................................................................................................2516.0060200004000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGT..................................................2415.0050000000500
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGTA.................................................2415.0050300010100
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACT..................................................2315.0050230000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACA..................................................2315.0050220100000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACT....................................................2114.0040111010000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGTAA................................................2514.0040400000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAAAA.................................................2414.0040310000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGCA.................................................2414.0040000000400
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAC.....................................................2114.0040300001000
....................................................................................................................................................................................................................TTG-----------GACCAACTTACAG...................................................1614.0040000000112
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTA......................................................1814.0040400000000
..................................................................................................................................................................................................................CATTG-----------GACCAACTTACAG...................................................1813.0030300000000
.........................................................................................................T-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAG...................................................2813.0030300000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGAAA................................................2513.0030300000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGGA.................................................2413.0030000000003
....................................................................................................AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACC............................................................2413.0030300000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACAA.................................................2413.0030300000000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTT......................................................1813.0030300000000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--AAAC..........................................................................................................................................................................................2812.0020010001000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTT.......................................................1912.0020200000000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAC...................................................2312.0020200000000
.........................................................................................................................................................G-------------------------------------------------------ACATTG-----------GACCAACTTACAGA..................................................2112.0020000000101
................................................................................................AT--AAACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACC............................................................2612.0020011000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACTG.................................................2412.0020000000020
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACT........................................................1712.0020000000002
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACC....................................................2112.0020200000000
............AGCTGAAGGAGCTCACTGGGGGCAGCA...........................................................................................................................................................................................................................................................2712.0020000000020
.................................................................................................................................................................................................................ACATTG-----------GACCAACTTACAG...................................................1912.0020200000000
......................................................................................................ACAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACT........................................................2612.0020110000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACATT..................................................2312.0020000000020
.........................................................................................................................................................G-------------------------------------------------------ACATTG-----------GACCAACTTACAGT..................................................2112.0020200000000
.....................................................................................................................TT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAA...................................................2312.0020200000000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAT...................................................2112.0020200000000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGC..................................................2212.0020001010000
............................................................................................................................................................................................................................................................AAATCAATAACTGGTGGCTCT.................2111.0010100000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTAAG....................................................2111.0010000000001
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGGC.................................................2411.0010000000001
.......................................................................................................CAT-------ACGTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTT.......................................................2611.0010100000000
..................................................GTAAGTGGGCTG-----CAA------------------CGTC-AAAAT--AA............................................................................................................................................................................................2611.0010000001000
...................................................TAAGTGGGCTG-----CAA------------------CGTC-AAAA.................................................................................................................................................................................................2211.0010100000000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACACT..................................................2211.0010100000000
......................................................................................................................T-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAGAC.................................................2411.0010000000001
....................................................AAGTGGGCTG-----CAA------------------CGTC-AAAAT--AAA...........................................................................................................................................................................................2511.0010100000000
...................................................................................................................GTTT-----A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACA....................................................2411.0010100000000
...................................................................................................................................................................................................................ATTG-----------GACCAACTTACAGT..................................................1811.0010100000000
............................................................................................................................A----------------------------G-------------------------------------------------------ACATTG-----------GACCAACTTACAAA..................................................2211.0010100000000
droWil2
AACGGAACATCAAACTAAAAGAACTCACTGGCGGGAGCATGGACAAATTGGTAAGTGACTTT-----C-G------------------T--TAAATGTATGTATAC--ATTTT----CTGTATAA----------------------------T-------------------------------------------------------ACGTTG------------A-CA-TCTTTAGGTACTTCTGGAGAAAATAAATAACTGGTGGCTCTCATTCTGCCAGCAAATGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................TCACTGGCGGGAGCATGGAC......................................................................................................................................................................................................................................................2011.00100010
.......................CTCACTGGCGGGAGCATGGACA.....................................................................................................................................................................................................................................................2211.00100100
droVir3
AACGTAACATCAAGCTTAAGGAACTAACTGGCGGCAGCATGGACAAGCTAGTAAGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
AAAGAAACATCAAACTTAAAGAGCTAACTGGCGGAAGTATGGATAAACTGGTAAGTGA---------AGA------------------GAG--AGTGA--GAGTGA-------GAGC-CAATCGT----------------------------C-------------------------------------------------------AA-TTATATTGCACTTAAATTG-TTTTTAGGTTTTGCTGGAAAAGATCAACAATTGGTGGCTATCGTTTTGTCAGCAAATGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................AGCTAACTGGCGGAAGTATGGAT......................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................A-TTATATTGCACTTAAATTG-TTTTTAG...................................................2711.001100000
droGri2
AACGTAATATCAAACTGAAGGAGCTCACTGGTGGCAGCATGGACAAACTAGTAAGTGGATCAACTTCT-GAATCTAATTTTACATAATT--CATACGTATGTAAGC-----------------AATACGCTGAGTGCAAACACTTGACTCCGGAAATATATATACCAGATGAAGATAATTTAAAAATGTATAA------------------TGTT-----------CAATTCTTTTCAGGTATTGCTGGAAAAAATCAACAATTGGTGGTTATCATTCTGCCAGCAAATGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
AGCGCAATATTAAGATAAAGGAACTAACTGGCGGCAGCTTGGACAAGCTGGTGAGTAAAAGGA--TAT-A------------------T--TAAATAT--TAAAATAAACTTA----ATACATAA----------------------------C-------------------------------------------------------AAATAA-----------TATCTTCCCTCAGGTATTGCTGGAAAAGATTAATCACTGGTGGCTTTCGTTTTGTCAGCAAATGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................................................................................................................................................................GTGGCTTTCGTTTTGTCAGCA....2111.001100000
.................................................................................................................................................................................................................................................................AATCACTGGTGGCTTTCGTTTTGTC........2511.001100000
..............ATAAAGGAACTAACTGGCGGC...............................................................................................................................................................................................................................................................2111.001010000
droBip1
AGCGCAATATTAAACTCAAGGAACTAACCGGCGGCAGCTTGGACAAGCTGGTGAGTGAAAAA-----TAG------------------GAT------------TGA-------ATGA-TATTAAT-----------------------TCCTAA----------------------------------------------------T--AT-TAA------TAC--TATCCTTTTTCAGGTATTGCTGGAAAAGATAAATCACTGGTGGCTGTCATTTTGCCAGCAAATGSizeHit CountTotal NormTotal
No Reads
droKik1
AGCGCAATATAAAGCTCAAGGAGCTGACCGGTGGCAGCATGGACAAACTGGTAAGTAGTTGG-----CTA------------------TG---AGTAG--GG-GGA-------ATGCTCTC-GAT-----------------------CCCAAC-------------------------------------------------------AACGAA-----------TA--TCATTGCAGGTCCTGCTGGAGAAGATCAACCACTGGTGGCTGTCGTTCTGCCAGCAGATGSizeHit CountTotal NormTotal
No Reads
droFic1
AGCGTAATATAAAGCTCAAGGAGCTGACTGGCGGCAGCATGGACAAACTAGTAAGTTGGTGC-----TAA------------------GAA--AGTGA--CTTTGT-------GAGATCACCTAA----------------------------C-------------------------------------------------------ACTTAT-----------TATCTCCATGCAGATCCTGCTGGAAAAGATCAACCACTGGTGGCTTTCGTTCTGCCAGCAGATGSizeHit CountTotal NormTotal
No Reads
droEle1
AGCGTAATATAAAGCTCAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGAAACTGCC--C-ACA------------------GAA--AGTAT--GGATAG-------AAGCTCATTTAA----------------------------C-------------------------------------------------------AAACCC-----------TTTCGCCTTGCAGATCCTGCTGGAGAAGATTAACCACTGGTGGCTCTCGTTCTGCCAGCAGATGSizeHit CountTotal NormTotal
No Reads
droRho1
AGCGTAATATAAAGCTCAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGTTTCTGC-----CCA------------------GGG--AGCAC--AGATTG-------AAGCTCACTTAA----------------------------C-------------------------------------------------------ACTCCC-----------AATTGTCATGCAGATCCTTTTGGAGAAGATCAATCACTGGTGGCTCTCGTTCTGCCAGCAAATGSizeHit CountTotal NormTotal
No Reads
droBia1
AGCGGAATATTAAGCTCAAGGAGCTCACCGGCGGAAGCATGGACAAACTGGTGAGTTTCTGC-----AAA------------------GGA--AGCGA--ACACAG-------AAGCTTACTTAA----------------------------C-------------------------------------------------------AATCTC-----------AATCGCTTTTCAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTTTCGTTCTGCCAGCAGATGSizeHit CountTotal NormTotal
No Reads
droTak1
AGCGCAATATCAAGCTCAAGGAGCTTACCGGCGGCAGCATGGACAAATTGGTGAGTTGCTGC-----CAA------------------GCA--AGAAG--AAACAC-------GGGCCTGCCTAA----------------------------C-------------------------------------------------------ACACTC-----------AATCGCCTTGCAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTTTCGTTCTGCCAGCAAATGSizeHit CountTotal NormTotal
No Reads
droEug1
AACGAAATATAAAGCTTAAGGAGCTCACTGGCGGCAGCATGGACAAACTGGTAAGTTACTGC-----CAA------------------AAG--TGTG-----ATAA-------ATGTTTTCTGAA----------------------------C---------------------------------------------------------TGTC-----------AATCCCCTTGCAGATTTTGTTGGAGAAAATCAACCACTGGTGGCTCTCTTTCTGCCAGCAGATGSizeHit CountTotal NormTotal
No Reads
dm3
AGCGCAATATTAAGCTCAAGGAGCTCACCGGCGGTAGCATGGACAAACTGGTAAGTTGCTGT-----TTA------------------AGG--AGCAC--ATTTAA-------AGGTTTACTCGT----------------------------C-------------------------------------------------------AACTTT-----------TATTGTCTTTTAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................AAGGAGCTCACCGGCGGTAGC............................................................................................................................................................................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GGCGGTAGCATGGACAAACTGA...............................................................................................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGCTGGAAAAGATCAACC.............................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000
................CAAGGAGCTCACCGGCGGT...............................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......TATTAAGCTCAAGGAGCTCACCGGC..................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TAAGCTCAAGGAGCTCACCGGC..................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CACTGGTGGCTCTCGTTCTGC.........2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GAAAAGATCAACCACTGGTGGC....................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAACCACTGGTGGCTCTC................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATCAACCACTGGTGGCTCTCGT..............2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AAAAGATCAACCACTGGTGGC....................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TCAACCACTGGTGGCTCTCGT..............2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GCTGGAAAAGATCAACCACTGGTGG.....................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TGGTGGCTCTCGTTCTGCCAA......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCTCAAGGAGCTCACCGGC..................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACTGGTGGCTCTCGTTCTGC.........2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................ATCAACCACTGGTGGCTCT.................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAAGGAGCTCACCGGCGGTA..............................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GAAAAGATCAACCACTGGTGG.....................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GATCAACCACTGGTGGCT...................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGCTGGAAAAGATCAACCACTGGTGGC....................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................AAGGAGCTCACCGGCGGTAGCATGGAC......................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTCACCGGCGGTAGCATGGAC......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droSim2
AGCGCAATATTAAGCTCAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGTTCCTGT-----TTA------------------CGG--AGTAT--ATTTAA-------AGGGTTACTTGT----------------------------C-------------------------------------------------------AACTTA-----------TATTGTCTTATAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................................................................................................................................................GCTCTCGTTCTGCCA.......1511.00100000000010000000
AGCGCAATATTAAGCTCAAGGA............................................................................................................................................................................................................................................................................2211.00100000001000000000
.......................................................................................................................................................................................................................................................GGAAAAGATCAACCACTGGG.......................2011.00100100000000000000
droSec2
AGCGCAATATTAAGCTTAAGGAGCTCACCGGCGGCAGCATGGACAAACTGGTAAGTTCCTGT-----TTA------------------AGG--AGCAC--ATTTAA-------AGGCTTACTTAT----------------------------C-------------------------------------------------------AACTTA-----------TATTGTCTTATAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........TAAGCTTAAGGAGCTCACCGGC..................................................................................................................................................................................................................................................................2211.0010010
droYak3
AGCGCAATATTAAGCTTAAGGAGCTTACTGGCGGCAGCATGGACAAACTGGTATGTTGCTGT-----TTA------------------GAT--AAAA-------AA-------ATG------------------------------------------------------------------------CATAATGCAAGATAAATGAATCTATTC-----------TATTGCCTTTTAGATTTTGCTGGAAAAGATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................................................................................AACCACTGGTGGCTCTCGTTCTGCC........2511.00100100000000
...GCAATATTAAGCTTAAGGAGC..........................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
AGCGCAATATTAAGCTCAAGGAGCTTACCGGCGGCAGCATGGACAAACTGGTATATTGCTGT-----TTA------------------GAT--AGAA-------AA-------AGGCTCACTTAT----------------------------C-------------------------------------------------------TCCTTT-----------TATTGCTTTTTAGATTTTGCTGGAAAAGATTAACCACTGGTGGCTCTCGTTCTGCCAACAAATGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................................................................................................................................................ACTGGTGGCTCTCGTTCTGCCAACA....2511.0011000000
....CAATATTAAGCTCAAGGAGC..........................................................................................................................................................................................................................................................................2011.0010000010

Generated: 10/20/2015 at 07:06 PM