dpe_2190

Name	Class	Family	Strand
Gypsy-3_DPer-LTR	LTR	Gypsy	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCTAATGTTACCTGCGCCCGGTTCAATCGTGTGACACCTTCAGACCTCGAGTAGGAACTCGGTCTCCAGCCGGAAAGCATCGACCCCGCCTCGGATTTAGTTCTATTTTCTATCTTTCTTTCGAAATTAGACCCGATATGCGAAACCCTGTTTTTTTATCCGCTTTATGTTTAACAATGTTCTTTTGATACGGCAAAAATGTGCAAAAGCCAATGAAATCCGGTTTAAACAAAAAGGGAATTCCTGTCGAT ****************************************************************************************************************************......(((.(((.((((((..((((....................))))..))...)))))))))).....***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	M021 embryo	V057 head	V111 male body	V042 embryo
..............................................................................................................................TTAGACCCGATATGCGAAACCCTG.....................................................................................................	24	0	20	0.60	12	12	0	0	0	0
.......................................................................................................................................................................................................TGTGCAAAAGCCAATGAAATCCG.............................	23	0	2	0.50	1	1	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCTGT....................................................................................................	26	0	20	0.30	6	0	6	0	0	0
......................TTAATCGTGTGACACCGTCC.................................................................................................................................................................................................................	20	3	5	0.20	1	0	0	1	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAAA.....................................................	27	0	15	0.20	3	2	0	0	1	0
......................................TTCAGACCTCGAGTAGGAACTCGGT............................................................................................................................................................................................	25	0	20	0.15	3	0	0	0	3	0
......................................TTCAGACCTCGAGTAGGAACTCGGTC...........................................................................................................................................................................................	26	0	20	0.15	3	3	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTTT..................................................................................................	27	0	20	0.15	3	3	0	0	0	0
..........................................................................................................................................TGCGAAACCCTGTTTTTTTATCCGCTT......................................................................................	27	0	14	0.14	2	2	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGC.........................................................	23	0	15	0.07	1	1	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCA........................................................	24	0	15	0.07	1	1	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAAAA....................................................	28	0	15	0.07	1	1	0	0	0	0
.......................................................................................................................................................................................GTCGATACGGCAAACATGTGC...............................................	21	3	20	0.05	1	0	0	1	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCC........................................................................................................................................................................................	24	0	20	0.05	1	1	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGC...............................................	24	0	20	0.05	1	0	0	0	0	1
...........................................ACCTCGAGTAGGAACTCGGTC...........................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCT......................................................................................................	24	0	20	0.05	1	1	0	0	0	0
..........................................AACCTCGAGTAGGAACTCGGTCTCC........................................................................................................................................................................................	25	1	20	0.05	1	1	0	0	0	0

GGATTACAATGGACGCGGGCCAAGTTAGCACACTGTGGAAGTCTGGAGCTCATCCTTGAGCCAGAGGTCGGCCTTTCGTAGCTGGGGCGGAGCCTAAATCAAGATAAAAGATAGAAAGAAAGCTTTAATCTGGGCTATACGCTTTGGGACAAAAAAATAGGCGAAATACAAATTGTTACAAGAAAACTATGCCGTTTTTACACGTTTTCGGTTACTTTAGGCCAAATTTGTTTTTCCCTTAAGGACAGCTA ***************************************************......(((.(((.((((((..((((....................))))..))...)))))))))).....****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M042 female body	V111 male body	V057 head	V042 embryo
................................................CTCATCCTTGAGCCAGAGGTCGGCCT.................................................................................................................................................................................	26	0	2	0.50	1	1	0	0	0
....................................................................CGGCCTTTCGTAGCTGGGGCG..................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0
.......................GTTAGCACACTGTGGAAGTCT...............................................................................................................................................................................................................	21	0	3	0.33	1	1	0	0	0
.................................TGTGGAAGTGTGGAGCTCAT......................................................................................................................................................................................................	20	1	5	0.20	1	0	1	0	0
................................CTGTGGTAGTCTGGGGATCA.......................................................................................................................................................................................................	20	3	6	0.17	1	0	0	1	0
................................................................................................................................................TTGGACCAAAAAATAGCCGAA......................................................................................	21	3	20	0.10	2	2	0	0	0
..........................................................................................................................................ACGCTTTGGGACAAAAAAAT.............................................................................................	20	0	18	0.06	1	1	0	0	0
........................................GTCTGGAGCTCATCCTTGAGC..............................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0
..................................GTGGAAGTCTGGAGCTCAT......................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0
.................................................................................................................GAAAGAAAGCTTTAATCTGGGCT...................................................................................................................	23	0	20	0.05	1	1	0	0	0
............................................GGAGCTCATCCTTGAGCCAGAGGTCG.....................................................................................................................................................................................	26	0	20	0.05	1	0	0	0	1
..................................................................................................................................AAGGCTATACGCTTTGGGACA....................................................................................................	21	2	20	0.05	1	1	0	0	0
............................................................................................................................................................................................ATGCCGTTTTTACACGTTTTCGGTT......................................	25	0	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_91:236536-236786 -	dpe_2190	CCTAATGTTACCTGCGCCCGGTTCAATCGTGTGACACCTTCAGACCTCGAGTAGGAACTCGGTCTCCAGCCGGAAAGCATCGACCCCGCCTCGGATTTAGTTCTATTTTCTATCTTTCTTTCGAAATTAGACCCGATATGCGAAACCCTGTTTTTTTATCCGCTTTATGTTTAACAATGTTCTTTTGATACGGCAAAAATGTGCAAAAGCCAATGAAATCCGGTTTAAACAAAAAGGGAATTCCTGTCGAT
dp5	Unknown_group_151:67542-67781 -		CCTAATGTTACCTGCGCCCGGTTCAATCGTGTGACACCTTCAGACCTCGAGTAGGAACTCGGTCTCCAGCCGGAAAGCATC-----------GGATTTTGTTCTATTTTCTATCTTTCTTTCGAAATTAGACCCGATATGCGAAACCCTGTTTTTTTATCCGCTTTCTGTTTAACAATGTTCTTTTGATACGGCAAAAATGTGCAAAAGCCAATGAAATCCGGTTTAAACAAAAAGGGAATTCCTGTCCAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CCTAATGTTACCTGCGCCCGGTTCAATCGTGTGACACCTTCAGACCTCGAGTAGGAACTCGGTCTCCAGCCGGAAAGCATCGACCCCGCCTCGGATTTAGTTCTATTTTCTATCTTTCTTTCGAAATTAGACCCGATATGCGAAACCCTGTTTTTTTATCCGCTTTATGTTTAACAATGTTCTTTTGATACGGCAAAAATGTGCAAAAGCCAATGAAATCCGGTTTAAACAAAAAGGGAATTCCTGTCGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................TTAGACCCGATATGCGAAACCCTG.....................................................................................................	24	20	0.60	12	0	12	0	0	0	0
.......................................................................................................................................................................................................TGTGCAAAAGCCAATGAAATCCG.............................	23	2	0.50	1	0	1	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCTGT....................................................................................................	26	20	0.30	6	6	0	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAAA.....................................................	27	15	0.20	3	0	2	0	0	0	1
......................................TTCAGACCTCGAGTAGGAACTCGGT............................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	3
......................................TTCAGACCTCGAGTAGGAACTCGGTC...........................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTTT..................................................................................................	27	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................TGCGAAACCCTGTTTTTTTATCCGCTT......................................................................................	27	14	0.14	2	0	2	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGC.........................................................	23	15	0.07	1	0	1	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCA........................................................	24	15	0.07	1	0	1	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAAAA....................................................	28	15	0.07	1	0	1	0	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCC........................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGC...............................................	24	20	0.05	1	0	0	1	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTC...........................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCT......................................................................................................	24	20	0.05	1	0	1	0	0	0	0

dp5

CCTAATGTTACCTGCGCCCGGTTCAATCGTGTGACACCTTCAGACCTCGAGTAGGAACTCGGTCTCCAGCCGGAAAGCATC-----------GGATTTTGTTCTATTTTCTATCTTTCTTTCGAAATTAGACCCGATATGCGAAACCCTGTTTTTTTATCCGCTTTCTGTTTAACAATGTTCTTTTGATACGGCAAAAATGTGCAAAAGCCAATGAAATCCGGTTTAAACAAAAAGGGAATTCCTGTCCAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGC...............................................	24	13	22.54	293	0	213	45	0	27	1	7	0	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGATACGGC.........................................................	27	9	7.56	68	0	1	0	0	0	0	0	47	20	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGCA..............................................	25	13	4.85	63	0	61	0	0	0	0	2	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTG................................................	23	13	4.62	60	0	55	0	0	4	0	1	0	0	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGATACGGC.........................................................	28	9	3.67	33	0	0	0	0	0	0	0	10	23	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGATA.............................................................	24	9	3.67	33	0	4	0	0	0	0	0	27	2	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGATAC............................................................	25	9	3.11	28	0	3	0	0	0	0	0	13	12	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGATACGG..........................................................	27	9	2.89	26	0	3	0	0	0	0	0	11	12	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTG.....................................................................................................	24	12	2.75	33	0	29	0	0	0	0	0	1	3	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGC.........................................................	23	10	2.50	25	0	23	2	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAGCCGG..................................................................................................................................................................................	27	13	2.23	29	0	26	0	0	0	0	0	2	1	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGT....................................................................................................	25	12	1.83	22	0	20	0	0	0	0	1	1	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTTT..................................................................................................	27	11	1.73	19	1	14	1	0	0	0	1	2	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAAAA....................................................	28	10	1.70	17	0	15	0	0	0	0	2	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTT...................................................................................................	26	12	1.67	20	0	16	3	0	0	0	0	1	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCA........................................................	24	10	1.60	16	0	13	0	0	0	0	1	1	1	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTTG..................................................................................................	27	12	1.50	18	0	18	0	0	0	0	0	0	0	0
............................................................................................................................................................TATCCGCTTTCTGTTTAACAATGT.......................................................................	24	4	1.25	5	0	0	0	0	0	0	0	5	0	0
..................................CACCTTCAGACCTCGAGTAGGAAC.................................................................................................................................................................................................	24	12	1.25	15	0	11	2	0	1	0	0	1	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGCAAA............................................	27	11	1.18	13	0	13	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGATACGG..........................................................	26	9	1.11	10	0	0	0	0	0	0	0	9	1	0
..............................................TCGAGTAGGAACTCGGTCTCCAGCC....................................................................................................................................................................................	25	13	1.08	14	0	13	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................CTTTTGATACGGCAAAAATGTGC...............................................	23	13	1.08	14	0	13	1	0	0	0	0	0	0	0
................................GACACCTTCAGACCTCGAGTAGGA...................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................TCGGTCTCCAGCCGGAAAGCATC-----------GGAT...........................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TAGACCCGATATGCGAAACCCTGTT...................................................................................................	25	12	1.00	12	0	9	0	0	0	0	0	0	3	0
.............................................................GTCTCCAGCCGGAAAGCATC-----------GGA............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................TCAGACCTCGAGTAGGAACTCGGT............................................................................................................................................................................................	24	11	1.00	11	0	8	0	0	2	0	0	1	0	0
...................................................TAGGAACTCGGTCTCCAGCCGGAAG...............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	24	13	0.85	11	0	11	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAA......................................................	26	10	0.80	8	0	5	0	0	0	0	0	3	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAA.......................................................	25	10	0.80	8	0	8	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCTGTTTAACAATGTTCTTTTGA...............................................................	25	9	0.78	7	0	2	0	0	0	0	0	5	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGATACG...........................................................	25	9	0.78	7	0	3	0	0	0	0	0	4	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGATACGGCA........................................................	28	9	0.78	7	0	1	0	0	0	0	0	3	3	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCT......................................................................................................	23	12	0.75	9	0	7	2	0	0	0	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCC.......................................................................................................	22	13	0.69	9	0	6	3	0	0	0	0	0	0	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGATACG...........................................................	26	9	0.67	6	0	0	0	0	0	0	0	5	1	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGAT..............................................................	23	9	0.67	6	0	2	0	0	0	0	0	4	0	0
......................................TTCAGACCTCGAGTAGGAACTCGGT............................................................................................................................................................................................	25	11	0.64	7	0	6	0	0	0	0	0	0	1	0
..............................................TCGAGTAGGAACTCGGTCTCCAG......................................................................................................................................................................................	23	13	0.62	8	0	8	0	0	0	0	0	0	0	0
...................................................................................................................................................................TTTCTGTTTAACAATGTTCTTTTG................................................................	24	9	0.56	5	0	1	0	0	0	0	0	4	0	0
......................................................................................................................TTTCGAAATTAGACCCGATATGC..............................................................................................................	23	11	0.55	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................TTTCGAAATTAGACCCGATATGCGAAA..........................................................................................................	27	11	0.55	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................GAAATTAGACCCGATATGCGAAACCC.......................................................................................................	26	11	0.55	6	0	6	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGA...............................................	24	13	0.54	7	0	7	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAGCCG...................................................................................................................................................................................	26	13	0.54	7	0	7	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGCAA.............................................	26	13	0.54	7	0	6	0	0	0	0	1	0	0	0
............................................................................................................................................................TATCCGCTTTCTGTTTAACAATGTTCT....................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGGC.........................................................	22	10	0.50	5	0	4	1	0	0	0	0	0	0	0
........................................................ACTCGGTCTCCAGCCGGAAGC..............................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TTTCGAAATTAGACCCGATATGCGAAAC.........................................................................................................	28	11	0.45	5	0	5	0	0	0	0	0	0	0	0
......................................................................................................................TTTCGAAATTAGACCCGATATGCGA............................................................................................................	25	11	0.45	5	0	4	0	0	0	0	0	0	1	0
......................................................................................................................TTTCGAAATTAGACCCGATATGCG.............................................................................................................	24	11	0.45	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGATAC............................................................	24	9	0.44	4	0	0	0	0	0	0	0	4	0	0
...................................................TAGGAACTCGGTCTCCAGCCGG..................................................................................................................................................................................	22	14	0.43	6	0	5	0	0	0	0	0	0	1	0
...........................................ACCTCGAGTAGGAACTCGGTCT..........................................................................................................................................................................................	22	14	0.43	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GATACGGCAAAAATGTGCAAAAGC.........................................	24	10	0.40	4	0	3	0	0	0	0	0	0	1	0
.......................................TCAGACCTCGAGTAGGAACTCGGTC...........................................................................................................................................................................................	25	11	0.36	4	0	3	0	0	0	0	0	1	0	0
..............................................TCGAGTAGGAACTCGGTCTCCA.......................................................................................................................................................................................	22	14	0.36	5	0	1	0	0	0	0	0	4	0	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTTGATA.............................................................	25	9	0.33	3	0	0	0	0	0	0	0	1	2	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGA...............................................................	22	9	0.33	3	0	0	0	0	0	0	0	3	0	0
.........................................................CTCGGTCTCCAGCCGGAAGC..............................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGT.................................................	22	13	0.31	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTTTTGATACGGCAAAAATGTGCA..............................................	24	13	0.31	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTAACAATGTTCTTTTGATACGGCAAAA.....................................................	28	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TGATACGGCAAAAATGTGCAAAAGC.........................................	25	10	0.30	3	0	3	0	0	0	0	0	0	0	0
..................................CACCTTCAGACCTCGAGTAGGAACT................................................................................................................................................................................................	25	11	0.27	3	0	2	0	0	1	0	0	0	0	0
......................................TTCAGACCTCGAGTAGGAACTCGG.............................................................................................................................................................................................	24	11	0.27	3	0	2	0	0	0	0	0	0	1	0
...............................................................................................................................TAGACCCGATATGCGAAACCCTGTTT..................................................................................................	26	11	0.27	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCC.......................................................................................................	23	12	0.25	3	0	2	0	0	0	0	0	1	0	0
............................................................................................................................................................TATCCGCTTTCTGTTTAACAATGTTC.....................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................CTTCAGACCTCGAGTAGGAAC.................................................................................................................................................................................................	21	12	0.25	3	0	0	0	0	0	0	2	0	1	0
..........................................................................................................................................................TTTATCCGCTTTCTGTTTAACAATG........................................................................	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	27	13	0.23	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTTTGATACGGCAAAAATGTGC...............................................	22	13	0.23	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTTTTGATACGGCAAAAATGTG................................................	22	13	0.23	3	0	3	0	0	0	0	0	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCCAG......................................................................................................................................................................................	26	13	0.23	3	0	0	0	0	0	0	0	0	3	0
...............................................CGAGTAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	23	13	0.23	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTTGATAC............................................................	26	9	0.22	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................................TTCTGTTTAACAATGTTCTTTTGATAC............................................................	27	9	0.22	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTTGATACGG..........................................................	28	9	0.22	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGATAA............................................................	25	9	0.22	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................................TTCTGTTTAACAATGTTCTTTTGA...............................................................	24	9	0.22	2	0	1	0	0	0	0	0	1	0	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTTGA...............................................................	23	9	0.22	2	0	0	0	0	0	0	0	2	0	0
...................................................TAGGAACTCGGTCTCCAGCCG...................................................................................................................................................................................	21	14	0.21	3	0	3	0	0	0	0	0	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCC........................................................................................................................................................................................	24	14	0.21	3	0	2	1	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAATGTTCTTTTGATACGGC.........................................................	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
........................................CAGACCTCGAGTAGGAACTCG..............................................................................................................................................................................................	21	15	0.20	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................GATATGCGAAACCCTGTTTTTTTATC...........................................................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGGCAA.......................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCC........................................................................................................................................................................................	21	15	0.20	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAATGTTCTTTTGATACGGCA........................................................	22	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCTGTTT..................................................................................................	28	10	0.20	2	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGG..........................................................	22	10	0.20	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTTTGATACGGCAAAAATGTGCAAAAGC.........................................	28	10	0.20	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGGCAAAA.....................................................	26	10	0.20	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGCAAAA...........................................	28	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAACAATGTTCTTTTGATACGGCAAAA.....................................................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTTTTGATACGGCAAAAATGTGCAAAA...........................................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.......................................TCAGACCTCGAGTAGGAACTCGGTT...........................................................................................................................................................................................	25	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..................................CACCTTCAGACCTCGAGTAGGAACTC...............................................................................................................................................................................................	26	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.......................................TCAGACCTCGAGTAGGAACTC...............................................................................................................................................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
......................................TTCAGACCTCGAGTAGGAACT................................................................................................................................................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TACGGCAAAAATGTGCAAAAGC.........................................	22	11	0.18	2	0	1	0	0	1	0	0	0	0	0
......................................TTCAGACCTCGAGTAGGAACTCG..............................................................................................................................................................................................	23	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCTGTT...................................................................................................	27	11	0.18	2	0	2	0	0	0	0	0	0	0	0
......................................TTCAGACCTCGAGTAGGAACTCGGTC...........................................................................................................................................................................................	26	11	0.18	2	0	1	0	0	0	0	0	0	1	0
.......................................TCAGACCTCGAGTAGGAACTCG..............................................................................................................................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..................................CACCTTCAGACCTCGAGTAGGAA..................................................................................................................................................................................................	23	12	0.17	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................AATTAGACCCGATATGCGAAACCC.......................................................................................................	24	12	0.17	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................GATATGCGAAACCCTGTTTTTTTAA............................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..................................CACCTTCAGACCTCGAGTAGG....................................................................................................................................................................................................	21	12	0.17	2	0	1	0	0	1	0	0	0	0	0
..................................CACCTTCAGACCTCGAGTAGGA...................................................................................................................................................................................................	22	12	0.17	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................................................GATATGCGAAACCCTGTTTTTT...............................................................................................	22	13	0.15	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTTGATACGGCAAAAATGTGC...............................................	21	13	0.15	2	0	2	0	0	0	0	0	0	0	0
...............................................CGAGTAGGAACTCGGTCTCCAGCC....................................................................................................................................................................................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.................................................AGTAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	21	13	0.15	2	0	2	0	0	0	0	0	0	0	0
...............................................CGAGTAGGAACTCGGTCTCCAGCCGG..................................................................................................................................................................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTGATACGGCAAAAATGTGC...............................................	20	13	0.15	2	0	1	1	0	0	0	0	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCCAGCC....................................................................................................................................................................................	28	13	0.15	2	0	2	0	0	0	0	0	0	0	0
................................................GAGTAGGAACTCGGTCTCCAGCC....................................................................................................................................................................................	23	13	0.15	2	0	2	0	0	0	0	0	0	0	0
..........................................GACCTCGAGTAGGAACTCGGT............................................................................................................................................................................................	21	15	0.13	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................TTCTTTCGAAATTAGACCCGATA.................................................................................................................	23	15	0.13	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................CGCTTTCTGTTTAACAATGTTC.....................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTTGATACG...........................................................	27	9	0.11	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................CTGTTTAACAATGTTCTTTTGAA..............................................................	23	9	0.11	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................TTCTGTTTAACAATGTTCTTTT.................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTTGATACGGCA........................................................	30	9	0.11	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................TTTCTGTTTAACAATGTTCTTTTGATA.............................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGATA.............................................................	23	9	0.11	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGA...............................................................	21	9	0.11	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................TTCTGTTTAACAATGTTCTTTTGATA.............................................................	26	9	0.11	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................CTTTCTGTTTAACAATGTTCTTTTG................................................................	25	9	0.11	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................TGTTTAACAATGTTCTTTTGAT..............................................................	22	9	0.11	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................TTTCTGTTTAACAATGTTCT....................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCTGTTTAACAATGTTCTTTT.................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................CCGCTTTCTGTTTAACAATGTTCTTT..................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................CAATGTTCTTTTGATACGGCA........................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGGCAAAAA....................................................	27	10	0.10	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................TTTGATACGGCAAAAATGTGCAAAAGC.........................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGTTCTTTTGATACGGCAAA......................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................TTTTGATACGGCAAAAATGTGCAAAAG..........................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGGCA........................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TGATACGGCAAAAATGTGCAAAAG..........................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGG..........................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................AACAATGTTCTTTTGATACGGCAAA......................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTTTT.................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TTCGAAATTAGACCCGATATGCGAAAC.........................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TTTCGAAATTAGACCCGATATGCGAA...........................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TTCGAAATTAGACCCGATATGCGAAACCC.......................................................................................................	29	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................TCAGACCTCGAGTAGGAACTCGGTA...........................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...................................ACCTTCAGACCTCGAGTAGGAACTC...............................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................GAAATTAGACCCGATATGCGAAACC........................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATACGGCAAAAATGTGCAAAAGC.........................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTTGATACGGCAAAAATGTGCAAA............................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCTT.....................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TTTCGAAATTAGACCCGATATGCGAAT..........................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TACGGCAAAAATGTGCAAAAGCCAA......................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TTCGAAATTAGACCCGATATGCGAAACC........................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTTTA.................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................TCAGACCTCGAGTAGGAACTCGG.............................................................................................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................TTCAGACCTCGAGTAGGAACTC...............................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TAAACAAAAAGGGAATTCCTGTCCAT	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................ATTAGACCCGATATGCGAAACCCTG.....................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TAAACAAAAAGGGAATTCCTGTCCA.	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
....................................CCTTCAGACCTCGAGTAGGAAC.................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................TAGACCCGATATGCGAAACCCTGT....................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................TTCAGACCTCGAGTAGGAAC.................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................TAAACAAAAAGGGAATTCCTGTCC..	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TAGACCCGATATGCGAAACCCT......................................................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGC....................................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................TAGACCCGATATGCGAAACCCTGTTG..................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................CCTTCAGACCTCGAGTAGGAA..................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TTAGACCCGATATGCGAAACCCTGTC...................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................AATTAGACCCGATATGCGA............................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................GATATGCGAAACCCTGTTTTTTT..............................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................TAGACCCGATATGCGAAACCCTG.....................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AAACAAAAAGGGAATTCCTGTCC..	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GTTCTTTTGATACGGCAAAAATG..................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAGCCA...................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................CGAGTAGGAACTCGGTCTCCAGT.....................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
................................................GAGTAGGAACTCGGTCTCCAGCCG...................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................CGATATGCGAAACCCTGTTTTTT...............................................................................................	23	13	0.08	1	0	0	1	0	0	0	0	0	0	0
..................................................GTAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAGCCGA..................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGCAT.............................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................CCTCGAGTAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................CCGATATGCGAAACCCTGTTTTT................................................................................................	23	13	0.08	1	0	0	0	0	0	0	0	1	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAGCCC...................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TAGACCCGATATGCGAAACCC.......................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTTTTTATCCGCTTTCTGTT................................................................................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGA.................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................CCTCGAGTAGGAACTCGGTCTCCAG......................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTTGATACGGCAAAAATGTGCAA.............................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAATGTGCAG.............................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTTTTGATACGGCAAAAATGT.................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................TAGGAACTCGGTCTCCAGCCGT..................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTC.........................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................CGAGTAGGAACTCGGTCTCCAA......................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0
........................................CAGACCTCGAGTAGGAACTCGGT............................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.................................................AGTAGGAACTCGGTCTCCA.......................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................CAAAAAGGGAATTCCTGTCCA.	21	14	0.07	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................AGACCCGATATGCGAAAC.........................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCTCCAA......................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...........................................ACCTCGAGTAGGAACTCGGTCTCCA.......................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................TAGGAACTCGGTCTCCAGC.....................................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................GACCTCGAGTAGGAACTCGGTCT..........................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTTTTGATACGGCAAAAAT...................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................CTCGAGTAGGAACTCGGTCTCC........................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTCTTTTGATACGGCAAAA.....................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................TCGAGTAGGAACTCGGTCT..........................................................................................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TTCTTTCGAAATTAGACCCGA...................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................AGGAACTCGGTCTCCAGCCGG..................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0

dpe_2190

scaffold_91:236586-236736 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.8	-4.4	-4.4