ID:

dpe_215

 Coordinate:

scaffold_3856:1405-1460 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.0 -17.8 -17.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_11:784082-784103 +
  2. scaffold_86:126585-126606 +
  3. scaffold_86:133006-133027 +
  4. scaffold_11802:272-293 +
  5. scaffold_270:23304-23325 +
  6. scaffold_215:17787-17808 +
  7. scaffold_183:2727-2748 +
  8. scaffold_107:82068-82089 +
  9. scaffold_3003:1408-1429 +
  10. scaffold_248:25690-25711 +
  11. scaffold_303:9073-9094 +
  12. scaffold_3790:1458-1479 +
  13. dpe_215  scaffold_3856:1437-1458 +
  14. scaffold_1554:3230-3251 +
  15. scaffold_1727:368-389 +
  16. scaffold_2068:3286-3307 +
  17. scaffold_2256:672-693 +
  18. scaffold_333:18796-18817 +
  19. scaffold_9396:8-29 +
  20. scaffold_229:9001-9022 +
  21. scaffold_49:510452-510473 +
  22. scaffold_270:14908-14929 +
  23. scaffold_107:86815-86836 +
  24. scaffold_573:2014-2035 +
  25. scaffold_737:4283-4304 +
  26. scaffold_3543:1915-1936 +
  27. scaffold_1166:4490-4511 +
  28. scaffold_1709:4541-4562 +
  29. scaffold_1847:4019-4040 +
  30. scaffold_7299:316-337 +
star
  1. scaffold_71:13503-13525 +
  2. scaffold_59:105346-105368 +
  3. scaffold_11604:211-233 +
  4. scaffold_122:84716-84738 +
  5. scaffold_95:4828-4850 +
  6. scaffold_107:86755-86777 +
  7. scaffold_303:9013-9035 +
  8. scaffold_573:1954-1976 +
  9. scaffold_737:4223-4245 +
  10. scaffold_3543:1855-1877 +
  11. scaffold_1166:4430-4452 +
  12. dpe_215  scaffold_3856:1405-1427 +
  13. scaffold_1709:4481-4503 +
  14. scaffold_1847:3959-3981 +
  15. scaffold_4760:1947-1969 +
  16. scaffold_5802:1421-1443 +
  17. scaffold_5885:1454-1476 +
  18. scaffold_7299:256-278 +
  19. scaffold_229:19340-19362 +
  20. scaffold_10049:516-538 +

Sense Strand Reads

GACTAAAACAACCAGGGACAAACAAAGAATTAACCACTGTAAGGAAGTTCTCAGGCCGAGGTACAGCTTCTCAGTCAAAATTTGTTGTGTGAGGACCTAAGGGGATAGCCGCTCGTGGCGAAAGCGCGCCCGTGGGGTGGATCGTGGGACGGTCGG
***********************************.......((..(((((((((((....((((((................))))))...)).)))..))))))..)).........************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 M021
embryo
 V057
head
 V050
head
..................................................................................TGTTGTGTGAGGACCTAAGGGG.................................................... 22 0 20 19.70 394 347 0 47 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGGAT.................................................. 24 0 1 14.00 14 3 4 4 3 0 0
..................................................................................TGTTGTGTGAGGACCTAAGG...................................................... 20 0 20 5.55 111 107 0 4 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGGTT.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGGATC................................................. 25 1 1 2.00 2 0 2 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTG................. 24 0 20 1.85 37 35 2 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGG................... 22 0 20 1.20 24 24 0 0 0 0 0
..................................................TCAGGCCGCGGTACAGCTTCTCAGTCAA.............................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
...................................................................................GTTGTGTGAGGACCTAAGGGGTT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................TTGTTGTGTGAGGACCTAAGGGGAT.................................................. 25 0 1 1.00 1 0 0 1 0 0 0
...............................................................CAGCTTCTCAGTCAAAATTTGT....................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGGATCC................................................ 26 2 1 1.00 1 0 1 0 0 0 0
.....................................TGTAAGGAAGTTCTCAGGCCGAGG............................................................................................... 24 0 20 0.80 16 16 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGT.................. 23 0 20 0.70 14 12 2 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGGGGTGG................ 24 0 20 0.60 12 10 2 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGA............... 26 0 20 0.55 11 7 3 1 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGGT................................................... 23 1 20 0.55 11 11 0 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCGC........................... 20 0 20 0.50 10 7 0 3 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGAGG............................................................................................... 22 0 20 0.45 9 9 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGG................ 25 0 20 0.35 7 0 7 0 0 0 0
..................................................................................TGTTGTGTTAGGACCTAAGGGGA................................................... 23 1 20 0.35 7 6 1 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGGTGG................ 22 0 20 0.30 6 4 2 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCGCCC......................... 22 0 20 0.25 5 5 0 0 0 0 0
....................................CTGTAAGGAAGTTCTCAGGCCGAGG............................................................................................... 25 0 20 0.25 5 5 0 0 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGAGGTA............................................................................................. 24 0 20 0.25 5 5 0 0 0 0 0
.........................................................................................................................................TGGATCGTGGGACGGTCGG 19 0 20 0.25 5 5 0 0 0 0 0
...............................................................................................................................GCCCGTGGGGTGGATCGTGG......... 20 0 20 0.25 5 5 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGT.................... 21 1 20 0.20 4 2 0 2 0 0 0
............................................................................................................................CGCGCCCGTGGGGTGGATCGTGG......... 23 0 20 0.20 4 4 0 0 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGAGGTACAG.......................................................................................... 27 0 20 0.20 4 4 0 0 0 0 0
...............................................................................................................................GCCCGTGGGGTGGATCGTGGGACGG.... 25 0 20 0.20 4 4 0 0 0 0 0
.................................................................................TTGTTGTGTGAGGACCTAAGGGG.................................................... 23 0 20 0.20 4 4 0 0 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGAGGTACA........................................................................................... 26 0 20 0.20 4 4 0 0 0 0 0
...............................................................................................................................GCCCGTGGGGTGGATCGTG.......... 19 0 20 0.15 3 3 0 0 0 0 0
......................................GTAAGGAAGTTCTCAGGCCG.................................................................................................. 20 0 20 0.15 3 3 0 0 0 0 0
..................................................................................CGTTGTGTGAGGACCTAAGGGGA................................................... 23 1 20 0.15 3 3 0 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGGG.................... 20 0 20 0.15 3 3 0 0 0 0 0
..............................................................................................................GCTCGTGGCGAAAGCGCGCCCGTG...................... 24 0 20 0.15 3 1 0 2 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGT...................................................... 20 1 20 0.15 3 0 3 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCG............................ 19 0 20 0.15 3 3 0 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGGGGTGGA............... 25 0 20 0.15 3 3 0 0 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGAA................................................... 23 1 20 0.15 3 3 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTA................. 24 1 20 0.15 3 1 0 2 0 0 0
..............................................................................................................................CGCCCGTGGGGTGGATCGTG.......... 20 0 20 0.15 3 3 0 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCGCCCGTGG..................... 26 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................TGGATCGTGGGACGGTCG. 18 0 20 0.15 3 3 0 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGGGG................... 21 0 20 0.15 3 3 0 0 0 0 0
..................................CACTGTAAGGCCGTTCTCACGC.................................................................................................... 22 3 7 0.14 1 0 0 0 0 1 0
.........................GGAATGAACCACTGCAAGGA............................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0
................................................................................TTTGTTGTGTGAGGACCTAAGGGGA................................................... 25 0 20 0.10 2 1 1 0 0 0 0
................................................................................................................................CCCGTGGGGTGGATCGTGGG........ 20 0 20 0.10 2 2 0 0 0 0 0
..................................................................................TGTTGTGTCAGGACCTAAGGG..................................................... 21 1 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................TGGGGTGGATCGTGGGACGGT... 21 0 20 0.10 2 1 1 0 0 0 0
.................................................................................TTGTTGTGTGAGGACCTAAGGGGT................................................... 24 1 20 0.10 2 0 2 0 0 0 0
.....................................TGTAAGGAAGTTCTCAGGC.................................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................TCGTGGCGAAAGCGCGCCCGTGGG.................... 24 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGGGGTGGATC............. 27 0 20 0.10 2 1 1 0 0 0 0
...........................................................................CAAAATTTGTTGTGTGAGGACCTAAGG...................................................... 27 0 20 0.10 2 2 0 0 0 0 0
............................................................................AAAATTTGTTGTGTGAGGACCTAAGG...................................................... 26 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGGTG................. 21 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................CGTGGCGAAAGCGCGCCCGTGGGG................... 24 0 20 0.10 2 2 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGA.................... 21 1 20 0.10 2 1 0 1 0 0 0
....................................................................................................................................TGGGGTGGATCGTGGGACGGTC.. 22 0 20 0.10 2 1 0 0 0 0 1
.....................................TGTAAGGAAGTTCTCAGGCCGAG................................................................................................ 23 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................TCGTGGCGAAAGCGCGCCCGTGG..................... 23 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGG................... 19 0 20 0.10 2 0 0 2 0 0 0
..................................................................................................................GTGGCGAAAGCGCGCCCGTGGGGTGGA............... 27 0 20 0.10 2 1 1 0 0 0 0
...................................ACTGTAAGGAAGTTCTCAGGCCGAGG............................................................................................... 26 0 11 0.09 1 1 0 0 0 0 0
...................................ACTGTAAGGAAGTTCTCAGGCCGAGGT.............................................................................................. 27 0 11 0.09 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGAG................... 22 1 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................GCCCGTGGGGTGGATCGTGA......... 20 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................GGCGAAAGAGCGCCCGTGGGGTGG................ 24 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................CCGTGGGGTGGATCGTGG......... 18 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................GCCGCTCGTGGCGAAAGCGCGCCCG........................ 25 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................GCTCGTGGCGAAAGCGCGCCCGTGG..................... 25 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGAA.............. 27 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................GCCCGTGGGGTGGATCGTGGGACG..... 24 0 20 0.05 1 1 0 0 0 0 0
..................................................................................AGTTGTGTGAGGACCTAAGG...................................................... 20 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGGTGGA............... 23 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................TAAGGGGAAAGCCGCTCGTGT...................................... 21 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TAGCGAAAGCGCGCCCGTGGGGTGG................ 25 1 20 0.05 1 1 0 0 0 0 0
.....................................TGTAAGGAAGTTCTCAGGCCGAGGT.............................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
........................................AAGGAAGTTCTCAGGCCGAGGTACC........................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.................................................................................TTGTTGTGTGAGGACCTAAGGG..................................................... 22 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................CTCGTGGCGAAAGCGCGCCA......................... 20 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................GAAAGCGCGCCCGTGGGGTGGATCG............ 25 0 20 0.05 1 0 1 0 0 0 0
................................................................................TTTGTTGTGTGAGGACCTAAGGG..................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGC................ 25 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCGCCA......................... 22 1 20 0.05 1 0 0 1 0 0 0
................................................................................TTTGTTGTATGAGGACCTAAGG...................................................... 22 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCAAAAGCGCGCCCGTGGGGTGGA............... 26 1 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTTGTGTGAGCACCTAAGGGG.................................................... 22 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGAG.................... 21 1 20 0.05 1 0 0 1 0 0 0
............................................................................................................................CGCGCCCGTGGGGTGGATCGT........... 21 0 20 0.05 1 1 0 0 0 0 0
..................................................TCAGGCCGAGGTACAGCTTCTCCGT................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0
............................................AAGTTCTCAGGCCGAGGTACAG.......................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................GTGGGGTGGATCGTGGGACGGTCG. 24 0 20 0.05 1 1 0 0 0 0 0
............................................................................AAAATTTGGTGTGTGAGGACCTAAGG...................................................... 26 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................CGTGGGGTGGATCGTGGGACGGTC.. 24 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAATCGCGCCCGTGGGATGG................ 25 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCAAAAGCGCGCCCGTGGGGTGG................ 25 1 20 0.05 1 1 0 0 0 0 0
.....................................TGTAAGGAAGTTCTCAGGCCGTA................................................................................................ 23 2 20 0.05 1 1 0 0 0 0 0
..................................................................................................................GTGGCGAAAGCGCGCCCGTGGGT................... 23 1 20 0.05 1 0 0 1 0 0 0
..................................................................................................................GTGGCGAAAGCGCGCCCGTGGGGTGG................ 26 0 20 0.05 1 1 0 0 0 0 0
.................................................................................GTGTTGTGTGAGGACCTAAGG...................................................... 21 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................GAAAGCGCGCCCGTGGGGTGGATCC............ 25 1 20 0.05 1 0 1 0 0 0 0
......................................................................................GTGTGAGGACCTAAGGGGA................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGA................ 25 1 20 0.05 1 0 0 1 0 0 0
..............................................................................AATTTGTTGTGTGAGGACCTAAGGG..................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGA...................................................... 20 1 20 0.05 1 1 0 0 0 0 0
...................................................................................GTTGTGTGAGGACCTAAGG...................................................... 19 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGATT............. 28 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................GCCGCTCGTGGCGAAAGCGCG............................ 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGG.................... 21 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCGCCCGTGA..................... 26 1 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTTGTGTGAGGACCTAA........................................................ 18 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................GCTCGTGGCGAAAGCGCGCCA......................... 21 1 20 0.05 1 0 0 1 0 0 0
.............................................................................AAATTTGTGGTGTGAGGACCTAAGG...................................................... 25 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................TGGGGTGGATCGTGGGACGG.... 20 0 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................CCGTGGGGTGGATCGTGGGAC...... 21 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................GTGGCGAAAGCGCGCCCGTGGGGTG................. 25 0 20 0.05 1 0 1 0 0 0 0
....................................CTGTAAGGGAGTTCTCAGGCCGAGGTA............................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGGTGGTA.............. 24 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGATC............. 28 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................GCGCCCGTGGGGTGGATCGTG.......... 21 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................GCCCGTGGGGTGGATCGTGGGAC...... 23 0 20 0.05 1 0 1 0 0 0 0
..................................................TCAGGCCGAGGTACAGCTTCTCA................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGTGG............................................................................................... 22 1 20 0.05 1 0 0 0 1 0 0
..................................................................................TGTTGTGTTAGGACCTAAGG...................................................... 20 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................GCTCGTGGCGAAAGCGCGCC.......................... 20 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGAAA............. 28 2 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................GGATCGTGGGACGGTCGG 18 0 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTTGCGTGAGGACCTAAGGGG.................................................... 22 1 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTTGTGTGAGTACCTAAG....................................................... 19 1 20 0.05 1 0 0 1 0 0 0
.....................................TGTAAGGAAGTTCTCAGGCCGAGA............................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAATCGCGCCCGTGGG.................... 21 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGATGG................ 25 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................AGCCCGTGGGGTGGATCGTGGGA....... 23 1 20 0.05 1 0 1 0 0 0 0
..................................................................................TGTTGTGTGGGGACCTAAGGGA.................................................... 22 2 20 0.05 1 0 0 0 0 1 0
.....................................TGTAAGGAAGTTCTCAGGCCGAGGTAC............................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.................................................................................TTGTTGCGTGAGGACCTAAGGGGA................................................... 24 1 20 0.05 1 0 1 0 0 0 0
..................................................................................TGTTGTGTGAGGATCTAAGG...................................................... 20 1 20 0.05 1 0 0 1 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGAT.............. 27 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................GCAGCTCGTGGCGAAAGCGCG............................ 21 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................GTGGGGTGGATCGTGGGACGGTCGG 25 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGGGGT.................. 22 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGGT.................. 20 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................GCGCCCGTGGGGTGGATCGTGGG........ 23 0 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTTGTGTGAGGACCTAAGGGGG................................................... 23 1 20 0.05 1 1 0 0 0 0 0
................................................................................TTTGTTGTGTGAGGACCTAAGGGG.................................................... 24 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................GAAAGCGCGCCCGTGGGGTGGATC............. 24 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAACCGCGCCCGTGGGGTG................. 24 1 20 0.05 1 1 0 0 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGAGGTAC............................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................CGCTCGTGGCGAAAGCGCGCCCGTGGT.................... 27 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................GCGAAAGCGCGCCCGTGGA.................... 19 1 20 0.05 1 1 0 0 0 0 0
................................................................................TTTGTTGTGTGAGGACCTAAGG...................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.........................................AGGAAGTTCTCAGGCCGAGGTACAGC......................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................................TAAGGAAGTTCTCAGGCCGAGGTC............................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
....................................................................................TTTTGTGTGGACCTAAGG...................................................... 18 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTCC................ 25 2 20 0.05 1 0 1 0 0 0 0
......................................................................................................................CGAAAGCGCGCCCGTGGGGTGGATCG............ 26 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................AAGCGCGCCCGTGGGGTGGATCG............ 23 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................GGCGAAAGCGCGCCCGTGA..................... 19 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TGGCGAAAGCGCGCCCGTGGGTA.................. 23 2 20 0.05 1 1 0 0 0 0 0
...........................................GAAGTTCTCAGGCCGAGGTACA........................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
..................................................................................CGTTGTGTGAGGACCTAGGGGAA................................................... 23 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CTGATTTTGTTGGTCCCTGTTTGTTTCTTAATTGGTGACATTCCTTCAAGAGTCCGGCTCCATGTCGAAGAGTCAGTTTTAAACAACACACTCCTGGATTCCCCTATCGGCGAGCACCGCTTTCGCGCGGGCACCCCACCTAGCACCCTGCCAGCC
*************************************.......((..(((((((((((....((((((................))))))...)).)))..))))))..)).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V042
embryo
.................................................................CGAAGAGTCAGTTTTAAACAACACACT................................................................ 27 0 1 2.00 2 2 0 0 0
.................................................GAGTCCGGCTCCATGTCGAAGAGT................................................................................... 24 0 20 1.10 22 22 0 0 0
................................TGGTGACATTCCTTCAAGAGTCCGGC.................................................................................................. 26 0 1 1.00 1 1 0 0 0
...................................................................AAGAGTCAGTTTTAAACAACACAC................................................................. 24 0 1 1.00 1 1 0 0 0
.........................................................................................................ATCGGCGAGCACCGCTTTCG............................... 20 0 1 1.00 1 1 0 0 0
....................................................TCCGGCTCCATGTCGAAGAGT................................................................................... 21 0 20 0.95 19 0 19 0 0
..................................................AGTCCGGCTCCATGTCGAAGA..................................................................................... 21 0 20 0.15 3 3 0 0 0
...................................................GTCCGGCTCCATGTCGAAGAG.................................................................................... 21 0 20 0.10 2 2 0 0 0
...............................TAGGTCACCTTCCTTCAAGAGT....................................................................................................... 22 3 11 0.09 1 0 0 0 1
.....................................................CCGGCTCCATGTCGAAGAGG................................................................................... 20 1 20 0.05 1 1 0 0 0
.....................................................................................................................AGCTTTCGCGCGGGCACCCC................... 20 1 20 0.05 1 1 0 0 0
...................................................GTCCGGCTCCATGTCGAAG...................................................................................... 19 0 20 0.05 1 1 0 0 0
...............................................................................................................................CGGGCACCCCACCTAGCACCC........ 21 0 20 0.05 1 1 0 0 0
.................................................GATTCCGGCTCCATGGCGAAGAGT................................................................................... 24 2 20 0.05 1 1 0 0 0
..................................................................................................................CACCGCTTTCGCGCGGGCACCCCACCT............... 27 0 20 0.05 1 1 0 0 0
.............................................TAAAGAGTCCGGCTCCATGTCGAAGAGT................................................................................... 28 1 20 0.05 1 0 0 1 0
...........................................................................................................................CGCGCGGGCACCCCACCTAGCACCCT....... 26 0 20 0.05 1 1 0 0 0
..............................................................................................................CGAGCACCGCTTTCGCGCGGGCACCCC................... 27 0 20 0.05 1 1 0 0 0
.............................................................................................................................TGCGGGCACCCCACCTAGCACC......... 22 1 20 0.05 1 1 0 0 0
...........................................................................................................................CGCGCGGGCACCCCACCTAGCACCC........ 25 0 20 0.05 1 0 0 1 0
......................................................................................................................GCTTTCGCGCGGGCACCCCAGCTAGCACC......... 29 1 20 0.05 1 1 0 0 0
...........................................................................................................................AGCGCGGGCACCCCACCTAGCACC......... 24 1 20 0.05 1 1 0 0 0
.......................................................................................................................CTTTCGCGCGGGCACCCCACCTA.............. 23 0 20 0.05 1 1 0 0 0
..............................................CAAGAGTCCGGCTCCATGTCGAAGAGT................................................................................... 27 0 20 0.05 1 0 0 1 0
..................................................................................................................................GCACCCCACCTAGCACCC........ 18 0 20 0.05 1 1 0 0 0
...................................................................................................................ACCGCTTTCGCGCGGGCACCCCACCT............... 26 0 20 0.05 1 1 0 0 0
..............................................................................................................................GCGGGCACCCCACCTATCC........... 19 2 20 0.05 1 1 0 0 0
..........................................................................................................................TCGCGCGGGCACCCCACCT............... 19 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_3856:1355-1510 + dpe_215 GACTAAAAC---AACCAGGGACAAACA---AAGAATTAACCA----C-TGTAAGGAAGTTCTCAGGCCGAGGTACAGCTTCTCAGTCA---------------------------AAATTTGTTGTGTGAGGACCTAAGGGGATAGCCGCTCGTGGCGAAAGCGCGCCCGTGGGGTGGATCGTGGGACGGTCGG
dp5 Unknown_group_138:11988-12168 + GATCAATATAAAAA-----GATATACA---AATA----CCTAAGCTC-TGTAGGGAAGTTCTCAGGCCGAGGCACAGCTTCTCAGTCTGTCCAGGGCCGGCCCTTCCCCACAGCAAAATTTTTTGTGTGAGGACCTAAGGGGAGAGCCGTTCGTGGCGAAACCGCGCCCGTGGGGTGGATCGTGGGACGGTCGG
droWil2 scf2_1100000004947:678265-678306 - AACAGCTAGAACTACCGGTCCCAAACAACAGAGAATTAATCA--------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_1121:4417-4455 + GAAAACTACAATAACCAGGGACAGGCA---AACAAACGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000394718:44897-44925 + GGTAGAAAT---AATCAGGGACAGACG---ATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302459:5042-5081 + AGCAAACACAAT---CAATGTCGATCA---GACAAATCCCCA----T-TGT-----------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000488055:56557-56626 + GAAAAAAAATAAAA-----AAAA----------AATTTATAA----CTTGTAAGGATGCTCTCTGGCCGGGGTACAG-ATCTCAGTCAGA--------------------------------------------------------------------------------------------------------
droRho1 scf7180000762966:44147-44184 + AACGCTTACAATAACCAGGGACTGACA---AGTAAAAGACC---------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414550:8092-8131 + ATT----------------------------------------------GTAAGGATGCTCTCTGGCCGAGGTACAA-TTCTCAGTC-----------------------------------------------------------------------------------------------------------
droEug1 scf7180000408801:381-418 + AACCCTTACAGTAACCATGGACCAGCA---CATAAAAGACC---------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:23703951-23703977 + GACTAAAAC---AACAAAG--------------AATCAACCA----T-T-------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GACTAAAAC---AACCAGGGACAAACA---AAGAATTAACCA----C-TGTAAGGAAGTTCTCAGGCCGAGGTACAGCTTCTCAGTCA---------------------------AAATTTGTTGTGTGAGGACCTAAGGGGATAGCCGCTCGTGGCGAAAGCGCGCCCGTGGGGTGGATCGTGGGACGGTCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................TGTTGTGTGAGGACCTAAGGGG....................................................222019.70394034747000
........................................................................................................................TGTTGTGTGAGGACCTAAGGGGAT..................................................24114.0014334004
........................................................................................................................TGTTGTGTGAGGACCTAAGG......................................................20205.5511101074000
........................................................................................................................TGTTGTGTGAGGACCTAAGGGGATC.................................................2512.002000002
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTG.................24201.85370350002
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGG...................22201.20240240000
.......................................................................................................................TTGTTGTGTGAGGACCTAAGGGGAT..................................................2511.001001000
..........................................................................CAGCTTCTCAGTCA---------------------------AAATTTGT.......................................................................2211.001010000
........................................................................................................................TGTTGTGTGAGGACCTAAGGGGATCC................................................2611.001000001
................................................TGTAAGGAAGTTCTCAGGCCGAGG..........................................................................................................................24200.80160160000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGT..................23200.70140120002
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGGGGTGG................24200.60120100002
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGA...............26200.5511071003
........................................................................................................................TGTTGTGTGAGGACCTAAGGGGT...................................................23200.55110110000
...................................................................................................................................................CGCTCGTGGCGAAAGCGCGC...........................20200.5010073000
..................................................TAAGGAAGTTCTCAGGCCGAGG..........................................................................................................................22200.459090000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGG................25200.357000007
............................................................................................................................................................CGAAAGCGCGCCCGTGGGGTGG................22200.306040002
...................................................................................................................................................CGCTCGTGGCGAAAGCGCGCCC.........................22200.255050000
..............................................C-TGTAAGGAAGTTCTCAGGCCGAGG..........................................................................................................................25200.255050000
..................................................TAAGGAAGTTCTCAGGCCGAGGTA........................................................................................................................24200.255050000
...............................................................................................................................................................................TGGATCGTGGGACGGTCGG19200.255050000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGG.........20200.255050000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGT....................21200.204022000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGG.........23200.204040000
..................................................TAAGGAAGTTCTCAGGCCGAGGTACAG.....................................................................................................................27200.204040000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGGGACGG....25200.204040000
.......................................................................................................................TTGTTGTGTGAGGACCTAAGGGG....................................................23200.204040000
..................................................TAAGGAAGTTCTCAGGCCGAGGTACA......................................................................................................................26200.204040000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTG..........19200.153030000
.................................................GTAAGGAAGTTCTCAGGCCG.............................................................................................................................20200.153030000
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGGG....................20200.153030000
....................................................................................................................................................GCTCGTGGCGAAAGCGCGCCCGTG......................24200.153012000
........................................................................................................................TGTTGTGTGAGGACCTAAGT......................................................20200.153000003
...................................................................................................................................................CGCTCGTGGCGAAAGCGCG............................19200.153030000
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGGGGTGGA...............25200.153030000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTA.................24200.153012000
....................................................................................................................................................................CGCCCGTGGGGTGGATCGTG..........20200.153030000
...................................................................................................................................................CGCTCGTGGCGAAAGCGCGCCCGTGG.....................26200.153030000
...............................................................................................................................................................................TGGATCGTGGGACGGTCG.18200.153030000
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGGGG...................21200.153030000
......................................................................................................................TTTGTTGTGTGAGGACCTAAGGGGA...................................................25200.102010001
......................................................................................................................................................................CCCGTGGGGTGGATCGTGGG........20200.102020000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGT...21200.102010001
.......................................................................................................................TTGTTGTGTGAGGACCTAAGGGGT...................................................24200.102000002
................................................TGTAAGGAAGTTCTCAGGC...............................................................................................................................19200.102020000
......................................................................................................................................................TCGTGGCGAAAGCGCGCCCGTGGG....................24200.102020000
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGGGGTGGATC.............27200.102010001
......................................................................................CA---------------------------AAATTTGTTGTGTGAGGACCTAAGG......................................................27200.102020000
.......................................................................................A---------------------------AAATTTGTTGTGTGAGGACCTAAGG......................................................26200.102020000
............................................................................................................................................................CGAAAGCGCGCCCGTGGGGTG.................21200.102020000
.......................................................................................................................................................CGTGGCGAAAGCGCGCCCGTGGGG...................24200.102020000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGA....................21200.102011000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGTC..22200.102010100
................................................TGTAAGGAAGTTCTCAGGCCGAG...........................................................................................................................23200.102020000
......................................................................................................................................................TCGTGGCGAAAGCGCGCCCGTGG.....................23200.102020000
............................................................................................................................................................CGAAAGCGCGCCCGTGGGG...................19200.102002000
........................................................................................................................................................GTGGCGAAAGCGCGCCCGTGGGGTGGA...............27200.102010001
.........................................A----C-TGTAAGGAAGTTCTCAGGCCGAGG..........................................................................................................................26110.091010000
.........................................A----C-TGTAAGGAAGTTCTCAGGCCGAGGT.........................................................................................................................27110.091010000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGA.........20200.051010000
.......................................................................................................................................................................CCGTGGGGTGGATCGTGG.........18200.051010000
.................................................................................................................................................GCCGCTCGTGGCGAAAGCGCGCCCG........................25200.051010000
....................................................................................................................................................GCTCGTGGCGAAAGCGCGCCCGTGG.....................25200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGAA..............27200.051010000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGGGACG.....24200.051010000
............................................................................................................................................................CGAAAGCGCGCCCGTGGGGTGGA...............23200.051010000
................................................TGTAAGGAAGTTCTCAGGCCGAGGT.........................................................................................................................25200.051010000
...................................................AAGGAAGTTCTCAGGCCGAGGTACC......................................................................................................................25200.051010000
.......................................................................................................................TTGTTGTGTGAGGACCTAAGGG.....................................................22200.051010000
.....................................................................................................................................................CTCGTGGCGAAAGCGCGCCA.........................20200.051010000
.............................................................................................................................................................GAAAGCGCGCCCGTGGGGTGGATCG............25200.051000001
......................................................................................................................TTTGTTGTGTGAGGACCTAAGGG.....................................................23200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGC................25200.051010000
...................................................................................................................................................CGCTCGTGGCGAAAGCGCGCCA.........................22200.051001000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGT...........21200.051010000
.......................................................AAGTTCTCAGGCCGAGGTACAG.....................................................................................................................22200.051010000
.........................................................................................................................................................................GTGGGGTGGATCGTGGGACGGTCG.24200.051010000
........................................................................................................................................................................CGTGGGGTGGATCGTGGGACGGTC..24200.051010000
................................................TGTAAGGAAGTTCTCAGGCCGTA...........................................................................................................................23200.051010000
........................................................................................................................................................GTGGCGAAAGCGCGCCCGTGGGT...................23200.051001000
........................................................................................................................................................GTGGCGAAAGCGCGCCCGTGGGGTGG................26200.051010000
.............................................................................................................................................................GAAAGCGCGCCCGTGGGGTGGATCC............25200.051000001
............................................................................................................................GTGTGAGGACCTAAGGGGA...................................................19200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGA................25200.051001000
....................................................................................................................AATTTGTTGTGTGAGGACCTAAGGG.....................................................25200.051010000
........................................................................................................................TGTTGTGTGAGGACCTAAGA......................................................20200.051010000
.........................................................................................................................GTTGTGTGAGGACCTAAGG......................................................19200.051000001
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGATT.............28200.051000001
.................................................................................................................................................GCCGCTCGTGGCGAAAGCGCG............................21200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGG....................21200.051000001
...................................................................................................................................................CGCTCGTGGCGAAAGCGCGCCCGTGA.....................26200.051010000
........................................................................................................................TGTTGTGTGAGGACCTAA........................................................18200.051010000
....................................................................................................................................................GCTCGTGGCGAAAGCGCGCCA.........................21200.051001000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGG....20200.051000010
.......................................................................................................................................................................CCGTGGGGTGGATCGTGGGAC......21200.051010000
........................................................................................................................................................GTGGCGAAAGCGCGCCCGTGGGGTG.................25200.051000001
............................................................................................................................................................CGAAAGCGCGCCCGTGGGGTGGTA..............24200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGATC.............28200.051000001
...................................................................................................................................................................GCGCCCGTGGGGTGGATCGTG..........21200.051010000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGGGAC......23200.051000001
.............................................................TCAGGCCGAGGTACAGCTTCTCA..............................................................................................................23200.051010000
....................................................................................................................................................GCTCGTGGCGAAAGCGCGCC..........................20200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGAAA.............28200.051010000
................................................................................................................................................................................GGATCGTGGGACGGTCGG18200.051010000
................................................TGTAAGGAAGTTCTCAGGCCGAGA..........................................................................................................................24200.051010000
................................................TGTAAGGAAGTTCTCAGGCCGAGGTAC.......................................................................................................................27200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTGGAT..............27200.051000001
.........................................................................................................................................................................GTGGGGTGGATCGTGGGACGGTCGG25200.051000001
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGGGGT..................22200.051000001
............................................................................................................................................................CGAAAGCGCGCCCGTGGGGT..................20200.051000001
...................................................................................................................................................................GCGCCCGTGGGGTGGATCGTGGG........23200.051010000
........................................................................................................................TGTTGTGTGAGGACCTAAGGGGG...................................................23200.051010000
......................................................................................................................TTTGTTGTGTGAGGACCTAAGGGG....................................................24200.051001000
.............................................................................................................................................................GAAAGCGCGCCCGTGGGGTGGATC.............24200.051010000
..................................................TAAGGAAGTTCTCAGGCCGAGGTAC.......................................................................................................................25200.051010000
...................................................................................................................................................CGCTCGTGGCGAAAGCGCGCCCGTGGT....................27200.051010000
...........................................................................................................................................................GCGAAAGCGCGCCCGTGGA....................19200.051010000
......................................................................................................................TTTGTTGTGTGAGGACCTAAGG......................................................22200.051010000
....................................................AGGAAGTTCTCAGGCCGAGGTACAGC....................................................................................................................26200.051010000
..................................................TAAGGAAGTTCTCAGGCCGAGGTC........................................................................................................................24200.051000001
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGGTCC................25200.051000001
............................................................................................................................................................CGAAAGCGCGCCCGTGGGGTGGATCG............26200.051010000
...............................................................................................................................................................AAGCGCGCCCGTGGGGTGGATCG............23200.051010000
..........................................................................................................................................................GGCGAAAGCGCGCCCGTGA.....................19200.051010000
.........................................................................................................................................................TGGCGAAAGCGCGCCCGTGGGTA..................23200.051010000
......................................................GAAGTTCTCAGGCCGAGGTACA......................................................................................................................22200.051010000
dp5
GATCAATATAAAAA-----GATATACA---AATA----CCTAAGCTC-TGTAGGGAAGTTCTCAGGCCGAGGCACAGCTTCTCAGTCTGTCCAGGGCCGGCCCTTCCCCACAGCAAAATTTTTTGTGTGAGGACCTAAGGGGAGAGCCGTTCGTGGCGAAACCGCGCCCGTGGGGTGGATCGTGGGACGGTCGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................TTTTGTGTGAGGACCTAAGGGGAGA.................................................2518.0080620000000
........................................................................................................................TTTTGTGTGAGGACCTAAGGGGAG..................................................2418.0080700000100
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTGG......................................25128.009608600004420
........................................................................................................................TTTTGTGTGAGGACCTAAGGGGA...................................................2317.0070600000100
........................................................................................................................TTTTGTGTGAGGACCTAAGGGG....................................................2216.0060300000300
........................................................................................................................TTTTGTGTGAGGACCTAAGGGGAGAGC...............................................2715.0050000000500
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGT...21204.659300000007860
..........................................................................CAGCTTCTCAGTCTGTCCAGGG..................................................................................................22204.308608100000500
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTG.......................................24124.004804310010300
...................................................................................................................................GACCTAAGGGGAGAGCCGTTC..........................................21203.507006500203000
........................................................................................................................TTTTGTGTGAGGACCTAAGG......................................................2013.0030300000000
........................................................................................................................TTTTGTGTGAGGACCTAAGGGGAGAG................................................2613.0030300000000
....................................................................................................................AATTTTTTGTGTGAGGACCTAAGG......................................................2413.0030000000300
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGG.........23202.404804100002410
...........................................................................................................................................................................GGGGTGGATCGTGGGACGGT...20202.104201000011354
.........................................................................................................................TTTGTGTGAGGACCTAAGGGGAGAGC...............................................2612.0020110000000
.......................................................................................................................TTTTTGTGTGAGGACCTAAGGGGA...................................................2412.0020000000200
.....................................................................................TCTGTCCAGGGCCGGCCCTTCCC......................................................................................2312.0020200000000
.........................................................................................................................TTTGTGTGAGGACCTAAGGGGAGAG................................................2512.0020200000000
.........................................................................................................................TTTGTGTGAGGACCTAAGGGGA...................................................2212.0020200000000
.........................................................................................................................TTTGTGTGAGGACCTAAGGGGAG..................................................2312.0020110000000
......................................................................................................................TTTTTTGTGTGAGGACCTAAGGG.....................................................2312.0020200000000
.........................................................................................................................TTTGTGTGAGGACCTAAGGGG....................................................2112.0020000000200
..........................................................................CAGCTTCTCAGTCTGTCCAGG...................................................................................................21201.853703610000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGT........................................23121.672001810001000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGTC..22201.452900000045146
...............................................................................TCTCAGTCTGTCCAGGGC.................................................................................................18201.152302210000000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTG..........22201.052102100000000
........................................................................CACAGCTTCTCAGTCTGTCCAGGGC.................................................................................................2511.0010100000000
................................................TGTAGGGAAGTTCTCAGGCCGA............................................................................................................................2211.0010100000000
.................................................GTAGGGAAGTTCTCAGGCCGAGG..........................................................................................................................2311.0010100000000
.........................................................................................................................TTTGTGTGAGGACCTAAGGG.....................................................2011.0010000000100
....................................................................................................................AATTTTTTGTGTGAGGACCTAAGGG.....................................................2511.0010100000000
.........................................................................................................................TTTGTGTGAGGACCTAAGGGGAGA.................................................2411.0010100000000
........................................................................................................................TTTTGTGTGAGGACCTAAGGGGAGC.................................................2511.0010010000000
.....................................................................................TCTGTCCAGGGCCGGCCCTTCC.......................................................................................2211.0010100000000
............................................................................................................................................................CGAAACCGCGCCCGTGGGA...................1911.0010100000000
...............................................................................TCTCAGTCTGTCCAGGGCCG...............................................................................................2011.0010100000000
........................................................................................................................TTTTGTGTGAGGACCTAAGGG.....................................................2111.0010100000000
.............................................................................................................................................................GAAACCGCGCCCGTGGGGTGGAT..............2311.0010100000000
........................................................................................................................TTTTGTGTGAGGACCTAAG.......................................................1911.0010100000000
......................................................................................................................TTTTTTGTGTGAGGACCTAAGGGG....................................................2411.0010100000000
..................................................TAGGGAAGTTCTCAGGCCGAGGCACA......................................................................................................................2611.0010100000000
.......................................................................................................................TTTTTGTGTGAGGACCTAAGGGGAG..................................................2511.0010100000000
..........................................................................CAGCTTCTCAGTCTGTCCAGGGCCGG..............................................................................................2611.0010100000000
..................................................TAGGGAAGTTCTCAGGCCGAGGC.........................................................................................................................2311.0010100000000
........................................................................................................................TTTTGTGTGAGGACCTAAGGT.....................................................2111.0010100000000
.......................................................................................................................TTTTTGTGTGAGGACCTAAGGG.....................................................2211.0010100000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTT...........................................20200.901801800000000
..............................................................................................................................................................................GTGGATCGTGGGACGGTCGG20200.851701600100000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGGGACGG....28200.701400000001400
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGTCG.23200.70140300001901
..........................................................................CAGCTTCTCAGTCTGTCCAGGGC.................................................................................................23200.651300001111000
...........................................................................AGCTTCTCAGTCTGTCCAGGG..................................................................................................21200.551101100000000
..............................................................................TTCTCAGTCTGTCCAGGGC.................................................................................................19200.551101100000000
...................................................................................................................................GACCTAAGGGGAGAGCCGT............................................19200.551101100000000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGG....20200.55110100000730
....................................................................................................................................................................CGCCCGTGGGGTGGATCGTGG.........21200.50100900001000
......................................................................................................................................................................CCCGTGGGGTGGATCGTGGGACGG....24200.4590200000700
...........................................................................................................................TGTGTGAGGACCTAAGGGGAGAGC...............................................24200.4590900000000
...........................................................................................................................TGTGTGAGGACCTAAGGGGAGAG................................................23200.4590900000000
....................................................................................................................................ACCTAAGGGGAGAGCCGTTC..........................................20200.4080800000000
...........................................................................................................................................................................GGGGTGGATCGTGGGACGGTC..21200.4080000010160
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGTA..22200.3570000010060
..............................................................................................................................................................................GTGGATCGTGGGACGGTCG.19200.3060500100000
....................................................................................................................................................................CGCCCGTGGGGTGGATCGTGGG........22200.3060600000000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGTCGG24200.3060300000120
..........................................................................................................................................................................TGGGGTGGATCGTGGGACGGTT..22200.3060100001400
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTGGCGA...................................28110.2730300000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTGGC.....................................26110.2730300000000
..........................................................................................................................TTGTGTGAGGACCTAAGGGGA...................................................21200.2550500000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTGT......................................25120.2530300000000
..........................................................................CAGCTTCTCAGTCTGTCCAG....................................................................................................20200.2550500000000
..........................................................................................................................TTGTGTGAGGACCTAAGGGGAG..................................................22200.2550500000000
..............................................................................TTCTCAGTCTGTCCAGGGCC................................................................................................20200.2040020000020
...................................................................................................................................................................GCGCCCGTGGGGTGGATCGTGGG........23200.2040300000100
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGGGACG.....27200.2040400000000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCG............20200.2040400000000
.......................................................................................................................................TAAGGGGAGAGCCGTTCGTGGC.....................................22110.1820000000200
....................................................................................................................................ACCTAAGGGGAGAGCCGTTCGTG.......................................23120.1720200000000
.............................................................................................................................TGTGAGGACCTAAGGGGAGAGCC..............................................23200.1530200001000
...............................................................................................................................TGAGGACCTAAGGGGAGAG................................................19200.1530300000000
.........................................................................................................................................................................GTGGGGTGGATCGTGGGAC......19200.1530100000200
...................................................................................................................................................................GCGCCCGTGGGGTGGATCGTGG.........22200.1530300000000
............................................................................................................................GTGTGAGGACCTAAGGGGA...................................................19200.1530300000000
..........................................................................................................................TTGTGTGAGGACCTAAGGGGAGA.................................................23200.1530300000000
.........................................................................................................................................................................GTGGGGTGGATCGTGGGACGGT...22200.1530000000030
..............................................................................................................................................................................GTGGATCGTGGGACGGTC..18200.1530300000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCG.........................................22200.1530010001100
..........................................................................................................................TTGTGTGAGGACCTAAGGG.....................................................19200.1020000101000
...................................................................................................................................GACCTAAGGGGAGAGCCAA............................................19200.1020200000000
..........................................................................CAGCTTCTCAGTCTGTCCA.....................................................................................................19200.1020200000000
............................................................................................................................GTGTGAGGACCTAAGGGGAGA.................................................21200.1020200000000
...................................................................................................................................................................GCGCCCGTGGGGTGGATCGTGGGACGG....27200.1020000000200
...........................................................................................................................................................................GGGGTGGATCGTGGGACGGTCGG23200.1020010010000
...................................................................................................................................GACCTAAGGGGAGAGC...............................................16200.1020000000200
..........................................................................................................................TTGTGTGAGGACCTAAGGGGAGAGC...............................................25200.1020200000000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGGGACG.....24200.1020200000000
.............................................................................CTTCTCAGTCTGTCCAGGG..................................................................................................19200.1020200000000
...........................................................................................................................................................................GGGGTGGATCGTGGGAC......17200.1020000000002
..........................................................................................................................TTGTGTGAGGACCTAAGGGG....................................................20200.1020200000000
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGG.........20200.1020200000000
............................................................................GCTTCTCAGTCTGTCCAGGGC.................................................................................................21200.1020000200000
..........................................................................................................................................................................TGGGGTGGATCGTGGGACG.....19200.1020000000200
.............................................................................................................................TGTGAGGACCTAAGGGGAGAGC...............................................22200.1020000000020
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGGGACGGT...26200.1020000000200
......................................................................................................................................................................CCCGTGGGGTGGATCGTGGGACGGTA..26200.1020000000200
...........................................................................................................................TGTGTGAGGACCTAAGGGGA...................................................20200.1020000200000
.....................................................GGAAGTTCTCAGGCCGAGG..........................................................................................................................19200.1020200000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCA.........................................22200.1020200000000
.....................................................................................................................................CCTAAGGGGAGAGCCGTTCGTGGCGAAA.................................28110.0910100000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTGGCG....................................27110.0910100000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTCGTGGCGAA..................................29110.0910000001000
....................................................................................................................................ACCTAAGGGGAGAGCCGTTCGTGG......................................24120.0810100000000
....................................................................................................................................ACCTAAGGGGAGAGCCGTTCGT........................................22120.0810100000000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGA...........21200.0510100000000
........................................................................................................................................................................CGTGGGGTGGATCGTGGGAC......20200.0510100000000
.............................................................................................................................TGTGAGGACCTAAGGGGAGAA................................................21200.0510000100000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGT.........23200.0510000000010
................................................................................................................................GAGGACCTAAGGGGAGAGCCG.............................................21200.0510100000000
........................................................................................................................................................................CGTGGGGTGGATCGTGGGA.......19200.0510100000000
...........................................................................................................................TGTGTGAGGACCTAAGGGGAA..................................................21200.0510100000000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGGGT.......25200.0510100000000
..........................................................................................................................................................................TGGGGTGGATCGTGGGAC......18200.0510000000100
...........................................................................................................................................................................GGGGTGGATCGTGGGACGGTT..21200.0510000001000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTAA.........................................22200.0510100000000
........................................................................................................................................................................CGTGGGGTGGATCGTGGGACGGTC..24200.0510000000100
..........................................................................................................................................................................TGGGGTGGATCGTGGG........16200.0510000000100
........................................................................................................................................................................CGTGGGGTGGATCGTGGGACG.....21200.0510100000000
....................................................................................................................................................................CGCCCGTGGGGTGGATCGTG..........20200.0510100000000
.............................................................................................................................TGTGAGGACCTAAGGGGAGAGCA..............................................23200.0510100000000
..............................................................................................................................................................................GTGGATCGTGGGACGGTTT.19200.0510100000000
...............................................................................................................................TGAGGACCTAAGGGGAGAGC...............................................20200.0510001000000
..........................................................................................................................................................................TGGGGTGGATCGTGGGA.......17200.0510000000010
...........................................................................................................................TGTGTGAGGACCTAAGGGGAGAGA...............................................24200.0510010000000
..............................................................................TTCTCAGTCTGTCCAGGGT.................................................................................................19200.0510000001000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTGGGA.......25200.0510100000000
....................................................................................................................................ACCTAAGGGGAGAGCCGTT...........................................19200.0510100000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTTT..........................................21200.0510000100000
.............................................................................................................................TGTGAGGACCTAAGGGGAC..................................................19200.0510100000000
....................................................................................................................................ACCTAAGGGGAGAGCCGT............................................18200.0510100000000
....................................................................................................................................................................CGCCCGTGGGGTGGATCGTGGGACG.....25200.0510100000000
......................................................................................................................................................................CCCGTGGGGTGGATCGTGGGACGGTC..26200.0510100000000
...................................................................................................................................GACCTAAGGGGAGAGCCGTA...........................................20200.0510100000000
.............................................................................CTTCTCAGTCTGTCCAGGGCC................................................................................................21200.0510100000000
...........................................................................................................................TGTGTGAGGACCTAAGGGGAGAGCC..............................................25200.0510100000000
..............................................................................................................................GTGAGGACCTAAGGGGAG..................................................18200.0510100000000
..........................................................................CAGCTTCTCAGTCTGTCCAGGGCT................................................................................................24200.0510100000000
..............................................................................TTCTCAGTCTGTCCAGGGA.................................................................................................19200.0510100000000
............................................................................GCTTCTCAGTCTGTCCAGGGCC................................................................................................22200.0510010000000
..................................................................................................................................................................CGCGCCCGTGGGGTGGATCGTCCC........24200.0510100000000
................................................................................................................................GAGGACCTAAGGGGAGAGC...............................................19200.0510000000010
.....................................................................................................................................................................GCCCGTGGGGTGGATCGTGGGACGG....25200.0510000000010
.............................................................................................................................TGTGAGGACCTAAGGGGAGAGCCG.............................................24200.0510100000000
.............................................................................................................................TGTGAGGACCTAAGGGGAGAGCCA.............................................24200.0510100000000
...............................................................................................................................TGAGGACCTAAGGGGAGAGCCG.............................................22200.0510000000100
................................................................................CTCAGTCTGTCCAGGGTA................................................................................................18200.0510100000000
.............................................................................CTTCTCAGTCTGTCCAGGGC.................................................................................................20200.0510000001000
..............................................................................................................................................................................GTGGATCGTGGGACGGTTA.19200.0510000001000
......................................................................................................................................................................CCCGTGGGGTGGATCGTGGGACGC....24200.0510000000100
...........................................................................................................................................................................GGGGTGGATCGTGGGACGGTTTC23200.0510000000010
.............................................................................................................................TGTGAGGACCTAAGGGGAGAGCT..............................................23200.0510000001000
...........................................................................AGCTTCTCAGTCTGTCCAG....................................................................................................19200.0510100000000
.............................................................................................................................................................................GGTGGATCGTGGGACGGTC..19200.0510000001000
.......................................................................................................................................................................CCGTGGGGTGGATCGTGGGACGA....23200.0510000000100
...................................................................................................................................GACCTAAGGGGAGAGCCCAA...........................................20200.0510100000000
..........................................................................CAGCTTCTCAGTCTGTCCAGGGCC................................................................................................24200.0510000100000
.....................................................................................................................................CCTAAGGGGAGAGCCGTTCG.........................................20200.0510100000000
droWil2
AACAGCTAGAACTACCGGTCCCAAACAACAGAGAATTAATCA--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
GAAAACTACAATAACCAGGGACAGGCA---AACAAACGACCA--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.AAAACTACAATAACCAGGGACAGG.........................................................................................................................................................................24201.05211900011
.....CTACAATAACCAGGGACAGGC........................................................................................................................................................................21200.7515804102
.AAAACTACAATAACCAGGGACAGGC........................................................................................................................................................................25200.5511800030
...AACTACAATAACCAGGGACAGGC........................................................................................................................................................................23200.459800010
.AAAACTACAATAACCAGGGACAGGCA---....................................................................................................................................................................26200.408700001
.AAAACTACAATAACCAGGGACAG..........................................................................................................................................................................23200.306600000
...............CAGGGACAGGCA---AACAAACGA...........................................................................................................................................................21200.255300002
..AAACTACAATAACCAGGGACA...........................................................................................................................................................................21200.204400000
......TACAATAACCAGGGACAGGCA---....................................................................................................................................................................21200.153100002
..........ATAACCAGGGACAGGCA---AACA................................................................................................................................................................21200.102200000
...AACTACAATAACCAGGGACAGG.........................................................................................................................................................................22200.102200000
...AACTACAATAACCAGGGACAG..........................................................................................................................................................................21200.102101000
...........TAACCAGGGACAGGCA---AACA................................................................................................................................................................20200.102001001
............AACCAGGGACAGGCA---AACAAA..............................................................................................................................................................21200.102100001
...AACTACAATAACCAGGGACAGGCA---....................................................................................................................................................................24200.102200000
.......ACAATAACCAGGGACAGGCA---A...................................................................................................................................................................21200.102100001
.....CTACAATAACCAGGGACAGGCT---....................................................................................................................................................................22200.051000100
...AACTACAATAACCAGGGACAGGCA---AAC.................................................................................................................................................................27200.051001000
.......ACAATAACCAGGGACAGGCA---AACAA...............................................................................................................................................................25200.051001000
..........ATAACCAGGGACAGGCA---AACAAACGACC.........................................................................................................................................................28200.051100000
......TACAATAACCAGGGACAGGC........................................................................................................................................................................20200.051100000
..........ATAACCAGGGACAGGCA---AACAAACGA...........................................................................................................................................................26200.051100000
...AACTACAATAACCAGGGACAGGCA---A...................................................................................................................................................................25200.051100000
.....CTACAATAACCAGGGACAGGCA---AACA................................................................................................................................................................26200.051100000
.......ACAATAACCAGGGACAGGCA---AA..................................................................................................................................................................22200.051100000
.....CTACAATAACCAGGGACAGG.........................................................................................................................................................................20200.051000001
.AAAACTACAATAACCAGGG..............................................................................................................................................................................19200.051100000
...AACTACAATAACCAGGGACAGGCA---AA..................................................................................................................................................................26200.051100000
GAAAACTACAATAACCAGGGACAGG.........................................................................................................................................................................25200.051100000
.AAAACTACAATAACCAGGGA.............................................................................................................................................................................20200.051100000
GAAAACTACAATAACCAGGGACAG..........................................................................................................................................................................24200.051100000
........CAATAACCAGGGACAGGCA---AAC.................................................................................................................................................................22200.051100000
..........ATAACCAGGGACAGGCA---AAC.................................................................................................................................................................20200.051000001
........CAATAACCAGGGACAGGCA---....................................................................................................................................................................19200.051100000
..AAACTACAATAACCAGGGA.............................................................................................................................................................................19200.051000100
.AAAACTACAATAACCAGGGACA...........................................................................................................................................................................22200.051100000
...........TAACCAGGGACAGGCA---AACAAACGAC..........................................................................................................................................................26200.051100000
................AGGGACAGGCA---AACAAACGA...........................................................................................................................................................20200.051100000
.......ACAATAACCAGGGACAGGCA---....................................................................................................................................................................20200.051100000
.AAAACTACAATAACCAGGGAC............................................................................................................................................................................21200.051100000
........CAATAACCAGGGACAGGCA---AA..................................................................................................................................................................21200.051000001
........CAATAACCAGGGACAGGCA---A...................................................................................................................................................................20200.051100000
GAAAACTACAATAACCAGGGACA...........................................................................................................................................................................23200.051100000
..AAACTACAATAACCAGGGACAGGCA---A...................................................................................................................................................................26200.051100000
droBip1
GGTAGAAAT---AATCAGGGACAGACG---ATAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCAAACACAAT---CAATGTCGATCA---GACAAATCCCCA----T-TGT-----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GAAAAAAAATAAAA-----AAAA----------AATTTATAA----CTTGTAAGGATGCTCTCTGGCCGGGGTACAG-ATCTCAGTCAGA--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACGCTTACAATAACCAGGGACTGACA---AGTAAAAGACC---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATT----------------------------------------------GTAAGGATGCTCTCTGGCCGAGGTACAA-TTCTCAGTC-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AACCCTTACAGTAACCATGGACCAGCA---CATAAAAGACC---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
GACTAAAAC---AACAAAG--------------AATCAACCA----T-T-------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/15/2015 at 02:53 PM