dpe_2138

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCGGGCATCGCTTGCGAGACCAACGGACGCTGCCTGAATGCACGGGAGGGTACCTATTTACCATCCGAGATTAGTTGCAATGGATATGTCATCTGCCAATGCGAGTGCGAGGTCGAGTTGACAGTGTCCCGATGGCTTGTACTGGGACCAGGACCTATTGACTGCAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ****************************************************************..((....(((.((..((((((((((.(((((..(((....))).)))..)).))))).))))).............)).)))......))********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M021 embryo	V042 embryo
......................AACGGACGCTGCCTGAATGCACGGGA...........................................................................................................................................................................................................	26	0	1	3.00	3	3	0
.....GCATCGCTTGCGAGACCAACGGACGCT...........................................................................................................................................................................................................................	27	0	1	3.00	3	3	0
..............GCGAGACCAACGGACGCTGCCT.......................................................................................................................................................................................................................	22	0	1	3.00	3	3	0
......................AACGGACGCTGCCTGAATGCACGGGAGG.........................................................................................................................................................................................................	28	0	1	2.00	2	2	0
...............CGAGACCAACGGACGCTGCC........................................................................................................................................................................................................................	20	0	1	1.00	1	1	0
......CATCGCTTGCGAGACCAACGGAC..............................................................................................................................................................................................................................	23	0	1	1.00	1	1	0
...........CTTGCGAGACCAACGGACGCTGCCTGG.....................................................................................................................................................................................................................	27	1	1	1.00	1	1	0
...................ACCAACGGACGCTGCCTGAATGCACGGGG...........................................................................................................................................................................................................	29	1	1	1.00	1	1	0
...............CGAGACCAACGGACACTGCC........................................................................................................................................................................................................................	20	1	1	1.00	1	1	0
..................................................................CGAGATTAGTTGCAATGGATATGT.................................................................................................................................................................	24	0	1	1.00	1	1	0
.............TGCGAGACCAACGGACGCTGCCTGAAT...................................................................................................................................................................................................................	27	0	1	1.00	1	1	0
.....................CAACGGACGCTGCCTGAATGCACGGGA...........................................................................................................................................................................................................	27	0	1	1.00	1	1	0
...........CTTGCGAGACCAACGGACGCT...........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0
.....................................................................................................GCGAGTGCGAGGTCGAGTTGACGT..............................................................................................................................	24	2	1	1.00	1	0	1
................................................................................................................................CCCGATGGCTTGTACTGGGACCAGGACCT..............................................................................................	29	0	2	0.50	1	1	0

GAGCCCGTAGCGAACGCTCTGGTTGCCTGCGACGGACTTACGTGCCCTCCCATGGATAAATGGTAGGCTCTAATCAACGTTACCTATACAGTAGACGGTTACGCTCACGCTCCAGCTCAACTGTCACAGGGCTACCGAACATGACCCTGGTCCTGGATAACTGACGTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ********************************************************************************************..((....(((.((..((((((((((.(((((..(((....))).)))..)).))))).))))).............)).)))......))****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V057 head	M042 female body	V042 embryo
.......TAGCGAACGCTCTCCTTG..................................................................................................................................................................................................................................	18	2	4	0.25	1	1	0	0
...........................................................................................................................TCACTGGTCTAACGAACAT.............................................................................................................	19	3	9	0.11	1	0	1	0
...................TGGTTACCTGCGACGGCAT.....................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1
............AACGCTCAGGATGCCTGA.............................................................................................................................................................................................................................	18	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droPer2	scaffold_9:229279-229529 +	dpe_2138	CTCGGGCATCGCTTGCGAGACCAACGGACGCTGCCTGAATGCACGGGAGGGTACCTATTTACCATCCGAGATTAGTTGCAATGGATATGTCATCTGCCAATGCGAGTGCGAGGTCGAGTTGACAGTGTCCCGATGGCTTGTACTGGGACCAGGACCTATTGAC-TGCAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
dp5	XR_group6:1933458-1933628 +		CTCGGGCATCGCTTGCGAGACCAACGGACGCTGCCTGAATGCACGGGAGGGTACCTATTTACCATCCGAGATTAGTTGCAATGGATATGTCATCTGCCAATGCGAGTGCGAGGTCGAGTTGA-CGTGTCCCGATGGCTTGTACTGGGACCAGGACCTATTGACTTGCAACTA--------------------------------------------------------------------------------
droWil2	scf2_1100000004762:5763178-5763348 -		ATCGGGCATTGCCTGTGAGAGTAACGGTCGCTGTTTGGGAAAACGCGAAGGAACCTACTTGCCGTCAGTTACCAGTTGCAATAAATATGTAGTCTGCCAATGTGAATGCGAGGTGGAAATGC-CCTGTGACGATAATCTCTACTGGGATCAAGACCTCATGACCTGCAACTA--------------------------------------------------------------------------------
droVir3	scaffold_13049:21097684-21097854 -		CTCCGGCATATCCTGTGAGAGCAACGGTCGATGTCTGGGACAACGCGAGGGCATACTGTTTCCATCCCTGACCAGTTGCAGTGGCTATGTGGTCTGCCAGTGCGAGTGCGAGGTTCCAATGG-AGTGCGGACAGGGCTTATACTGGGATCAAAAACTGTCCACTTGCAACTA--------------------------------------------------------------------------------
droMoj3	scaffold_6680:15468850-15468963 -		CTCGGGCATTTCCTGTGAAAGCAACGGCCGCTGCCTGGGACAGCGCGAAGGCACCTATTTCCCATCCCTGACCAGCTGCAGCGGCTACGTCGTCTGCCAGTGCGAGTGTGAGGT------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:22574575-22574745 +		CTCCGGCATCTCCTGTGAGAGCAACGGTCGCTGTTTGGGCCAACGCGAGGGCACCTTGTTCCCATCCCTGGTCAGTTGTAGCGAATATGTAGTCTGCCAGTGCGAGTGTGAAGTGGACATGA-CGTGCGGACAAGGCTTGTACTGGGATCAGAAGCTGCTGACTTGCAACTA--------------------------------------------------------------------------------
droAna3	scaffold_13337:6194322-6194492 +		TTCGGGCACCGCCTGCGAAAGCAATGGCCGCTGCTTGGGCAAGCCCGAGGGAATCTTCTTGCCCTCCACCACGAGCTGCAATGAATATGTCGTCTGTCAGTGCGAGTGCGAGGTGGAAATGT-CCTGTCCGGTAGGTCTTTACTGGGACCAAGATCAGAGAACTTGCAACTA--------------------------------------------------------------------------------
droBip1	scf7180000396419:135642-135792 +		CTCGGGCACCGCCTGCGAAAGCAACGGCAGGTGTTTGGGCCAGCTTGAGGGAACCTATTTGAAGTCCACCACAAGCTGCAATGGCTATGTCGTCTGCCAGTGCGAATGCGAGGTGGAAATGT-CCTGTCCTGTGGGCCTTTACTGGGACCAG----------------------------------------------------------------------------------------------------
droKik1	scf7180000302391:878014-878184 -		CTCTGGCACATCCTGTGAGAGTAACGGTCGTTGCTTGGGCAAAAAGGAGGGTACTTTCCTGCCTTCAGAGACAAACTGTGGACGGTATGTGGTTTGCCAGTGCGAGTGTGAAGTCGAGATGG-AGTGCTCAGATGGGTTGTACTGGGATCAATCCCAAAAGACCTGCAATTA--------------------------------------------------------------------------------
droFic1	scf7180000454113:2707865-2708035 -		CTCGGGAATCGCCTGCGAGGCAAACGGGCGCTGTTCAGGCAAACCCGAGGGCACCTACCTGCCCTCCACCACCGACTGCGGCAGCTTCTCCGTCTGCCAGTGCGAGTGCGAGGTGGAGATGG-AGTGTCCCGAGGGGTTGTACTGGGACCAGGAGATGGAGACCTGCAACTA--------------------------------------------------------------------------------
droEle1	scf7180000491193:3854552-3854722 +		TTCGGGAACCTCCTGCGAGAGTAACGGTCGCTGTCTGGGTCAACGCGAAGGCACGCACTTCCGTTCCACGACAAATTGCGGTAACTATGTCGTCTGCCAGTGCGAGTGCGAGGTCGAGATGG-AGTGTCCTGATGGGTTGTACTGGGACCAAAACAAGCAGACCTGCAATTA--------------------------------------------------------------------------------
droRho1	scf7180000780179:26592-26762 -		TTCGGGGATCGCCTGTGTGAGTAATGGTCGCTGTTTGGGTGAACGCGAGGGTACCTTCTTCCGATCCACGTCAAATTGTGGCAACTATGTCGTCTGCCAGTGTGAGTGCGAGGTCGAGATGG-AGTGCCCTGGTGGGTTGTACTGGGACCAGGACATGCAGACCTGCAATTA--------------------------------------------------------------------------------
droBia1	scf7180000302428:4186507-4186677 +		CTCGGGCATCGCCTGCGAGAGTAATGGACGCTGTTTGGGCCAACCCGAGGGTACATTCTTCAGCTCCACCAAAAGCTGCGGCAACTATGTCGTCTGCCAGTGCGAGTGTGAAGTCGAGATGG-AGTGCCCCGATGGACTGTACTGGGACCAGGACCGGCTGACCTGCAATTA--------------------------------------------------------------------------------
droTak1	scf7180000415741:174961-175131 -		TTCAGGAATCGCCTGCGAGAGCAATGGTCGTTGCTTAGGTAAAAGCGAAGGCACATTCTTCCGGTCCACCACAAATTGTGGTAACTATGTCATCTGCCAGTGTGGCTGTGAAGTCGAGATGG-AGTGTCCCGATGGATTGTACTGGGACGAAGAATTGCAGACCTGCAATTA--------------------------------------------------------------------------------
droEug1	scf7180000409466:4033412-4033582 +		TTCGGGAATCGCCTGCGAAAGTAATGGTCGTTGTTTGGGTCAACGCGAGGGTACTTATTTCAACTCCACAACGAATTGTGGCAAATATGTCGTCTGTCAGTGTGAATGTGAAGTCGAGATGG-AGTGCCCTGATGGATTGTACTGGGACCAAGACAAGCTGACCTGCAACTA--------------------------------------------------------------------------------
dm3	chr3L:11942108-11942278 +		TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCATGGGACAACGTGAGGGTACCTACTTAAAGTCCACCACAAATTGTAGCAATTACGTCGTCTGCCAGTGTGAATGCGAGGTCGAGATGG-AGTGCGCCGATGGCTTGTATTGGGACGAAAGCTTGCAGACCTGCAATTA--------------------------------------------------------------------------------
droSim2	3l:11645903-11646073 +		TTCGGGCATCGCCTGCGAGAGTAATGGCCGTTGCATGGGACAACGTGAGGGTACCTACTTCAAGTCCACCACAAGTTGTGGCAACTACGTCGTCTGCCAGTGTGAATGCGAGGTCGAGATGG-AGTGCGCCGATGGCTTGTACTGGGACGAAAGCTTGCTGACCTGCAATTA--------------------------------------------------------------------------------
droSec2	scaffold_0:4130729-4130899 +		TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCATGGGACAACGTGAGGGTACCTACTTCAAGTCCACCACAAGTTGTGGCAATTACGTCGTCTGCCAGTGTGAATGCGAGGTCGAGATGG-AGTGCGCCGATGGCCTGTACTGGGACGAAAGCTTGCTGACCTGCAATTA--------------------------------------------------------------------------------
droYak3	3L:11987726-11987896 +		TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCTTGGGAGCACACGAGGGCACCTACTTCAATTCCACCACAAATTGTGGCCAGTACGTCGTCTGCCAGTGTGAGTGTGAGGTCGAGATGG-AGTGCCCCGATGGCTTATACTGGGATCAAAAATTGTTAACCTGCAATTA--------------------------------------------------------------------------------
droEre2	scaffold_4784:11932740-11932910 +		TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCTTGGGACAACGCGAGGGTACCTACTTTAAGTCCACCACAAGTTGTGGCAAGTACGTCGTCTGCCAGTGTGAGTGCGAAGTAGACCTGG-AGTGCCCCAATGGGTTGTACTGGGACGAAAGCTTGCTGACCTGCAATTA--------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droPer2

CTCGGGCATCGCTTGCGAGACCAACGGACGCTGCCTGAATGCACGGGAGGGTACCTATTTACCATCCGAGATTAGTTGCAATGGATATGTCATCTGCCAATGCGAGTGCGAGGTCGAGTTGACAGTGTCCCGATGGCTTGTACTGGGACCAGGACCTATTGAC-TGCAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................AACGGACGCTGCCTGAATGCACGGGA............................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
.....GCATCGCTTGCGAGACCAACGGACGCT............................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
..............GCGAGACCAACGGACGCTGCCT........................................................................................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0
......................AACGGACGCTGCCTGAATGCACGGGAGG..........................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
...............CGAGACCAACGGACGCTGCC.........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......CATCGCTTGCGAGACCAACGGAC...............................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........CTTGCGAGACCAACGGACGCTGCCTGG......................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................ACCAACGGACGCTGCCTGAATGCACGGGG............................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................CGAGATTAGTTGCAATGGATATGT..................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............TGCGAGACCAACGGACGCTGCCTGAAT....................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................CAACGGACGCTGCCTGAATGCACGGGA............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........CTTGCGAGACCAACGGACGCT............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................GCGAGTGCGAGGTCGAGTTGACGT...............................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
................................................................................................................................CCCGATGGCTTGTACTGGGACCAGGACCT...............................................................................................	29	2	0.50	1	1	0	0	0	0	0

dp5

CTCGGGCATCGCTTGCGAGACCAACGGACGCTGCCTGAATGCACGGGAGGGTACCTATTTACCATCCGAGATTAGTTGCAATGGATATGTCATCTGCCAATGCGAGTGCGAGGTCGAGTTGA-CGTGTCCCGATGGCTTGTACTGGGACCAGGACCTATTGACTTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................AACGGACGCTGCCTGAATGCACGGGAG...........................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	3
......................AACGGACGCTGCCTGAATGCACGGGAGG..........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................AATGCGAGTGCGAGGTCGAGTT....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CAACGGACGCTGCCTGAATGCACGGGAG...........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droWil2

ATCGGGCATTGCCTGTGAGAGTAACGGTCGCTGTTTGGGAAAACGCGAAGGAACCTACTTGCCGTCAGTTACCAGTTGCAATAAATATGTAGTCTGCCAATGTGAATGCGAGGTGGAAATGC-CCTGTGACGATAATCTCTACTGGGATCAAGACCTCATGACCTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................TCTCTACTGGGATCAAGACCT...............................................................................................	21	1	2.00	2	0	0	0	2	0
.......................................................TACTTGCCGTCAGTTACCAGTT...............................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.......ATTGCCTGTGAGAGTAAC...................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................GAACCTACTTGCCGTCAG........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
....................................................................................ATATGTAGTCTGCCAATGTGA...................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......ATTGCCTGTGAGAGTAACGGT................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0

droVir3

CTCCGGCATATCCTGTGAGAGCAACGGTCGATGTCTGGGACAACGCGAGGGCATACTGTTTCCATCCCTGACCAGTTGCAGTGGCTATGTGGTCTGCCAGTGCGAGTGCGAGGTTCCAATGG-AGTGCGGACAGGGCTTATACTGGGATCAAAAACTGTCCACTTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................CGATGTCTGGGACAACGCGAGGGC........................................................................................................................................................................................................	24	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................GGTCGATGTCTGGGACAACGCGAGGGC........................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
................................GTCTGGGACAACGCGAGGGC........................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GAGTGCGAGGTTCCAATGG-AGTGCGGAC........................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TCCAATGG-AGTGCGGACA.......................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................GAGTGCGAGGTTCCAATGG-.................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................GTGCGGACAGGGCTTATA..............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................TGG-AGTGCGGACAGGGCTTA................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................TGTCTGGGACAACGCGAGGGC........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................ATCAAAAACTGTCCACTTGCAAC..................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TATGTGGTCTGCCAGTGCGA...................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTCCATCCCTGACCAGTT...............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................GGCTATGTGGTCTGCCAGTGCGA...................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GACAACGCGAGGGCATACTGTTTCC.............................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AAACTGTCCACTTGCAACT.................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTCCATCCCTGACCAGTTGCAGT..........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TCAAAAACTGTCCACTTGC.....................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CGATGTCTGGGACAACGCGAGGG.........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

CTCGGGCATTTCCTGTGAAAGCAACGGCCGCTGCCTGGGACAGCGCGAAGGCACCTATTTCCCATCCCTGACCAGCTGCAGCGGCTACGTCGTCTGCCAGTGCGAGTGTGAGGT------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................CTATTTCCCATCCCTGACCA..................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................GTCTGCCAGTGCGAGTGTGA.............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................GCGAAGGCACCTATTTCCC.............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................CAGCTGCAGCGGCTACGTCGTCTGCCA.........................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................ACAGCGCGAAGGCACCTATTTCCC.............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................CGCTGCCTGGGACAGCGCGAAGGCACCTA...................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......................ACGGCCGCTGCCTGGGACAGCGC..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................CTATTTCCCATCCCTGACCAGCTGCA............................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................GCTGCCTGGGACAGCGCGAAGGCA.......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

CTCCGGCATCTCCTGTGAGAGCAACGGTCGCTGTTTGGGCCAACGCGAGGGCACCTTGTTCCCATCCCTGGTCAGTTGTAGCGAATATGTAGTCTGCCAGTGCGAGTGTGAAGTGGACATGA-CGTGCGGACAAGGCTTGTACTGGGATCAGAAGCTGCTGACTTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

TTCGGGCACCGCCTGCGAAAGCAATGGCCGCTGCTTGGGCAAGCCCGAGGGAATCTTCTTGCCCTCCACCACGAGCTGCAATGAATATGTCGTCTGTCAGTGCGAGTGCGAGGTGGAAATGT-CCTGTCCGGTAGGTCTTTACTGGGACCAAGATCAGAGAACTTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................CTTTACTGGGACCAAGATCAGAGAA..........................................................................................	25	1	1.00	1	0	0	1	0	0	0
..................................................GAATCTTCTTGCCCTCCACCACGAGCC...............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................CGAGTGCGAGGTGGAAATGT-CCTGTCC..........................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................GTCTGTCAGTGCGAGTGCGAGGTG.........................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
..................................................................................GAATATGTCGTCTGTCAGTGC.....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................CTTTACTGGGACCAAGATCAGA.............................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................AGCAATGGCCGCTGCTTGGGC....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................CTGTCAGTGCGAGTGCGAGGT..........................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

CTCGGGCACCGCCTGCGAAAGCAACGGCAGGTGTTTGGGCCAGCTTGAGGGAACCTATTTGAAGTCCACCACAAGCTGCAATGGCTATGTCGTCTGCCAGTGCGAATGCGAGGTGGAAATGT-CCTGTCCTGTGGGCCTTTACTGGGACCAG----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTCTGGCACATCCTGTGAGAGTAACGGTCGTTGCTTGGGCAAAAAGGAGGGTACTTTCCTGCCTTCAGAGACAAACTGTGGACGGTATGTGGTTTGCCAGTGCGAGTGTGAAGTCGAGATGG-AGTGCTCAGATGGGTTGTACTGGGATCAATCCCAAAAGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCGGGAATCGCCTGCGAGGCAAACGGGCGCTGTTCAGGCAAACCCGAGGGCACCTACCTGCCCTCCACCACCGACTGCGGCAGCTTCTCCGTCTGCCAGTGCGAGTGCGAGGTGGAGATGG-AGTGTCCCGAGGGGTTGTACTGGGACCAGGAGATGGAGACCTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCGGGAACCTCCTGCGAGAGTAACGGTCGCTGTCTGGGTCAACGCGAAGGCACGCACTTCCGTTCCACGACAAATTGCGGTAACTATGTCGTCTGCCAGTGCGAGTGCGAGGTCGAGATGG-AGTGTCCTGATGGGTTGTACTGGGACCAAAACAAGCAGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCGGGGATCGCCTGTGTGAGTAATGGTCGCTGTTTGGGTGAACGCGAGGGTACCTTCTTCCGATCCACGTCAAATTGTGGCAACTATGTCGTCTGCCAGTGTGAGTGCGAGGTCGAGATGG-AGTGCCCTGGTGGGTTGTACTGGGACCAGGACATGCAGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTCGGGCATCGCCTGCGAGAGTAATGGACGCTGTTTGGGCCAACCCGAGGGTACATTCTTCAGCTCCACCAAAAGCTGCGGCAACTATGTCGTCTGCCAGTGCGAGTGTGAAGTCGAGATGG-AGTGCCCCGATGGACTGTACTGGGACCAGGACCGGCTGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCAGGAATCGCCTGCGAGAGCAATGGTCGTTGCTTAGGTAAAAGCGAAGGCACATTCTTCCGGTCCACCACAAATTGTGGTAACTATGTCATCTGCCAGTGTGGCTGTGAAGTCGAGATGG-AGTGTCCCGATGGATTGTACTGGGACGAAGAATTGCAGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTCGGGAATCGCCTGCGAAAGTAATGGTCGTTGTTTGGGTCAACGCGAGGGTACTTATTTCAACTCCACAACGAATTGTGGCAAATATGTCGTCTGTCAGTGTGAATGTGAAGTCGAGATGG-AGTGCCCTGATGGATTGTACTGGGACCAAGACAAGCTGACCTGCAACTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCATGGGACAACGTGAGGGTACCTACTTAAAGTCCACCACAAATTGTAGCAATTACGTCGTCTGCCAGTGTGAATGCGAGGTCGAGATGG-AGTGCGCCGATGGCTTGTATTGGGACGAAAGCTTGCAGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................GTGTGAATGCGAGGTCGAGATGG-AGT..............................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................CGAGATGG-AGTGCGCCGATGGC...................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GCCAGTGTGAATGCGAGGTCG........................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GCCGTTGCATGGGACAAC................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................GCGAGGTCGAGATGG-AGT..............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CTGCCAGTGTGAATGCGAG............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AATCGCCTGCGAGAGTAAT...................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GATGGCTTGTATTGGGACGAA....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TGTATTGGGACGAAAGCTTG..............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCGAGAGTAATGGCCGTTGCATGGGA....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTACCTACTTAAAGTCCACCAC....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTCGGGCATCGCCTGCGAGAGTAATGGCCGTTGCATGGGACAACGTGAGGGTACCTACTTCAAGTCCACCACAAGTTGTGGCAACTACGTCGTCTGCCAGTGTGAATGCGAGGTCGAGATGG-AGTGCGCCGATGGCTTGTACTGGGACGAAAGCTTGCTGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................ATGCGAGGTCGAGATGG-AGTGC............................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GCCAGTGTGAATGCGAGGTCGA.......................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCATGGGACAACGTGAGGGTACCTACTTCAAGTCCACCACAAGTTGTGGCAATTACGTCGTCTGCCAGTGTGAATGCGAGGTCGAGATGG-AGTGCGCCGATGGCCTGTACTGGGACGAAAGCTTGCTGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................GTTGCATGGGACAACGTGAGG..........................................................................................................................................................................................................	21	1	7.00	7	0	0	7	0
..............................................................................................................................GCGCCGATGGCCTGTACTGGGA........................................................................................................	22	1	7.00	7	0	0	7	0
.....................................................................................................GTGAATGCGAGGTCGAGATGG-AGT..............................................................................................................................	24	1	7.00	7	0	0	7	0
...................................................................................................................................GATGGCCTGTACTGGGAC.......................................................................................................	18	1	5.00	5	0	0	5	0
..................................................................................................................................CGATGGCCTGTACTGGGA........................................................................................................	18	1	5.00	5	0	0	5	0
..................................................................................................................CGAGATGG-AGTGCGCCGATGGC...................................................................................................................	22	1	5.00	5	0	0	5	0
..................................................................................AATTACGTCGTCTGCCAGT.......................................................................................................................................................	19	1	5.00	5	0	0	5	0
..................................................................................................................CGAGATGG-AGTGCGCCGATG.....................................................................................................................	20	1	4.00	4	0	0	4	0
....................GTAATGGCCGTTGCATGGGA....................................................................................................................................................................................................................	20	1	4.00	4	0	0	4	0
................................................................................................................................GCCGATGGCCTGTACTGGGA........................................................................................................	20	1	4.00	4	0	0	4	0
...................................................................................................................GAGATGG-AGTGCGCCGAT......................................................................................................................	18	1	4.00	4	0	0	4	0
...............................................................................................................................CGCCGATGGCCTGTACTGGGA........................................................................................................	21	1	4.00	4	0	0	4	0
.........................................................................................................ATGCGAGGTCGAGATGG-AGT..............................................................................................................................	20	1	4.00	4	0	0	4	0
..................GAGTAATGGCCGTTGCATGGGA....................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0
......................AATGGCCGTTGCATGGGA....................................................................................................................................................................................................................	18	1	3.00	3	0	0	3	0
............................................................................................................................GTGCGCCGATGGCCTGTACTGGGA........................................................................................................	24	1	3.00	3	0	0	3	0
..................................................................................................................CGAGATGG-AGTGCGCCGAT......................................................................................................................	19	1	3.00	3	0	0	3	0
................................GCATGGGACAACGTGAGG..........................................................................................................................................................................................................	18	1	3.00	3	0	0	3	0
......................AATGGCCGTTGCATGGGACAACGT..............................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0
.........................................................................................................ATGCGAGGTCGAGATGG-A................................................................................................................................	18	1	3.00	3	0	0	3	0
..................................................................................................................................CGATGGCCTGTACTGGGAC.......................................................................................................	19	1	3.00	3	0	0	3	0
................................GCATGGGACAACGTGAGGGT........................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0
....................................................................................................................................................CGAAAGCTTGCTGACCTGC.....................................................................................	19	1	3.00	3	0	0	3	0
.....................................................................................................GTGAATGCGAGGTCGAGATGG-A................................................................................................................................	22	1	3.00	3	0	0	3	0
..CGGGAATCGCCTGCGAGAGT......................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0
...................AGTAATGGCCGTTGCATGG......................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
............................CGTTGCATGGGACAACGTGAGG..........................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
.....................................................................................................GTGAATGCGAGGTCGAGATG...................................................................................................................................	20	1	2.00	2	0	0	2	0
..............................TTGCATGGGACAACGTGAGG..........................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
..CGGGAATCGCCTGCGAGA........................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
....................................................................................................................................................CGAAAGCTTGCTGACCTG......................................................................................	18	1	2.00	2	0	0	2	0
............CTGCGAGAGTAATGGCCGT.............................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
................GAGAGTAATGGCCGTTGCATGGGAC...................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
........................................CAACGTGAGGGTACCTACTTCAA.............................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
..................................................................................................................................CGATGGCCTGTACTGGGACG......................................................................................................	20	1	2.00	2	0	0	2	0
.......................................................................................................GAATGCGAGGTCGAGATGG-AGT..............................................................................................................................	22	1	2.00	2	0	0	2	0
.............................................................................................CTGCCAGTGTGAATGCGAG............................................................................................................................................	19	1	2.00	2	0	0	2	0
.....................................................................................................................GATGG-AGTGCGCCGATGGCCT.................................................................................................................	21	1	2.00	2	0	0	2	0
.......................................................................................................GAATGCGAGGTCGAGATGG-A................................................................................................................................	20	1	2.00	2	0	0	2	0
.............................................................................................CTGCCAGTGTGAATGCGAGGTC.........................................................................................................................................	22	1	2.00	2	0	0	2	0
...GGGAATCGCCTGCGAGAGT......................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
.......ATCGCCTGCGAGAGTAATGGC................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
..................................................................................................................................CGATGGCCTGTACTGGGACGAAAGCT................................................................................................	26	1	2.00	2	0	0	2	0
..................................................................................................................CGAGATGG-AGTGCGCCGATGGCCT.................................................................................................................	24	1	2.00	2	0	0	2	0
.........................................................CTTCAAGTCCACCACAAGT................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
..........................................................................................CGTCTGCCAGTGTGAATGC...............................................................................................................................................	19	1	2.00	2	0	0	2	0
.........................GGCCGTTGCATGGGACAACGTGAGG..........................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
.......ATCGCCTGCGAGAGTAAT...................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.................................................................................................CAGTGTGAATGCGAGGTCGAGATGG-A................................................................................................................................	26	1	2.00	2	0	0	2	0
..............................................................................................................................GCGCCGATGGCCTGTACTGGGAC.......................................................................................................	23	1	2.00	2	0	0	2	0
............CTGCGAGAGTAATGGCCGTTGCATGG......................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..................................................................................................................CGAGATGG-AGTGCGCCGATGGCC..................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................................................................G-AGTGCGCCGATGGCCTGTACTGGGAC.......................................................................................................	27	1	1.00	1	0	0	1	0
............................................................................................................CGAGGTCGAGATGG-AGTGCGC..........................................................................................................................	21	1	1.00	1	0	0	1	0
..........................................................................GTTGTGGCAATTACGTCGTCTGCCAGT.......................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................................................................................................................GAGATGG-AGTGCGCCGATGGCCTGTACT............................................................................................................	28	1	1.00	1	0	0	1	0
......................AATGGCCGTTGCATGGGACAACGTGA............................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
....................................GGGACAACGTGAGGGTACCTACTTCAA.............................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.........................................................................................................................................CTGTACTGGGACGAAAGCTTGCT............................................................................................	23	1	1.00	1	0	0	1	0
......................................GACAACGTGAGGGTACCTACTTCA..............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
....................................................................................................................................ATGGCCTGTACTGGGACGAAAGCT................................................................................................	24	1	1.00	1	0	0	1	0
..CGGGAATCGCCTGCGAGAGTAATGGCC...............................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.....................................................................................................................................................GAAAGCTTGCTGACCTGCA....................................................................................	19	1	1.00	1	0	0	1	0
...................................................................................ATTACGTCGTCTGCCAGT.......................................................................................................................................................	18	1	1.00	1	0	0	1	0
...............................................................................................................GGTCGAGATGG-AGTGCGCCGAT......................................................................................................................	22	1	1.00	1	0	0	1	0
................................GCATGGGACAACGTGAGGGTACCTAC..................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.....................................................................................................................GATGG-AGTGCGCCGATGGC...................................................................................................................	19	1	1.00	1	0	0	1	0
...............................................................................................................GGTCGAGATGG-AGTGCGCCGATG.....................................................................................................................	23	1	1.00	1	0	0	1	0
..................................................................................AATTACGTCGTCTGCCAGTGTG....................................................................................................................................................	22	1	1.00	1	0	0	1	0
....................GTAATGGCCGTTGCATGGG.....................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........................................................................................................TGCGAGGTCGAGATGG-AGT..............................................................................................................................	19	1	1.00	1	0	0	1	0
.........................................................................................................ATGCGAGGTCGAGATGG-AG...............................................................................................................................	19	1	1.00	1	0	0	1	0
........................................................................................................AATGCGAGGTCGAGATGG-.................................................................................................................................	18	1	1.00	1	0	0	1	0
...................................................................................................................GAGATGG-AGTGCGCCGATGGCCTGT...............................................................................................................	25	1	1.00	1	0	0	1	0
...................................................................................................GTGTGAATGCGAGGTCGAGATGG-AGT..............................................................................................................................	26	1	1.00	1	0	0	1	0
...............CGAGAGTAATGGCCGTTGCATGGGA....................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..............................................................................................................................GCGCCGATGGCCTGTACTGGGACGAA....................................................................................................	26	1	1.00	1	0	0	1	0
..........................GCCGTTGCATGGGACAACGTGAGG..........................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..........................................................................GTTGTGGCAATTACGTCGT...............................................................................................................................................................	19	1	1.00	1	0	0	1	0
.............................GTTGCATGGGACAACGTGAGGGT........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
................GAGAGTAATGGCCGTTGCATGGGA....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...................................................................................................................................GATGGCCTGTACTGGGACGAA....................................................................................................	21	1	1.00	1	0	0	1	0
..................................................................................................................................CGATGGCCTGTACTGGGACGAA....................................................................................................	22	1	1.00	1	0	0	1	0
................GAGAGTAATGGCCGTTGC..........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................CAACGTGAGGGTACCTACTTCAAGTCC.........................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
................................................................................................................GTCGAGATGG-AGTGCGCCGATGGC...................................................................................................................	24	1	1.00	1	0	0	1	0
.....................................................................................................GTGAATGCGAGGTCGAGAT....................................................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................GCCGATGGCCTGTACTGGGACGAAGC..................................................................................................	26	1	1.00	1	0	0	1	0
.....................................................................................................GTGAATGCGAGGTCGAGATGG-.................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................................................................................................................CGCCGATGGCCTGTACTGGGACGAAAGC.................................................................................................	28	1	1.00	1	0	0	1	0
........................................................................................................AATGCGAGGTCGAGATGG-AGTGCGCC.........................................................................................................................	26	1	1.00	1	0	0	1	0
.......................................................................................................GAATGCGAGGTCGAGATGG-AGTGC............................................................................................................................	24	1	1.00	1	0	0	1	0
..................................ATGGGACAACGTGAGGGT........................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...............................TGCATGGGACAACGTGAGGGTA.......................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................AATGGCCGTTGCATGGGACA..................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.......................................ACAACGTGAGGGTACCTACTTCA..............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................GTCTGCCAGTGTGAATGCGAG............................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................CAACGTGAGGGTACCTACTTCA..............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...............................TGCATGGGACAACGTGAGGGT........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.........CGCCTGCGAGAGTAATGGC................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................CCGATGGCCTGTACTGGGAC.......................................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................AGTGCGCCGATGGCCTGTACTGGG.........................................................................................................	24	1	1.00	1	0	0	1	0
..............GCGAGAGTAATGGCCGTTGCATGG......................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............................................................................................................GAGGTCGAGATGG-AGTGCGCC.........................................................................................................................	21	1	1.00	1	0	0	1	0
....................................................................................................................AGATGG-AGTGCGCCGATGGCC..................................................................................................................	21	1	1.00	1	0	0	1	0
...................................................................................................GTGTGAATGCGAGGTCGA.......................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................................................................................................................................CTGTACTGGGACGAAAGCTTG..............................................................................................	21	1	1.00	1	0	0	1	0
....................................................................................................TGTGAATGCGAGGTCGAGATGG-.................................................................................................................................	22	1	1.00	1	0	0	1	0
......................................................................ACAAGTTGTGGCAATTACGT..................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................................................................................................................CTGTACTGGGACGAAAGC.................................................................................................	18	1	1.00	1	0	0	1	0
.................................................................................................................TCGAGATGG-AGTGCGCCGATGGCCTGTA..............................................................................................................	28	1	1.00	1	0	0	1	0
.......................ATGGCCGTTGCATGGGACAACGT..............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
......................AATGGCCGTTGCATGGGACAA.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................AATGCGAGGTCGAGATGG-A................................................................................................................................	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................GAAAGCTTGCTGACCTGCAAT..................................................................................	21	1	1.00	1	0	0	1	0
...........................................................................................................GCGAGGTCGAGATGG-AGT..............................................................................................................................	18	1	1.00	1	0	0	1	0
.................................................................................................................................CCGATGGCCTGTACTGGGACGAAAGC.................................................................................................	26	1	1.00	1	0	0	1	0
......................................................................................................................................GGCCTGTACTGGGACGAA....................................................................................................	18	1	1.00	1	0	0	1	0
.....................................................................................TACGTCGTCTGCCAGTGTGAATGC...............................................................................................................................................	24	1	1.00	1	0	0	1	0
......................................................................................................................................GGCCTGTACTGGGACGAAAGCTTGCT............................................................................................	26	1	1.00	1	0	0	1	0
.....................................................................................................GTGAATGCGAGGTCGAGATGG-AGTG.............................................................................................................................	25	1	1.00	1	0	0	1	0
.........................GGCCGTTGCATGGGACAACGTGAGGGT........................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.....................................................................................................................................................GAAAGCTTGCTGACCTGC.....................................................................................	18	1	1.00	1	0	0	1	0
...................................................................................................................................GATGGCCTGTACTGGGACGAAA...................................................................................................	22	1	1.00	1	0	0	1	0
............................................................................................TCTGCCAGTGTGAATGCGAGG...........................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................................................GTCGAGATGG-AGTGCGCCGATGGCCT.................................................................................................................	26	1	1.00	1	0	0	1	0
.......ATCGCCTGCGAGAGTAATGGCCGTTGC..........................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.......................................ACAACGTGAGGGTACCTACTTCAA.............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................GTCGAGATGG-AGTGCGCC.........................................................................................................................	18	1	1.00	1	0	0	1	0
..................................................................................AATTACGTCGTCTGCCAGTGT.....................................................................................................................................................	21	1	1.00	1	0	0	1	0
.................................................................................CAATTACGTCGTCTGCCAGT.......................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................GTCTGCCAGTGTGAATGCGAGGT..........................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................................................ATGCGAGGTCGAGATGG-AGTGCGC..........................................................................................................................	24	1	1.00	1	0	0	1	0
..................................................................................................................................CGATGGCCTGTACTGGGACGAAAGC.................................................................................................	25	1	1.00	1	0	0	1	0
...................................................................................................................................GATGGCCTGTACTGGGACGAAAG..................................................................................................	23	1	1.00	1	0	0	1	0
........................................................................................................AATGCGAGGTCGAGATGG-AGTG.............................................................................................................................	22	1	1.00	1	0	0	1	0
.....................................................................................................................................TGGCCTGTACTGGGACGAAAGC.................................................................................................	22	1	1.00	1	0	0	1	0
..........................................ACGTGAGGGTACCTACTTCAA.............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.........................GGCCGTTGCATGGGACAACGT..............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.........................................................CTTCAAGTCCACCACAAGTTGT.............................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......ATCGCCTGCGAGAGTAATGGCC...............................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...............................TGCATGGGACAACGTGAGGGTAC......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................GTCTGCCAGTGTGAATGC...............................................................................................................................................	18	1	1.00	1	0	0	1	0
...............................................................................................................GGTCGAGATGG-AGTGCGC..........................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCTTGGGAGCACACGAGGGCACCTACTTCAATTCCACCACAAATTGTGGCCAGTACGTCGTCTGCCAGTGTGAGTGTGAGGTCGAGATGG-AGTGCCCCGATGGCTTATACTGGGATCAAAAATTGTTAACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................TACGTCGTCTGCCAGTGTGAGTGTGA.............................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................GATCAAAAATTGTTAACCTGCA....................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................CTGCCAGTGTGAGTGTGAGGTCGA.......................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTCGGGAATCGCCTGCGAGAGTAATGGCCGTTGCTTGGGACAACGCGAGGGTACCTACTTTAAGTCCACCACAAGTTGTGGCAAGTACGTCGTCTGCCAGTGTGAGTGCGAAGTAGACCTGG-AGTGCCCCAATGGGTTGTACTGGGACGAAAGCTTGCTGACCTGCAATTA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................GCCCCAATGGGTTGTACTGGGAC.......................................................................................................	23	1	2.00	2	0	1	0	1	0	0	0
............CTGCGAGAGTAATGGCCGTTGCTTGGGAC...................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
....................GTAATGGCCGTTGCTTGGGAC...................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
............................CGTTGCTTGGGACAACGCGAGGGT........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................CTGCCAGTGTGAGTGCGAAGTA.........................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
......................................................................................ACGTCGTCTGCCAGTGTG....................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................CAGTGTGAGTGCGAAGTAGACCTGG-A................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................TAGACCTGG-AGTGCCCCAATGGGT..................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...........................CCGTTGCTTGGGACAACGCGAGGGT........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
..............................................................................TGGCAAGTACGTCGTCTGCC..........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................AGTAATGGCCGTTGCTTGGGA....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.......ATCGCCTGCGAGAGTAATGGC................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................AATGGGTTGTACTGGGACGAAAGCTTGCT............................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
................................GCTTGGGACAACGCGAGGGTAC......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................TGCGAAGTAGACCTGG-AG...............................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................GTACTGGGACGAAAGCTTGCT............................................................................................	21	1	1.00	1	0	0	0	1	0	0	0

-21.6	-21.5	-21.2	-21.1

dpe_2138

scaffold_9:229329-229479 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads