ID:

dpe_2133

 Coordinate:

scaffold_88:178140-178290 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -33.3 -33.1

Flybase annnotation

CDS [Dper\GL11877-cds]; exon [dper_GLEANR_12043:2]; intron [Dper\GL11877-in]

No Repeatable elements found

mature
  1. dpe_2133  scaffold_88:178232-178253 -
  2. scaffold_88:181504-181525 -
  3. scaffold_88:194104-194125 +
  4. scaffold_1987:5345-5366 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCCCACCCCACCCCACAACGCCATGTTGCGCATAATCCTATTTGGGTGGCTGTTGGCCGGCCCGGCACTCCTGGTCCACTCGGAGCTCACAGAACTAGATGGCCCCAACATATGCAAGAGGCGGGAGAGGTAAGTACTCGTCGGAGAGACTAATCACAGGCACTCATCCATCTCCATCCATCTATCCCATCCACCCATAGCTACCCCGTTGAAGTTGTCTACACTGAGCTGCAGTCGTACCAGGAGCGTG
**************************************************((((..((((...)))).((((.((....)).))))...))))...(((((((.........(((...((((.(((.(((((........(((.....))).........)).))).))).))))))))))))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V111
male body		 V057
head
 V050
head
.......................................................................................TCACAGAACTAGATGGCCCCAA.............................................................................................................................................. 22 0 4 0.50 2 0 2 0 0 0
................................ATAATCCTATTTGGGTGGCTGTT.................................................................................................................................................................................................... 23 0 4 0.50 2 1 1 0 0 0
....................................................................................................................................................................................................................................GCTGCAGTCGTACCAGGAGC... 20 0 5 0.40 2 0 2 0 0 0
........................................................................................................CCCAACATATGCAAGAGGCGGGA............................................................................................................................ 23 0 4 0.25 1 1 0 0 0 0
...........................................................................................AGAACTAGATGGCCCCAAC............................................................................................................................................. 19 0 4 0.25 1 1 0 0 0 0
.......................................................................................................CCCCAACATATGCAAGAGGCGGGAG........................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
........................................................................................CACAGAACTAGATGGCCC................................................................................................................................................. 18 0 4 0.25 1 1 0 0 0 0
.............................................................................................................CATATGCAAGAGGCGGGA............................................................................................................................ 18 0 4 0.25 1 1 0 0 0 0
...................................ATCCTATTTGGGTGGCTGTT.................................................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0
...........................................................................................................AACATATGCAAGAGGCGGG............................................................................................................................. 19 0 4 0.25 1 0 0 0 1 0
........................................................................................CACAGAACTAGATGGCCCCAA.............................................................................................................................................. 21 0 4 0.25 1 0 1 0 0 0
........................................ATTTGGGTGGCTGTTGGCCG............................................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0
..............................................................................ACTCGGAGCTCACAGAACTAGATGGCCCC................................................................................................................................................ 29 0 4 0.25 1 0 1 0 0 0
........................................................................................CACAGAACTAGATGGCCCCAAC............................................................................................................................................. 22 0 4 0.25 1 0 0 1 0 0
.........................GTTGCGCATAATCCTATTTGGGTGGCT....................................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................................................................................................CTACACTGAGCTGCAGTCGTA........... 21 0 5 0.20 1 0 0 1 0 0
...................................................................................................................................................................................................................................AGCTGCAGTCGTGCCAGGAGC... 21 1 5 0.20 1 0 0 1 0 0
...................................................................................................................................................................................................................GAAGTTGTCTACACTGAGC..................... 19 0 5 0.20 1 0 0 1 0 0
.....................................................................................................................................................................................................AGAGCTACCCCGTTGAAGTTG................................. 21 1 5 0.20 1 0 0 1 0 0
...........................................................................................................................................................................................................................CTACACTGAGCTGCAGTCGT............ 20 0 5 0.20 1 1 0 0 0 0
.........................................................................................................................................................................................................CTACCCCGTTGAAGTTGTCTACACTGA....................... 27 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................................................................................................................GAGCTGCAGTCGTACCAGG...... 19 0 5 0.20 1 1 0 0 0 0
......................................................................................................................................................................................CTATCCCATCCACCCATGGCT................................................ 21 1 5 0.20 1 0 0 0 0 1
....................................................................................................................AAGAGGCGGGACTGGTAAGG................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0
.....................................................................................................................................AGTACTCGTCGGAGAAGC.................................................................................................... 18 2 13 0.08 1 0 1 0 0 0
.........................................GTTGGGAGGCTGTTGGCCT............................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TGGGGTGGGGTGGGGTGTTGCGGTACAACGCGTATTAGGATAAACCCACCGACAACCGGCCGGGCCGTGAGGACCAGGTGAGCCTCGAGTGTCTTGATCTACCGGGGTTGTATACGTTCTCCGCCCTCTCCATTCATGAGCAGCCTCTCTGATTAGTGTCCGTGAGTAGGTAGAGGTAGGTAGATAGGGTAGGTGGGTATCGATGGGGCAACTTCAACAGATGTGACTCGACGTCAGCATGGTCCTCGCAC
**************************************************((((..((((...)))).((((.((....)).))))...))))...(((((((.........(((...((((.(((.(((((........(((.....))).........)).))).))).))))))))))))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V057
head
 M021
embryo
 V050
head
 V042
embryo
........................................................................................................................................................................................TAGGGCAGGTGTGAATCGATGGG............................................ 23 3 5 108.20 541 462 64 15 0 0 0
..........................................................................................................................................................................................GGGCAGGTGTGAATCGATGGG............................................ 21 3 7 95.29 667 456 171 39 0 1 0
.........................................................................................................................................................................................AGGGCAGGTGTGAATCGATGGG............................................ 22 3 5 81.00 405 344 49 12 0 0 0
...........................................................................................................................................................................................GGCAGGTGTGAATCGATGGG............................................ 20 3 8 68.50 548 342 179 26 0 1 0
........................................................................................................................................................................................TAGGGCAGGTGTGAATCGATG.............................................. 21 3 5 35.00 175 114 47 14 0 0 0
............................................................................................................................................................................................GCAGGTGTGAATCGATGGG............................................ 19 3 11 33.73 371 303 60 8 0 0 0
.......................................................................................................................................................................................ATAGGGCAGGTGTGAATCGATGGG............................................ 24 3 5 33.40 167 146 16 4 0 1 0
........................................................................................................................................................................................TAGGGCAGGTGTGAATCGATGG............................................. 22 3 5 31.00 155 135 16 4 0 0 0
.........................................................................................................................................................................................AGGGCAGGTGTGAATCGATG.............................................. 20 3 7 25.29 177 136 26 14 0 0 1
.........................................................................................................................................................................................AGGGCAGGTGTGAATCGATGG............................................. 21 3 6 22.67 136 119 12 5 0 0 0
.......................................................................................................................................................................................ATAGGGCAGGTGTGAATCGATGG............................................. 23 3 5 11.80 59 51 7 1 0 0 0
.......................................................................................................................................................................................ATAGGGCAGGTGTGAATCGATG.............................................. 22 3 5 11.80 59 47 8 3 0 1 0
..........................................................................................................................................................................................GAGTAGGTATGTATCGATGGG............................................ 21 3 7 10.57 74 46 17 0 9 0 2
.......................................................................................................................................................................................ATAGGGCAGGTGTGAATCGA................................................ 20 3 5 4.40 22 4 17 1 0 0 0
.........................................................................................................................................................................................AGAGTAGGTATGTATCGATGGG............................................ 22 3 7 4.00 28 21 6 0 0 0 1
..........................................................................................................................................................................................GAGTAGGTATGTATCGATGG............................................. 20 3 14 3.07 43 19 11 0 12 0 1
........................................................................................................................................................................................TAGAGTAGGTATGTATCGATGGG............................................ 23 3 6 2.83 17 7 9 0 0 0 1
........................................................................................................................................................................................TAGGGCAGGTGTGAATCGAT............................................... 20 3 5 2.60 13 5 8 0 0 0 0
........................................................................................................................................................................................TAGAGTAGGTATGTATCGATG.............................................. 21 3 9 2.22 20 9 3 2 4 0 2
.......................................................................................................................................................................................ATAGGGCAGGTGTGAATCG................................................. 19 3 10 2.20 22 10 9 3 0 0 0
........................................................................................................................................................................................TAGGGCAGGTGTGAATCGA................................................ 19 3 16 2.06 33 8 24 1 0 0 0
........................................................................................................................................................................................TAGAGTAGGTATGTATCGATGG............................................. 22 3 6 1.83 11 4 7 0 0 0 0
.......................................................................................................................................................................................ATAGAGTAGGTATGTATCGATGGG............................................ 24 3 5 1.60 8 8 0 0 0 0 0
.......................................................................................................................................................................................ATAGGGCAGGTGTGAATCGAT............................................... 21 3 5 1.60 8 3 5 0 0 0 0
.........................................................................................................................................................................................AGAGTAGGTATGTATCGATGG............................................. 21 3 7 1.57 11 9 2 0 0 0 0
.........................................................................................................................................................................................AGGGCAGGTGTGAATCGAT............................................... 19 3 10 1.50 15 11 2 2 0 0 0
.......................................................................................................................................................................................ATAGAGTAGGTATGTATCGATGG............................................. 23 3 5 1.40 7 4 2 0 1 0 0
............................................................................................................................................................................................GTAGGTATGTATCGATGGG............................................ 19 2 8 1.38 11 5 4 0 0 0 2
.........................................................................................................................................................................................AGAGTAGGTATGTATCGATG.............................................. 20 3 19 1.32 25 13 6 0 6 0 0
............................................................................................................................................................................GAGGTAGGAAGATATGGAAGGT......................................................... 22 3 8 1.00 8 0 0 7 0 1 0
............................................................................................................................................................................GAGGTAGGAAGAAAGGGAAGGT......................................................... 22 3 13 0.85 11 0 0 10 0 1 0
............................................................................................................................................................................GAGGTATGTAGATATGGAAGGT......................................................... 22 3 6 0.83 5 0 0 3 0 0 2
.......................................................................................................................................................................................ATAGAGTAGGTATGTATCGATG.............................................. 22 3 6 0.83 5 4 0 0 1 0 0
............................................................................................................................................................................GAGGTAGGAAGATATGGTAGGT......................................................... 22 2 6 0.67 4 0 0 4 0 0 0
............................................................................................................................................................................GAGGTAGGAAGAAAGGTTAGGT......................................................... 22 3 6 0.67 4 0 0 3 0 1 0
............................................................................................................................................................................GAGGTAGGTAGAAATGGTAGGT......................................................... 22 2 5 0.60 3 0 0 2 0 1 0
..........................................................................................................................................................................................GGGCAGGTGCGAATCGATGGG............................................ 21 3 5 0.60 3 2 0 1 0 0 0
................................................................................................................................................................................TAGGTAGATAGGGTAGGTGG....................................................... 20 0 5 0.60 3 3 0 0 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATATGGTAGGT......................................................... 22 1 5 0.60 3 0 0 1 0 2 0
............................................................................................................................................................................GAGCTAGGTAGATATGGTAGGT......................................................... 22 2 5 0.60 3 0 0 2 0 1 0
...............TGTTGCGGTACAACGCGTATTAGGATA................................................................................................................................................................................................................. 27 0 4 0.50 2 0 0 0 2 0 0
............................................................................................................................................................................GAGCTAGGTAGATAAGGTAGGT......................................................... 22 2 6 0.50 3 0 0 3 0 0 0
............................................................................................................................................................................GAGGTATGAAGATATGGTAGGT......................................................... 22 3 7 0.43 3 0 0 3 0 0 0
............................................................................................................................................................................GAGGTAGGTAGAAATGGAAGGT......................................................... 22 3 7 0.43 3 0 0 1 0 2 0
............................................................................................................................................................................................................................ATGTGACTCGACGTCAGCATG.......... 21 0 5 0.40 2 1 0 0 1 0 0
............................................................................................................................................................................GAGGTAGGTAGATAAGGTAGGT......................................................... 22 1 5 0.40 2 0 0 0 0 2 0
............................................................................................................................................................................GAGGTATGTAGATATGGTTGGT......................................................... 22 3 5 0.40 2 0 0 2 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATATGGAAGGT......................................................... 22 2 5 0.40 2 0 0 2 0 0 0
..............................................................................................................................................................................................AGGTGTGAATCGATGGGCC.......................................... 19 3 13 0.38 5 2 2 1 0 0 0
............................................................................................................................................................................GAGGTAGGAAGAAATGGTAGGT......................................................... 22 3 13 0.38 5 0 0 5 0 0 0
............................................................................................................................................................................CAGCTAGGTAGATATGGTAGGT......................................................... 22 3 6 0.33 2 0 0 2 0 0 0
................................................................................................................................................................................TAGGTAGGTAGGGTAGGTG........................................................ 19 1 10 0.30 3 3 0 0 0 0 0
............................................................................................................................................................................................GTAGGTATGTATCGATGG............................................. 18 2 20 0.25 5 1 2 0 1 0 1
............................................................................................................................................................................GAGGTATGAAGAAAGGGTAGGT......................................................... 22 3 8 0.25 2 0 0 2 0 0 0
......................................................................GGACCAGGTGAGTCTCGAGTG................................................................................................................................................................ 21 1 4 0.25 1 0 1 0 0 0 0
............................................................................................................................................................................GAGGTACGAAGAAAGGGTAGGT......................................................... 22 3 8 0.25 2 0 0 2 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATATCTTAGGT......................................................... 22 3 8 0.25 2 0 0 1 0 1 0
.....................GGTACAACGCGTATTAGGATA................................................................................................................................................................................................................. 21 0 4 0.25 1 0 0 1 0 0 0
.................TTGCGGTACAACGCGTATTAG..................................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 0 0 1 0
.........................................................................CCAGGTGAGCCTCGAGTGT............................................................................................................................................................... 19 0 4 0.25 1 0 0 1 0 0 0
.................................................................CGTGAGGGCCAGGTGAGCCTC..................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0
........GGTGGGGTGTTGCGGTACA................................................................................................................................................................................................................................ 19 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................................................GTAGGTATGTATCGATGGGTC.......................................... 21 3 12 0.25 3 2 1 0 0 0 0
........GGTGGGGTGTTGCGGTACAAC.............................................................................................................................................................................................................................. 21 0 4 0.25 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGTAGGAAGATATGTTAGGT......................................................... 22 3 9 0.22 2 0 0 0 0 2 0
............................................................................................................................................................................GAGCTAGGTAGATAAGTTAGGT......................................................... 22 3 9 0.22 2 0 0 2 0 0 0
............................................................................................................................................................................GAGGTAGGTAGAAATGTTAGGT......................................................... 22 3 9 0.22 2 0 0 2 0 0 0
........................................................................................................................................................................................TAGGGCAGGTGTGGATCGATG.............................................. 21 3 9 0.22 2 2 0 0 0 0 0
...........................................................................................................................................................................AGAGGGAGGTAGATCGCGTAGGT......................................................... 23 3 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGAAGAAAGGGGAGGT......................................................... 22 3 10 0.20 2 0 0 2 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATATGGGAGGT......................................................... 22 2 5 0.20 1 0 0 1 0 0 0
.................................................................................................................................................................................AGGTAGATAGGGTAGGTGGGT..................................................... 21 0 5 0.20 1 1 0 0 0 0 0
...................................................................................CTCGAGTCTCTTGATCAACC.................................................................................................................................................... 20 2 5 0.20 1 0 0 1 0 0 0
........................................................................................................................................................................................TAGGGCAGGTGCGAATCGATGGG............................................ 23 3 5 0.20 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGTAGGTCGATAAGGTAAGT......................................................... 22 3 5 0.20 1 0 0 1 0 0 0
...........................................................................................................................................................................AGAGGTTGGTAGATAAGGAAGGT......................................................... 23 3 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTCGGTAGAAATGGTAGGT......................................................... 22 3 5 0.20 1 0 0 1 0 0 0
..........................................................................................................................................................................................GGGCAGGTGGGAATCGATG.............................................. 19 2 5 0.20 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGCAGGTAGATATGGAAGGT......................................................... 22 3 5 0.20 1 0 0 0 0 1 0
...........................................................................................................................................................................CGAGGTAGGTAGATATGGTAGGT......................................................... 23 2 5 0.20 1 0 0 1 0 0 0
.......................................................................................................................................................................................ATAGTGTAGGTATGTATCGATGG............................................. 23 3 5 0.20 1 0 1 0 0 0 0
........................................................................................................................................................................................TAGGGTAGGTGTGAATCGATGGG............................................ 23 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................ATAGGGCAGGTGGGAATCGA................................................ 20 2 5 0.20 1 0 0 1 0 0 0
...............................................................................................................................................................CCGTGAGTAGGTAGAGGTAGGTAGAT.................................................................. 26 0 5 0.20 1 1 0 0 0 0 0
................................................................................................................................................................................................GTGGGTATCGATGGGGCAACTT..................................... 22 0 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................................GAGGTACGAAGATAGGGAAGGT......................................................... 22 3 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................................................................GTGTGACTCGACGTCAGCATG.......... 21 1 5 0.20 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATAACGTAGGT......................................................... 22 2 5 0.20 1 0 0 1 0 0 0
.......................................................................................................................................................................................ATAGGGAAGGTGTGTACCGATG.............................................. 22 3 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................................................................AGAGCTAGGTAGATAAGGTAGGT......................................................... 23 2 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATAAGGTAAGT......................................................... 22 2 5 0.20 1 0 0 1 0 0 0
...........................................................................................................................................................................AGAGCTAGGTAGATAACGTAGGT......................................................... 23 3 5 0.20 1 0 0 1 0 0 0
.......................................................................................................................................................................................ATAGGGCAGGTGAGAATCGAT............................................... 21 3 5 0.20 1 0 1 0 0 0 0
.....................................................................................................................................................................................AGATAGGGTAGGTGGGTATC.................................................. 20 0 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................................AGGTAGGTAGATATGGTAGGT......................................................... 21 1 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATAAGGAAGGT......................................................... 22 2 5 0.20 1 0 0 1 0 0 0
..........................................................................................................................................................................TTGAGGTAGGTAGATAAGTTAGGT......................................................... 24 3 5 0.20 1 0 0 1 0 0 0
.......................................................................................................................................................................................ATAGAGTAGGTCTGTATCGATGGG............................................ 24 3 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATAAGGTAGAT......................................................... 22 2 6 0.17 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTAGATAACGTAGGT......................................................... 21 2 6 0.17 1 0 0 1 0 0 0
...........................................................................................................................................................................AGAGGTAGGTAGATATGTTAGGT......................................................... 23 2 6 0.17 1 0 0 1 0 0 0
..........................................................................................................................................................................................GGGTAGGTATGTATCGATGG............................................. 20 2 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................................................ATAGAGTAGGTAGGTATCGAT............................................... 21 2 6 0.17 1 0 1 0 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATAAGTTAGGT......................................................... 22 2 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGAAGATAGGGTTGCT......................................................... 22 3 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTGTGTAGATATGGTAGGT......................................................... 22 3 6 0.17 1 0 0 0 0 0 1
........................................................................................................................................................................................TAGGGCAGGTGTGCATCGATG.............................................. 21 3 6 0.17 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGAAGGTAGATATGGTAAGT......................................................... 22 3 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATATGTTAGGT......................................................... 22 2 6 0.17 1 0 0 0 0 1 0
.........................................................................................................................................................................................AGGGCAGGGGGGAATCGATGGG............................................ 22 3 6 0.17 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGTAGGAAGATATGGGAGGT......................................................... 22 3 6 0.17 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTAGAAATGGTAGGT......................................................... 21 2 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTATGTAGATAAGGTTGGT......................................................... 22 3 6 0.17 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTATGTAGATATGTTAGGT......................................................... 22 3 12 0.17 2 0 0 1 0 0 1
............................................................................................................................................................................GAGCTAGGTAGATAAGGAAGGT......................................................... 22 3 7 0.14 1 0 0 1 0 0 0
.................................................................................................................................................................................AGGTAGGTAGGGTAGGTGGGT..................................................... 21 1 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................................................................GGTAGGTGTGAATCGATGG............................................. 19 2 7 0.14 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTATGAAGATAGGGAAGGT......................................................... 22 3 7 0.14 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTATGAAGATAGGTTAGGT......................................................... 22 3 7 0.14 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTCGATAAGGTAGGT......................................................... 21 2 7 0.14 1 0 0 1 0 0 0
...........................................................................................................................................................................AGAGGTAGGTAGATAAGGTAAAT......................................................... 23 3 7 0.14 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTCGATATGGAAGGT......................................................... 22 3 7 0.14 1 0 0 1 0 0 0
.........................................................................................................................................................................................AGGGAAGGTGTGAATCGATGG............................................. 21 3 7 0.14 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGTAGGCAGATAAGGCAGGT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGATATCGTAGAT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTATGTAGAAAGGGAAGGT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
............................................................................................................................................................................GAGCTAGGTAGATAAGGTAAGT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
..........................................................................................................................................................................................GGGCAGGTGTGCATCGATGGG............................................ 21 3 8 0.13 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTATGTAGATAAGGTAAGT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
..........................................................................................................................................................................................GGGCAGGTTGGAATCGATGG............................................. 20 3 8 0.13 1 0 0 1 0 0 0
............................................................................................................................................................................GAGCTAGGTAGATATCGTAGGT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
............................................................................................................................................................................GCGCTAGGTAGATAAGGTAGGT......................................................... 22 3 8 0.13 1 0 0 0 0 1 0
............................................................................................................................................................................GAGGTATGTAGAAATGGTAGGT......................................................... 22 3 8 0.13 1 0 0 1 0 0 0
................................................................................................................................................................................................GTGTGTATCGATGGGGCG......................................... 18 2 9 0.11 1 0 0 1 0 0 0
............................................................................................................................................................................CAGCTAGGTAGATAAGGTAGGT......................................................... 22 3 9 0.11 1 0 0 1 0 0 0
.......................................................................................................................................................................................ATAGAGTAGGTATGTATCGA................................................ 20 3 18 0.11 2 0 1 0 1 0 0
...........................................................................................................................................................................................GGCAGGTGAGAATCGATGGG............................................ 20 3 9 0.11 1 1 0 0 0 0 0
............................................................................................................................................................................GAGGTATGTAGAAAGGTTAGGT......................................................... 22 3 9 0.11 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTAGATATGTTAGGT......................................................... 21 2 9 0.11 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGAAAAGTTAGGT......................................................... 22 3 10 0.10 1 0 0 1 0 0 0
.........................................................................................................................................................................................TGGGCAGGTGGGAATCGATG.............................................. 20 3 10 0.10 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGCAGAAAGGGAAGGT......................................................... 22 3 10 0.10 1 0 0 1 0 0 0
..........................................................................................................................................................................................GGGCAGGTGTGGATCGATGGG............................................ 21 3 10 0.10 1 1 0 0 0 0 0
.......................................................................................................................................................................................ATAGAGTAGGTATGTATCGAT............................................... 21 3 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................................................................AGGTTGGTCGATATGGTAGGT......................................................... 21 3 11 0.09 1 0 0 1 0 0 0
.............................................................................................................................................................................AGCTAGGTCGATAAGGTAGGT......................................................... 21 3 11 0.09 1 0 0 1 0 0 0
............................................................................................................................................................................GAGGTAGGTAGAAAAGGAAGGT......................................................... 22 3 13 0.08 1 0 0 1 0 0 0
...........................................................................................................................................................................................GGCAGGTGCGAATCGATGG............................................. 19 3 13 0.08 1 1 0 0 0 0 0
.............................................................................................................................................................................AGGTAGGGAGAAAGGATAGGT......................................................... 21 3 14 0.07 1 0 0 1 0 0 0
............................................................................................................................................................................................GCAGGTGTGGATCGATGGG............................................ 19 3 14 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................AGGTAGGAAGAAAGGTTAGGT......................................................... 21 3 14 0.07 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGAAGGTAGATAAGGTAGAT......................................................... 21 3 16 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................................CAGGTGTGTATCGATGGGC........................................... 19 3 16 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTATGTAGAAAAGGTAGGT......................................................... 21 3 17 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTAGAAATGGAAGGT......................................................... 21 3 17 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................TGGTAGGAAGATAGGTTAGGT......................................................... 21 3 17 0.06 1 0 0 0 0 0 1
...........................................................................................................................................................................................GGTAGGTATGTATCGATG.............................................. 18 2 20 0.05 1 0 0 0 1 0 0
.............................................................................................................................................................................AGGTATGTAGATATGTTAGGT......................................................... 21 3 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTAGATAAGGAAAGT......................................................... 21 3 20 0.05 1 0 0 1 0 0 0
..GGTTGGGGTGGGATGTTG....................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0
.....TGGGGTCGGGTCTTGCGG.................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................AGGTAGGTCGATATGTTAGGT......................................................... 21 3 20 0.05 1 0 0 1 0 0 0
..GGGTGGGGTGGGGTGTTGT...................................................................................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_88:178090-178340 - dpe_2133 ACCCCACCCCACCCCACAACGCCATGT---TGCGCATAATCCTATTTG---GGTGGCTGTTGGCCGGCCCGGC------ACTCCTGGTCCACTCGGAGCTCACAGAACTA---------------GATGGCCCCAACATATGCAAGAGGCGGGAGAGGTAAGTAC---------TCGTCG-----------GAGAGACTAATCACAGGCA----------CTC---------ATCCATC----------T--CCA-----TCCATCTATC----CCATCC--ACCCATAGCTACCCCGTTGAAGTTGTCTACACTGAGCTGCAGTCGTACCAGGAGCGTG
dp5 XR_group6:13155213-13155463 + ACCCCACCCCACCCCACAACGCCATGT---TGTGCATAATCCTATTTG---GGTGGCTGTTGGCCGGCCCGGC------ACTCCTGGTCCACTCGGAGCTCACAGAACTA---------------GATGGCCCCAACATATGCAAGAGGCGGGAGAGGTAAGTAC---------TCATCG-----------GAGAGACTAATCACAGGCA----------CTC---------ATCCATC----------T--CCA-----TCCATCTATC----CCATCC--ACCCATAGCTACCCCGTTGAAGTTGTCTACACTGAGCTGCAGTCGTACCAGGAGCGTG
droWil2 scf2_1100000004511:942231-942381 - -------------------------------------------------------------------------------------------------------AGATTTA---------------GATGGACCCAATATATGCAAAAGGCGTGAAACGTAAGTTG-----------GAG---------------AAACACGTT------CTCTAAATGAACTT-----GCTAATGAATA--------------------------------TTTTTATCG--ATTCATAGTTATACCGTTGAGGTAGTTACGACTGAACTGCAACCTTATCAGCAGCGTG
droVir3 scaffold_13049:2353879-2354078 - dvi_18055 C-----------------------------------------------------------------------------------TGGCGCAGGCGGAGATCACGGAGCTGACCAATGATGCGCCCGAAGGACCCAATGTGTGCAAAAAGCGCGAAAAGTATGTAG-----------C--AT--GAA-------GA----------------------GGAGGGAGAGGGGCATGGGGCATGTGGAGCTTAATAACATGTTTG---------CTT----TTGTCCCCGCAGCTACAACGTCGAGGTGGTCATCACGGAGCTGCAGTCGTTCCAGGAGCGCG
droMoj3 scaffold_6654:1515413-1515610 + C-----------------------------------------------------------------------------------TGGCTCAGTCTGAGATCATTGAGCTGAACAGTGAGGCGCCTGAAGGACCCAACGTATGCAAGAAGCGCGAAAAGTAAGTGC---------C-ACGCC--CTGCCCCAGAGAGA-----CACAGAGA----------TTC---------ATTGACG----------T--ATT-----TCAAC-TTCT----ACTTCC-ACTCGCTAGCTACGATGTGGAGGTGGTCGTCACGGAGCTGCAGTCGTTCCAGGAGCGCG
droGri2 scaffold_15110:3384537-3384773 - C--------------A--AATTCATGT---TGCGACTAAGCTGGATTG---GA---TTG---GGACTGCTAGCATTGCTGGCGAATGCTCAGGACGAGATCACGG------CCATTGAAGGACCCGAGGGACCCAATGTCTGCAAAAAGCGTGAAAAGTAAGCAA-----------CGAA--------------TGAGCCATGAAGAGCA----------TTA---------AGTGTTC----------G--ATA-----TTCATTTTG---TT----TT-ACTTTGCAGCTATAATGTGGAGGTTGTCATCACGGAGCTGCAGTCGTTCCAAGAGCGCG
droAna3 scaffold_13337:1115536-1115701 + ------------------------------------------------------------------------------------TGGCTCAGGCGGAGCTGCGGAAACTG---------------GATGGGCCCAATATCTGCAACAAGCGAGAAAAGTGAGTCT-----------GAA---------------ATACCAGTTG------C-GACTGTGACTA----AACCCGTATTTC--------------------------------AAT----TT--GACCATAGCTATCCTGTGGAGGTGGTTTACACGGAGCTGCAGTCCTACCAGGAGCGCG
droBip1 scf7180000396371:1447628-1447851 + C--------------ACACTGCCATGTTGATGCGGTTAATCCTTATCG---CCTGCCTA---GTCCAGC---------TGGCTGTGGCTCAGGCAGAGCTGCGGAAACTA---------------GATGGTCCCAATATCTGCAACAAGCGGGAAAAGTGAGTTT-----------CAA---------------ATA------ATAGTTA----------TTA---------CTCTGAC----------T--AAA-----ATGTTTTATT----TAATTTGACCATTTAGCTACCCCGTGGAGGTGGTATATACGGAGTTGCAATCCTACCAGGAGCGTG
droKik1 scf7180000302577:204827-205048 - C--------------A-----TCATGT---TTCGGCTGATCCTCCTTG---CCTGCCTG---GCCCAGC---------TGGCCCTGGCTCAGGCGGATCTCAAGGATCTG---------------GATGGACCCAATATCTGTAAAAGGCGGGAAACGTAAGTTACAAGTGTTCTTATCT-----------AAAAAA-------------------T-----------------------GTAGTACTTACTTAAATGAAAAC-------ACTC----TT--AATTCTAGGTATCCCGTGGAAGTAGTCTATACGGAACTGCAATCATACCAGGAGCGTG
droFic1 scf7180000454113:352264-352475 + C--------------A-----TTATGT---TGCGACTGATCCTCATGG---CCTGCCTG---GCCCAGT---------TGGCCTTGGCGCAGGCGGAGCTTAAGGACTTG---------------GATGGACCCAATGTCTGTAAAAGGAGAGAAAAGTAAGCTT-----------CCCCT--TAGAGGTT-------------------A-CTAAGTAA-TG-----ACTAACAAGTA-------------------------------CCCC----TT--GGCATTAGCTATCCCGTGGAAGTTGTCTTCACGGAACTGCAATCGTACCAAGTACGCG
droEle1 scf7180000491249:3835368-3835583 + C--------------A-----TTATGT---TGCGGCTTATCCTCATCG---CCTGCCTG---GCCCAAA---------TGGCCCTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGTAAAAGAAGAGAAACGTAAGTGC---------TTAGCT---GTA--A---ACAATCGAATTAAA----------TGAATTTA---GATTACCGAGTA--------------------------------AT----------CTTTAAGGTACCCCGTCGAAGTTGTCTACACAGAACTGCAATCTTATCAGGAGCGCA
droRho1 scf7180000776850:212842-213059 + C--------------A-----TCATGT---TGAGGCTGATCCTTATCG---CCTGCCTG---GCCCAGC---------TGGCTTATTCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGTAAAAAAAGAGAAACGTAGGCAT-----------ATCTTTGAACTTCCT-------------------G-TAAAGGTATCAA---GTTAAATGAGTA-----------------------A-------CCCC----TT--ACTTTTAGATATCCCGTGGAAGTTGTCTACACAGAATTGGCATCTTTCCAGGACCGCG
droBia1 scf7180000302428:8415347-8415570 - C--------------A--TCATCATGT---TCCGATTGATTCTAATCG---CCTGCCTG---GTCCAGC---------TGGCTCTGGCCCAGGCGGATCTTAAAGATCTG---------------GATGGACCTAATATCTGTAAAAGGAGAGAAACGTAAGCTT-----------GGCCT--TGGTTA------AA-----CCCA----G-CAAATGAACGAT---GTTTAAGGAGTA--------------------------------AC-TTATGT--ACCCCTAGGTATCCCGTGGAAGTGGTCTACACAGAGCTGCAATCCTATCAAGAACGCG
droTak1 scf7180000415095:34920-35139 + C--------------A-----TCATGT---TGCGTTTAATCCTCGTCG---CCTGTTTG---GTCCAGC---------TGGCTCTGGCCCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGTAAAAGAAGGGAAACGTAAGATT-----------AGCCT--GGA-------AA-------TAAA----A-CAATTTTACTAAGATTAGTAATGAGCT-----------------------T-------TACT----AT--ACCCTTAGGTATCCCGTGGAGGTGGTCTACACAGAACTGCAATCCTATCAGGAACGGG
droEug1 scf7180000407756:43559-43775 - ---------------A-----TCATGT---TTCGGTTGATCCTCATCG---CCAGCCTG---GCTCAGC---------TAATCTTAGCGCAGGCAGATCTAAAAGATCTG---------------GATGGACCTAATATATGTAAAA-AAGAGAAACGTAAGCGT-----------AGTCT--ATATAGCA---------ATCA---------AAATGGTCAGCTACTATTAATAAATT--------------------------------AAT----GA--ACCTTTAGGTATCCTGTGGAAGTTGTCTTCACAGAACTGCAATCTTACCAAGAACGCG
dm3 chr3L:1723884-1724096 - C--------------A-----CCATGT---TGCCGGTAATCCTCATAG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGCAAAAGAAGAGAACTGTAAGCTT-----------ATCCC--CTATCACG-------------------A-CAAATGAACTA----AATTAATGAATA--------------------------------CTT----TT--ACCTTTAGATATAACGTAGACGTTGTCTACACAGAACTGCAATCGTTCCAGGAACGGG
droSim2 3l:1633709-1633921 - C--------------A-----CCATGT---TGCGGGTAATCCTCATGG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAACATCTGCAAAAGAAGAGAACTGTAAGCTT-----------ATCCC--CTGTCACG-------------------A-CAAATGAACTA----AATTAATAGATA--------------------------------CTT----TT--ACCTTTAGGTATAACGTAGACGTGGTCTACACAGAACTGCAATCGTTCCAGGAACGGG
droSec2 scaffold_2:1750257-1750469 - C--------------A-----CCATGT---TGCGGGTAATCCTCATGG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATTTGCAAAAGAAGAGAACTGTAAGCTT-----------ATCCC--CTGTCACG-------------------A-CAAATGAACTA----AATTAATGGATA--------------------------------CTT----TT--GCCTTTAGGTATAACGTAGACGTTGTCTACACAGAACTGCAATCGTTCCAGGAACGGG
droYak3 3L:1675914-1676126 - C--------------A-----CCATGT---TGCGGGTTATCCTCATCG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGCAAAAGGAGAGAACTGTAAGCTG-----------GTCCC--TGATCACG-------------------A-CAAATCAACTA----AACTAATGAGTA--------------------------------CTT----CT--ACCTTTAGGTATAACGTAGACGTTGTCTACACAGAACTGCAATCGTACCAGGAGCGCG
droEre2 scaffold_4784:1706978-1707193 - C--------------A-----CAATGT---TGCGGATAATCCTAATCGCCGCCTGCCTA---GGCCAGC---------TGGTCCTGGCTCAGGCGGATCTTAAAGATCTC---------------GTTGGACCCAATATCTGCAAAAGAAGAGAAGTGTAAGCTC-----------GTTTC--TTATCCCA-------------------A-CAAACTAACTT----ATTTAATGAGTC--------------------------------ATT----TT--ACCTTTAGATATAACGTAGAGGTTGTCTACACGGAACTGCAATCCTACCAGGAACGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACCCCACCCCACCCCACAACGCCATGT---TGCGCATAATCCTATTTG---GGTGGCTGTTGGCCGGCCCGGC------ACTCCTGGTCCACTCGGAGCTCACAGAACTA---------------GATGGCCCCAACATATGCAAGAGGCGGGAGAGGTAAGTAC---------TCGTCG-----------GAGAGACTAATCACAGGCA----------CTC---------ATCCATC----------T--CCA-----TCCATCTATC----CCATCC--ACCCATAGCTACCCCGTTGAAGTTGTCTACACTGAGCTGCAGTCGTACCAGGAGCGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................TCACAGAACTA---------------GATGGCCCCAA............................................................................................................................................................................................................2240.502200000
...................................ATAATCCTATTTG---GGTGGCTGTT.......................................................................................................................................................................................................................................................................................2340.502110000
.............................................................................................................................................................................................................................................................................................................................GCTGCAGTCGTACCAGGAGC...2050.402200000
...................................................................................................................................CCCAACATATGCAAGAGGCGGGA..........................................................................................................................................................................................2340.251010000
.......................................................................................................AGAACTA---------------GATGGCCCCAAC...........................................................................................................................................................................................................1940.251010000
..................................................................................................................................CCCCAACATATGCAAGAGGCGGGAG.........................................................................................................................................................................................2540.251010000
....................................................................................................CACAGAACTA---------------GATGGCCC...............................................................................................................................................................................................................1840.251010000
........................................................................................................................................CATATGCAAGAGGCGGGA..........................................................................................................................................................................................1840.251010000
......................................ATCCTATTTG---GGTGGCTGTT.......................................................................................................................................................................................................................................................................................2040.251010000
......................................................................................................................................AACATATGCAAGAGGCGGG...........................................................................................................................................................................................1940.251000010
....................................................................................................CACAGAACTA---------------GATGGCCCCAA............................................................................................................................................................................................................2140.251100000
...........................................ATTTG---GGTGGCTGTTGGCCG..................................................................................................................................................................................................................................................................................2040.251010000
..........................................................................................ACTCGGAGCTCACAGAACTA---------------GATGGCCCC..............................................................................................................................................................................................................2940.251100000
....................................................................................................CACAGAACTA---------------GATGGCCCCAAC...........................................................................................................................................................................................................2240.251000001
.........................GT---TGCGCATAATCCTATTTG---GGTGGCT..........................................................................................................................................................................................................................................................................................2740.251010000
....................................................................................................................................................................................................................................................................................................................CTACACTGAGCTGCAGTCGTA...........2150.201000001
............................................................................................................................................................................................................................................................................................................GAAGTTGTCTACACTGAGC.....................1950.201000001
....................................................................................................................................................................................................................................................................................................................CTACACTGAGCTGCAGTCGT............2050.201010000
..................................................................................................................................................................................................................................................................................................CTACCCCGTTGAAGTTGTCTACACTGA.......................2750.201010000
...........................................................................................................................................................................................................................................................................................................................GAGCTGCAGTCGTACCAGG......1950.201010000
dp5
ACCCCACCCCACCCCACAACGCCATGT---TGTGCATAATCCTATTTG---GGTGGCTGTTGGCCGGCCCGGC------ACTCCTGGTCCACTCGGAGCTCACAGAACTA---------------GATGGCCCCAACATATGCAAGAGGCGGGAGAGGTAAGTAC---------TCATCG-----------GAGAGACTAATCACAGGCA----------CTC---------ATCCATC----------T--CCA-----TCCATCTATC----CCATCC--ACCCATAGCTACCCCGTTGAAGTTGTCTACACTGAGCTGCAGTCGTACCAGGAGCGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................CACAGAACTA---------------GATGGCCCCAAC...........................................................................................................................................................................................................2213.0030300000000
...........................................................................................................................................................................................................................................................................................................................GAGCTGCAGTCGTACCAGG......1912.0020200000000
........................................................................................................................................CATATGCAAGAGGCGGGAGA........................................................................................................................................................................................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................CTACACTGAGCTGCAGTCGTACCA........2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................GCTGCAGTCGTACCAGGAGCGTG2311.0010100000000
..............................................................................................................................................................................................................................................................................................................AGTTGTCTACACTGAGCTGCAGT...............2311.0010100000000
........................................................................................CCACTCGGAGCTCACAGAACTA---------------.......................................................................................................................................................................................................................2211.0010100000000
......................................................................GGC------ACTCCTGGTCCACTCGG....................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................TACACTGAGCTGCAGTCGTACCAG.......2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................TACACTGAGCTGCAGTCGTACC.........2211.0010000001000
...........................................................................................................................................................................................................................................................................................................................GAGCTGCAGTCGTACCAGGAGCGTG2511.0010100000000
.........................................................................................................................................ATATGCAAGAGGCGGGAGA........................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................TGTCTACACTGAGCTGCAGTC..............2111.0010100000000
.......................................TCCTATTTG---GGTGGCTGTT.......................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................GGTCCACTCGGAGCTCACAGAACTA---------------G......................................................................................................................................................................................................................2611.0010100000000
..................................................................................................CTCACAGAACTA---------------GATGGCCCCAAC...........................................................................................................................................................................................................2411.0010100000000
.................................GCATAATCCTATTTG---GGTGGCTGTT.......................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................................CACAGAACTA---------------GATGGCCCCAA............................................................................................................................................................................................................2111.0010100000000
................................................................................................................................GGCCCCAACATATGCAAGAGGCGG............................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................CTACACTGAGCTGCAGTCGTACCAGG......2611.0010100000000
............................................................................................................................................................................................................................................................................................................................AGCTGCAGTCGTACCAGGA.....1911.0010100000000
.............................................................GGCCGGCCCGGC------ACTCCTGGTCC..........................................................................................................................................................................................................................................................2311.0010100000000
......................................................................................GTCCACTCGGAGCTCACAGAA.........................................................................................................................................................................................................................................2111.0010100000000
......................................................GGCTGTTGGCCGGCCCGGC------ACTCCTG..............................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................CACAGAACTA---------------GATGGCCCCA.............................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................CTGCAGTCGTACCAGGAGCGTG2211.0010000010000
......................................................................................................................................................................................................................................................................................................CCCGTTGAAGTTGTCTACACT.........................2111.0010100000000
................................................................................................................................GGCCCCAACATATGCAAGAGGC..............................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................GAGCTGCAGTCGTACCAGGAGC...2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................CACTGAGCTGCAGTCGTACCAGG......2311.0010100000000
..............................................................................................GGAGCTCACAGAACTA---------------GATG...................................................................................................................................................................................................................2011.0010000100000
......................................................................GGC------ACTCCTGGTCCACTCG.....................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................TACCCCGTTGAAGTTGTCTACACTGAGC.....................2811.0010100000000
......................................................................................................................................AACATATGCAAGAGGCGGGAGA........................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................................................................................................................CTACACTGAGCTGCAGTCG.............1911.0010100000000
.........................................................................................................AACTA---------------GATGGCCCCAACA..........................................................................................................................................................................................................1811.0010100000000
................................................................................................AGCTCACAGAACTA---------------GATGGCCCCAAC...........................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................TACACTGAGCTGCAGTCGT............1911.0010100000000
.........................................................TGTTGGCCGGCCCGGC------ACTCCTG..............................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................ACTCGGAGCTCACAGAACTA---------------GATG...................................................................................................................................................................................................................2411.0010100000000
droWil2
-------------------------------------------------------------------------------------------------------AGATTTA---------------GATGGACCCAATATATGCAAAAGGCGTGAAACGTAAGTTG-----------GAG---------------AAACACGTT------CTCTAAATGAACTT-----GCTAATGAATA--------------------------------TTTTTATCG--ATTCATAGTTATACCGTTGAGGTAGTTACGACTGAACTGCAACCTTATCAGCAGCGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................ATGGACCCAATATATGCAAAAGGCGT............................................................................................................................................................................................2611.00101000
...................................................................................................................................................................................................................................................................................................................TTACGACTGAACTGCAACCT.............2011.00110000
................................................................................................................................................................................................................................................................................................................................GCAACCTTATCAGCAGCGT.1911.00100100
........................................................................................................................................................................................................................................................................................................CGTTGAGGTAGTTACGACTG........................2011.00100100
....................................................................................................................................................................................................................................................................................................................TACGACTGAACTGCAACC..............1811.00110000
droVir3
C-----------------------------------------------------------------------------------TGGCGCAGGCGGAGATCACGGAGCTGACCAATGATGCGCCCGAAGGACCCAATGTGTGCAAAAAGCGCGAAAAGTATGTAG-----------C--AT--GAA-------GA----------------------GGAGGGAGAGGGGCATGGGGCATGTGGAGCTTAATAACATGTTTG---------CTT----TTGTCCCCGCAGCTACAACGTCGAGGTGGTCATCACGGAGCTGCAGTCGTTCCAGGAGCGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................TGCAGTCGTTCCAGGAGCGC.2015.005200001010000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................GA----------------------GGAGGGAGAGGGGCATGGGG.......................................................................................................2215.005000001000100000000000000000001000000000000000000000000000000020
.................................................................................................................................................................................................GA----------------------GGAGGGAGAGGGGCATGGGGC......................................................................................................2314.004000000001100000000000000001000000000000000000000000000000000010
...............................................................................................GAGATCACGGAGCTGACCAATGATG............................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000002000
.............................................................................................................................................................................................................................................................................................................................GCTGCAGTCGTTCCAGGAGCGC.2212.002001000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................TGCAGTCGTTCCAGGAGCG..1912.002000000000200000000000000000000000000000000000000000000000000000
....................................................................................................CACGGAGCTGACCAATGATGCGCC........................................................................................................................................................................................................................2412.002100000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GGTCATCACGGAGCTGCAGT...............2012.002000000000000000000000000000000000000100100000000000000000000000
.............................................................................................................GACCAATGATGCGCCCGAAG...................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................A-------GA----------------------GGAGGGAGAGGGGCATGGGC.......................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................ATGATGCGCCCGAAGGACCC..............................................................................................................................................................................................................2011.001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................GGAGATCACGGAGCTGACC...................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGGAGCTGCAGTCGTTC..........1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCACGGAGCTGACCAATGATGCGC.........................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACGTCGAGGTGGTCATCACGGA.......................2211.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................CAATGATGCGCCCGAAGGACC...............................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ATCACGGAGCTGCAGTCGTTCCAG.......2411.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................TGATGCGCCCGAAGGACCCAA............................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................GGCGCAGGCGGAGATCACGGAGCG.......................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGACCAATGATGCGCCCGAAG...................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................CACGGAGCTGACCAATGATGCGC.........................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CGAGGTGGTCATCACGGA.......................1811.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................GCAGGCGGAGATCACGGAGC........................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AGGTGGTCATCACGGAGCT....................1911.001000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................GA----------------------GGAGGGAGAGGGGCATGGGGA......................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................GATGCGCCCGAAGGAC................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................CGCCCGAAGGACCCAATGTGTGCAAAAA................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................A-------GA----------------------GGAGGGAGAGGGGCATGGGGC......................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCAGTCGTTCCAGGAGCGC.1911.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ATGTGGAGCTTAATAACA....................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AGGTGGTCATCACGGAGCTGCAGTCGT............2711.001000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................ACGGAGCTGACCAATGATGCGC.........................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................AGCTGACCAATGATGCGCC........................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................GA----------------------GGAGGGAGAGGGGCATGGGGT......................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................GATGCGCCCGAAGGACCCAATGTGT.......................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................ACCAATGATGCGCCCGAAGG..................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
C-----------------------------------------------------------------------------------TGGCTCAGTCTGAGATCATTGAGCTGAACAGTGAGGCGCCTGAAGGACCCAACGTATGCAAGAAGCGCGAAAAGTAAGTGC---------C-ACGCC--CTGCCCCAGAGAGA-----CACAGAGA----------TTC---------ATTGACG----------T--ATT-----TCAAC-TTCT----ACTTCC-ACTCGCTAGCTACGATGTGGAGGTGGTCGTCACGGAGCTGCAGTCGTTCCAGGAGCGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................AGTCTGAGATCATTGAGCTGAACA..................................................................................................................................................................................................................................2411.001001000
.............................................................................................................................................................................................................................................................................................................................GCTGCAGTCGTTCCAGGAGCGC.2211.001000001
..........................................................................................AGTCTGAGATCATTGAGCTGAA....................................................................................................................................................................................................................................2211.001000001
..................................................................................................................GTGAGGCGCCTGAAGGACC...............................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................TGTGGAGGTGGTCGTCACGGAG......................2211.001000001
......................................................................................................................................................................................................................................................................................................GATGTGGAGGTGGTCGTCACGGAGCT....................2611.001000001
..............................................................................................................................................................................................................................................................................................................................CTGCAGTCGTTCCAGGAGCGC.2111.001100000
.........................................................................................................................................................................................................................................................................................................GTGGAGGTGGTCGTCACGGAGC.....................2211.001000001
droGri2
C--------------A--AATTCATGT---TGCGACTAAGCTGGATTG---GA---TTG---GGACTGCTAGCATTGCTGGCGAATGCTCAGGACGAGATCACGG------CCATTGAAGGACCCGAGGGACCCAATGTCTGCAAAAAGCGTGAAAAGTAAGCAA-----------CGAA--------------TGAGCCATGAAGAGCA----------TTA---------AGTGTTC----------G--ATA-----TTCATTTTG---TT----TT-ACTTTGCAGCTATAATGTGGAGGTTGTCATCACGGAGCTGCAGTCGTTCCAAGAGCGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................ATCACGGAGCTGCAGTCGTTCC.........2211.00110
.............................................................................................................................................................................................................................................................................................................................GCTGCAGTCGTTCCAAGAGCGC.2211.00101
.................................................................................................................ATTGAAGGACCCGAGGGACCCAATGTCT.......................................................................................................................................................................................................2811.00110
.........................GT---TGCGACTAAGCTGGATTG---GA---TTG---......................................................................................................................................................................................................................................................................................2511.00101
droAna3
------------------------------------------------------------------------------------TGGCTCAGGCGGAGCTGCGGAAACTG---------------GATGGGCCCAATATCTGCAACAAGCGAGAAAAGTGAGTCT-----------GAA---------------ATACCAGTTG------C-GACTGTGACTA----AACCCGTATTTC--------------------------------AAT----TT--GACCATAGCTATCCTGTGGAGGTGGTTTACACGGAGCTGCAGTCCTACCAGGAGCGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................AGCTGCGGAAACTG---------------GATGGGCCC..............................................................................................................................................................................................................2312.002000002
......................................................................................................................................................................................................................................................................................................................ACACGGAGCTGCAGTCCTACC.........2112.002010010
......................................................................................GCTCAGGCGGAGCTGCGGAAACTG---------------GATG...................................................................................................................................................................................................................2811.001000010
.............................................................................................................................................................................................................................................................................................................................GCTGCAGTCCTACCAGGAGCGC.2211.001000001
....................................................................................................................................................................................................................................................................................................................TTACACGGAGCTGCAGTCCTAC..........2211.001000010
............................................................................................................................................................................................................................................................................................................GAGGTGGTTTACACGGAGCTGCA.................2311.001000010
...........................................................................................................................................................................................................................................................................................................GGAGGTGGTTTACACGGAGCTGCA.................2411.001000010
......................................................................................................................................................................................................................................................................................................................ACACGGAGCTGCAGTCCTAC..........2011.001000010
droBip1
C--------------ACACTGCCATGTTGATGCGGTTAATCCTTATCG---CCTGCCTA---GTCCAGC---------TGGCTGTGGCTCAGGCAGAGCTGCGGAAACTA---------------GATGGTCCCAATATCTGCAACAAGCGGGAAAAGTGAGTTT-----------CAA---------------ATA------ATAGTTA----------TTA---------CTCTGAC----------T--AAA-----ATGTTTTATT----TAATTTGACCATTTAGCTACCCCGTGGAGGTGGTATATACGGAGTTGCAATCCTACCAGGAGCGTGSizeHit CountTotal NormTotal
No Reads
droKik1
C--------------A-----TCATGT---TTCGGCTGATCCTCCTTG---CCTGCCTG---GCCCAGC---------TGGCCCTGGCTCAGGCGGATCTCAAGGATCTG---------------GATGGACCCAATATCTGTAAAAGGCGGGAAACGTAAGTTACAAGTGTTCTTATCT-----------AAAAAA-------------------T-----------------------GTAGTACTTACTTAAATGAAAAC-------ACTC----TT--AATTCTAGGTATCCCGTGGAAGTAGTCTATACGGAACTGCAATCATACCAGGAGCGTGSizeHit CountTotal NormTotal
No Reads
droFic1
C--------------A-----TTATGT---TGCGACTGATCCTCATGG---CCTGCCTG---GCCCAGT---------TGGCCTTGGCGCAGGCGGAGCTTAAGGACTTG---------------GATGGACCCAATGTCTGTAAAAGGAGAGAAAAGTAAGCTT-----------CCCCT--TAGAGGTT-------------------A-CTAAGTAA-TG-----ACTAACAAGTA-------------------------------CCCC----TT--GGCATTAGCTATCCCGTGGAAGTTGTCTTCACGGAACTGCAATCGTACCAAGTACGCGSizeHit CountTotal NormTotal
No Reads
droEle1
C--------------A-----TTATGT---TGCGGCTTATCCTCATCG---CCTGCCTG---GCCCAAA---------TGGCCCTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGTAAAAGAAGAGAAACGTAAGTGC---------TTAGCT---GTA--A---ACAATCGAATTAAA----------TGAATTTA---GATTACCGAGTA--------------------------------AT----------CTTTAAGGTACCCCGTCGAAGTTGTCTACACAGAACTGCAATCTTATCAGGAGCGCASizeHit CountTotal NormTotal
No Reads
droRho1
C--------------A-----TCATGT---TGAGGCTGATCCTTATCG---CCTGCCTG---GCCCAGC---------TGGCTTATTCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGTAAAAAAAGAGAAACGTAGGCAT-----------ATCTTTGAACTTCCT-------------------G-TAAAGGTATCAA---GTTAAATGAGTA-----------------------A-------CCCC----TT--ACTTTTAGATATCCCGTGGAAGTTGTCTACACAGAATTGGCATCTTTCCAGGACCGCGSizeHit CountTotal NormTotal
No Reads
droBia1
C--------------A--TCATCATGT---TCCGATTGATTCTAATCG---CCTGCCTG---GTCCAGC---------TGGCTCTGGCCCAGGCGGATCTTAAAGATCTG---------------GATGGACCTAATATCTGTAAAAGGAGAGAAACGTAAGCTT-----------GGCCT--TGGTTA------AA-----CCCA----G-CAAATGAACGAT---GTTTAAGGAGTA--------------------------------AC-TTATGT--ACCCCTAGGTATCCCGTGGAAGTGGTCTACACAGAGCTGCAATCCTATCAAGAACGCGSizeHit CountTotal NormTotal
No Reads
droTak1
C--------------A-----TCATGT---TGCGTTTAATCCTCGTCG---CCTGTTTG---GTCCAGC---------TGGCTCTGGCCCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGTAAAAGAAGGGAAACGTAAGATT-----------AGCCT--GGA-------AA-------TAAA----A-CAATTTTACTAAGATTAGTAATGAGCT-----------------------T-------TACT----AT--ACCCTTAGGTATCCCGTGGAGGTGGTCTACACAGAACTGCAATCCTATCAGGAACGGGSizeHit CountTotal NormTotal
No Reads
droEug1
---------------A-----TCATGT---TTCGGTTGATCCTCATCG---CCAGCCTG---GCTCAGC---------TAATCTTAGCGCAGGCAGATCTAAAAGATCTG---------------GATGGACCTAATATATGTAAAA-AAGAGAAACGTAAGCGT-----------AGTCT--ATATAGCA---------ATCA---------AAATGGTCAGCTACTATTAATAAATT--------------------------------AAT----GA--ACCTTTAGGTATCCTGTGGAAGTTGTCTTCACAGAACTGCAATCTTACCAAGAACGCGSizeHit CountTotal NormTotal
No Reads
dm3
C--------------A-----CCATGT---TGCCGGTAATCCTCATAG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGCAAAAGAAGAGAACTGTAAGCTT-----------ATCCC--CTATCACG-------------------A-CAAATGAACTA----AATTAATGAATA--------------------------------CTT----TT--ACCTTTAGATATAACGTAGACGTTGTCTACACAGAACTGCAATCGTTCCAGGAACGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................AAAGATCTG---------------GATGGACCCAAT...........................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................TACTGGCTCAGGCGGATCTTAAAGA..........................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
.............................................................................................................G---------------GATGGACCCAATATCTGCAAAAGAAG.............................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGCCTG---GCCCAGC---------TGGTACTGGCTCAGG.......................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
.................................................................................................TCTTAAAGATCTG---------------GATGGACCCAAT...........................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................................................................................TCTTAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................2114.0040000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001000000010000
.....................................................................................................AAAGATCTG---------------GATGGACCCAATATCTGC.....................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................GGACCCAATATCTGCAAAAGAA..............................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACGTAGACGTTGTCTACACAGAACT....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCAGGCGGATCTTAAAGATCTG---------------GATGGA.................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTAAAGATCTG---------------GATGGACCCAATAT.........................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CAGC---------TGGTACTGGCTCAGGC......................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................ATATCTGCAAAAGAAGAGAACT.......................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTGTCTACACAGAACTGCAATCGT............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
..............................................................................................................................ATGGACCCAATATCTGCAAAAGAAGA............................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GACGTTGTCTACACAGAACTGCA.................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CTTAAAGATCTG---------------GATGGA.................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................CATGT---TGCCGGTAATCCTCATA.....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAAGATCTG---------------GATGGACCCA.............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTCTACACAGAACTGCAATCGTTCCAG.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AGC---------TGGTACTGGCTCAGGCGGATCTT...............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T---TGCCGGTAATCCTCATAG---CCTGCCTG---G.....................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGGACCCAATATCTGCAAAAGAAG.............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................CTCAGGCGGATCTTAAAGA..........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T---TGCCGGTAATCCTCATAG---CCTGCCTG---GC....................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ACCCAATATCTGCAAAAGAAGAGAACT.......................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACACAGAACTGCAATCGT............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................TAAAGATCTG---------------GATGGACCCAATATC........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................CTCAGGCGGATCTTAAAGATCTG---------------GATGG..................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTAAAGATCTG---------------GATGGACCCAATA..........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGT---TGCCGGTAATCCTCA.......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CTGCAAAAGAAGAGAACT.......................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CTG---GCCCAGC---------TGGTACTGGCTCAGGCGGA...................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CACG-------------------A-CAAATGAACTA----AATTAATGA........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TCTTAAAGATCTG---------------GATGGACCCAA............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................GAACTGCAATCGTTCCAGGAACGGG2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................AACGTAGACGTTGTCTACACAGAACTG...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TAAAGATCTG---------------GATGGACCCAAT...........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T---TGCCGGTAATCCTCATAG---CCTGCCT..........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTACTGGCTCAGGCGGATCT................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................TCTG---------------GATGGACCCAATATCTGCAAAAGAA..............................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGT---TGCCGGTAATCCTCA.......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AGGCGGATCTTAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GACGTTGTCTACACAGAACTGCAATCG.............2711.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TGGACCCAATATCTGCAAAAGAAGAGA..........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CCCAGC---------TGGTACTGGCTCAGG.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CTACACAGAACTGCAATC..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACAGAACTGCAATCGTTCCAGGAACGG.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................TG---------------GATGGACCCAATATCTGCAAAAGA...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ACCCAATATCTGCAAAAGAAGAGA..........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAAGATCTG---------------GATGGACCC..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................TG---------------GATGGACCCAATATCTG......................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGGTAATCCTCATAG---CCTGCCTG---GCC...................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CTACACAGAACTGCAATCGTTCCAGGA.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CATAG---CCTGCCTG---GCCCAGC---------TGGTAC................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GGTACTGGCTCAGGCGGATC.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................CTG---------------GATGGACCCAATATCTGC.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATGT---TGCCGGTAATCCTCAT......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AACTGCAATCGTTCCAGGAACGGG2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................AGC---------TGGTACTGGCTCAGGCGG....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................TG---GCCCAGC---------TGGTACTGGCTCAGGC......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TATAACGTAGACGTTGTCTACACAGAA......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GATCTG---------------GATGGACCCAATATCTGCA....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCCTCATAG---CCTGCCTG---GCCCAGC---------......................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CTTAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................CAATCGTTCCAGGAACGGG1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGT---TGCCGGTAATCCTCATA.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C--------------A-----CCATGT---TGCGGGTAATCCTCATGG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAACATCTGCAAAAGAAGAGAACTGTAAGCTT-----------ATCCC--CTGTCACG-------------------A-CAAATGAACTA----AATTAATAGATA--------------------------------CTT----TT--ACCTTTAGGTATAACGTAGACGTGGTCTACACAGAACTGCAATCGTTCCAGGAACGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................TCTTAAAGATCTG---------------GATGGACCCA.............................................................................................................................................................................................................2313.00300300000000000000
.............................................................................................................................................................................................................................................................................................................ACGTGGTCTACACAGAACTGC..................2113.00330000000000000000
..................................................................AGC---------TGGTACTGGCTCAGGCGGATCT................................................................................................................................................................................................................................................2512.00200000000002000000
...........................................................................................................................................CTGCAAAAGAAGAGAAC........................................................................................................................................................................................1712.00200000000200000000
.................................................................................TACTGGCTCAGGCGGATCTTAAAGATC........................................................................................................................................................................................................................................2712.00200010000001000000
...............................................................................................................................TGGACCCAACATCTGCAAAAGAAGAG...........................................................................................................................................................................................2612.00200200000000000000
.................................................................................................TCTTAAAGATCTG---------------GATGGACCCAAC...........................................................................................................................................................................................................2512.00201010000000000000
..................................................................................................CTTAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................2012.00200200000000000000
.................................................................................................TCTTAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................2111.00100100000000000000
.................................................................................................TCTTAAAGATCTG---------------GATGGACCCAAT...........................................................................................................................................................................................................2511.00100000001000000000
..................................................................AGC---------TGGTACTGGCTCAGG.......................................................................................................................................................................................................................................................1811.00100000100000000000
..................................................................................................CTTAAAGATCTG---------------GATGGACCC..............................................................................................................................................................................................................2111.00101000000000000000
.....................................................................................................AAAGATCTG---------------GATGGACCC..............................................................................................................................................................................................................1811.00101000000000000000
..................................................................AGC---------TGGTACTGGCTCAGGC......................................................................................................................................................................................................................................................1911.00100010000000000000
............................................................................................................................................TGCAAAAGAAGAGAACTGTATA..................................................................................................................................................................................2211.00100000000000010000
....................................................CTGCCTG---GCCCAGC---------TGGTACTG..............................................................................................................................................................................................................................................................2211.00101000000000000000
....................................................................................................TAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................1811.00100100000000000000
............................................................................................................................................................................................................................................................................................................GACGTGGTCTACACAGAACTGCAATCGT............2811.00100000000001000000
.................................................................................TACTGGCTCAGGCGGATCTTTT.............................................................................................................................................................................................................................................2211.00100000000000001000
.................................................................CAGC---------TGGTACTGGCTCAGGC......................................................................................................................................................................................................................................................2011.00100010000000000000
....................................TAATCCTCATGG---CCT..............................................................................................................................................................................................................................................................................................1511.00100000000001000000
....................................................................................................................................................................................................................................................................................................................CTACACAGAACTGCAATC..............1811.00100100000000000000
................................................................................................ATCTTAAAGATCTG---------------GATGGACCCAAT...........................................................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................CGTGGTCTACACAGAACTGCAATCGT............2611.00100000000001000000
droSec2
C--------------A-----CCATGT---TGCGGGTAATCCTCATGG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATTTGCAAAAGAAGAGAACTGTAAGCTT-----------ATCCC--CTGTCACG-------------------A-CAAATGAACTA----AATTAATGGATA--------------------------------CTT----TT--GCCTTTAGGTATAACGTAGACGTTGTCTACACAGAACTGCAATCGTTCCAGGAACGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................AGC---------TGGTACTGGCTCAGGCGGATCT................................................................................................................................................................................................................................................2511.0010100
.................................................................CAGC---------TGGTACTGGCTCAGGCGGAT..................................................................................................................................................................................................................................................2411.0010100
.......................................TCCTCATGG---CCTGCCTG---GCC...................................................................................................................................................................................................................................................................................2011.0011000
................................................................................................ATCTTAAAGATCTG---------------GATGGACC...............................................................................................................................................................................................................2211.0011000
droYak3
C--------------A-----CCATGT---TGCGGGTTATCCTCATCG---CCTGCCTG---GCCCAGC---------TGGTACTGGCTCAGGCGGATCTTAAAGATCTG---------------GATGGACCCAATATCTGCAAAAGGAGAGAACTGTAAGCTG-----------GTCCC--TGATCACG-------------------A-CAAATCAACTA----AACTAATGAGTA--------------------------------CTT----CT--ACCTTTAGGTATAACGTAGACGTTGTCTACACAGAACTGCAATCGTACCAGGAGCGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................AACTGCAATCGTACCAGGA.....1911.00100000010000
..............................................................................................GGATCTTAAAGATCTG---------------GATGGACCCAAT...........................................................................................................................................................................................................2811.00101000000000
.............................................................................................................................................................GTAAGCTG-----------GTCCC--TGATC........................................................................................................................................................1811.00100100000000
.................................................................CAGC---------TGGTACTGGCTCAGGC......................................................................................................................................................................................................................................................2011.00101000000000
..............................................CG---CCTGCCTG---GCCCAGC---------TGGTACTG..............................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................ATGGACCCAATATCTGCAAAAGGAGA............................................................................................................................................................................................2611.00100000010000
.................................................................CAGC---------TGGTACTGGCTCAGGCGG....................................................................................................................................................................................................................................................2211.00100000010000
droEre2
C--------------A-----CAATGT---TGCGGATAATCCTAATCGCCGCCTGCCTA---GGCCAGC---------TGGTCCTGGCTCAGGCGGATCTTAAAGATCTC---------------GTTGGACCCAATATCTGCAAAAGAAGAGAAGTGTAAGCTC-----------GTTTC--TTATCCCA-------------------A-CAAACTAACTT----ATTTAATGAGTC--------------------------------ATT----TT--ACCTTTAGATATAACGTAGAGGTTGTCTACACGGAACTGCAATCCTACCAGGAACGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................ATCTC---------------GTTGGACCCAATATC........................................................................................................................................................................................................2011.0011000000
......................................................................................................AAGATCTC---------------GTTGGACCCAATA..........................................................................................................................................................................................................2111.0010010000

Generated: 06/08/2015 at 05:15 PM