ID:

dpe_2129

 Coordinate:

scaffold_872:572-722 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL19360-cds]; exon [dper_GLEANR_215:3]; intron [Dper\GL19360-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAGGCCAAGTCAATGGAGGCAACCACCACAGCAGCGACCAGTCACTCGACAGCAGCCACAGCAACGACCGATACGGCAGCAACAACAACAGCAGCAGAGGCCACAGAGGCACAACTATTGGGAGAAGCCCCAACGGCATCCCCAACATCAGCGACAACACCAATGGCAGCAGCAGCAACAACATCAGAAACAGGAACAGCAACAGCTCCAGCGTAGTCAGGAACAAAACGGGGAACCCCAGATCCAGAG
**************************************************...((.((((.................((.((..........)).))....(((.....))).......(((((.((.(((.....))).)))))))..................)))).)).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
 V050
head
....................................................................................................GGCCACAGAGACACCACTATTGGGA.............................................................................................................................. 25 2 7 0.14 1 1 0 0
...............................................................................................................CACCACTATTGGGAGAAGCCCCAACG.................................................................................................................. 26 1 10 0.10 1 1 0 0
................................................................................................................ACCACTATTGGGAGAAGCCCCAAC................................................................................................................... 24 1 10 0.10 1 1 0 0
....................................................................................................................................................................................................................................AACGGGGAACAACAGATC..... 18 2 17 0.06 1 0 1 0
....................................................................................AAACATCAGCAGCAGAGGCC................................................................................................................................................... 20 2 19 0.05 1 0 0 1

Anti-sense strand reads

TCGTCCGGTTCAGTTACCTCCGTTGGTGGTGTCGTCGCTGGTCAGTGAGCTGTCGTCGGTGTCGTTGCTGGCTATGCCGTCGTTGTTGTTGTCGTCGTCTCCGGTGTCTCCGTGTTGATAACCCTCTTCGGGGTTGCCGTAGGGGTTGTAGTCGCTGTTGTGGTTACCGTCGTCGTCGTTGTTGTAGTCTTTGTCCTTGTCGTTGTCGAGGTCGCATCAGTCCTTGTTTTGCCCCTTGGGGTCTAGGTCTC
**************************************************...((.((((.................((.((..........)).))....(((.....))).......(((((.((.(((.....))).)))))))..................)))).)).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V042
embryo
 V057
head
 M021
embryo
...........................................GGTGAGCTGTCGTCGGTGTCTCT......................................................................................................................................................................................... 23 3 14 0.86 12 12 0 0 0 0
............................................................................................................................TCTTCGGGGTTGCCGTAGAGGTT........................................................................................................ 23 1 9 0.78 7 4 1 2 0 0
.............................................................................................................................CTTCGGGGTTGCCGTAGAGGTTGT...................................................................................................... 24 1 12 0.75 9 8 1 0 0 0
..............................................................................................................................TTCGGGGTTGCCGTAGAGGTTGT...................................................................................................... 23 1 12 0.50 6 6 0 0 0 0
..........................................CGGTGAGCTGTCGTCGGTGTCTCT......................................................................................................................................................................................... 24 3 13 0.46 6 6 0 0 0 0
............................................GTGAGCTGTCGTCGGTGTCTCT......................................................................................................................................................................................... 22 2 11 0.36 4 4 0 0 0 0
.............................................................................................................................CTTCGGGGTTGCCGTAGAGGTT........................................................................................................ 22 1 12 0.33 4 3 1 0 0 0
...................CCGTTGGTGGGGGCGTCTCTGGT................................................................................................................................................................................................................. 23 3 3 0.33 1 0 1 0 0 0
..............................................................................................................................TTCGGGGTTGCCGTAGAGGTT........................................................................................................ 21 1 12 0.33 4 4 0 0 0 0
...........................GGTGTCGTCGTTGGCCAGTG............................................................................................................................................................................................................ 20 2 4 0.25 1 1 0 0 0 0
................................................................................................................................CGGGGTTGCCGTAGAGGTTGT...................................................................................................... 21 1 12 0.25 3 3 0 0 0 0
...................................................................................................................................GGTTGCCGTAGAGGTTGTAGT................................................................................................... 21 1 4 0.25 1 1 0 0 0 0
..............................................GAGCTGTCGTCGGTGTCTCT......................................................................................................................................................................................... 20 2 12 0.25 3 3 0 0 0 0
...........................................................................................................................CTCTTCGGGGTTGCCGTAGAGGTTGT...................................................................................................... 26 1 9 0.22 2 2 0 0 0 0
............................................................................................................................TCTTCGGGGTTGCCGTAGAGGTTGT...................................................................................................... 25 1 9 0.22 2 2 0 0 0 0
..................................................................................................................................................................................GTCTTGTAGTCTTTGTCCTT..................................................... 20 2 6 0.17 1 0 0 0 1 0
...............................................................................................................................TCGGGGTTGCCGTAGAGGTTGT...................................................................................................... 22 1 12 0.17 2 2 0 0 0 0
...................................................................................................................................GGTTGCCGTAGAGGTTGT...................................................................................................... 18 1 13 0.15 2 2 0 0 0 0
.................................................................................................................................GGGGTTGCCGTAGAGGTT........................................................................................................ 18 1 13 0.15 2 1 0 1 0 0
...............................................AGCTGTCGTCGGACTAGTTG........................................................................................................................................................................................ 20 3 20 0.15 3 0 2 0 0 1
...................................................................................................................................................................................................................................TTTGCCGCTTGGGGTCACGGT... 21 3 7 0.14 1 0 0 0 1 0
..........................................................................................................................CCTCTTCGGGGTTGCCGTAGAGGT......................................................................................................... 24 1 9 0.11 1 1 0 0 0 0
...........................................................................................................................CTCTTCGGGGTTGCCGTAGAGGT......................................................................................................... 23 1 9 0.11 1 1 0 0 0 0
..........................................................................................................................CCTCTTCGGGGTTGCCGTAGAGGTT........................................................................................................ 25 1 9 0.11 1 1 0 0 0 0
...........................................................................................................................CTCTTCGGGGTTGCCGTAGAGGTT........................................................................................................ 24 1 9 0.11 1 1 0 0 0 0
............................................................................................................................TCTTCGGGGTTGCCGTAGAGGTTG....................................................................................................... 24 1 9 0.11 1 0 1 0 0 0
............................................................................................................................TTTTCGGGGTTGCCGTAGAGGT......................................................................................................... 22 2 9 0.11 1 1 0 0 0 0
.........................................TCGGTGAGCTGTCGTCGGTGTCTCT......................................................................................................................................................................................... 25 3 11 0.09 1 1 0 0 0 0
................................................................................................................................CGGGGTTGCCGTAGAGGTTG....................................................................................................... 20 1 12 0.08 1 1 0 0 0 0
.................................................................................................................................GGGGTTGCCGTAGAGGTTGT...................................................................................................... 20 1 12 0.08 1 0 0 1 0 0
..............................................................................................................................TTCGGGGTTGCCGTAGAGGTTG....................................................................................................... 22 1 12 0.08 1 1 0 0 0 0
.............................................................................................................................CTTCGGGGTTGCCGTAGAGGTTGTG..................................................................................................... 25 2 12 0.08 1 1 0 0 0 0
..................................................................................................................................GGGTTGCCGTAGAGGTTGT...................................................................................................... 19 1 12 0.08 1 0 0 1 0 0
..................................................................................................................................GGGTTGCCGTAGAGGTTG....................................................................................................... 18 1 12 0.08 1 1 0 0 0 0
............................................................................................................................GGTTCGGGGTTGCCGTAGAGGTTGT...................................................................................................... 25 3 12 0.08 1 1 0 0 0 0
................................................................................................................................CGGGGTTGCCGTGGAGGTTGT...................................................................................................... 21 2 12 0.08 1 1 0 0 0 0
................................................................................................................................CGGGGTTGCCGTAGAGGTT........................................................................................................ 19 1 12 0.08 1 1 0 0 0 0
...............................................................................................................................TTGGGGTTGCCGTAGAGGTT........................................................................................................ 20 2 13 0.08 1 1 0 0 0 0
............................................GTGAGCTGTCGTCGGTGTCTC.......................................................................................................................................................................................... 21 2 14 0.07 1 1 0 0 0 0
................................................................................................................................CGGGGTTGCCGTAGAGGT......................................................................................................... 18 1 14 0.07 1 1 0 0 0 0
..............................................................................................................................................................TGTGGTTACCGTTGTCGTCTTAGT..................................................................... 24 3 14 0.07 1 0 0 1 0 0
............................................GTGAGCTGTCGTCGGCGT............................................................................................................................................................................................. 18 1 14 0.07 1 1 0 0 0 0
................................................................................................................................CGTGGTTGCCGTAGAGGTTGT...................................................................................................... 21 2 14 0.07 1 1 0 0 0 0
...................................................................................................................................GGTTGCCGTAGAGGTTGG...................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................AGGGTTGCCGTAGAGGTT........................................................................................................ 18 2 20 0.05 1 1 0 0 0 0
................................................................................................................................TTGGGTTGCCGTAGAGGTTGT...................................................................................................... 21 3 20 0.05 1 1 0 0 0 0
......................................AGGTCGGTGAGCTGTCGT................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_872:522-772 - dpe_2129 AGCAGGC--C--AAGTCAATGG-----------------------------------------AG---------------------------------GCAACCACCACAGCA---GCG---ACCAGTCACTCGACAGCAGC-----------------------------------------CACAGCAACGACCGATACG---------GCAG------------------------CAACA--------------------------------------------------------------------------------------------------------------------A---------------------CAACAGC-AG-------CAGAGGCCA------CA-GAGGCACAACTATTGG---GAGAAGCCCCAACGGCATCCCCAAC-----------------ATC---------------------------------------A---------GCGACA------AC---A---CCA------ATGGCAGCAGCA----------GCAACAACATCAGAAACAGGAACAGCAACAGCTCCAGC---------------------------------------------------------GTAGTC-----------AGGAACA---AAACGGGGAACCCCAGATCCAGAG
dp5 Unknown_group_319:7796-8046 + GGCCTGG-----------CTCA-----------------------------------------ATAAAGC------------------T---------CTGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTTCAGCAGGGTCCTGCCCAGCAGATATGAGAAGCAGCCAAATTAT------------------------------------------------------------------AACCTG--------------------------T-------------TTGAG-----G------------CG--------GAGATTGCCCTTCA---AGCAGGTCGA---GGGGAGTTGG---------GGGTGCTGGC----------CCTAAA------------GCGGCTGGGCAGCCACCTGGT------------------------GACGGTGGAGAGGCTGGCCA-AGTCAA---------------------------------------------------GGGACCCGGTCCAGTGCCACCGATGCCACG---------CATTCGGCCACACCCGCG
droWil2 scf2_1100000004888:1009738-1009969 - AGCAGCA-----------GCAA-----------------------------------------CAACAAC------------------A---------GCAGCAACAACAACAGCAGCA---------------GC---A---GCAACAGCAACAACAGCAG---------CAGCAACAACAA-----------------------CAGCAG---------------------------CAA---CAA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------AGC----------------A-----------------------------------------GCAACAACAGCAACAGCAACAACAACA------G---------------CAGCAGCAACAGCAACAGCAACAACA------------------------GCAGCAGCAGCAGCAA--CTGC--AACAACAG------CAGCAG------CAACAGCAAC---------------------------------------------------AGCAACAACATC-----------AGCAGAA---------ACAGCAACAACAGCAGCA
droVir3 scaffold_10358:4160-4388 - AGCAGCA-----------GCAA-----------------------------------------CAGCAAC------------------A---------ACAGCAGCAGCAACAGCAACA------------ACAGCAGCAAC---------AACAGCAACAA------------C--------------------------A---------GCAG---CAG------------------CAA---CAG-----------------------------------------------------------------C---------------------------------------------------------------AACAACACCAGC-----------AGC----------------A-----------------------------------------ACAGCAGCAGCAAC---AGCAACAAGA---GCAGCAGCAACAACAGCAGCA------------------GCAACA---------------CCA------GTACCAACAGCAGCATCA----GC------AACAGCAACAACAG------CAAATACAGC------------------AGCAGC---------------------------A------ACAAC-----------AGCTCGA---------GGGACTCCAGCATCAGCC
droMoj3 scaffold_6500:16033354-16033609 - AGCAGCAGCA--ACA---ACAG-----------------------------------------CAGCAGC------------------AGCAACAGCAGCAGCAGCAGCA---------------------ACAGCAGCAGCAGC---------AGCAACAGCAGCAGCAGCAGCAACAGCAG-----------------------TAGCAG---------------------------CAG---CAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGC-AG------------C----A---------GC------------------------A-----ACAGCGGC---AGC---AGCAGCAACAGCAACAG---------------------CAGCAGCAGCAGCAACAGC------------A---GCAACAGCAGCAGCAGCAACA----------GC------AGCAGCAGCAGCAACAGCAGCAGCAGCAGC---------------------------------------------------AACAGCAGCAGC-----------AGCAGCA---------ACAGCAGCAGCAACAGCA
droGri2 scaffold_3013:3947-4196 - AGCAGCA-----------GCAG-----------------------------------------CAGCGGC------------------A---------GCAGCAGCAGCAGCAGCGGCA------------GCAGCAGCAGC---------GGCAGCAGCAGCAGCAGCAGCAGC--------------------------A---------GCAG---------------CAGCAGCGGCAG---CAG---------------------------------------------------------------------------------------------------------------------------------------------C----------AGCAGCGGCAGCGGCA-GCG-----------------------------------------GCAGCAGC---------AGCAGCAGCA---GCAG---------------CA------------------GCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCA----------GC------AGCAGCAGCAGCAGCAGCAGCAGCAGCAGC---------------------------------------------------AGCAGCAGCATC-----------AGCAGCG---------GCAGCAGCAGCAGCAGCG
droAna3 scaffold_13248:2270583-2270809 - dan_4064 AGGAGCG-----------ACGG-----------------------------------------CAGCAGC------------------A---------GCAGCCACAGCAGCAACAG------------------C---A---GC--------------------------------------AGCAGCAAC---------AGCAACAGCAACAGCAACAGCAGCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------GCAGCCACAGC-----------------AGCAGCAACA------G---------------CAGCAACGACAGCAGCAGCAGCAACG------------------------TCAGCAGCAGCAGCAA--CGAC--AACAACAG------CA---AGCAGTGCAGCAACAGC---------------------------------------------------ATCATGTGGAGC-----------AGCAACA---------G-----ACGGGGAGCGCC
droBip1 scf7180000395567:7272-7493 - TGCTGCA-----------GCGG-----------------------------------------CGGCGGC------------------A---------GCAGCAGCGGCAGCAGCC-------------------------------CAGCAACAGCAGC-----------------------TGCAGCAAC---------AGCACCAGCAGCAGCAACACCAGCAGCAA---------CAA---CA-----------------------------------------------------------------GC---------------------------------------------------------------AGCAACATCAG--------------------------C-------------TGCA-----------------------------ACAGCACCAGCAAC---AGT------------------------------T------------------ACAACA---------------CC---------AGCAGCAGCA----------GC------AACAGCAACAGCACCTGCACCAGCAACAGC---------------------------------------------------TTCAGCCGCACCAGCA--GC---AAATGCA---------ACACCACCAGCAGCAACA
droKik1 scf7180000302274:154782-155028 - AGCAACA-----------TGTGGCTGCTGT---------------------------------TA--TGCAGCAGCAACAGCAACACCA---------GCAACAGCAGCAGCACTCACA---------------TC---------------A---------C---------GCCC--------------AAC---------AGCAGCATGCACAGCAACAGCA-----------------------------------------------------------------------------------------TCATGGCCATTCATTGCATCCGCACCACACACATCAGCAGCAA---CAACAAC-----------------------------------------------------------------------------------------------------------------AGCAGCAGCA------G---------------CAGCAACAACA---------CCACC---------------------------AGCAGCAG-------------------------------CAT------CAGCAGCAACATGCACAGCAACAGCAGCAGCAGCAACACCATGC------------------------CGC--------------------------------CCAGCTGGCCCACAC
droFic1 scf7180000454039:96056-96294 - CAACAGC--A--------ACAA-----------------------------------------CTGCAAC------------------A---------GCAGCAGCAGCAACTACTGCAACA---------ACAGC---AAC---------AACTGCAACAG------------C--------------------------A---------GCAG---------------CAGCAACAGCAGCAACAG--------------------------------------------------------------------------------------------------------------------------------------CACCAGC-----------AGC----------------A-----------------------------------------ACAACTGCAGCAGC---AGCAACAGCA---GCAACAGCAGC---------AGC------A------GCACCAGC------------AGCAACTGCAGCAGCAGCAACAGCA----------GC------AGCAACAGCAGCAACAATTGCAACAGCAGC---------------------------------------------------AACCCTTGCAAC-----------AGCAACA---------GCAGCCACAAGTGCAACA
droEle1 scf7180000491047:337925-338153 - AGCAGCG-----------GCCT-----------------------------------------AGGCAAT------ATA---------A---------GCCACGGCTGCAATATCA------------------GCAGCAGC------------AATTGCAA---------CCAC--------------------------T---------GCTG---CAG------------------CAG---CAG-----------------------------------------------------------------C------------------------------------------A---A------------------CAGCAGC----AG-------CAAGAGCAA------CA-GCAACAACAGCAGCAA---GAGCA--------------------ACAGCAAC------------------A------A---------------------CAGCAGCAACAGCAGCAGCA------------------------GCAGCAACAACAGCAG--CAAC--AACAACAG------CAGACA------CAACAGCAGC---------------------------------------------------AACAACAACAGC-----------AGCAGCA---------GCAACAACAGCAGCAGCC
droRho1 scf7180000779902:229058-229282 - AGCAGCA-----------GCCG-----------------------------------------AATCAGC------------------A---------GCAGCAGCAGAAACAACAGCA---------------GC---A---AAAACAG-----------------------------------------------------------------------------------------------------------------ACAAAACCAACAGCAACGTCTGCAACAGCA-------------------------------------------------------------GCAACAACAGCAGCAGCAACATCAACAACAACGT--------------------------A-------------TTCA-----------------------------ACAGCAGC------------------------------------------AGCAACATCA---------ACAACA---------------ACG------TGTGCAGCAGCA----------GC------AACAACAGCAGCAACGTATGCAACAGCAGC---------------------------------------------------AACAAAACAACC-----------AGCAACA---TCAGAGAGAACGACAG--------
droBia1 scf7180000298389:1471465-1471690 - AGCAGAA-----------GCAG-----------------------------------------AAGGAGC------------------A---------GCAGCAACCACAACAGCGGCA---------------ACACCAGC------AGCAGCAACAGCAG---------AAAC--------------------------A---------ACAG------------------------CAACATCAG--------------------------------------------------------------------------------------------------------------------------------------CCACAGC-----------AGC----------------A-----------------------------------------GCAATAGCAACAAA---AGCAACAAAA---GCAACAACAG---------CAGCAACAGCA---------GCAACA---------------ACA------GCAGCAACAGCA----------CC------AGCAACAACAGCAACTACACCAGCGACAAC---------------------------------------------------AGCAACTACACC-----------AGCAACA---------ACAGCAACTACACCAGCA
droTak1 scf7180000415192:82746-82986 - GGCAGCA-----------ACAG-----------------------------------------CTACGGT------------------A---------GCAACAACCACAGTCGCAACA---------------AC---C---AAGGCAGCAACAACCACAG---------CGGCGACAACCA-----------------------AG---GCAG------------------------CAACAACAA--------------------------------------------------------------------------------------------------------------------------------------CCACTGC-----------AGC----------------A-----------------------------------------ACAACCACAGCGGC---AACTACTAAG---GCTGCAACAAC---------AAC---------CACCGCAGCAACA---------------ACAACCACCGCCGCAACAACA----------AC------CACAGCGGCAACTACTAAGGCTGCAACAAC---------------------------------------------------AACTACCGCAGC-----------AACAACA---------AACACCGCAGCAACAACA
droEug1 scf7180000409692:437847-438091 - AACCGCA-----------ACAG-----------------------------------------CAGCACC------------------T---------GCACCAGCAGCAGCATCAACA---------------CC-----------------------------------------------AACAACAAC---------AGCAACAGCAACAGCAACATCAGCAGCAT---------CAG---CA-----------------------------------------------------------------AC---------------------------------------------ACCA------------------------A-CAAC-------ATCAGCAA-------------------------------------------CACCAACAAC-----------------ATCA------------G---------------CAACACCA---------------------------------AC---------AACATCAG-------------------------------CAACATCAACAACATCTGC------ACCAACAGCAGCAGCAGCAACAACAGGCCAACTTTCTCCACATTCAGCAATCGCTCCAACATAACC--ACCAACTAAACCAC---------C--CAGAACCA
dm3 chr2L:5322044-5322290 - AGCAGAC--GGCGCA---AATG-----------------------------------------ATGCAAA------------------TGCCGTACCAGCAGCAACCACAACAGCAAC---------------------AACAGA---------TGCAGCAACAATTGATGATGCAACAGCAG-----------------------CAGAGA---------------------------CAG---CAA---------------------------------------------------------------------------------------------------------------------------------------------CAATTGCCGC-AG------------A----T---------GC------------------------A-----ACAGCGCC---AGC---AGCAACATTT------G---------------CAACGACAACTGCAACTGCAGCAACA---------------GC---------AGCAGCAGCAGCAA--CAAC--AACAGTTG------CAGATC------GTCCAGCGCC---------------------------------------------------AGCAGCAGCAAC-----------AGCAGTC---------ACAACTGCAAGTCCAGCA
droSim2 3l:5195105-5195344 - CGCCGCC--A--ACGCCACCAG--------CAACAACAACAACACCACCACCACAGGAAGCCGCAGCGGC------------------A---------GCAAC------------------------------------------------------AACAA------------------GTG-----------------TT---------GCCG------------------------GGACAACAGTCGCAGCAAAGGCTAGCAAA-------------------------------------------------------------------ACCACAAGCAGAACAAGCAG---CAGCAAC-----------------------------------------------------------------------------------------------------------------AGCAGCAGCA------G---------------CAGCAACAACA------------------------------GCG------ACAGCAGCAACA----------TC------AACAGCAGCAGCAACAGCAGCAGCGGCAGC---------------------------------------------------AGCAGCAGCAGC-----------AGTACCT---------GCAACAGCAACACCTGCA
droSec2 scaffold_3:7186390-7186609 - AAGTGGC--C--------G-CG-----------------------------------------CAACATC------------------A---------ACAGCAG--GCTGCAGTGGCT-------------GCTCACCAGC-----------------------------------------AGCAGCAACAGCAGTTGCA---------GCAG------------------------CAGCAA-----------------------------------------------------------------------------------------------------------------------------------------CAACTG--------------------------C-------------TTCAGTTGTCCATCCAACAGGCGGCTCACC--------------------ATCATCAGCA------G---------------GAGCAGCATCG---------CCA---------------------------ACAGCAGCAACA----------GC------AACACCAGCAGCAACAACAGCAGCAGCATC---------------------------------------------------ACCAGCAGCAAC-----------AGCAGGG---------TCATCCACAGGCCCCGCC
droYak3 3R:27627615-27627839 - ACCAGAT-----------GATACTCAATGC---------------------------------CAGC--CA---------------------------CCAGCAGCAGCAGCAGCA------------------ACAGCAGC-----------------------------------------CGCAGCAAC----------------------------------------------------------------------------------------ATCCGCAACAGCA-------------------------------------------------------------GCAGCAG---------------------CACCAA-CAGC-------AGCAGCAA------CACGTGGCACACGGAAAGA---AGGCAGCCA-GAAAACACCAGCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------ACA------GCAGCAGCAACA----------GC------------AACAGCA---------------------------GCAGCAGCAGCAGCAACAACAGACCAG--------------------TGCGC-------------------------------CTATGTACAATAACA
droEre2 scaffold_4845:21375796-21376024 - AGCAGCC-----------GCAG-----------------------------------------CAACATC------------------C---------GCAACAGCAGCCGCACCAGCA------------TCCGCAACAGT---------CGCAGCAACAT------------------CCG-----------------CA---------GCAT------------------------CAGCAACAT-----------------------------------------------------------------------------------------------------------------------------------CCGCAACAGC-----------AGC----------------C-----------------------------------------ACAACAGCAGCCAC---ACCAGCAGCC---GCACCAGCATC---------CGCATCATCA---------GCCGCA---------------ACA------GTCGCAGCAACA----------GC------CGCAACAGCAGCAACATCCGCAACAGCAGC---------------------------------------------------CGCAACCACATC-----------CGCATCA---------TCAGCCGCAGCAGCATCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGCAGGC--C--AAGTCAATGG-----------------------------------------AG---------------------------------GCAACCACCACAGCA---GCG---ACCAGTCACTCGACAGCAGC-----------------------------------------CACAGCAACGACCGATACG---------GCAG------------------------CAACA--------------------------------------------------------------------------------------------------------------------A---------------------CAACAGC-AG-------CAGAGGCCA------CA-GAGGCACAACTATTGG---GAGAAGCCCCAACGGCATCCCCAAC-----------------ATC---------------------------------------A---------GCGACA------AC---A---CCA------ATGGCAGCAGCA----------GCAACAACATCAGAAACAGGAACAGCAACAGCTCCAGC---------------------------------------------------------GTAGTC-----------AGGAACA---AAACGGGGAACCCCAGATCCAGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
dp5
GGCCTGG-----------CTCA-----------------------------------------ATAAAGC------------------T---------CTGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTTCAGCAGGGTCCTGCCCAGCAGATATGAGAAGCAGCCAAATTAT------------------------------------------------------------------AACCTG--------------------------T-------------TTGAG-----G------------CG--------GAGATTGCCCTTCA---AGCAGGTCGA---GGGGAGTTGG---------GGGTGCTGGC----------CCTAAA------------GCGGCTGGGCAGCCACCTGGT------------------------GACGGTGGAGAGGCTGGCCA-AGTCAA---------------------------------------------------GGGACCCGGTCCAGTGCCACCGATGCCACG---------CATTCGGCCACACCCGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................ACCTTCAGCAGGGTCCTGCCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030300000000
........................................................................................T---------CTGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030300000000
....TGG-----------CTCA-----------------------------------------ATAAAGC------------------T---------CTGCTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000200
...................................................................................................................................................................................................................................................................................................................CCAAATTAT------------------------------------------------------------------AACCTG--------------------------T-------------TTGAG-----G------------C....................................................................................................................................................................................................................................................................................2312.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CG--------GAGATTGCCCTTCA---AGCAG.....................................................................................................................................................................................................................................................2212.0020200000000
.................................................................AAAGC------------------T---------CTGCTCGAGGCGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA---AGCAGGTCGA---GGGGAGT......................................................................................................................................................................................................................................2212.0020000000200
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AGCAGGTCGA---GGGGAGTTG....................................................................................................................................................................................................................................2012.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------GCGGCTGGGCAGCCACCTGG................................................................................................................................................................2231.3340400000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------GCGGCTGGGCAGCCACCTGGT------------------------G......................................................................................................................................2431.3340400000000
...........................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------AACCTG--------------------------T-------------TTGAG-----G------------CG--------GAGATTGCCCT................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCTGGCCA-AGTCAA---------------------------------------------------GG.......................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CG--------GAGATTGCCCTTCA---AGCAGGT...................................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................TAT------------------------------------------------------------------AACCTG--------------------------T-------------TTGAG-----G------------CG--------GAGATTGCCC.................................................................................................................................................................................................................................................................2811.0010100000000
................................................................TAAAGC------------------T---------CTGCTCGAGGCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---GGGGAGTTGG---------GGGTGCTG..................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCGA---GGGGAGTTGG---------A.........................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................GGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------GAGATTGCCCTTCA---AGCAGGTCGA---GGC..........................................................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------GACGGTGGAGAGGCTGGCCA-..................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCA-AGTCAA---------------------------------------------------GGGACCCGGC...............................................2211.0010100000000
..................................................................................................................TCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTTCAGCAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................AAGC------------------T---------CTGCTCGAGGCGGGATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................GAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................CAGCAGATATGAGAAGCAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
...................................................................................................TGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---------GGGTGCTGGC----------CCTAAA------------GCGGC...............................................................................................................................................................................2411.0010100000000
...............................................................ATAAAGC------------------T---------CTGCTCGAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................CTGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................................................................................TGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CG--------GAGATTGCCCTTCA---AGC.......................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCA---AGCAGGTCGA---GGGGAGTTGG---------..........................................................................................................................................................................................................................2611.0010000000100
.................................................................................................................TTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTTCAGCAGGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................ATGAGAAGCAGCCAAATTAT------------------------------------------------------------------AACCT.....................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................................................................................TGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------GTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................GAAGCAGCCAAATTAT------------------------------------------------------------------AACCTG--------------------------T-------------............................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................AAGCAGCCAAATTAT------------------------------------------------------------------AACCTG--------------------------T-------------............................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................T---------CTGCTCGAGGCGGGATTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTGGCCA-AGTCAA---------------------------------------------------GGG......................................................2011.0010100000000
......................................................................................................................T--------------------------------------------------------------------------------------------------------------------------------------------------GTGACCTTCAGCAGGGTCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................T---------CTGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................TGCTCGAGGCGGGATTCGCT--------------------------------------------------------------------------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................ACCTTCAGCAGGGTCCTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCA-AGTCAA---------------------------------------------------GGGACCCGGTCCAG...........................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTGGGCAGCCACCTGGT------------------------.......................................................................................................................................2130.6720200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTGGGCAGCCACCTGGT------------------------G......................................................................................................................................2230.6720200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCCAGTGCCACCGATGCCA.............................2220.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCCAGTGCCACCGATGCC..............................2120.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------GCGGCTGGGCAGCCACCTG.................................................................................................................................................................2130.3310100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCGGCTGGGCAGCCACCTG.................................................................................................................................................................2030.3310100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------GCGGCTGGGCAGCCACCTGGT------------------------.......................................................................................................................................2330.3310100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------GCGGCTGGGCAGCCACCTGGT------------------------A......................................................................................................................................2430.3310100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCGGCTGGGCAGCCACCTGG................................................................................................................................................................2130.3310100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGGGCAGCCACCTGGT------------------------C......................................................................................................................................2130.3310100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCGGCTGGGCAGCCACCTGGT------------------------T......................................................................................................................................2330.3310100000000
droWil2
AGCAGCA-----------GCAA-----------------------------------------CAACAAC------------------A---------GCAGCAACAACAACAGCAGCA---------------GC---A---GCAACAGCAACAACAGCAG---------CAGCAACAACAA-----------------------CAGCAG---------------------------CAA---CAA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------AGC----------------A-----------------------------------------GCAACAACAGCAACAGCAACAACAACA------G---------------CAGCAGCAACAGCAACAGCAACAACA------------------------GCAGCAGCAGCAGCAA--CTGC--AACAACAG------CAGCAG------CAACAGCAAC---------------------------------------------------AGCAACAACATC-----------AGCAGAA---------ACAGCAACAACAGCAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................GCAG---------------------------CAA---CAA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------A.......................................................................................................................................................................................................................................................................................................................................18200.15300030
..................................................................................................GCAGCAACAACAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15300030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAACAACA------------------------GCAGCA..................................................................................................................................................................28100.10101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAACA------G---------------CAGCA.....................................................................................................................................................................................................................25200.10202000
.......................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------AGC----------------A-----------------------------------------GCAACAAC...................................................................................................................................................................................................................................................................20200.10200002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------GCAGCAGCAGCAGCAA--CTGC--A...............................................................................................................................................22170.06101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG------CAGCAG------CAACAGC...............................................................................................................21200.05101000
....................................................................AC------------------A---------GCAGCAACAACAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAACAACA------G---------------C.........................................................................................................................................................................................................................20200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------G---------------CAGCAGCAACAG..............................................................................................................................................................................................................22200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------G---------------CAGCAGCAA.................................................................................................................................................................................................................19200.05100010
......................................................................................................................................GC---A---GCAACAGCAACAACAGCAG---------CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.....................................................................................................................CA---------------GC---A---GCAACAGCAACAACAGCAG---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
.................................................................................................................................................AACAGCAACAACAGCAG---------CAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACA------------------------GCAGCAGC................................................................................................................................................................22200.05100010
......................................................................................................................................................................................A-----------------------CAGCAG---------------------------CAA---CAA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------A.......................................................................................................................................................................................................................................................................................................................................21200.05100001
..........................................................................................................................................................AACAGCAG---------CAGCAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAACAACA------------------------GCAGCAGCA...............................................................................................................................................................29200.05100100
.......................................................................................................................................C---A---GCAACAGCAACAACAGCAG---------CAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACA------------------------GCAGCAGCA...............................................................................................................................................................22200.05101000
...............................................................................................................................................................................................................AGCAG---------------------------CAA---CAA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------AG......................................................................................................................................................................................................................................................................................................................................20200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG------CAGCAG------CAACAGC...............................................................................................................19200.05100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACA------------------------GCAGCAGCAGCAG...........................................................................................................................................................27200.05101000
..................................................................CAAC------------------A---------GCAGCAACAACAACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACA------------------------GCAGCAGCAG..............................................................................................................................................................24200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAACA------------------------GCAGCAGC................................................................................................................................................................25200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA------G---------------CAGCAGCAA.................................................................................................................................................................................................................20200.05100001
................................................................................................................................................CAACAGCAACAACAGCAG---------CAGCAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------CAGCAG------CAACAGC...............................................................................................................18200.05100010
...............................................................................................................................................................................................................................................CAA---CAA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------AGC----------------A-----------------------------------------GC.........................................................................................................................................................................................................................................................................19200.05101000
............................................................................................................................................................CAGCAG---------CAGCAACAACAA-----------------------CAGCAG---------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------G---------------CAGCAGCAACAGCA............................................................................................................................................................................................................22200.05101000
........................................................................................A---------GCAGCAACAACAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACA------G---------------CAGCA.....................................................................................................................................................................................................................22200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------G---------------CAGCAGCAACA...............................................................................................................................................................................................................21200.05100010
.................................................................................................................................................AACAGCAACAACAGCAG---------CAGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................CAGCAGCA---------------GC---A---GCAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.....................................................................................................GCAACAACAACAGCAGCA---------------GC---A---GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
......................................................................................................................................................................................................................................................AA--------------------------------------------------------------------------------------------------------------------------------------CAACAGC-----------AGC----------------A-----------------------------------------GCAACAA....................................................................................................................................................................................................................................................................20200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACA------G---------------CAGCAGCA..................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................AACAGC-----------AGC----------------A-----------------------------------------GCAACAACAGCAACA............................................................................................................................................................................................................................................................25200.05100100
droVir3
AGCAGCA-----------GCAA-----------------------------------------CAGCAAC------------------A---------ACAGCAGCAGCAACAGCAACA------------ACAGCAGCAAC---------AACAGCAACAA------------C--------------------------A---------GCAG---CAG------------------CAA---CAG-----------------------------------------------------------------C---------------------------------------------------------------AACAACACCAGC-----------AGC----------------A-----------------------------------------ACAGCAGCAGCAAC---AGCAACAAGA---GCAGCAGCAACAACAGCAGCA------------------GCAACA---------------CCA------GTACCAACAGCAGCATCA----GC------AACAGCAACAACAG------CAAATACAGC------------------AGCAGC---------------------------A------ACAAC-----------AGCTCGA---------GGGACTCCAGCATCAGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAGCAGCATCA----GC------A.........................................................................................................................................20110.273000000000000000000002000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------A------ACAAC-----------AGCTCGA---------GGGACTCCAGC.......26110.182000000000000000000000000000000000100000000000000100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------ACAGCAGCAGCAAC---AGCA......................................................................................................................................................................................................................................................19200.102000000000000000000000020000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGA---GCAGCAGCAACAACAGCAG..........................................................................................................................................................................................................................24100.101000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCA----GC------AACAGCAACA................................................................................................................................21200.102000000000000000000000001000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------GGGACTCCAGCATCAGCC21110.091000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------GTACCAACAGCAGCATCA----G.................................................................................................................................................22110.091000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG------CAAATACAGC------------------AGCAG.....................................................................................23110.091001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AACAGCAACAACAG------CAAATACAGC------------------A.........................................................................................26110.091000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAAC-----------AGCTCGA---------GGGACTCC..........21110.091000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------AGCTCGA---------GGGACTCCAGCATCAGC.25110.091000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----------AGCTCGA---------GGGACTCCAG........21110.091000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAAATACAGC------------------AGCAGC---------------------------A------AC................................................22110.091000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATACAGC------------------AGCAGC---------------------------A------ACAAC-----------AGCT..............................26110.091000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------CAAATACAGC------------------AGCAGC---------------------------.........................................................21110.091000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------GTACCAACAGCAGCATCA----GC------AACA......................................................................................................................................27110.091000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC---AGCAACAAGA---GCAG.........................................................................................................................................................................................................................................21110.091000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------GTACCAACAGCAGCATCA----GC------AA........................................................................................................................................25110.091000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAAC-----------AGCTCGA---------GGGACTCCAGC.......24110.091000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC-----------AGCTCGA---------GGGACTCC..........20110.091100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------GCAACA---------------CCA------GTACCAA.................................................................................................................................................................21110.091000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------GTACCAACAGCAGCATCA----GC------AATT......................................................................................................................................27110.091000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------A------ACAAC-----------AGCTCGA---------GGGA..............21110.091000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------A------ACAAC-----------AGCTCGA---------GGGACT............20110.091100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC-----------AGCTCGA---------GGGACTCCA.........21110.091000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------CCA------GTACCAACAGCAGCATC.......................................................................................................................................................21110.091000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACAGCAGCATCA----GC------AACAGCAAC.................................................................................................................................27110.091000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAAC---AGCAACAAGA---G............................................................................................................................................................................................................................................25110.091000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCA----GC------AACAGCAACAACAG------C.....................................................................................................................25120.081001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCA----GC------AACAGCAACAACAG------......................................................................................................................24120.081000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGA---GCAGCAGCAACAACAG.............................................................................................................................................................................................................................21120.081000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---AGCAACAAGA---GCAGCAGCAACA.................................................................................................................................................................................................................................24130.081000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---AGCAACAAGA---GCAGCAG......................................................................................................................................................................................................................................21130.081000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGC------------------AGCAGC---------------------------A------ACAAC-----------AGTC..............................23140.071000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------AACAACACCAGC-----------AGC----------------A-----------------------------------------ACA........................................................................................................................................................................................................................................................................20150.071000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCATCA----GC------AACAGCA...................................................................................................................................23150.071000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CAACACCAGC-----------AGC----------------A-----------------------------------------ACAGCA.....................................................................................................................................................................................................................................................................20170.061000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA----GC------AACAGCAACAACAG------C.....................................................................................................................21170.061001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CAG------------------CAA---CAG-----------------------------------------------------------------C---------------------------------------------------------------AACAACACC......................................................................................................................................................................................................................................................................................................................................................19190.051000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCA----GC------AACAGCAACA................................................................................................................................23190.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GC-----------AGC----------------A-----------------------------------------ACAGCAGCAGCAAC---AGCAAC....................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCA----GC------AACAGCAAT.................................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGA---GCAGCAGCAACAA................................................................................................................................................................................................................................20200.051000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................ACAGCAGCAAC---------AACAGCAACAA------------C--------------------------A---------GCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000010000000000000000000000000000000000000000000000
......A-----------GCAA-----------------------------------------CAGCAAC------------------A---------ACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAGA---GCAGCAGCAAC..................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................AAC---------AACAGCAACAA------------C--------------------------A---------GCAG---CAG------------------CAA---CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA----GC------AACAGCAACA................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGC-----------AGC----------------A-----------------------------------------ACAGCAGCAGCAAC---A.........................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
....GCA-----------GCAA-----------------------------------------CAGCAAC------------------A---------ACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AGCAACAGCAACA------------ACAGCAGCAAC---------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CAGCAACAGCAACA------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAGCAGCA------------------GC....................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
................................................................AGCAAC------------------A---------ACAGCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................GCAGCAACAGCAACA------------ACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGA---GCAGCAGCAACAAC...............................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CCAGC-----------AGC----------------A-----------------------------------------ACAGCAGCAGC................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GCAGCAAC---------AACAGCAACAA------------C--------------------------A---------GCAG---CC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................AA------------C--------------------------A---------GCAG---CAG------------------CAA---CAG-----------------------------------------------------------------C---------------------------------------------------------------AAC............................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
.....CA-----------GCAA-----------------------------------------CAGCAAC------------------A---------ACAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................AGCAACAA------------C--------------------------A---------GCAG---CAG------------------CAA---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC---AGCAAC....................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCA----GC------AACAGCAACAAC..............................................................................................................................19200.051000000000000010000000000000000000000000000000000000000000000000
........................................................................................A---------ACAGCAGCAGCAACAGCAACA------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.....CA-----------GCAA-----------------------------------------CAGCAAC------------------A---------ACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................GCAGCAGCAACAGCAACA------------ACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
AGCAGCAGCA--ACA---ACAG-----------------------------------------CAGCAGC------------------AGCAACAGCAGCAGCAGCAGCA---------------------ACAGCAGCAGCAGC---------AGCAACAGCAGCAGCAGCAGCAACAGCAG-----------------------TAGCAG---------------------------CAG---CAG---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGC-AG------------C----A---------GC------------------------A-----ACAGCGGC---AGC---AGCAGCAACAGCAACAG---------------------CAGCAGCAGCAGCAACAGC------------A---GCAACAGCAGCAGCAGCAACA----------GC------AGCAGCAGCAGCAACAGCAGCAGCAGCAGC---------------------------------------------------AACAGCAGCAGC-----------AGCAGCA---------ACAGCAGCAGCAACAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---------------------CAGCAGCAGCAGCA......................................................................................................................................................................................................19200.204400000
..................................................................................................GCAGCAGCAGCA---------------------ACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCAGC..................................................................................................................23200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................C-AG------------C----A---------GC------------------------A-----ACAGCGGC---AGC---AGC.......................................................................................................................................................................................................................................................22130.081000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GC------------------------A-----ACAGCGGC---AGC---AGCAGCA...................................................................................................................................................................................................................................................22140.071000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................C----A---------GC------------------------A-----ACAGCGGC---AGC---AGCAGC....................................................................................................................................................................................................................................................22180.061000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------------------------------------AACAGCAGCAGC-----------AGCAGCA---------ACAGC.............27200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC------------A---GCAACAGCAGCAGCA..................................................................................................................................................................22200.051010000
..CAGCAGCA--ACA---ACAG-----------------------------------------CAGCAGC------------------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------A---GCAACAGCAGCAGCAG.................................................................................................................................................................21200.051000100
..........................................................................................................................................................AGCAACAGCAGCAGCAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAG---------------------CAGCAGCAGCA.........................................................................................................................................................................................................22200.051000010
.....................................................................C------------------AGCAACAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GC------------------------A-----ACAGCGGC---AGC---AGCAGC....................................................................................................................................................................................................................................................21200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA----------GC------AGCAGCAGCAGCAACAGC........................................................................................................................27200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAGC---------------------------------------------------AACAGC...................................................27200.051100000
..............A---ACAG-----------------------------------------CAGCAGC------------------AGCAACAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.......................................................................................................................................................................................................................................................G---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGC-AG------------C----A---------GC------------------------A-----ACA........................................................................................................................................................................................................................................................................21200.051100000
........................................................................................AGCAACAGCAGCAGCAGCAGCA---------------------ACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..........................................................................................................AGCA---------------------ACAGCAGCAGCAGC---------AGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
................................................................AGCAGC------------------AGCAACAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAGCAGCAGCAACAGCA19200.051010000
...AGCAGCA--ACA---ACAG-----------------------------------------CAGCAGC------------------AGCAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000010
droGri2
AGCAGCA-----------GCAG-----------------------------------------CAGCGGC------------------A---------GCAGCAGCAGCAGCAGCGGCA------------GCAGCAGCAGC---------GGCAGCAGCAGCAGCAGCAGCAGC--------------------------A---------GCAG---------------CAGCAGCGGCAG---CAG---------------------------------------------------------------------------------------------------------------------------------------------C----------AGCAGCGGCAGCGGCA-GCG-----------------------------------------GCAGCAGC---------AGCAGCAGCA---GCAG---------------CA------------------GCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCA----------GC------AGCAGCAGCAGCAGCAGCAGCAGCAGCAGC---------------------------------------------------AGCAGCAGCATC-----------AGCAGCG---------GCAGCAGCAGCAGCAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---------------------------------------------------AGCAGCAGC................................................19200.25550
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCAGCA..............................................................................................................25200.10220
.........................................................................................................................................................................................................................................CAGCGGCAG---CAG---------------------------------------------------------------------------------------------------------------------------------------------C----------AGCAGCGGC...............................................................................................................................................................................................................................................................................................................................22200.05101
droAna3
AGGAGCG-----------ACGG-----------------------------------------CAGCAGC------------------A---------GCAGCCACAGCAGCAACAG------------------C---A---GC--------------------------------------AGCAGCAAC---------AGCAACAGCAACAGCAACAGCAGCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------GCAGCCACAGC-----------------AGCAGCAACA------G---------------CAGCAACGACAGCAGCAGCAGCAACG------------------------TCAGCAGCAGCAGCAA--CGAC--AACAACAG------CA---AGCAGTGCAGCAACAGC---------------------------------------------------ATCATGTGGAGC-----------AGCAACA---------G-----ACGGGGAGCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................AC------------------AGC--------------AG------------C----A------------------------------GCAGCCACAGC-----------------..........................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................C---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------GCAGCCAC..............................................................................................................................................................................................................................................................................2220.501010000
...............................................................................................................................................................................................................................GCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------GC....................................................................................................................................................................................................................................................................................2960.171010000
.................................................................................................................................................................................................................................................................................................................................................................................................................G------------C----A------------------------------GCAGCCACAGC-----------------AGCAGC....................................................................................................................................................................................................................................................2070.141010000
........................................................................................................................................................................................................................................................................................................................GC---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------GCAGCC................................................................................................................................................................................................................................................................................21160.132011000
.................................................................GCAGC------------------A---------GCAGCCACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131000001
................................................................................................................................................................................................................................................................................................................................................................................................GC--------------AG------------C----A------------------------------GCAGCCACAGC-----------------AGC.......................................................................................................................................................................................................................................................2080.131000001
.............................................................................................................AGCAACAG------------------C---A---GC--------------------------------------AGCAGCAAC---------AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102011000
................................................................................................................................................................................................................................CAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------......................................................................................................................................................................................................................................................................................26130.081010000
....................................................................................................................................................................................................................CAGCAACAGCAGCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................26130.081010000
................................................................................................................................................................................................................GCAACAGCAACAGCAGCAGCAA---------CAG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.071010000
............................................................................................................................................................................................................AACAGCAACAGCAACAGCAGCAGCAA---------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.071000001
.......................................................................................................................................................................................................................CAACAGCAGCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGC..............................................................................................................................................................................................................................................................................................................................................................................25200.051010000
............................................................................................................................................................................................CAAC---------AGCAACAGCAACAGCAACAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
...................................................................................................................AG------------------C---A---GC--------------------------------------AGCAGCAAC---------AGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
...............................................................................................................................................................................................................................GCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------AG------------A----.....................................................................................................................................................................................................................................................................................................................26200.051100000
..............................................................................................................................................................................................................CAGCAACAGCAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.................................................................................................................................................................................................................CAACAGCAACAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAA---------CAG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................AGCAAC------------------AGC--------------AG------------C----A------------------------------GCAGCC................................................................................................................................................................................................................................................................................19200.051000001
.........................................................................................................................................................................................................AGCAACAGCAACAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.................................................................................................................................................................................................................................AGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------A........................................................................................................................................................................................................................................................................................................................................................19200.051010000
..............................................................................................................................................................................................AC---------AGCAACAGCAACAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................CAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------AG------------C----A------------------------------GC....................................................................................................................................................................................................................................................................................25200.051010000
....................................................................................................................................................................................................................................AA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------A.......................................................................................................................................................................................................................................................................................................................................19200.051000001
...............................................................................................................................................................................................................................GCAGCAA---------CAG---CA-----------------------------------------------------------------GC---------------------------------------------AGCAAC------------------AGC--------------........................................................................................................................................................................................................................................................................................................................................23200.051010000
droBip1
TGCTGCA-----------GCGG-----------------------------------------CGGCGGC------------------A---------GCAGCAGCGGCAGCAGCC-------------------------------CAGCAACAGCAGC-----------------------TGCAGCAAC---------AGCACCAGCAGCAGCAACACCAGCAGCAA---------CAA---CA-----------------------------------------------------------------GC---------------------------------------------------------------AGCAACATCAG--------------------------C-------------TGCA-----------------------------ACAGCACCAGCAAC---AGT------------------------------T------------------ACAACA---------------CC---------AGCAGCAGCA----------GC------AACAGCAACAGCACCTGCACCAGCAACAGC---------------------------------------------------TTCAGCCGCACCAGCA--GC---AAATGCA---------ACACCACCAGCAGCAACASizeHit CountTotal NormTotal
No Reads
droKik1
AGCAACA-----------TGTGGCTGCTGT---------------------------------TA--TGCAGCAGCAACAGCAACACCA---------GCAACAGCAGCAGCACTCACA---------------TC---------------A---------C---------GCCC--------------AAC---------AGCAGCATGCACAGCAACAGCA-----------------------------------------------------------------------------------------TCATGGCCATTCATTGCATCCGCACCACACACATCAGCAGCAA---CAACAAC-----------------------------------------------------------------------------------------------------------------AGCAGCAGCA------G---------------CAGCAACAACA---------CCACC---------------------------AGCAGCAG-------------------------------CAT------CAGCAGCAACATGCACAGCAACAGCAGCAGCAGCAACACCATGC------------------------CGC--------------------------------CCAGCTGGCCCACACSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAGC--A--------ACAA-----------------------------------------CTGCAAC------------------A---------GCAGCAGCAGCAACTACTGCAACA---------ACAGC---AAC---------AACTGCAACAG------------C--------------------------A---------GCAG---------------CAGCAACAGCAGCAACAG--------------------------------------------------------------------------------------------------------------------------------------CACCAGC-----------AGC----------------A-----------------------------------------ACAACTGCAGCAGC---AGCAACAGCA---GCAACAGCAGC---------AGC------A------GCACCAGC------------AGCAACTGCAGCAGCAGCAACAGCA----------GC------AGCAACAGCAGCAACAATTGCAACAGCAGC---------------------------------------------------AACCCTTGCAAC-----------AGCAACA---------GCAGCCACAAGTGCAACASizeHit CountTotal NormTotal
No Reads
droEle1
AGCAGCG-----------GCCT-----------------------------------------AGGCAAT------ATA---------A---------GCCACGGCTGCAATATCA------------------GCAGCAGC------------AATTGCAA---------CCAC--------------------------T---------GCTG---CAG------------------CAG---CAG-----------------------------------------------------------------C------------------------------------------A---A------------------CAGCAGC----AG-------CAAGAGCAA------CA-GCAACAACAGCAGCAA---GAGCA--------------------ACAGCAAC------------------A------A---------------------CAGCAGCAACAGCAGCAGCA------------------------GCAGCAACAACAGCAG--CAAC--AACAACAG------CAGACA------CAACAGCAGC---------------------------------------------------AACAACAACAGC-----------AGCAGCA---------GCAACAACAGCAGCAGCCSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAGCA-----------GCCG-----------------------------------------AATCAGC------------------A---------GCAGCAGCAGAAACAACAGCA---------------GC---A---AAAACAG-----------------------------------------------------------------------------------------------------------------ACAAAACCAACAGCAACGTCTGCAACAGCA-------------------------------------------------------------GCAACAACAGCAGCAGCAACATCAACAACAACGT--------------------------A-------------TTCA-----------------------------ACAGCAGC------------------------------------------AGCAACATCA---------ACAACA---------------ACG------TGTGCAGCAGCA----------GC------AACAACAGCAGCAACGTATGCAACAGCAGC---------------------------------------------------AACAAAACAACC-----------AGCAACA---TCAGAGAGAACGACAG--------SizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGAA-----------GCAG-----------------------------------------AAGGAGC------------------A---------GCAGCAACCACAACAGCGGCA---------------ACACCAGC------AGCAGCAACAGCAG---------AAAC--------------------------A---------ACAG------------------------CAACATCAG--------------------------------------------------------------------------------------------------------------------------------------CCACAGC-----------AGC----------------A-----------------------------------------GCAATAGCAACAAA---AGCAACAAAA---GCAACAACAG---------CAGCAACAGCA---------GCAACA---------------ACA------GCAGCAACAGCA----------CC------AGCAACAACAGCAACTACACCAGCGACAAC---------------------------------------------------AGCAACTACACC-----------AGCAACA---------ACAGCAACTACACCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
GGCAGCA-----------ACAG-----------------------------------------CTACGGT------------------A---------GCAACAACCACAGTCGCAACA---------------AC---C---AAGGCAGCAACAACCACAG---------CGGCGACAACCA-----------------------AG---GCAG------------------------CAACAACAA--------------------------------------------------------------------------------------------------------------------------------------CCACTGC-----------AGC----------------A-----------------------------------------ACAACCACAGCGGC---AACTACTAAG---GCTGCAACAAC---------AAC---------CACCGCAGCAACA---------------ACAACCACCGCCGCAACAACA----------AC------CACAGCGGCAACTACTAAGGCTGCAACAAC---------------------------------------------------AACTACCGCAGC-----------AACAACA---------AACACCGCAGCAACAACASizeHit CountTotal NormTotal
No Reads
droEug1
AACCGCA-----------ACAG-----------------------------------------CAGCACC------------------T---------GCACCAGCAGCAGCATCAACA---------------CC-----------------------------------------------AACAACAAC---------AGCAACAGCAACAGCAACATCAGCAGCAT---------CAG---CA-----------------------------------------------------------------AC---------------------------------------------ACCA------------------------A-CAAC-------ATCAGCAA-------------------------------------------CACCAACAAC-----------------ATCA------------G---------------CAACACCA---------------------------------AC---------AACATCAG-------------------------------CAACATCAACAACATCTGC------ACCAACAGCAGCAGCAGCAACAACAGGCCAACTTTCTCCACATTCAGCAATCGCTCCAACATAACC--ACCAACTAAACCAC---------C--CAGAACCASizeHit CountTotal NormTotal
No Reads
dm3
AGCAGAC--GGCGCA---AATG-----------------------------------------ATGCAAA------------------TGCCGTACCAGCAGCAACCACAACAGCAAC---------------------AACAGA---------TGCAGCAACAATTGATGATGCAACAGCAG-----------------------CAGAGA---------------------------CAG---CAA---------------------------------------------------------------------------------------------------------------------------------------------CAATTGCCGC-AG------------A----T---------GC------------------------A-----ACAGCGCC---AGC---AGCAACATTT------G---------------CAACGACAACTGCAACTGCAGCAACA---------------GC---------AGCAGCAGCAGCAA--CAAC--AACAGTTG------CAGATC------GTCCAGCGCC---------------------------------------------------AGCAGCAGCAAC-----------AGCAGTC---------ACAACTGCAAGTCCAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................AGA---------TGCAGCAACAATTGATGATGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TGCAGCAACAATTGATGATGCAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTG------CAGATC------GTCCAGCGCC---------------------------------------------------AGC......................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAC---------------------AACAGA---------TGCAGCAACAATTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------CAGATC------GTCCAGCGCC---------------------------------------------------AGCAGC...................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGATC------GTCCAGCGCC---------------------------------------------------AGC......................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTG------CAGATC------GTCCAGCG..............................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................G-----------------------CAGAGA---------------------------CAG---CAA---------------------------------------------------------------------------------------------------------------------------------------------CAATTGCC...........................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAAC--AACAGTTG------CAGATC------GTCC..................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTTG------CAGATC------GTCCAGC...............................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AACAGTTG------CAGATC------GTCCAG................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CAAC--AACAGTTG------CAGATC------GTCCAGC...............................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AACAGCAAC---------------------AACAGA---------TGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACAGCAAC---------------------AACAGA---------TGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAG---CAA---------------------------------------------------------------------------------------------------------------------------------------------CAATTGCCGC-AG------------A----T---------GC------------------------A-----ACA........................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--AACAGTTG------CAGATC------GTCCAGCGCC---------------------------------------------------A........................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTG------CAGATC------GTCCAGCGCC---------------------------------------------------AG.......................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAA---------------------------------------------------------------------------------------------------------------------------------------------CAATTGCCGC-AG------------A----T---------GC------------------------A-----AC.........................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACAGCAAC---------------------AACAGA---------TGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------CAGATC------GTCCAGCGCC---------------------------------------------------AGCAGCAGC................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--AACAGTTG------CAGATC------GTCCAGCG..............................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AGAGA---------------------------CAG---CAA---------------------------------------------------------------------------------------------------------------------------------------------CAATTGCCGC-AG------------A----T---------GC------------------------.................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................C---------------------AACAGA---------TGCAGCAACAATTGATGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC--AACAGTTG------CAGATC------GTCCA.................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ACAGA---------TGCAGCAACAATTGATGATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTG------CAGATC------GTCCAGCGCC---------------------------------------------------AGCAGC...................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................ATTGATGATGCAACAGCAG-----------------------CAGAGA---------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT------G---------------CAACGACAACTGCAACTGCAGC....................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTTG------CAGATC------GTCCAG................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC--AACAGTTG------CAGATC------GTCCAGC...............................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GC-AG------------A----T---------GC------------------------A-----ACAGCGCC---A...............................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
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Head		M024
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Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
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Female-body		V113
Male-body		V114
Embryo		V115
Head
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAGCA------G---------------GAGCAGCATC................................................................................................................................................................................................................2011.0010001
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCATC---------------------------------------------------.........................................................18150.0710010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGCA..............................................................................................................20200.0510100
droYak3
ACCAGAT-----------GATACTCAATGC---------------------------------CAGC--CA---------------------------CCAGCAGCAGCAGCAGCA------------------ACAGCAGC-----------------------------------------CGCAGCAAC----------------------------------------------------------------------------------------ATCCGCAACAGCA-------------------------------------------------------------GCAGCAG---------------------CACCAA-CAGC-------AGCAGCAA------CACGTGGCACACGGAAAGA---AGGCAGCCA-GAAAACACCAGCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------ACA------GCAGCAGCAACA----------GC------------AACAGCA---------------------------GCAGCAGCAGCAGCAACAACAGACCAG--------------------TGCGC-------------------------------CTATGTACAATAACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------AC...............................................................................................................................................................................2160.67401000030000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------AC...............................................................................................................................................................................2060.50302000010000
........................................................................................................................................................................................GCAGCAAC----------------------------------------------------------------------------------------ATCCGCAACAGCA-------------------------------------------------------------GCAGC.................................................................................................................................................................................................................................................................................................................................................................................2620.50100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------A................................................................................................................................................................................2070.43302000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------AC...............................................................................................................................................................................2260.33201000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------ACA------........................................................................................................................................................................2160.17101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------ACA------........................................................................................................................................................................2360.17100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------AC...............................................................................................................................................................................1970.14101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----------------ATC------T------G---------------CAGCAGCA---------------------------------A................................................................................................................................................................................1970.14101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------ATC------T------G---------------CAGCAGC...................................................................................................................................................................................................................18110.09101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACA----------GC------------AACAGCA---------------------------GCAGCA............................................................................................27200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------GC------------AACAGCA---------------------------GCAGCAGCAGCA......................................................................................24200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA----------GC------------AACAGCA---------------------------GCAGCAGCAGCA......................................................................................27200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA----------GC------------AACAGCA---------------------------GCAGCAGCAGCAG.....................................................................................26200.05101000000000
droEre2
AGCAGCC-----------GCAG-----------------------------------------CAACATC------------------C---------GCAACAGCAGCCGCACCAGCA------------TCCGCAACAGT---------CGCAGCAACAT------------------CCG-----------------CA---------GCAT------------------------CAGCAACAT-----------------------------------------------------------------------------------------------------------------------------------CCGCAACAGC-----------AGC----------------C-----------------------------------------ACAACAGCAGCCAC---ACCAGCAGCC---GCACCAGCATC---------CGCATCATCA---------GCCGCA---------------ACA------GTCGCAGCAACA----------GC------CGCAACAGCAGCAACATCCGCAACAGCAGC---------------------------------------------------CGCAACCACATC-----------CGCATCA---------TCAGCCGCAGCAGCATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCA---------TCAGCCGCAGCAGCA...2111.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------CGCATCA---------TCAGCCGCAGCAGCATCC2611.0010100000

Generated: 06/08/2015 at 05:13 PM