ID:

dpe_2119

 Coordinate:

scaffold_824:7834-7984 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.8 -17.8

Flybase annnotation

CDS [Dper\GL22917-cds]; exon [dper_GLEANR_517:1]; intron [Dper\GL22917-in]

No Repeatable elements found

mature
  1. scaffold_18:646472-646492 -
  2. scaffold_18:654875-654895 -
  3. scaffold_824:2367-2387 -
  4. dpe_2119  scaffold_824:7873-7893 -
star
  1. scaffold_18:646552-646571 -
  2. scaffold_18:654955-654974 -
  3. scaffold_824:2447-2466 -
  4. dpe_2119  scaffold_824:7953-7972 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCTCTTTTCCGTTCAGTTTCTGGAGGTGCACCCTGCACCGTTGTACTATGGTAAGAATAATAATTTAAGAATCTAATAAGAATTTCATAATCTCTGCGGACCTTCTCTCGCAGTGCATACAGTTCCCCATGGTTATCACGAAGCAGACCGGTCTGGGACTAGGATCAGGGGGTATAGCAGTCTTCTATACCATTTCTTGACCATCGATCCATCGCTGGTACTCTGATTCATATGGAGGTCACGTGGCAGCG
**************************************************************...............................((((((........)))))).......((((((...(((((...........)))))....))))))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V050
head
 V057
head
.............................................................................................................................................AGCAGACCGGTCTGGGACTAG......................................................................................... 21 0 4 5.25 21 21 0 0 0
.............................................................................................................................................AGCAGACCGGTCTGGGACTA.......................................................................................... 20 0 4 4.75 19 19 0 0 0
................................................................................................................................................AGACCGGTCTGGGACTAGGA....................................................................................... 20 0 4 3.50 14 14 0 0 0
................................................................................................................................................AGACCGGTCTGGGACTAGG........................................................................................ 19 0 4 3.00 12 12 0 0 0
......................................................................................................................................ATCACGAAGCAGACCGGTCTG................................................................................................ 21 0 4 2.75 11 11 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGACTAG......................................................................................... 22 0 4 2.25 9 9 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGAC............................................................................................ 20 0 4 2.25 9 9 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGGGG................................................................................ 20 0 4 2.00 8 8 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTC..................................................................... 20 0 3 2.00 6 6 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGAC............................................................................................ 19 0 4 1.75 7 7 0 0 0
...........................................................................................................................................................GGACTAGGATCAGGGGGTATA........................................................................... 21 0 3 1.67 5 5 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCT.................................................................... 21 0 3 1.67 5 5 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGACTA.......................................................................................... 21 0 4 1.50 6 6 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGGG................................................................................. 19 0 4 1.50 6 6 0 0 0
.............................................................................................................................................AGCAGACCGGTCTGGGACT........................................................................................... 19 0 4 1.50 6 6 0 0 0
.................................................................................................................................................GACCGGTCTGGGACTAGGATC..................................................................................... 21 0 4 1.25 5 5 0 0 0
...........................................................................................................................................................GGACTAGGATCAGGGGGTA............................................................................. 19 0 3 1.00 3 3 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTC................................................................... 22 1 3 1.00 3 3 0 0 0
...................................................................................................................................................CCGGTCTGGGACTAGGATCAG................................................................................... 21 0 4 0.75 3 2 1 0 0
.................................................................................................................................................GACCGGTCTGGGACTAGGA....................................................................................... 19 0 4 0.75 3 3 0 0 0
...........................................................................................................................................................GGACTAGGATCAGGGGGTAT............................................................................ 20 0 3 0.67 2 2 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTT................................................................... 22 0 3 0.67 2 2 0 0 0
..........................................................................................................................................................GGGACTAGGATCAGGGGGTAT............................................................................ 21 0 3 0.67 2 2 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGACT........................................................................................... 21 0 4 0.50 2 2 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGACT........................................................................................... 20 0 4 0.50 2 2 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGG.................................................................................. 18 0 4 0.50 2 1 0 1 0
................................................................................................................................................AGACCGGTCTGGGACTAGGAT...................................................................................... 21 0 4 0.50 2 2 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGGGGG............................................................................... 21 0 4 0.50 2 2 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGACTA.......................................................................................... 22 0 4 0.50 2 2 0 0 0
...................................................................................................................................................CCGGTCTGGGACTAGGATCA.................................................................................... 20 0 4 0.50 2 2 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGACTTT......................................................................................... 22 2 4 0.50 2 2 0 0 0
.............................................................................................................................CCCATGGTTATCACGAAGCAGA........................................................................................................ 22 0 4 0.50 2 2 0 0 0
..................................................................................................................................................ACCGGTCTGGGACTAGGATC..................................................................................... 20 0 4 0.50 2 2 0 0 0
...................................................................................................................................................CCGGTCTGGGACTAGGATCAGG.................................................................................. 22 0 4 0.50 2 2 0 0 0
....................................................................................................................................................CGGTCTGGGACTAGGATCAGG.................................................................................. 21 0 4 0.50 2 2 0 0 0
................................................................................................................................................AGACCGGTCTGGGACTAGGATC..................................................................................... 22 0 4 0.50 2 2 0 0 0
............................................................................................................................................................GACTAGGATCAGGGGGTATA........................................................................... 20 0 3 0.33 1 1 0 0 0
..........................................................................................................................................................GGGACTAGGATCAGGGGGTATA........................................................................... 22 0 3 0.33 1 1 0 0 0
...........................................................................................................................................................GGACTAGGATCAGGGGGTAA............................................................................ 20 1 3 0.33 1 1 0 0 0
...........................................................................................................................................................GGACTAGGATCAGGGGGTATT........................................................................... 21 1 3 0.33 1 1 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGGGGTT.............................................................................. 22 1 3 0.33 1 1 0 0 0
..................................................................................................................................................................GATCATGGGGTATAGCAGTCTTC.................................................................. 23 1 3 0.33 1 1 0 0 0
................................................................................................................................................................AGGATCAGGGGGTATAGCA........................................................................ 19 0 3 0.33 1 1 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTTTTT................................................................ 25 2 3 0.33 1 1 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCC.................................................................... 21 1 3 0.33 1 1 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTTCTA................................................................ 25 0 3 0.33 1 1 0 0 0
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTTT.................................................................. 23 1 3 0.33 1 1 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGACTT.......................................................................................... 21 1 4 0.25 1 1 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGACTAA......................................................................................... 23 1 4 0.25 1 1 0 0 0
...............................................................................................................................................CAGACCGGTCTGGGACTAGG........................................................................................ 20 0 4 0.25 1 1 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGAT............................................................................................ 20 1 4 0.25 1 1 0 0 0
.......................................................................................................................................................TCCGGGACTAGGATCAGGGG................................................................................ 20 1 4 0.25 1 1 0 0 0
.......................................................................................................................................................TCTGGTACTAGGATCAGGG................................................................................. 19 1 4 0.25 1 1 0 0 0
..........................................................................................................................................................GGGACTAGGATCAGGGGG............................................................................... 18 0 4 0.25 1 1 0 0 0
.............................................................................................................................................AGCAGACCGGTCTGGGAC............................................................................................ 18 0 4 0.25 1 1 0 0 0
......................................................................................................................................ATCACGAAGCAGACCGGTCTGGGACTAG......................................................................................... 28 0 4 0.25 1 1 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGAATC.......................................................................................... 22 2 4 0.25 1 1 0 0 0
.............................................................................................................................................AGCAGACCGGTCTGGGACTAGGA....................................................................................... 23 0 4 0.25 1 1 0 0 0
........................................................................................................................................CACGAAGCAGACCGGTCTGGG.............................................................................................. 21 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................GGTCTGGGACTAGGATCAGG.................................................................................. 20 0 4 0.25 1 1 0 0 0
.....................................................................................................................................TATCACGAAGCAGACCGGTCTGGGACA........................................................................................... 27 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................GGTCTGGGACTAGGATCAGGG................................................................................. 21 0 4 0.25 1 1 0 0 0
........................................................................................................................................CACGAAGCAGACCGGTCTGGGACTA.......................................................................................... 25 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGGGTTT.............................................................................. 22 2 4 0.25 1 1 0 0 0
.............................................................................................................................................AGCAGACCGGCCTGGGACT........................................................................................... 19 1 4 0.25 1 1 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGG.............................................................................................. 18 0 4 0.25 1 1 0 0 0
..............................................................ATTTAAGAATCTAATAAGAA......................................................................................................................................................................... 20 0 4 0.25 1 0 1 0 0
.............................................................................................................................................AGCAGACCGGCCTTGGACTAG......................................................................................... 21 2 4 0.25 1 1 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGA............................................................................................. 19 0 4 0.25 1 1 0 0 0
...........................................................................................................................................GAAGCAGACCGGTCTGGGACTAG......................................................................................... 23 0 4 0.25 1 1 0 0 0
......................................................................................................................................................GTCTGGGACTAGGATCAGGGG................................................................................ 21 0 4 0.25 1 1 0 0 0
............................................................................................................................................AAGCAGACCGGTCTGGGACTAA......................................................................................... 22 1 4 0.25 1 1 0 0 0
.................................................................................................................................................GACCGGTCTGGGACTAGGAT...................................................................................... 20 0 4 0.25 1 1 0 0 0
......................................................................................................................................ATCACGAAGCAGACCGGTCT................................................................................................. 20 0 4 0.25 1 1 0 0 0
.......................................................................................................................................TCACGAAGCAGACCGGTCT................................................................................................. 19 0 4 0.25 1 0 1 0 0
......................................................................................................................................ATCACGAAGCAAACCGGTCTG................................................................................................ 21 1 4 0.25 1 1 0 0 0
.............................................................................................................................................AGCATACCGGTCTGGGACTAG......................................................................................... 21 1 4 0.25 1 1 0 0 0
.......................................................................................................................................................TCTGGGACTAGGATCAGGGTT............................................................................... 21 2 6 0.17 1 1 0 0 0
........................................................................................AATCTCGGCGGACCCTCCC................................................................................................................................................ 19 3 13 0.08 1 0 0 1 0
.......................................................AATGACACTTTAAGAATCTA................................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 1

Anti-sense strand reads

CGAGAAAAGGCAAGTCAAAGACCTCCACGTGGGACGTGGCAACATGATACCATTCTTATTATTAAATTCTTAGATTATTCTTAAAGTATTAGAGACGCCTGGAAGAGAGCGTCACGTATGTCAAGGGGTACCAATAGTGCTTCGTCTGGCCAGACCCTGATCCTAGTCCCCCATATCGTCAGAAGATATGGTAAAGAACTGGTAGCTAGGTAGCGACCATGAGACTAAGTATACCTCCAGTGCACCGTCGC
*****************************************************************************************...............................((((((........)))))).......((((((...(((((...........)))))....))))))..************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V111
male body		 V057
head
......................................................................................................................TGTCAAGGGGTACCAATAGT................................................................................................................. 20 0 4 0.25 1 1 0 0
...........................................................................................................AGCGTCACGTATGTCAAGGG............................................................................................................................ 20 0 4 0.25 1 0 1 0
.........................................................................................................................................................................................................................................CGTCCAGTGCATCGTCGC 18 2 9 0.11 1 1 0 0
.................................................................................................................ACGAATGTCAAGGGGCAACA...................................................................................................................... 20 3 11 0.09 1 0 0 1
.............................................................................................................................GGTTACCAATAGGGCTTC............................................................................................................ 18 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_824:7784-8034 - dpe_2119 GCTCTTTTCCGTTCAGTTTCTGGAGGTGCACCCTGCACCGTTGTACTATGGTAAGAATAATAATTTAAGAATCTAATAAGAATTTCATAATCTCTGCGGACCTTCTCTCGCAGTGCATACAGTTCCCCATGGTTATCACGAAGCAGACCGGTCTGGGACTAGGATCAGGGGGTATAGCAGTCTTC-TATACCATTTCTTGACCATCGATCCATCGCTGGTACTCTGATTCATATGGAGGTCACGTGGCAGCG
dp5 XL_group1e:1803812-1803940 - TCTT----------------TAAAAATATGTCATATTTTTTTTTATG----GACTAGTTTTCCTTAAAAAATTTTGTAAAT---CTATTATTTTTATTTACTTTTTTTTAGAGGTTGTGCT--------TCTTTTTCACAAAACTTAACTATTTCACGC--------------------------------------------------------------------------------------------C
droKik1 scf7180000302344:95077-95174 + CCAT----------------CGAGGCCATGCCCACGCT-------------------------------------------------------------------------------------------AGATGATGAGGTCCTTGGCCAGTTAGTCGGTGAGTTGGAGGAGTGTCCTCGCTTTTTAATAGCATTTTAT--T---------------------------------------------TACTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCTCTTTTCCGTTCAGTTTCTGGAGGTGCACCCTGCACCGTTGTACTATGGTAAGAATAATAATTTAAGAATCTAATAAGAATTTCATAATCTCTGCGGACCTTCTCTCGCAGTGCATACAGTTCCCCATGGTTATCACGAAGCAGACCGGTCTGGGACTAGGATCAGGGGGTATAGCAGTCTTC-TATACCATTTCTTGACCATCGATCCATCGCTGGTACTCTGATTCATATGGAGGTCACGTGGCAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................AGCAGACCGGTCTGGGACTAG..........................................................................................2145.25210000021
.............................................................................................................................................AGCAGACCGGTCTGGGACTA...........................................................................................2044.75190000019
................................................................................................................................................AGACCGGTCTGGGACTAGGA........................................................................................2043.50140000014
................................................................................................................................................AGACCGGTCTGGGACTAGG.........................................................................................1943.00120000012
......................................................................................................................................ATCACGAAGCAGACCGGTCTG.................................................................................................2142.75110000011
............................................................................................................................................AAGCAGACCGGTCTGGGACTAG..........................................................................................2242.259000009
...........................................................................................................................................GAAGCAGACCGGTCTGGGAC.............................................................................................2042.259000009
.......................................................................................................................................................TCTGGGACTAGGATCAGGGG.................................................................................2042.008000008
..................................................................................................................................................................GATCAGGGGGTATAGCAGTC......................................................................2032.006000006
............................................................................................................................................AAGCAGACCGGTCTGGGAC.............................................................................................1941.757000007
...........................................................................................................................................................GGACTAGGATCAGGGGGTATA............................................................................2131.675000005
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCT.....................................................................2131.675000005
............................................................................................................................................AAGCAGACCGGTCTGGGACTA...........................................................................................2141.506000006
.......................................................................................................................................................TCTGGGACTAGGATCAGGG..................................................................................1941.506000006
.............................................................................................................................................AGCAGACCGGTCTGGGACT............................................................................................1941.506000006
.................................................................................................................................................GACCGGTCTGGGACTAGGATC......................................................................................2141.255000005
...........................................................................................................................................................GGACTAGGATCAGGGGGTA..............................................................................1931.003000003
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTC....................................................................2231.003000003
...................................................................................................................................................CCGGTCTGGGACTAGGATCAG....................................................................................2140.753010002
.................................................................................................................................................GACCGGTCTGGGACTAGGA........................................................................................1940.753000003
...........................................................................................................................................................GGACTAGGATCAGGGGGTAT.............................................................................2030.672000002
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTT....................................................................2230.672000002
..........................................................................................................................................................GGGACTAGGATCAGGGGGTAT.............................................................................2130.672000002
...........................................................................................................................................GAAGCAGACCGGTCTGGGACT............................................................................................2140.502000002
............................................................................................................................................AAGCAGACCGGTCTGGGACT............................................................................................2040.502000002
.......................................................................................................................................................TCTGGGACTAGGATCAGG...................................................................................1840.502000101
................................................................................................................................................AGACCGGTCTGGGACTAGGAT.......................................................................................2140.502000002
.......................................................................................................................................................TCTGGGACTAGGATCAGGGGG................................................................................2140.502000002
...........................................................................................................................................GAAGCAGACCGGTCTGGGACTA...........................................................................................2240.502000002
...................................................................................................................................................CCGGTCTGGGACTAGGATCA.....................................................................................2040.502000002
............................................................................................................................................AAGCAGACCGGTCTGGGACTTT..........................................................................................2240.502000002
.............................................................................................................................CCCATGGTTATCACGAAGCAGA.........................................................................................................2240.502000002
..................................................................................................................................................ACCGGTCTGGGACTAGGATC......................................................................................2040.502000002
...................................................................................................................................................CCGGTCTGGGACTAGGATCAGG...................................................................................2240.502000002
....................................................................................................................................................CGGTCTGGGACTAGGATCAGG...................................................................................2140.502000002
................................................................................................................................................AGACCGGTCTGGGACTAGGATC......................................................................................2240.502000002
............................................................................................................................................................GACTAGGATCAGGGGGTATA............................................................................2030.331000001
..........................................................................................................................................................GGGACTAGGATCAGGGGGTATA............................................................................2230.331000001
...........................................................................................................................................................GGACTAGGATCAGGGGGTAA.............................................................................2030.331000001
...........................................................................................................................................................GGACTAGGATCAGGGGGTATT............................................................................2130.331000001
................................................................................................................................................................AGGATCAGGGGGTATAGCA.........................................................................1930.331000001
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCC.....................................................................2130.331000001
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTTC-TA................................................................2530.331000001
..................................................................................................................................................................GATCAGGGGGTATAGCAGTCTTT-..................................................................2330.331000001
............................................................................................................................................AAGCAGACCGGTCTGGGACTT...........................................................................................2140.251000001
...........................................................................................................................................GAAGCAGACCGGTCTGGGACTAA..........................................................................................2340.251000001
...............................................................................................................................................CAGACCGGTCTGGGACTAGG.........................................................................................2040.251000001
...........................................................................................................................................GAAGCAGACCGGTCTGGGAT.............................................................................................2040.251000001
..........................................................................................................................................................GGGACTAGGATCAGGGGG................................................................................1840.251000001
.............................................................................................................................................AGCAGACCGGTCTGGGAC.............................................................................................1840.251000001
......................................................................................................................................ATCACGAAGCAGACCGGTCTGGGACTAG..........................................................................................2840.251000001
.............................................................................................................................................AGCAGACCGGTCTGGGACTAGGA........................................................................................2340.251000001
........................................................................................................................................CACGAAGCAGACCGGTCTGGG...............................................................................................2140.251000001
.....................................................................................................................................................GGTCTGGGACTAGGATCAGG...................................................................................2040.251000001
.....................................................................................................................................TATCACGAAGCAGACCGGTCTGGGACA............................................................................................2740.251000001
.....................................................................................................................................................GGTCTGGGACTAGGATCAGGG..................................................................................2140.251000001
........................................................................................................................................CACGAAGCAGACCGGTCTGGGACTA...........................................................................................2540.251000001
...........................................................................................................................................GAAGCAGACCGGTCTGGG...............................................................................................1840.251000001
..............................................................ATTTAAGAATCTAATAAGAA..........................................................................................................................................................................2040.251010000
...........................................................................................................................................GAAGCAGACCGGTCTGGGA..............................................................................................1940.251000001
...........................................................................................................................................GAAGCAGACCGGTCTGGGACTAG..........................................................................................2340.251000001
......................................................................................................................................................GTCTGGGACTAGGATCAGGGG.................................................................................2140.251000001
............................................................................................................................................AAGCAGACCGGTCTGGGACTAA..........................................................................................2240.251000001
.................................................................................................................................................GACCGGTCTGGGACTAGGAT.......................................................................................2040.251000001
......................................................................................................................................ATCACGAAGCAGACCGGTCT..................................................................................................2040.251000001
.......................................................................................................................................TCACGAAGCAGACCGGTCT..................................................................................................1940.251010000
.......................................................................................................................................................TCTGGGACTAGGATCAGGGTT................................................................................2160.171000001
dp5
TCTT----------------TAAAAATATGTCATATTTTTTTTTATG----GACTAGTTTTCCTTAAAAAATTTTGTAAAT---CTATTATTTTTATTTACTTTTTTTTAGAGGTTGTGCT--------TCTTTTTCACAAAACTTAACTATTTCACGC--------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droKik1
CCAT----------------CGAGGCCATGCCCACGCT-------------------------------------------------------------------------------------------AGATGATGAGGTCCTTGGCCAGTTAGTCGGTGAGTTGGAGGAGTGTCCTCGCTTTTTAATAGCATTTTAT--T---------------------------------------------TACTGSizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 05:15 PM