ID:

dpe_2106

 Coordinate:

scaffold_8:3415081-3415231 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL16384-cds]; exon [dper_GLEANR_1805:1]; intron [Dper\GL16384-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCGCATCGGTGACCGCGGGAACGCAAGTGTTACTCCTAGCAACCCGAGGGTGCGACCTGCTAAATAGAAAGGAAGAGTTTTATAAAGTAACACTCCTTTAATGATATGCAAATATTCGGAAGGCTATATCTCAGATAAATAGGACCAGATCGGTGAAGGACCAACTCTCCAGACTGTCGACTATGAAAATGAGGCCAATTTTTGGCATATTTAATGATGATTTTTTGCGAAAATCGTGAAAAAATGGATG
**************************************************...(((..(((.......(((((.((.(((.........))).)))))))........))).....)))...(((.....((((.....((((.....((.((((...(((.......)))..))))))..)))).....)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 V057
head
 M021
embryo
........................................................................................................................................................................................................TTTGGGCATATTTCATGTTGAT............................. 22 3 7 0.14 1 0 1 0
..................................................................................................................................................................................................................................TGCGAAAATCGTGAAAAAATGGATG 25 0 20 0.10 2 2 0 0
................................................................................................................................................ACCAGGTCGGTGAAGGAC......................................................................................... 18 1 20 0.05 1 0 0 1
..................................................................................................................................................................................................................................TGCGAAAATCGTGAAAAAATGG... 22 0 20 0.05 1 1 0 0

Anti-sense strand reads

TCGCGTAGCCACTGGCGCCCTTGCGTTCACAATGAGGATCGTTGGGCTCCCACGCTGGACGATTTATCTTTCCTTCTCAAAATATTTCATTGTGAGGAAATTACTATACGTTTATAAGCCTTCCGATATAGAGTCTATTTATCCTGGTCTAGCCACTTCCTGGTTGAGAGGTCTGACAGCTGATACTTTTACTCCGGTTAAAAACCGTATAAATTACTACTAAAAAACGCTTTTAGCACTTTTTTACCTAC
**************************************************...(((..(((.......(((((.((.(((.........))).)))))))........))).....)))...(((.....((((.....((((.....((.((((...(((.......)))..))))))..)))).....)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V057
head
..........................................................................................................................................ATATCCTGGTCTAGCCAGTTCCTGGT....................................................................................... 26 2 3 0.33 1 1 0
................................................................................................................................................................TGGTCGAGTGGTCTGACGGC....................................................................... 20 3 8 0.13 1 0 1
........................................................................................................................TTCCGTTGTAGAGGCTATTT............................................................................................................... 20 3 20 0.05 1 0 1
...................................................................................................................................................................................................................................CGCTTTTAGCACTTTTTTACCTA. 23 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_8:3415031-3415281 + dpe_2106 AGCGCATCGGTGACCGCGGGAACGCAAGTGTTACTCCTAGCAACCCGAGGGTGCGACCTGCTAAATAGAAAGGAAGAGTTTTATAAAGTAACACTCCTTTAATGATATGCAAATATTCGGAAGGCTATATCTCAGATAAATAGGACCAGATCGGTGAAGGACCAACTCTCCAGACTGTCG------------------ACTATGAAAATGAGGCCAATTTTTGGCATATTT-----------AATGATGATTTTTTGCGAAAATC-GTGAAAAAATGGATG
dp5 4_group2:471252-471531 - dps_1449 AGCGCATCGGTGACCGCGGGCACGCCAGTGTTACTCCTAGCAACCCGAGGGTGCGACCTGCTAAAAAGAAAGGAAGAGTTTTATAAAGTAACAGTATTTTAATGATATGCAAATATTCGAAAGGCTATATCTCAGATAAATAGGACCAGATCGGTGAAGTACCAACTCTCCAGTCTGTCGAACGGCATCAAAATGTCAACTATGAAAATGAGGCCAATTTTTGGCAAATTTAATGATGTAACCATCATGATTATTTGCGAAAATC-GTGAAAAAATGGATG
droBia1 scf7180000301760:24777-24839 - CCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTTCGCAATTTTTGTGA---GTGCATCATGAATTTTTGCAAAAATG-GTGAAAAATTAAAAA
droTak1 scf7180000414562:99286-99342 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTTAATTATTT-----------GGATCATCATTTTTAGCGAAAAGTGGTCTTATATAAATGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AGCGCATCGGTGACCGCGGGAACGCAAGTGTTACTCCTAGCAACCCGAGGGTGCGACCTGCTAAATAGAAAGGAAGAGTTTTATAAAGTAACACTCCTTTAATGATATGCAAATATTCGGAAGGCTATATCTCAGATAAATAGGACCAGATCGGTGAAGGACCAACTCTCCAGACTGTCG------------------ACTATGAAAATGAGGCCAATTTTTGGCATATTT-----------AATGATGATTTTTTGCGAAAATC-GTGAAAAAATGGATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................TGCGAAAATC-GTGAAAAAATGGATG25200.102000002
...............................................................................................................................................................................................................................................................TGCGAAAATC-GTGAAAAAATGG...22200.051000001
dp5
AGCGCATCGGTGACCGCGGGCACGCCAGTGTTACTCCTAGCAACCCGAGGGTGCGACCTGCTAAAAAGAAAGGAAGAGTTTTATAAAGTAACAGTATTTTAATGATATGCAAATATTCGAAAGGCTATATCTCAGATAAATAGGACCAGATCGGTGAAGTACCAACTCTCCAGTCTGTCGAACGGCATCAAAATGTCAACTATGAAAATGAGGCCAATTTTTGGCAAATTTAATGATGTAACCATCATGATTATTTGCGAAAATC-GTGAAAAAATGGATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................ATTTGCGAAAATC-GTGAAAAAATG....2414.0040000000400
droBia1
CCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTTCGCAATTTTTGTGA---GTGCATCATGAATTTTTGCAAAAATG-GTGAAAAATTAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTTAATTATTT-----------GGATCATCATTTTTAGCGAAAAGTGGTCTTATATAAATGGSizeHit CountTotal NormTotal
No Reads

Generated: 06/08/2015 at 05:11 PM